******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZKSCAN8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:850595-850675 1.0000 80 chr16:66988232-66988312 1.0000 80 chr6:30539976-30540056 1.0000 80 chr1:15365521-15365601 1.0000 80 chr1:26038055-26038135 1.0000 80 chr17:55558354-55558434 1.0000 80 chr19:1849206-1849286 1.0000 80 chr9:138775695-138775775 1.0000 80 chr19:17396723-17396803 1.0000 80 chr11:69527111-69527191 1.0000 80 chr18:43191957-43192037 1.0000 80 chr15:78170685-78170765 1.0000 80 chrX:135282750-135282830 1.0000 80 chr16:70325007-70325087 1.0000 80 chr1:11332768-11332848 1.0000 80 chr4:88033495-88033575 1.0000 80 chr19:17503841-17503921 1.0000 80 chr20:48334286-48334366 1.0000 80 chr19:47530246-47530326 1.0000 80 chr10:73559718-73559798 1.0000 80 chr7:2720633-2720713 1.0000 80 chr19:33932457-33932537 1.0000 80 chr19:850296-850376 1.0000 80 chr18:74535265-74535345 1.0000 80 chr14:91885195-91885275 1.0000 80 chr1:224752942-224753022 1.0000 80 chr20:48912060-48912140 1.0000 80 chr12:123446392-12344647 1.0000 80 chr22:29075301-29075381 1.0000 80 chr21:45245163-45245243 1.0000 80 chr19:4796977-4797057 1.0000 80 chr19:18412321-18412401 1.0000 80 chr7:98923956-98924036 1.0000 80 chr19:954436-954516 1.0000 80 chr19:30363141-30363221 1.0000 80 chr2:120206156-120206236 1.0000 80 chr5:156890889-156890969 1.0000 80 chr12:108625417-10862549 1.0000 80 chr16:2076590-2076670 1.0000 80 chr2:32514363-32514443 1.0000 80 chr19:752957-753037 1.0000 80 chr7:101387203-101387283 1.0000 80 chr16:66639522-66639602 1.0000 80 chr5:10295378-10295458 1.0000 80 chr19:1292356-1292436 1.0000 80 chr16:89641699-89641779 1.0000 80 chr19:7679904-7679984 1.0000 80 chr19:18243602-18243682 1.0000 80 chr19:18243391-18243471 1.0000 80 chr8:145607600-145607680 1.0000 80 chr16:24864476-24864556 1.0000 80 chr20:50202553-50202633 1.0000 80 chr19:3455566-3455646 1.0000 80 chr1:41958891-41958971 1.0000 80 chr11:78074412-78074492 1.0000 80 chr16:22286431-22286511 1.0000 80 chr19:10198133-10198213 1.0000 80 chr19:1808500-1808580 1.0000 80 chr19:17357677-17357757 1.0000 80 chr3:46890133-46890213 1.0000 80 chr6:13396380-13396460 1.0000 80 chr5:173109485-173109565 1.0000 80 chr4:103605896-103605976 1.0000 80 chr20:31351835-31351915 1.0000 80 chr19:47815823-47815903 1.0000 80 chr8:142071478-142071558 1.0000 80 chr19:1515112-1515192 1.0000 80 chr1:3508030-3508110 1.0000 80 chr20:35035754-35035834 1.0000 80 chr7:116499608-116499688 1.0000 80 chr21:45245383-45245463 1.0000 80 chr17:27088339-27088419 1.0000 80 chr19:2739700-2739780 1.0000 80 chr1:25282392-25282472 1.0000 80 chr16:1142837-1142917 1.0000 80 chr17:38747126-38747206 1.0000 80 chr12:111851506-11185158 1.0000 80 chr7:47419844-47419924 1.0000 80 chr10:112619672-11261975 1.0000 80 chr19:18209531-18209611 1.0000 80 chr19:11313707-11313787 1.0000 80 chr10:6623890-6623970 1.0000 80 chr19:3229106-3229186 1.0000 80 chrX:223762-223842 1.0000 80 chr6:160940359-160940439 1.0000 80 chr15:52432225-52432305 1.0000 80 chr10:76998247-76998327 1.0000 80 chr6:157097874-157097954 1.0000 80 chr19:615636-615716 1.0000 80 chr12:124965088-12496516 1.0000 80 chr1:113086707-113086787 1.0000 80 chr19:3371581-3371661 1.0000 80 chr8:91226967-91227047 1.0000 80 chrX:47441150-47441230 1.0000 80 chr1:21571806-21571886 1.0000 80 chr19:593186-593266 1.0000 80 chr19:50999813-50999893 1.0000 80 chr3:14380533-14380613 1.0000 80 chr2:131136366-131136446 1.0000 80 chr19:5189019-5189099 1.0000 80 chr2:101223508-101223588 1.0000 80 chr19:3402993-3403073 1.0000 80 chr10:72983213-72983293 1.0000 80 chr16:24864677-24864757 1.0000 80 chrX:74375469-74375549 1.0000 80 chr19:3398265-3398345 1.0000 80 chr6:35887824-35887904 1.0000 80 chr22:20244552-20244632 1.0000 80 chr9:139623293-139623373 1.0000 80 chr11:112147917-11214799 1.0000 80 chr9:35489462-35489542 1.0000 80 chr12:124483613-12448369 1.0000 80 chr19:844059-844139 1.0000 80 chr18:74535528-74535608 1.0000 80 chr3:14847841-14847921 1.0000 80 chr1:40916329-40916409 1.0000 80 chr13:114448618-11444869 1.0000 80 chr19:50359712-50359792 1.0000 80 chr19:3775468-3775548 1.0000 80 chr20:39969077-39969157 1.0000 80 chr9:117424453-117424533 1.0000 80 chr9:124598312-124598392 1.0000 80 chr19:17355515-17355595 1.0000 80 chr7:98924156-98924236 1.0000 80 chr16:58011573-58011653 1.0000 80 chr16:88536360-88536440 1.0000 80 chr15:63221301-63221381 1.0000 80 chr12:124978897-12497897 1.0000 80 chrX:47438998-47439078 1.0000 80 chr19:8677069-8677149 1.0000 80 chr8:128980129-128980209 1.0000 80 chr6:35887623-35887703 1.0000 80 chr19:10631527-10631607 1.0000 80 chr8:28243892-28243972 1.0000 80 chr19:3455767-3455847 1.0000 80 chr1:15365108-15365188 1.0000 80 chr1:15365316-15365396 1.0000 80 chr19:54868249-54868329 1.0000 80 chr9:139623072-139623152 1.0000 80 chr11:68610347-68610427 1.0000 80 chr8:62504257-62504337 1.0000 80 chr20:48531374-48531454 1.0000 80 chr1:145738770-145738850 1.0000 80 chr1:193073417-193073497 1.0000 80 chr12:111706916-11170699 1.0000 80 chr19:3719256-3719336 1.0000 80 chr2:130939494-130939574 1.0000 80 chr17:55332667-55332747 1.0000 80 chr19:3710645-3710725 1.0000 80 chr19:17795209-17795289 1.0000 80 chr16:4936342-4936422 1.0000 80 chr19:39174767-39174847 1.0000 80 chr7:99718486-99718566 1.0000 80 chr11:72393473-72393553 1.0000 80 chr12:123436906-12343698 1.0000 80 chr10:73407831-73407911 1.0000 80 chr19:4181846-4181926 1.0000 80 chrX:223534-223614 1.0000 80 chr20:48926059-48926139 1.0000 80 chr4:77869118-77869198 1.0000 80 chr3:8819361-8819441 1.0000 80 chr16:85353453-85353533 1.0000 80 chr11:63868413-63868493 1.0000 80 chr19:18285005-18285085 1.0000 80 chr19:1858519-1858599 1.0000 80 chr9:140063128-140063208 1.0000 80 chr15:34330476-34330556 1.0000 80 chr20:34687189-34687269 1.0000 80 chr9:127019801-127019881 1.0000 80 chr7:24768198-24768278 1.0000 80 chr19:18362687-18362767 1.0000 80 chr5:1333512-1333592 1.0000 80 chr17:623930-624010 1.0000 80 chr19:12869208-12869288 1.0000 80 chr17:624148-624228 1.0000 80 chr12:113772465-11377254 1.0000 80 chr22:37640564-37640644 1.0000 80 chr8:28244091-28244171 1.0000 80 chrX:47441350-47441430 1.0000 80 chrX:154843730-154843810 1.0000 80 chrX:223308-223388 1.0000 80 chr9:111518378-111518458 1.0000 80 chr2:131136594-131136674 1.0000 80 chr12:54610663-54610743 1.0000 80 chr11:1594772-1594852 1.0000 80 chr19:3336502-3336582 1.0000 80 chr19:482548-482628 1.0000 80 chr19:18241818-18241898 1.0000 80 chr1:87258160-87258240 1.0000 80 chr11:75063665-75063745 1.0000 80 chr1:12636627-12636707 1.0000 80 chr19:764500-764580 1.0000 80 chr19:7989339-7989419 1.0000 80 chr19:4570626-4570706 1.0000 80 chr6:15043274-15043354 1.0000 80 chr19:1848982-1849062 1.0000 80 chr19:18809315-18809395 1.0000 80 chr19:45206195-45206275 1.0000 80 chr12:109358721-10935880 1.0000 80 chr10:6506988-6507068 1.0000 80 chr19:514022-514102 1.0000 80 chr19:11362464-11362544 1.0000 80 chr17:74098797-74098877 1.0000 80 chr19:11337448-11337528 1.0000 80 chr9:127075096-127075176 1.0000 80 chr16:2021624-2021704 1.0000 80 chr16:81667753-81667833 1.0000 80 chr6:152561713-152561793 1.0000 80 chr19:36248059-36248139 1.0000 80 chr19:513819-513899 1.0000 80 chr15:68175381-68175461 1.0000 80 chr10:70824671-70824751 1.0000 80 chr15:63495780-63495860 1.0000 80 chr19:3710845-3710925 1.0000 80 chr19:702585-702665 1.0000 80 chr4:130019808-130019888 1.0000 80 chr5:176131495-176131575 1.0000 80 chr19:35805164-35805244 1.0000 80 chr8:62674101-62674181 1.0000 80 chr19:50042596-50042676 1.0000 80 chr10:112247704-11224778 1.0000 80 chr19:47103684-47103764 1.0000 80 chr19:3470258-3470338 1.0000 80 chr9:33620120-33620200 1.0000 80 chr16:58426979-58427059 1.0000 80 chr16:28081755-28081835 1.0000 80 chr1:160492797-160492877 1.0000 80 chr9:127321279-127321359 1.0000 80 chr20:37519339-37519419 1.0000 80 chr10:70884807-70884887 1.0000 80 chr11:77789867-77789947 1.0000 80 chr1:31331925-31332005 1.0000 80 chr7:5595632-5595712 1.0000 80 chr19:10490849-10490929 1.0000 80 chr12:94561042-94561122 1.0000 80 chr20:39968873-39968953 1.0000 80 chr19:18140774-18140854 1.0000 80 chr7:4968291-4968371 1.0000 80 chr10:6624108-6624188 1.0000 80 chr6:42688753-42688833 1.0000 80 chr12:125170956-12517103 1.0000 80 chr15:78026235-78026315 1.0000 80 chr1:2475970-2476050 1.0000 80 chr1:48492824-48492904 1.0000 80 chr20:33291254-33291334 1.0000 80 chr7:5595848-5595928 1.0000 80 chr19:17403771-17403851 1.0000 80 chr20:32320324-32320404 1.0000 80 chr8:62504456-62504536 1.0000 80 chr14:91885401-91885481 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZKSCAN8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZKSCAN8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.262 C 0.244 G 0.241 T 0.253 Background letter frequencies (from file dataset with add-one prior applied): A 0.262 C 0.244 G 0.241 T 0.253 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTATACA MEME-1 width = 8 sites = 196 llr = 1297 E-value = 2.1e-117 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTATACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:1817:7 pos.-specific C ::3:1:a2 probability G 2a:2:2:: matrix T 7:7:81:1 bits 2.1 * 1.8 * * 1.6 * * 1.4 * * Relative 1.2 * * * Entropy 1.0 * ** * (9.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTATACA consensus G C G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTATACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:160492797-160492877 54 1.71e-05 GCCAGACAAC TGTATACA GACGATTTAG chr4:130019808-130019888 63 1.71e-05 gttggccagc tgtataca tacaattccc chr6:15043274-15043354 63 1.71e-05 cagggacatc tgTATACA CGAGCATAAT chr1:87258160-87258240 36 1.71e-05 tttttacaag tgtataca tatgtcaaag chr19:18241818-18241898 73 1.71e-05 AGACACCAGC TGTATACA chr5:1333512-1333592 46 1.71e-05 GGGGGACTAC TGTATACA CATTGGATGA chr3:8819361-8819441 14 1.71e-05 caaagaggta tgtataca gatgGCTGTT chr1:15365316-15365396 57 1.71e-05 GTGCACCTAC TGTATACA GACATGAATG chr6:35887623-35887703 44 1.71e-05 AGACACCGAC TGTATACA CAGCGGTCTG chr19:17355515-17355595 62 1.71e-05 TAGCGCCGAC TGTATACA CAATCCCAGC chr9:124598312-124598392 3 1.71e-05 TC TGTATACA ACACgtgctt chr2:131136366-131136446 44 1.71e-05 ATGTGCCTAC TGTATACA CACCATCCCC chr19:615636-615716 19 1.71e-05 ATGTGCTTAT TGTATACA GTAGGTGGTA chr7:116499608-116499688 51 1.71e-05 GAGTATCCAC TGTATACA AAATACTAAT chr1:3508030-3508110 33 1.71e-05 gagctcttac tgtataca ggcaccaagc chr4:103605896-103605976 37 1.71e-05 aggtggataa tgtataca gcaaggatat chr5:173109485-173109565 24 1.71e-05 catcactgcc tgtataca gtaggtgctc chr10:73559718-73559798 48 1.71e-05 gagcacctac tgtataca tggccctata chrX:135282750-135282830 36 1.71e-05 gagtgattcc tgtataca aagccctgga chr1:15365521-15365601 72 1.71e-05 GTGCACCTAC TGTATACA G chr12:94561042-94561122 8 4.96e-05 cacctac tgtatacc agacctggct chr16:28081755-28081835 39 4.96e-05 TGGCACCGAC TGTATACC ATGCGCTTTA chr15:63495780-63495860 54 4.96e-05 gagtgcttac tgtatacc aaattctagg chr17:74098797-74098877 44 4.96e-05 gagcacctat tgtatacc aggcactgtg chr19:1848982-1849062 70 4.96e-05 gagcgcctac tgtatacc agc chr19:4570626-4570706 41 4.96e-05 tggcaccagc tgtatacc agacacatgt chr19:482548-482628 33 4.96e-05 AATCGCCTAC TGCATACA GGGTGAGATC chr7:24768198-24768278 3 4.96e-05 CC TGCATACA GAAGGCGCTT chr11:68610347-68610427 40 4.96e-05 CTGGCGGCTC TGCATACA GCAGGTGCTC chr19:54868249-54868329 32 4.96e-05 gagcacctac tgtatacc acacacacgt chr19:844059-844139 67 4.96e-05 gagcacccac tgtatacc gggcca chr19:3402993-3403073 31 4.96e-05 ttgcacctgc tgtatacc agatcctatC chr19:50999813-50999893 41 4.96e-05 GCATTTTGGG TGCATACA GCAGGTACTC chr1:21571806-21571886 23 4.96e-05 tgcagtcact tgtatacc acaggtgctc chr17:38747126-38747206 29 4.96e-05 cagcacctac tgtatacc agaccctgaa chr20:35035754-35035834 73 4.96e-05 tagcacctgc tgtatacc chr19:7679904-7679984 16 4.96e-05 tgtggggctg tgcataca gtaggcacca chr19:752957-753037 36 4.96e-05 aggcgcctgc tgtatacc agactctggg chr12:108625417-10862549 73 4.96e-05 aagtacctgc tgtatacc chr19:30363141-30363221 49 4.96e-05 AACTGCAATG TGCATACA GTAGGCGCCC chr7:98923956-98924036 56 4.96e-05 AGTCGATCCC TGCATACA GTAGGCGCCC chr19:18412321-18412401 45 4.96e-05 gagcacttgc tgtatacc aggccagtcc chr22:29075301-29075381 36 4.96e-05 AGGCGCTGAC TGTATACC GACACCCCCC chr18:74535265-74535345 49 4.96e-05 CTGTGGGTAG TGCATACA GTAGGCGCCA chr1:48492824-48492904 34 8.17e-05 cccggagtga ggtataca gtaggggctc chr1:2475970-2476050 45 8.17e-05 CTGCCTGGCC TGTATGCA GTAGGTGCTG chrX:223308-223388 70 8.17e-05 AGGCACCTGT TGTATGCA CAG chr12:113772465-11377254 1 8.17e-05 . GGTATACA ATAAGAGCTC chr19:12869208-12869288 19 8.17e-05 taaagcattt ggtataca gtaggtgctc chr9:140063128-140063208 45 8.17e-05 CACCTCCCGG TGTATGCA GTGGTGATGC chr19:1858519-1858599 22 8.17e-05 gcacaggcct ggtataca gcaggtgctt chrX:223534-223614 54 8.17e-05 AGGCACCTGT TGTATGCA GTCAGAAATG chr19:17795209-17795289 38 8.17e-05 aacagtgcct ggtataca gtaggtgctc chr19:3719256-3719336 26 8.17e-05 GTTGCCTGTA GGTATACA GTAGGTGTTC chr19:10631527-10631607 20 8.17e-05 acagagccaa ggtataca atgagagctc chr12:124978897-12497897 31 8.17e-05 CCAGAGACAT GGTATACA GCAAGCACCC chr19:5189019-5189099 28 8.17e-05 cctggagcct ggtataca gtaggtgctc chr19:3371581-3371661 54 8.17e-05 tccgacacct ggtataca gtaggtgcca chrX:223762-223842 38 8.17e-05 AGGCACCTGT TGTATGCA CAGTCACAAA chr19:11313707-11313787 38 8.17e-05 cacaagaatg ggtataca gtaggtaccc chr19:1515112-1515192 70 8.17e-05 CTGCAAGGAA GGTATACA TAA chr20:31351835-31351915 28 8.17e-05 TTATAGGGTt ggtataca gtaagcactc chr19:47530246-47530326 23 8.17e-05 AGGCACCTAC TGTATGCA CTAGCCCATT chr19:17503841-17503921 31 8.17e-05 TGTGCACAGA GGTATACA GTAGTCACTC chr17:55558354-55558434 41 8.17e-05 AGTACAGGAT GGTATACA CAAGGCACTG chr19:702585-702665 54 9.74e-05 gagcacctac tgtgtaca gacagtgttg chr18:43191957-43192037 19 9.74e-05 gagcacctat tgtgtaca agatgctata chr19:3398265-3398345 69 1.13e-04 gagcgccagc tgcatacc aggc chr19:47815823-47815903 71 1.13e-04 gagtgcttac tgcatacc ag chr12:125170956-12517103 18 2.08e-04 TGAAAACcca ggcataca gtcagtgctc chr20:37519339-37519419 7 2.08e-04 catgct ggcataca gtaggtgctc chr19:514022-514102 3 2.08e-04 AC TGTACACA GACCCAGCAT chr17:624148-624228 60 2.08e-04 ATTGGAAGGG AGTATACA GTAGGCTGTG chr17:623930-624010 43 2.08e-04 ATGGATTGGG AGTATACA GTCGGCTGTG chr11:63868413-63868493 57 2.08e-04 aagcaccaac tgcatgca aggcactgag chr12:123436906-12343698 17 2.08e-04 tttggggctg ggcataca gtaggtgctc chr17:55332667-55332747 63 2.08e-04 aagcacctac tgtatgcc agaacccgtg chr2:130939494-130939574 39 2.08e-04 gagcgcccaa tgtatgcc tggcactggg chr12:111706916-11170699 23 2.08e-04 caaGGTTCAC AGTATACA GCAGGTGCTT chr1:145738770-145738850 28 2.08e-04 GTTCAGGGAA AGTATACA GCTGGCCCTT chr20:48531374-48531454 60 2.08e-04 ggacgcctgc tgtatgcc agaggccctg chr19:3455767-3455847 35 2.08e-04 cccagtgcct ggcataca gtacacactt chr16:88536360-88536440 43 2.08e-04 gacagcttgg ggcataca gtaggtgctc chr19:3775468-3775548 39 2.08e-04 gagcaccagc tgtatgcc tgccttctag chr13:114448618-11444869 57 2.08e-04 CATAGGGTGA GGCATACA GTAGGCGCTC chr2:101223508-101223588 52 2.08e-04 TTCATCTTCG TGCATGCA CACATGCAAT chr19:593186-593266 23 2.08e-04 TCCCAGTCCC AGTATACA GCAGGTGCCA chr10:6623890-6623970 23 2.08e-04 atcagaacct ggcataca gtaggcgctc chr17:27088339-27088419 1 2.08e-04 . AGTATaca caaaaggtgc chr20:50202553-50202633 40 2.08e-04 tcaataaata tGCATGCA ATGGCTGTCT chr5:156890889-156890969 41 2.08e-04 acatgcctgc tgtatgcc agggacaatg chr19:4796977-4797057 49 2.08e-04 gagcacctac tgtatgcc aggcaccatt chr20:48912060-48912140 66 2.08e-04 gcaacaagta ggcataca gtaggtg chr14:91885195-91885275 43 2.08e-04 GCGCTTGGCA AGTATACA GCAGGCACTA chr19:33932457-33932537 72 2.08e-04 gagcgcctgc tgtatgcc t chr4:88033495-88033575 20 2.08e-04 TGACAGCATG AGTATACA GTTGACATAA chr16:70325007-70325087 41 2.08e-04 ttgagcactt agtataca gcaggcacca chr10:6506988-6507068 32 2.39e-04 ATGTGCCGAT TGTATACT TATTGAAAGT chr1:12636627-12636707 38 2.39e-04 GAGCACCTTC TGTATACT CAGATGAAAA chr19:3336502-3336582 35 2.39e-04 AGTTATTGGA GGTATGCA ATTATTTAGC chr1:224752942-224753022 24 2.39e-04 ATTGCCCAAC TGTATACT CTGAGTCACT chr9:138775695-138775775 32 2.39e-04 gagagcctac tgtatact tccggctgca chr6:160940359-160940439 51 2.56e-04 GAGCACCTAC TGTATTCA CAGAACTCTA chr19:10198133-10198213 56 2.56e-04 ATGTGCTGAT TGTATTCA ATGGGGGAGA chr8:145607600-145607680 57 2.56e-04 GGACTCCTGC TGTATTCA GCGAGTATTA chr8:62504257-62504337 33 3.21e-04 ctgcacaaac tgtaaaca gtaggcaccg chrX:47438998-47439078 32 3.21e-04 CGACTCCTCA TGTAAACA GTCGGCAACA chr3:14847841-14847921 26 3.21e-04 gagcaccaac tgtgtacc agacatcatt chr9:35489462-35489542 1 3.21e-04 . TGTAAACA GCAGGAGTCA chr10:72983213-72983293 21 3.21e-04 GAGCACTTAC TGTGTACC CAACATGGTG chr3:14380533-14380613 60 3.21e-04 gagcacctac tgtgtacc aggctctgtg chr15:52432225-52432305 44 3.21e-04 AAATAATAGG TGTAAACA ACAGGGGCAC chr2:32514363-32514443 8 3.21e-04 TTCAGAA TGTAAACA TTTGTCAAAC chr20:32320324-32320404 41 3.51e-04 AGGCGCCACC TGTGTGCA CAGCCTGGAC chr21:45245163-45245243 61 3.51e-04 AGGCACTCCA TGTGTGCA GGTCCCTCCT chr6:42688753-42688833 48 4.45e-04 gagtacctgc tgcatgcc agctaccagg chr1:31331925-31332005 62 4.45e-04 gagcaccagc tgcatgcc ccacccctgc chr15:68175381-68175461 62 4.45e-04 CGGCACCTAC TGCATGCC CACATGACAG chr19:513819-513899 66 4.45e-04 GAGCACCCAC TGCACACA ACCCCAG chr16:2021624-2021704 3 4.45e-04 tt tgcacaca gaaggtgctc chr11:112147917-11214799 16 4.45e-04 GGTATCTTGG AGCATACA GCAGGTGCTC chr10:76998247-76998327 37 4.45e-04 cccaggcctg agcataca gcaggcgcta chr16:1142837-1142917 57 4.45e-04 AACCAATCCC TGCACACA GTCGGCGCTC chr19:18243391-18243471 24 4.45e-04 aagcacctac tgcatgcc agaccctctg chr16:89641699-89641779 28 4.45e-04 gcgcggcgcc tgcacaca acaggcgccc chr16:66988232-66988312 66 4.45e-04 GAACACCGGC TGCATGCC TGTCTCT chr10:112247704-11224778 35 5.36e-04 cttagccaga agtatgca gcaggtgctc chr19:7989339-7989419 33 5.36e-04 cacgctactt ggcatgca gtaagcgctc chr7:99718486-99718566 72 5.36e-04 ctatattgtt agtatgca t chr19:39174767-39174847 48 5.36e-04 aacaaaccct ggtacaca ctaagtgctc chr9:139623072-139623152 42 5.36e-04 CATGGGCGCG GGTACACA CCAGGCGCCT chr9:117424453-117424533 24 5.36e-04 cagggtatgc ggtacaca gtaggcgttt chr6:30539976-30540056 34 5.36e-04 AACCCCAGTA GGTACACA GTAACTAATt chr9:33620120-33620200 41 5.98e-04 aaagACCACT Tgtatgct gcagcctacc chr9:127019801-127019881 14 5.98e-04 cttcagtgcc tgcattca gctggtgcac chr12:111851506-11185158 10 5.98e-04 CTGATCTCT TGCATTCA TATGttcatt chr7:101387203-101387283 66 5.98e-04 agacacctac tgtattcc caggccc chrX:154843730-154843810 43 6.14e-04 TAGTCTGGCT GGTattca ttcatgcaat chr19:47103684-47103764 46 6.31e-04 aatgaCTGAA TGAATACC CCGTTCCCAC chr20:33291254-33291334 46 7.12e-04 TAATAAATGT TGAATGCA TTGTTGAACA chr22:20244552-20244632 44 7.12e-04 gttagtcatg tgaatgCA CTAAATGCTC chr19:1808500-1808580 43 7.12e-04 gagcacctgc tgaatgca aggccTCAGG chr15:78170685-78170765 9 7.12e-04 AAGCTATA TGTAAACC ATGAATCACA chr15:78026235-78026315 54 8.32e-04 gagcaccaac tgtgtgcc aggctcttcg chr22:37640564-37640644 38 8.32e-04 gagtgcctgc tgtgtgcc aggcacagta chr12:124965088-12496516 23 8.32e-04 GTGCTTAATC TGTGCACA TCCTCACCAC chr19:18209531-18209611 60 8.32e-04 gagcgcctgc tgtgtgcc tggctctgga chr10:112619672-11261975 66 8.32e-04 CATACATTTT TGTAAGCA TTCCTTC chr19:954436-954516 59 8.32e-04 aggcaactgc tgtgtgcc cgattttgga chr1:26038055-26038135 54 8.32e-04 tgagcaccac tgtgtgcc aggccctgCT chr9:127075096-127075176 51 8.92e-04 gagcgcctgc tgtgtact gggtcatgca chr19:18809315-18809395 26 8.92e-04 gcaggcacag tgtgtact cagcaggcac chr15:34330476-34330556 24 8.92e-04 atgcgcctac tgtgtact aggcattgca chr19:18285005-18285085 43 8.92e-04 GAGCGCCTAC TGTGTACT TTTGGGGCAG chr8:91226967-91227047 43 8.92e-04 gagcgtccac tgtgtact ctggggagct chr19:3470258-3470338 36 1.03e-03 ATCCAAgcct ggcacaca gtcggtgctc chr9:111518378-111518458 5 1.03e-03 atct ggcacaca gcaggagctc chr20:34687189-34687269 10 1.03e-03 TAATGAGGT AGTACACA GTAGGCACTC chr16:58011573-58011653 15 1.03e-03 aaaatggcct ggcacaca gtaggtgcta chr3:46890133-46890213 39 1.03e-03 gcatggagaa ggcatgcc atcggtgttc chr1:41958891-41958971 19 1.03e-03 GAGCGGGGAA GGCACACA GTGGAGACAG chr19:17403771-17403851 59 1.20e-03 GAACCCAACT AGTattca ggcatccagc chr16:4936342-4936422 62 1.20e-03 CTGCACAAAT GGTATTCC TGCTGCTCAC chr11:1594772-1594852 32 1.23e-03 GCCTCAGAGC TGAGTACA CCGTTGGCGA chrX:47441150-47441230 14 1.26e-03 cagtaggtgc tgtataaa tgccggctat chr19:3229106-3229186 65 1.26e-03 gggcatttgg tgtgaaca gaaTTCCT chr10:70824671-70824751 42 1.35e-03 TTGTTGAACA AGAATaca tgcatttatt chr12:109358721-10935880 53 1.35e-03 aaacacatgt tgaacaca tgctgtgtag chr16:58426979-58427059 49 1.55e-03 TGGCTCCAGC TGAATACT TAAGAATTAG chr16:85353453-85353533 39 1.55e-03 catggtgcct ggcaaaca taaggtgctc chr2:120206156-120206236 42 1.55e-03 gcaccagtta agtaaaca gtaggtgctc chr11:77789867-77789947 46 1.70e-03 tgggaccaca ggcgtgca ccaccacgcc chr8:62674101-62674181 16 1.70e-03 cagaggttgc tttataca gcaggcactc chr19:35805164-35805244 46 1.70e-03 AGCGTCAGCC TTTATACA TCACTAcatt chr7:4968291-4968371 13 1.85e-03 AAGCACCTTC TGTGTGCT GGCTCCATGA chr7:5595632-5595712 37 1.85e-03 TTAGACATAA GGCACACC ATCAAGCAAA chrX:47441350-47441430 70 1.85e-03 aagggatttt tgtgtgct tgg chr20:48926059-48926139 52 1.85e-03 tgagcaccac tgtgttcc gtgcctgcta chr1:193073417-193073497 64 1.85e-03 gagcgcctac tgtgtgct aagtaggca chr16:24864677-24864757 43 1.85e-03 cacagagctt ggcacacc gctggtgact chr12:123446392-12344647 31 1.85e-03 TGCTGCTGAT TGTAATCA ACCATATACA chr11:72393473-72393553 8 1.95e-03 tacagtt ggtgttca ataagtgctt chr7:47419844-47419924 16 2.09e-03 GTGCAGGCTC AGCATTCA GCAGGCGCCT chr16:24864476-24864556 21 2.09e-03 taatgtttgt tgCACTCA gtccccaggg chr19:18140774-18140854 68 2.19e-03 GGAGACTGGC TGTTTACA GGGGA chr6:157097874-157097954 44 2.19e-03 aagcatttat tgagtacc tactgggtac chr19:850296-850376 53 2.19e-03 AACAGGGCTG TGTAGACA GTAGGCGCTT chr19:8677069-8677149 55 2.30e-03 CAGCAGGTGC TGCATAAA TACCAGACTC chr16:22286431-22286511 10 2.30e-03 GGTGCCCAT TGAGTGCA CTGGGGAAGC chr19:4181846-4181926 42 2.55e-03 tgcatgagtc agaatgca tgggccagcc chr19:3710645-3710725 61 3.02e-03 gggcatttat tgtgcact tactgtatgc chr19:18243602-18243682 52 3.02e-03 ggctcacacc tgtaatcc cagcactttg chr2:131136594-131136674 68 3.30e-03 TGACCCCATA GGCACACT CAATT chr19:2739700-2739780 29 3.30e-03 GAGGGTGGCC TGCACGCT CTCAAACCGG chr16:2076590-2076670 26 3.30e-03 gcatacagta ggtatcca ataaatgttc chr8:62504456-62504536 13 3.46e-03 AAGTATTATT TGTGTAAA GGAAGTAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTATACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:160492797-160492877 1.7e-05 53_[+1]_19 chr4:130019808-130019888 1.7e-05 62_[+1]_10 chr6:15043274-15043354 1.7e-05 62_[+1]_10 chr1:87258160-87258240 1.7e-05 35_[+1]_37 chr19:18241818-18241898 1.7e-05 72_[+1] chr5:1333512-1333592 1.7e-05 45_[+1]_27 chr3:8819361-8819441 1.7e-05 13_[+1]_59 chr1:15365316-15365396 1.7e-05 56_[+1]_16 chr6:35887623-35887703 1.7e-05 43_[+1]_29 chr19:17355515-17355595 1.7e-05 61_[+1]_11 chr9:124598312-124598392 1.7e-05 2_[+1]_70 chr2:131136366-131136446 1.7e-05 43_[+1]_29 chr19:615636-615716 1.7e-05 18_[+1]_54 chr7:116499608-116499688 1.7e-05 50_[+1]_22 chr1:3508030-3508110 1.7e-05 32_[+1]_40 chr4:103605896-103605976 1.7e-05 36_[+1]_36 chr5:173109485-173109565 1.7e-05 23_[+1]_49 chr10:73559718-73559798 1.7e-05 47_[+1]_25 chrX:135282750-135282830 1.7e-05 35_[+1]_37 chr1:15365521-15365601 1.7e-05 71_[+1]_1 chr12:94561042-94561122 5e-05 7_[+1]_65 chr16:28081755-28081835 5e-05 38_[+1]_34 chr15:63495780-63495860 5e-05 53_[+1]_19 chr17:74098797-74098877 5e-05 43_[+1]_29 chr19:1848982-1849062 5e-05 69_[+1]_3 chr19:4570626-4570706 5e-05 40_[+1]_32 chr19:482548-482628 5e-05 32_[+1]_40 chr7:24768198-24768278 5e-05 2_[+1]_70 chr11:68610347-68610427 5e-05 39_[+1]_33 chr19:54868249-54868329 5e-05 31_[+1]_41 chr19:844059-844139 5e-05 66_[+1]_6 chr19:3402993-3403073 5e-05 30_[+1]_42 chr19:50999813-50999893 5e-05 40_[+1]_32 chr1:21571806-21571886 5e-05 22_[+1]_50 chr17:38747126-38747206 5e-05 28_[+1]_44 chr20:35035754-35035834 5e-05 72_[+1] chr19:7679904-7679984 5e-05 15_[+1]_57 chr19:752957-753037 5e-05 35_[+1]_37 chr12:108625417-10862549 5e-05 72_[+1] chr19:30363141-30363221 5e-05 48_[+1]_24 chr7:98923956-98924036 5e-05 55_[+1]_17 chr19:18412321-18412401 5e-05 44_[+1]_28 chr22:29075301-29075381 5e-05 35_[+1]_37 chr18:74535265-74535345 5e-05 48_[+1]_24 chr1:48492824-48492904 8.2e-05 33_[+1]_39 chr1:2475970-2476050 8.2e-05 44_[+1]_28 chrX:223308-223388 8.2e-05 69_[+1]_3 chr12:113772465-11377254 8.2e-05 [+1]_72 chr19:12869208-12869288 8.2e-05 18_[+1]_54 chr9:140063128-140063208 8.2e-05 44_[+1]_28 chr19:1858519-1858599 8.2e-05 21_[+1]_51 chrX:223534-223614 8.2e-05 53_[+1]_19 chr19:17795209-17795289 8.2e-05 37_[+1]_35 chr19:3719256-3719336 8.2e-05 25_[+1]_47 chr19:10631527-10631607 8.2e-05 19_[+1]_53 chr12:124978897-12497897 8.2e-05 30_[+1]_42 chr19:5189019-5189099 8.2e-05 27_[+1]_45 chr19:3371581-3371661 8.2e-05 53_[+1]_19 chrX:223762-223842 8.2e-05 37_[+1]_35 chr19:11313707-11313787 8.2e-05 37_[+1]_35 chr19:1515112-1515192 8.2e-05 69_[+1]_3 chr20:31351835-31351915 8.2e-05 27_[+1]_45 chr19:47530246-47530326 8.2e-05 22_[+1]_50 chr19:17503841-17503921 8.2e-05 30_[+1]_42 chr17:55558354-55558434 8.2e-05 40_[+1]_32 chr19:702585-702665 9.7e-05 53_[+1]_19 chr18:43191957-43192037 9.7e-05 18_[+1]_54 chr19:3398265-3398345 0.00011 68_[+1]_4 chr19:47815823-47815903 0.00011 70_[+1]_2 chr12:125170956-12517103 0.00021 17_[+1]_55 chr20:37519339-37519419 0.00021 6_[+1]_66 chr19:514022-514102 0.00021 2_[+1]_70 chr17:624148-624228 0.00021 59_[+1]_13 chr17:623930-624010 0.00021 42_[+1]_30 chr11:63868413-63868493 0.00021 56_[+1]_16 chr12:123436906-12343698 0.00021 16_[+1]_56 chr17:55332667-55332747 0.00021 62_[+1]_10 chr2:130939494-130939574 0.00021 38_[+1]_34 chr12:111706916-11170699 0.00021 22_[+1]_50 chr1:145738770-145738850 0.00021 27_[+1]_45 chr20:48531374-48531454 0.00021 59_[+1]_13 chr19:3455767-3455847 0.00021 34_[+1]_38 chr16:88536360-88536440 0.00021 42_[+1]_30 chr19:3775468-3775548 0.00021 38_[+1]_34 chr13:114448618-11444869 0.00021 56_[+1]_16 chr2:101223508-101223588 0.00021 51_[+1]_21 chr19:593186-593266 0.00021 22_[+1]_50 chr10:6623890-6623970 0.00021 22_[+1]_50 chr17:27088339-27088419 0.00021 [+1]_72 chr20:50202553-50202633 0.00021 39_[+1]_33 chr5:156890889-156890969 0.00021 40_[+1]_32 chr19:4796977-4797057 0.00021 48_[+1]_24 chr20:48912060-48912140 0.00021 65_[+1]_7 chr14:91885195-91885275 0.00021 42_[+1]_30 chr19:33932457-33932537 0.00021 71_[+1]_1 chr4:88033495-88033575 0.00021 19_[+1]_53 chr16:70325007-70325087 0.00021 40_[+1]_32 chr10:6506988-6507068 0.00024 31_[+1]_41 chr1:12636627-12636707 0.00024 37_[+1]_35 chr19:3336502-3336582 0.00024 34_[+1]_38 chr1:224752942-224753022 0.00024 23_[+1]_49 chr9:138775695-138775775 0.00024 31_[+1]_41 chr6:160940359-160940439 0.00026 50_[+1]_22 chr19:10198133-10198213 0.00026 55_[+1]_17 chr8:145607600-145607680 0.00026 56_[+1]_16 chr8:62504257-62504337 0.00032 32_[+1]_40 chrX:47438998-47439078 0.00032 31_[+1]_41 chr3:14847841-14847921 0.00032 25_[+1]_47 chr9:35489462-35489542 0.00032 [+1]_72 chr10:72983213-72983293 0.00032 20_[+1]_52 chr3:14380533-14380613 0.00032 59_[+1]_13 chr15:52432225-52432305 0.00032 43_[+1]_29 chr2:32514363-32514443 0.00032 7_[+1]_65 chr20:32320324-32320404 0.00035 40_[+1]_32 chr21:45245163-45245243 0.00035 60_[+1]_12 chr6:42688753-42688833 0.00044 47_[+1]_25 chr1:31331925-31332005 0.00044 61_[+1]_11 chr15:68175381-68175461 0.00044 61_[+1]_11 chr19:513819-513899 0.00044 65_[+1]_7 chr16:2021624-2021704 0.00044 2_[+1]_70 chr11:112147917-11214799 0.00044 15_[+1]_57 chr10:76998247-76998327 0.00044 36_[+1]_36 chr16:1142837-1142917 0.00044 56_[+1]_16 chr19:18243391-18243471 0.00044 23_[+1]_49 chr16:89641699-89641779 0.00044 27_[+1]_45 chr16:66988232-66988312 0.00044 65_[+1]_7 chr10:112247704-11224778 0.00054 34_[+1]_38 chr19:7989339-7989419 0.00054 32_[+1]_40 chr7:99718486-99718566 0.00054 71_[+1]_1 chr19:39174767-39174847 0.00054 47_[+1]_25 chr9:139623072-139623152 0.00054 41_[+1]_31 chr9:117424453-117424533 0.00054 23_[+1]_49 chr6:30539976-30540056 0.00054 33_[+1]_39 chr9:33620120-33620200 0.0006 40_[+1]_32 chr9:127019801-127019881 0.0006 13_[+1]_59 chr12:111851506-11185158 0.0006 9_[+1]_63 chr7:101387203-101387283 0.0006 65_[+1]_7 chrX:154843730-154843810 0.00061 42_[+1]_30 chr19:47103684-47103764 0.00063 45_[+1]_27 chr20:33291254-33291334 0.00071 45_[+1]_27 chr22:20244552-20244632 0.00071 43_[+1]_29 chr19:1808500-1808580 0.00071 42_[+1]_30 chr15:78170685-78170765 0.00071 8_[+1]_64 chr15:78026235-78026315 0.00083 53_[+1]_19 chr22:37640564-37640644 0.00083 37_[+1]_35 chr12:124965088-12496516 0.00083 22_[+1]_50 chr19:18209531-18209611 0.00083 59_[+1]_13 chr10:112619672-11261975 0.00083 65_[+1]_7 chr19:954436-954516 0.00083 58_[+1]_14 chr1:26038055-26038135 0.00083 53_[+1]_19 chr9:127075096-127075176 0.00089 50_[+1]_22 chr19:18809315-18809395 0.00089 25_[+1]_47 chr15:34330476-34330556 0.00089 23_[+1]_49 chr19:18285005-18285085 0.00089 42_[+1]_30 chr8:91226967-91227047 0.00089 42_[+1]_30 chr19:3470258-3470338 0.001 35_[+1]_37 chr9:111518378-111518458 0.001 4_[+1]_68 chr20:34687189-34687269 0.001 9_[+1]_63 chr16:58011573-58011653 0.001 14_[+1]_58 chr3:46890133-46890213 0.001 38_[+1]_34 chr1:41958891-41958971 0.001 18_[+1]_54 chr19:17403771-17403851 0.0012 58_[+1]_14 chr16:4936342-4936422 0.0012 61_[+1]_11 chr11:1594772-1594852 0.0012 31_[+1]_41 chrX:47441150-47441230 0.0013 13_[+1]_59 chr19:3229106-3229186 0.0013 64_[+1]_8 chr10:70824671-70824751 0.0013 41_[+1]_31 chr12:109358721-10935880 0.0013 52_[+1]_20 chr16:58426979-58427059 0.0015 48_[+1]_24 chr16:85353453-85353533 0.0015 38_[+1]_34 chr2:120206156-120206236 0.0015 41_[+1]_31 chr11:77789867-77789947 0.0017 45_[+1]_27 chr8:62674101-62674181 0.0017 15_[+1]_57 chr19:35805164-35805244 0.0017 45_[+1]_27 chr7:4968291-4968371 0.0018 12_[+1]_60 chr7:5595632-5595712 0.0018 36_[+1]_36 chrX:47441350-47441430 0.0018 69_[+1]_3 chr20:48926059-48926139 0.0018 51_[+1]_21 chr1:193073417-193073497 0.0018 63_[+1]_9 chr16:24864677-24864757 0.0018 42_[+1]_30 chr12:123446392-12344647 0.0018 30_[+1]_42 chr11:72393473-72393553 0.002 7_[+1]_65 chr7:47419844-47419924 0.0021 15_[+1]_57 chr16:24864476-24864556 0.0021 20_[+1]_52 chr19:18140774-18140854 0.0022 67_[+1]_5 chr6:157097874-157097954 0.0022 43_[+1]_29 chr19:850296-850376 0.0022 52_[+1]_20 chr19:8677069-8677149 0.0023 54_[+1]_18 chr16:22286431-22286511 0.0023 9_[+1]_63 chr19:4181846-4181926 0.0026 41_[+1]_31 chr19:3710645-3710725 0.003 60_[+1]_12 chr19:18243602-18243682 0.003 51_[+1]_21 chr2:131136594-131136674 0.0033 67_[+1]_5 chr19:2739700-2739780 0.0033 28_[+1]_44 chr16:2076590-2076670 0.0033 25_[+1]_47 chr8:62504456-62504536 0.0035 12_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTATACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTATACA width=8 seqs=196 chr1:160492797-160492877 ( 54) TGTATACA 1 chr4:130019808-130019888 ( 63) TGTATACA 1 chr6:15043274-15043354 ( 63) TGTATACA 1 chr1:87258160-87258240 ( 36) TGTATACA 1 chr19:18241818-18241898 ( 73) TGTATACA 1 chr5:1333512-1333592 ( 46) TGTATACA 1 chr3:8819361-8819441 ( 14) TGTATACA 1 chr1:15365316-15365396 ( 57) TGTATACA 1 chr6:35887623-35887703 ( 44) TGTATACA 1 chr19:17355515-17355595 ( 62) TGTATACA 1 chr9:124598312-124598392 ( 3) TGTATACA 1 chr2:131136366-131136446 ( 44) TGTATACA 1 chr19:615636-615716 ( 19) TGTATACA 1 chr7:116499608-116499688 ( 51) TGTATACA 1 chr1:3508030-3508110 ( 33) TGTATACA 1 chr4:103605896-103605976 ( 37) TGTATACA 1 chr5:173109485-173109565 ( 24) TGTATACA 1 chr10:73559718-73559798 ( 48) TGTATACA 1 chrX:135282750-135282830 ( 36) TGTATACA 1 chr1:15365521-15365601 ( 72) TGTATACA 1 chr12:94561042-94561122 ( 8) TGTATACC 1 chr16:28081755-28081835 ( 39) TGTATACC 1 chr15:63495780-63495860 ( 54) TGTATACC 1 chr17:74098797-74098877 ( 44) TGTATACC 1 chr19:1848982-1849062 ( 70) TGTATACC 1 chr19:4570626-4570706 ( 41) TGTATACC 1 chr19:482548-482628 ( 33) TGCATACA 1 chr7:24768198-24768278 ( 3) TGCATACA 1 chr11:68610347-68610427 ( 40) TGCATACA 1 chr19:54868249-54868329 ( 32) TGTATACC 1 chr19:844059-844139 ( 67) TGTATACC 1 chr19:3402993-3403073 ( 31) TGTATACC 1 chr19:50999813-50999893 ( 41) TGCATACA 1 chr1:21571806-21571886 ( 23) TGTATACC 1 chr17:38747126-38747206 ( 29) TGTATACC 1 chr20:35035754-35035834 ( 73) TGTATACC 1 chr19:7679904-7679984 ( 16) TGCATACA 1 chr19:752957-753037 ( 36) TGTATACC 1 chr12:108625417-10862549 ( 73) TGTATACC 1 chr19:30363141-30363221 ( 49) TGCATACA 1 chr7:98923956-98924036 ( 56) TGCATACA 1 chr19:18412321-18412401 ( 45) TGTATACC 1 chr22:29075301-29075381 ( 36) TGTATACC 1 chr18:74535265-74535345 ( 49) TGCATACA 1 chr1:48492824-48492904 ( 34) GGTATACA 1 chr1:2475970-2476050 ( 45) TGTATGCA 1 chrX:223308-223388 ( 70) TGTATGCA 1 chr12:113772465-11377254 ( 1) GGTATACA 1 chr19:12869208-12869288 ( 19) GGTATACA 1 chr9:140063128-140063208 ( 45) TGTATGCA 1 chr19:1858519-1858599 ( 22) GGTATACA 1 chrX:223534-223614 ( 54) TGTATGCA 1 chr19:17795209-17795289 ( 38) GGTATACA 1 chr19:3719256-3719336 ( 26) GGTATACA 1 chr19:10631527-10631607 ( 20) GGTATACA 1 chr12:124978897-12497897 ( 31) GGTATACA 1 chr19:5189019-5189099 ( 28) GGTATACA 1 chr19:3371581-3371661 ( 54) GGTATACA 1 chrX:223762-223842 ( 38) TGTATGCA 1 chr19:11313707-11313787 ( 38) GGTATACA 1 chr19:1515112-1515192 ( 70) GGTATACA 1 chr20:31351835-31351915 ( 28) GGTATACA 1 chr19:47530246-47530326 ( 23) TGTATGCA 1 chr19:17503841-17503921 ( 31) GGTATACA 1 chr17:55558354-55558434 ( 41) GGTATACA 1 chr19:702585-702665 ( 54) TGTGTACA 1 chr18:43191957-43192037 ( 19) TGTGTACA 1 chr19:3398265-3398345 ( 69) TGCATACC 1 chr19:47815823-47815903 ( 71) TGCATACC 1 chr12:125170956-12517103 ( 18) GGCATACA 1 chr20:37519339-37519419 ( 7) GGCATACA 1 chr19:514022-514102 ( 3) TGTACACA 1 chr17:624148-624228 ( 60) AGTATACA 1 chr17:623930-624010 ( 43) AGTATACA 1 chr11:63868413-63868493 ( 57) TGCATGCA 1 chr12:123436906-12343698 ( 17) GGCATACA 1 chr17:55332667-55332747 ( 63) TGTATGCC 1 chr2:130939494-130939574 ( 39) TGTATGCC 1 chr12:111706916-11170699 ( 23) AGTATACA 1 chr1:145738770-145738850 ( 28) AGTATACA 1 chr20:48531374-48531454 ( 60) TGTATGCC 1 chr19:3455767-3455847 ( 35) GGCATACA 1 chr16:88536360-88536440 ( 43) GGCATACA 1 chr19:3775468-3775548 ( 39) TGTATGCC 1 chr13:114448618-11444869 ( 57) GGCATACA 1 chr2:101223508-101223588 ( 52) TGCATGCA 1 chr19:593186-593266 ( 23) AGTATACA 1 chr10:6623890-6623970 ( 23) GGCATACA 1 chr17:27088339-27088419 ( 1) AGTATACA 1 chr20:50202553-50202633 ( 40) TGCATGCA 1 chr5:156890889-156890969 ( 41) TGTATGCC 1 chr19:4796977-4797057 ( 49) TGTATGCC 1 chr20:48912060-48912140 ( 66) GGCATACA 1 chr14:91885195-91885275 ( 43) AGTATACA 1 chr19:33932457-33932537 ( 72) TGTATGCC 1 chr4:88033495-88033575 ( 20) AGTATACA 1 chr16:70325007-70325087 ( 41) AGTATACA 1 chr10:6506988-6507068 ( 32) TGTATACT 1 chr1:12636627-12636707 ( 38) TGTATACT 1 chr19:3336502-3336582 ( 35) GGTATGCA 1 chr1:224752942-224753022 ( 24) TGTATACT 1 chr9:138775695-138775775 ( 32) TGTATACT 1 chr6:160940359-160940439 ( 51) TGTATTCA 1 chr19:10198133-10198213 ( 56) TGTATTCA 1 chr8:145607600-145607680 ( 57) TGTATTCA 1 chr8:62504257-62504337 ( 33) TGTAAACA 1 chrX:47438998-47439078 ( 32) TGTAAACA 1 chr3:14847841-14847921 ( 26) TGTGTACC 1 chr9:35489462-35489542 ( 1) TGTAAACA 1 chr10:72983213-72983293 ( 21) TGTGTACC 1 chr3:14380533-14380613 ( 60) TGTGTACC 1 chr15:52432225-52432305 ( 44) TGTAAACA 1 chr2:32514363-32514443 ( 8) TGTAAACA 1 chr20:32320324-32320404 ( 41) TGTGTGCA 1 chr21:45245163-45245243 ( 61) TGTGTGCA 1 chr6:42688753-42688833 ( 48) TGCATGCC 1 chr1:31331925-31332005 ( 62) TGCATGCC 1 chr15:68175381-68175461 ( 62) TGCATGCC 1 chr19:513819-513899 ( 66) TGCACACA 1 chr16:2021624-2021704 ( 3) TGCACACA 1 chr11:112147917-11214799 ( 16) AGCATACA 1 chr10:76998247-76998327 ( 37) AGCATACA 1 chr16:1142837-1142917 ( 57) TGCACACA 1 chr19:18243391-18243471 ( 24) TGCATGCC 1 chr16:89641699-89641779 ( 28) TGCACACA 1 chr16:66988232-66988312 ( 66) TGCATGCC 1 chr10:112247704-11224778 ( 35) AGTATGCA 1 chr19:7989339-7989419 ( 33) GGCATGCA 1 chr7:99718486-99718566 ( 72) AGTATGCA 1 chr19:39174767-39174847 ( 48) GGTACACA 1 chr9:139623072-139623152 ( 42) GGTACACA 1 chr9:117424453-117424533 ( 24) GGTACACA 1 chr6:30539976-30540056 ( 34) GGTACACA 1 chr9:33620120-33620200 ( 41) TGTATGCT 1 chr9:127019801-127019881 ( 14) TGCATTCA 1 chr12:111851506-11185158 ( 10) TGCATTCA 1 chr7:101387203-101387283 ( 66) TGTATTCC 1 chrX:154843730-154843810 ( 43) GGTATTCA 1 chr19:47103684-47103764 ( 46) TGAATACC 1 chr20:33291254-33291334 ( 46) TGAATGCA 1 chr22:20244552-20244632 ( 44) TGAATGCA 1 chr19:1808500-1808580 ( 43) TGAATGCA 1 chr15:78170685-78170765 ( 9) TGTAAACC 1 chr15:78026235-78026315 ( 54) TGTGTGCC 1 chr22:37640564-37640644 ( 38) TGTGTGCC 1 chr12:124965088-12496516 ( 23) TGTGCACA 1 chr19:18209531-18209611 ( 60) TGTGTGCC 1 chr10:112619672-11261975 ( 66) TGTAAGCA 1 chr19:954436-954516 ( 59) TGTGTGCC 1 chr1:26038055-26038135 ( 54) TGTGTGCC 1 chr9:127075096-127075176 ( 51) TGTGTACT 1 chr19:18809315-18809395 ( 26) TGTGTACT 1 chr15:34330476-34330556 ( 24) TGTGTACT 1 chr19:18285005-18285085 ( 43) TGTGTACT 1 chr8:91226967-91227047 ( 43) TGTGTACT 1 chr19:3470258-3470338 ( 36) GGCACACA 1 chr9:111518378-111518458 ( 5) GGCACACA 1 chr20:34687189-34687269 ( 10) AGTACACA 1 chr16:58011573-58011653 ( 15) GGCACACA 1 chr3:46890133-46890213 ( 39) GGCATGCC 1 chr1:41958891-41958971 ( 19) GGCACACA 1 chr19:17403771-17403851 ( 59) AGTATTCA 1 chr16:4936342-4936422 ( 62) GGTATTCC 1 chr11:1594772-1594852 ( 32) TGAGTACA 1 chrX:47441150-47441230 ( 14) TGTATAAA 1 chr19:3229106-3229186 ( 65) TGTGAACA 1 chr10:70824671-70824751 ( 42) AGAATACA 1 chr12:109358721-10935880 ( 53) TGAACACA 1 chr16:58426979-58427059 ( 49) TGAATACT 1 chr16:85353453-85353533 ( 39) GGCAAACA 1 chr2:120206156-120206236 ( 42) AGTAAACA 1 chr11:77789867-77789947 ( 46) GGCGTGCA 1 chr8:62674101-62674181 ( 16) TTTATACA 1 chr19:35805164-35805244 ( 46) TTTATACA 1 chr7:4968291-4968371 ( 13) TGTGTGCT 1 chr7:5595632-5595712 ( 37) GGCACACC 1 chrX:47441350-47441430 ( 70) TGTGTGCT 1 chr20:48926059-48926139 ( 52) TGTGTTCC 1 chr1:193073417-193073497 ( 64) TGTGTGCT 1 chr16:24864677-24864757 ( 43) GGCACACC 1 chr12:123446392-12344647 ( 31) TGTAATCA 1 chr11:72393473-72393553 ( 8) GGTGTTCA 1 chr7:47419844-47419924 ( 16) AGCATTCA 1 chr16:24864476-24864556 ( 21) TGCACTCA 1 chr19:18140774-18140854 ( 68) TGTTTACA 1 chr6:157097874-157097954 ( 44) TGAGTACC 1 chr19:850296-850376 ( 53) TGTAGACA 1 chr19:8677069-8677149 ( 55) TGCATAAA 1 chr16:22286431-22286511 ( 10) TGAGTGCA 1 chr19:4181846-4181926 ( 42) AGAATGCA 1 chr19:3710645-3710725 ( 61) TGTGCACT 1 chr19:18243602-18243682 ( 52) TGTAATCC 1 chr2:131136594-131136674 ( 68) GGCACACT 1 chr19:2739700-2739780 ( 29) TGCACGCT 1 chr16:2076590-2076670 ( 26) GGTATCCA 1 chr8:62504456-62504536 ( 13) TGTGTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTATACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.99869 E= 2.1e-117 -144 -1426 -14 144 -1426 -1426 204 -463 -222 4 -1426 146 168 -1426 -65 -563 -210 -112 -556 170 139 -558 -7 -172 -410 201 -1426 -1426 135 1 -1426 -154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTATACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 196 E= 2.1e-117 0.096939 0.000000 0.219388 0.683673 0.000000 0.000000 0.989796 0.010204 0.056122 0.250000 0.000000 0.693878 0.841837 0.000000 0.153061 0.005102 0.061224 0.112245 0.005102 0.821429 0.688776 0.005102 0.229592 0.076531 0.015306 0.984694 0.000000 0.000000 0.668367 0.244898 0.000000 0.086735 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTATACA MEME-1 regular expression -------------------------------------------------------------------------------- [TG]G[TC]AT[AG]C[AC] -------------------------------------------------------------------------------- Time 4.93 secs. ******************************************************************************** ******************************************************************************** MOTIF TRRGCRCY MEME-2 width = 8 sites = 141 llr = 991 E-value = 5.4e-071 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRRGCRCY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :55::5:: pos.-specific C 2:::7:a5 probability G :45a:5:: matrix T 81::3::5 bits 2.1 * * 1.8 * * 1.6 * * 1.4 * * * Relative 1.2 * ** * Entropy 1.0 * ****** (10.1 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAAGCGCC consensus GG TA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRGCRCY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:36248059-36248139 14 2.81e-05 GGccatttat taagcgcc tgctggatgc chr19:752957-753037 25 2.81e-05 cagtatttat taggcgcc tgctgtatac chr19:30363141-30363221 58 2.81e-05 GTGCATACAG TAGGCGCC CAAGCGGGGG chr7:98923956-98924036 65 2.81e-05 CTGCATACAG TAGGCGCC CATAGGAT chr18:74535265-74535345 58 2.81e-05 GTGCATACAG TAGGCGCC ATTGTGATCC chr7:4968291-4968371 56 5.87e-05 GAGCATTTAT TAAGCACC CTCTGTGTGC chrX:223308-223388 59 5.87e-05 CAGTGCAGAT TAGGCACC TGTTGTATGC chr11:63868413-63868493 46 5.87e-05 GTGCatttat taagcacc aactgcatgc chrX:223534-223614 43 5.87e-05 CAGCACAGAT TAGGCACC TGTTGTATGC chr17:55332667-55332747 52 5.87e-05 ccgcatttat taagcacc tactgtatgc chr8:62504257-62504337 42 5.87e-05 ctgtaaacag taggcacc gagactgaag chr3:14847841-14847921 47 5.87e-05 catcatttat taagcacc cccctatatc chrX:223762-223842 27 5.87e-05 CAGCACAGAT TAGGCACC TGTTGTATGC chr19:17357677-17357757 27 5.87e-05 cagcatttat taagcacc ctttgtatgc chr19:18243391-18243471 13 5.87e-05 TGGTAGGTGG taagcacc tactgcatgc chr19:7679904-7679984 25 5.87e-05 gtgcatacag taggcacc aactaagtgc chr19:47530246-47530326 12 5.87e-05 CTCCCAGTAT TAGGCACC TACTGTATGC chr20:39968873-39968953 54 1.14e-04 gaggtactga taagcgct ggagtgtaag chr9:127075096-127075176 40 1.14e-04 gagcatgcat tgagcgcc tgctgtgtac chr19:1848982-1849062 59 1.14e-04 caacaaatat tgagcgcc tactgtatac chr19:7989339-7989419 42 1.14e-04 tggcatgcag taagcgct caataatagc chr11:75063665-75063745 67 1.14e-04 tggcctcccc tgagcgcc tgcata chr11:1594772-1594852 54 1.14e-04 TGGCGATTAA TAAGCGCT TGCAGCTCCC chr12:54610663-54610743 38 1.14e-04 aagcatttat tgagcgcc tactatatgt chr19:18285005-18285085 32 1.14e-04 AAGGGTTCAA TGAGCGCC TACTGTGTAC chr4:77869118-77869198 50 1.14e-04 caacacttat tgagcgcc tactgtatgt chr8:128980129-128980209 26 1.14e-04 tgacatttat tgagcgcc tgtagtatgt chr20:39969077-39969157 48 1.14e-04 aggggacgtt tgagcGCC AGGAGCCGCG chr13:114448618-11444869 8 1.14e-04 CATACAG TAGGCGCT CCATCCACGC chr19:3398265-3398345 58 1.14e-04 GCGCacttat tgagcgcc agctgcatac chr10:6623890-6623970 32 1.14e-04 tggcatacag taggcgct cattgggtat chr19:10198133-10198213 34 1.14e-04 CTGCAAACAG TAGGCGCT CATTATGTGC chr22:29075301-29075381 25 1.14e-04 CTGGGCGCAT TAGGCGCT GACTGTATAC chr19:850296-850376 62 1.14e-04 GTGTAGACAG TAGGCGCT TACTAAGTGC chr19:33932457-33932537 61 1.14e-04 ggagcattta tgagcgcc tgctgtatgc chr20:48334286-48334366 56 1.14e-04 cagcagccag taggcgct gaataattgt chr15:78026235-78026315 43 1.74e-04 TCAcatctat tgagcacc aactgtgtgc chr1:31331925-31332005 51 1.74e-04 aggcatttgt tgagcacc agctgcatgc chr9:127321279-127321359 70 1.74e-04 aaacagtcaa tgagcacc aac chr19:50042596-50042676 7 1.74e-04 atttat tgagcacc tactctatac chr19:702585-702665 43 1.74e-04 gagcatttat tgagcacc tactgtgtac chr10:70824671-70824751 59 1.74e-04 atgcatttat tgagcacc tactgagtac chr19:513819-513899 22 1.74e-04 ccacatttac tgagcacC TATTGCATCC chr17:74098797-74098877 33 1.74e-04 ACTcacttat tgagcacc tattgtatac chr19:514022-514102 24 1.74e-04 CCAGCATTAC TGAGCACC CACTGCACAC chr1:12636627-12636707 27 1.74e-04 ATGCATTTAT TGAGCACC TTCTGTATAC chr19:18362687-18362767 15 1.74e-04 tgacatacac taggcact taataaatgc chr20:34687189-34687269 19 1.74e-04 TAGTACACAG TAGGCACT CAATACCTAC chr20:48926059-48926139 42 1.74e-04 aaacatttat tgagcacc actgtgttcc chr19:54868249-54868329 21 1.74e-04 GTGcatttat tgagcacc tactgtatac chr15:63221301-63221381 65 1.74e-04 ATTCCCtcat tgagcacc cactgaat chr9:124598312-124598392 53 1.74e-04 gagtacttta tgggcacc ttttgtttaa chr19:844059-844139 56 1.74e-04 cagcattcat tgagcacc cactgtatac chr3:14380533-14380613 49 1.74e-04 aagcatttat tgagcacc tactgtgtac chr6:160940359-160940439 40 1.74e-04 AAGGATTTAT TGAGCACC TACTGTATTC chr8:142071478-142071558 72 1.74e-04 atgcacctat tgagcacc t chr20:31351835-31351915 37 1.74e-04 tggtatacag taagcact caatacatgt chr6:13396380-13396460 41 1.74e-04 catcatttgt tgagcacc tactgtttgc chr19:1808500-1808580 32 1.74e-04 cagcatttac tgagcacc tgctgaatgc chr19:1292356-1292436 65 1.74e-04 cactcattat tgagcacc actgtatg chr19:4796977-4797057 38 1.74e-04 gagcatttat tgagcacc tactgtatgc chr7:2720633-2720713 27 1.74e-04 TCCAGGACGC TGAGCACC GACTGTTTGC chr10:73559718-73559798 37 1.74e-04 GCacagtgtc tgagcacc tactgtatac chr18:43191957-43192037 8 1.74e-04 tatttat tgagcacc tattgtgtac chr19:17396723-17396803 13 1.74e-04 GAGCAATTAT TGAGCACC AACTTTGAAC chr1:26038055-26038135 44 1.74e-04 ctgcatgtat tgagcacc actgtgtgcc chr1:2475970-2476050 69 2.30e-04 GCTGAGTAAG TGAGCACT TGCC chr19:18140774-18140854 12 2.30e-04 CACTGTGAGT TGGGCACT GTGACAGCGT chr19:482548-482628 11 2.30e-04 CCTTAGTGGA TGGGCACT TATTAATCGC chr10:72983213-72983293 10 2.30e-04 TGCTTTCTT TGAGCACT TACTGTGTAC chr7:47419844-47419924 70 2.30e-04 AGTTCCCTTT TGGGCACT CCT chr16:22286431-22286511 56 2.30e-04 GGCCTGGAGC TGGGCACT GAGTATTTGC chr19:18412321-18412401 34 2.30e-04 Aagcatttat tgagcact tgctgtatac chr16:70325007-70325087 32 2.30e-04 taccatttat tgagcact tagtatacag chr20:33291254-33291334 28 2.59e-04 GGTGCAATAG TAGGTGCC TAATAAATGT chr8:28243892-28243972 49 2.59e-04 CGGCGCTCAA TAAGTGCC CGAGCGACTC chr19:3775468-3775548 54 2.59e-04 gcctgccttc taggtgcc cctcccttca chr19:3371581-3371661 63 2.59e-04 tggtatacag taggtgcc aaataagtgc chr19:11313707-11313787 47 2.90e-04 gggtatacag taggtacc ccataaatgc chr12:108625417-10862549 62 2.90e-04 aagcagttat taagtacc tgctgtatac chr20:37519339-37519419 16 3.48e-04 tggcatacag taggtgct caatatgtgc chr5:176131495-176131575 28 3.48e-04 atacatacag taagtgct caatacatgc chr19:11362464-11362544 9 3.48e-04 gtatacag taggtgct cagtaaatgt chrX:154843730-154843810 70 3.48e-04 taaacattaa tgagtgcc tac chr22:37640564-37640644 27 3.48e-04 Gagcatttaa tgagtgcc tgctgtgtgc chr19:12869208-12869288 28 3.48e-04 tggtatacag taggtgct caataaattg chr9:127019801-127019881 34 3.48e-04 tggtgcacaa taagtgct tgttACTGTG chr12:123436906-12343698 26 3.48e-04 gggcatacag taggtgct caataaaggt chr11:72393473-72393553 17 3.48e-04 tggtgttcaa taagtgct tgttgagtgC chr19:39174767-39174847 57 3.48e-04 tggtacacac taagtgct caataaatgt chr19:17795209-17795289 47 3.48e-04 tggtatacag taggtgct caattaatgc chr16:88536360-88536440 52 3.48e-04 gggcatacag taggtgct ccataaatac chr16:58011573-58011653 24 3.48e-04 tggcacacag taggtgct aaataaatgt chr19:5189019-5189099 37 3.48e-04 tggtatacag taggtgct caAGCAGAGA chr1:113086707-113086787 18 3.48e-04 taacatgcag taggtgct caataaatgt chr5:173109485-173109565 33 3.48e-04 ctgtatacag taggtgct caataaatga chr11:78074412-78074492 28 3.48e-04 tggtatatag taggtgct caataaatgt chr20:50202553-50202633 23 3.48e-04 tagcatccag taggtgct caataaatat chr2:120206156-120206236 51 3.48e-04 aagtaaacag taggtgct cagtaaatgc chr6:42688753-42688833 37 4.10e-04 aagcatttaa tgagtacc tgctgcatgc chrX:135282750-135282830 55 4.10e-04 agccctggat taggtact ggggCCCCCT chr15:63495780-63495860 43 4.37e-04 taacatttat tgagtgct tactgtatac chr2:130939494-130939574 58 4.37e-04 ggcactgggc tgggtgct gccacctaag chr9:139623072-139623152 62 4.37e-04 AGGCGCCTAA TGAGTGCT GAGGCGGGCG chr19:47815823-47815903 60 4.37e-04 tagcatttat tgagtgct tactgcatac chr19:47103684-47103764 8 4.95e-04 catacag caggcgcc taattgatgc chr16:89641699-89641779 37 4.95e-04 ctgcacacaa caggcgcc cactaaatgc chr12:124978897-12497897 40 5.24e-04 TGGTATACAG CAAGCACC CCATAAATGC chr19:18809315-18809395 6 5.77e-04 ctcag caggcgct cagcaggcac chr10:76998247-76998327 46 5.77e-04 gagcatacag caggcgct aaataaatgc chr1:11332768-11332848 7 5.77e-04 acacag caggcgct caataaatgc chr8:62674101-62674181 25 6.35e-04 ctttatacag caggcact caacctttgt chr10:6506988-6507068 1 6.35e-04 . CAGGCACT TAGGGCACTT chr19:615636-615716 59 6.35e-04 CTCTACACGG CAAGCACT GTGTGCGCAC chr21:45245163-45245243 50 6.35e-04 GTGCACACAG CAGGCACT CCATGTGTGC chr14:91885195-91885275 52 6.35e-04 AAGTATACAG CAGGCACT AAATGGCTGC chr10:70884807-70884887 65 7.16e-04 TTCTCTTCAT TTAGCGCC TACTGTAT chr1:40916329-40916409 28 7.16e-04 GAGTAAATAC TTGGCGCC TCCAGCTGCT chr16:28081755-28081835 28 7.46e-04 ACACATTGAT TTGGCACC GACTGTATAC chr19:4570626-4570706 30 7.46e-04 taataattat ttggcacc agctgtatac chr19:3336502-3336582 48 7.46e-04 ATGCAATTAT TTAGCACC AACTGTGTAC chr20:35035754-35035834 62 7.46e-04 aggcttttat ttagcacc tgctgtatac chr16:24864476-24864556 52 7.46e-04 agcacagagc ttggcacc cagatggtgc chr16:66639522-66639602 67 7.74e-04 TCCCAGGAAC TTGGCGCT TCCTGC chr19:593186-593266 32 8.33e-04 CAGTATACAG CAGGTGCC ACATATTTGC chr10:112247704-11224778 44 9.73e-04 aagtatgcag caggtgct caataaatgt chr15:68175381-68175461 51 9.73e-04 aagCACTTAT TCGGCACC TACTGCATGC chr19:1858519-1858599 31 9.73e-04 tggtatacag caggtgct taatgcatat chr12:111706916-11170699 32 9.73e-04 CAGTATACAG CAGGTGCT Tactaagtgt chr11:68610347-68610427 49 9.73e-04 CTGCATACAG CAGGTGCT CCATAAATGC chr9:117424453-117424533 3 9.73e-04 gt caagtgct ttgcagggta chr11:112147917-11214799 25 9.73e-04 GAGCATACAG CAGGTGCT CAATAGTTGC chr1:21571806-21571886 32 9.73e-04 ttgtatacca caggtgct caataaatgc chr12:124965088-12496516 10 9.73e-04 AGCAAACCA CAGGTGCT TAATCTGTGC chr17:38747126-38747206 18 9.73e-04 taatacttat tcagcacc tactgtatac chr19:850595-850675 12 9.73e-04 TGCGTGTCCC CGGGTGCC CTCGCCCCGC chr19:4181846-4181926 17 1.06e-03 GCGCACACCA TCagcgct cattaaatgc chr7:98924156-98924236 21 1.06e-03 TGCACCCTTC TCGGCGCT CTTATTCATT chr19:50999813-50999893 50 1.06e-03 GTGCATACAG CAGGTACT CCATAAATGC chr7:5595632-5595712 58 1.12e-03 AAGCAAACAC CGGGTGCT CCATAAATGC chr19:18209531-18209611 23 1.12e-03 AACCTGGGAT TCAGcact tacccaacga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRGCRCY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:36248059-36248139 2.8e-05 13_[+2]_59 chr19:752957-753037 2.8e-05 24_[+2]_48 chr19:30363141-30363221 2.8e-05 57_[+2]_15 chr7:98923956-98924036 2.8e-05 64_[+2]_8 chr18:74535265-74535345 2.8e-05 57_[+2]_15 chr7:4968291-4968371 5.9e-05 55_[+2]_17 chrX:223308-223388 5.9e-05 58_[+2]_14 chr11:63868413-63868493 5.9e-05 45_[+2]_27 chrX:223534-223614 5.9e-05 42_[+2]_30 chr17:55332667-55332747 5.9e-05 51_[+2]_21 chr8:62504257-62504337 5.9e-05 41_[+2]_31 chr3:14847841-14847921 5.9e-05 46_[+2]_26 chrX:223762-223842 5.9e-05 26_[+2]_46 chr19:17357677-17357757 5.9e-05 26_[+2]_46 chr19:18243391-18243471 5.9e-05 12_[+2]_60 chr19:7679904-7679984 5.9e-05 24_[+2]_48 chr19:47530246-47530326 5.9e-05 11_[+2]_61 chr20:39968873-39968953 0.00011 53_[+2]_19 chr9:127075096-127075176 0.00011 39_[+2]_33 chr19:1848982-1849062 0.00011 58_[+2]_14 chr19:7989339-7989419 0.00011 41_[+2]_31 chr11:75063665-75063745 0.00011 66_[+2]_6 chr11:1594772-1594852 0.00011 53_[+2]_19 chr12:54610663-54610743 0.00011 37_[+2]_35 chr19:18285005-18285085 0.00011 31_[+2]_41 chr4:77869118-77869198 0.00011 49_[+2]_23 chr8:128980129-128980209 0.00011 25_[+2]_47 chr20:39969077-39969157 0.00011 47_[+2]_25 chr13:114448618-11444869 0.00011 7_[+2]_65 chr19:3398265-3398345 0.00011 57_[+2]_15 chr10:6623890-6623970 0.00011 31_[+2]_41 chr19:10198133-10198213 0.00011 33_[+2]_39 chr22:29075301-29075381 0.00011 24_[+2]_48 chr19:850296-850376 0.00011 61_[+2]_11 chr19:33932457-33932537 0.00011 60_[+2]_12 chr20:48334286-48334366 0.00011 55_[+2]_17 chr15:78026235-78026315 0.00017 42_[+2]_30 chr1:31331925-31332005 0.00017 50_[+2]_22 chr9:127321279-127321359 0.00017 69_[+2]_3 chr19:50042596-50042676 0.00017 6_[+2]_66 chr19:702585-702665 0.00017 42_[+2]_30 chr10:70824671-70824751 0.00017 58_[+2]_14 chr19:513819-513899 0.00017 21_[+2]_51 chr17:74098797-74098877 0.00017 32_[+2]_40 chr19:514022-514102 0.00017 23_[+2]_49 chr1:12636627-12636707 0.00017 26_[+2]_46 chr19:18362687-18362767 0.00017 14_[+2]_58 chr20:34687189-34687269 0.00017 18_[+2]_54 chr20:48926059-48926139 0.00017 41_[+2]_31 chr19:54868249-54868329 0.00017 20_[+2]_52 chr15:63221301-63221381 0.00017 64_[+2]_8 chr9:124598312-124598392 0.00017 52_[+2]_20 chr19:844059-844139 0.00017 55_[+2]_17 chr3:14380533-14380613 0.00017 48_[+2]_24 chr6:160940359-160940439 0.00017 39_[+2]_33 chr8:142071478-142071558 0.00017 71_[+2]_1 chr20:31351835-31351915 0.00017 36_[+2]_36 chr6:13396380-13396460 0.00017 40_[+2]_32 chr19:1808500-1808580 0.00017 31_[+2]_41 chr19:1292356-1292436 0.00017 64_[+2]_8 chr19:4796977-4797057 0.00017 37_[+2]_35 chr7:2720633-2720713 0.00017 26_[+2]_46 chr10:73559718-73559798 0.00017 36_[+2]_36 chr18:43191957-43192037 0.00017 7_[+2]_65 chr19:17396723-17396803 0.00017 12_[+2]_60 chr1:26038055-26038135 0.00017 43_[+2]_29 chr1:2475970-2476050 0.00023 68_[+2]_4 chr19:18140774-18140854 0.00023 11_[+2]_61 chr19:482548-482628 0.00023 10_[+2]_62 chr10:72983213-72983293 0.00023 9_[+2]_63 chr7:47419844-47419924 0.00023 69_[+2]_3 chr16:22286431-22286511 0.00023 55_[+2]_17 chr19:18412321-18412401 0.00023 33_[+2]_39 chr16:70325007-70325087 0.00023 31_[+2]_41 chr20:33291254-33291334 0.00026 27_[+2]_45 chr8:28243892-28243972 0.00026 48_[+2]_24 chr19:3775468-3775548 0.00026 53_[+2]_19 chr19:3371581-3371661 0.00026 62_[+2]_10 chr19:11313707-11313787 0.00029 46_[+2]_26 chr12:108625417-10862549 0.00029 61_[+2]_11 chr20:37519339-37519419 0.00035 15_[+2]_57 chr5:176131495-176131575 0.00035 27_[+2]_45 chr19:11362464-11362544 0.00035 8_[+2]_64 chrX:154843730-154843810 0.00035 69_[+2]_3 chr22:37640564-37640644 0.00035 26_[+2]_46 chr19:12869208-12869288 0.00035 27_[+2]_45 chr9:127019801-127019881 0.00035 33_[+2]_39 chr12:123436906-12343698 0.00035 25_[+2]_47 chr11:72393473-72393553 0.00035 16_[+2]_56 chr19:39174767-39174847 0.00035 56_[+2]_16 chr19:17795209-17795289 0.00035 46_[+2]_26 chr16:88536360-88536440 0.00035 51_[+2]_21 chr16:58011573-58011653 0.00035 23_[+2]_49 chr19:5189019-5189099 0.00035 36_[+2]_36 chr1:113086707-113086787 0.00035 17_[+2]_55 chr5:173109485-173109565 0.00035 32_[+2]_40 chr11:78074412-78074492 0.00035 27_[+2]_45 chr20:50202553-50202633 0.00035 22_[+2]_50 chr2:120206156-120206236 0.00035 50_[+2]_22 chr6:42688753-42688833 0.00041 36_[+2]_36 chrX:135282750-135282830 0.00041 54_[+2]_18 chr15:63495780-63495860 0.00044 42_[+2]_30 chr2:130939494-130939574 0.00044 57_[+2]_15 chr9:139623072-139623152 0.00044 61_[+2]_11 chr19:47815823-47815903 0.00044 59_[+2]_13 chr19:47103684-47103764 0.00049 7_[+2]_65 chr16:89641699-89641779 0.00049 36_[+2]_36 chr12:124978897-12497897 0.00052 39_[+2]_33 chr19:18809315-18809395 0.00058 5_[+2]_67 chr10:76998247-76998327 0.00058 45_[+2]_27 chr1:11332768-11332848 0.00058 6_[+2]_66 chr8:62674101-62674181 0.00064 24_[+2]_48 chr10:6506988-6507068 0.00064 [+2]_72 chr19:615636-615716 0.00064 58_[+2]_14 chr21:45245163-45245243 0.00064 49_[+2]_23 chr14:91885195-91885275 0.00064 51_[+2]_21 chr10:70884807-70884887 0.00072 64_[+2]_8 chr1:40916329-40916409 0.00072 27_[+2]_45 chr16:28081755-28081835 0.00075 27_[+2]_45 chr19:4570626-4570706 0.00075 29_[+2]_43 chr19:3336502-3336582 0.00075 47_[+2]_25 chr20:35035754-35035834 0.00075 61_[+2]_11 chr16:24864476-24864556 0.00075 51_[+2]_21 chr16:66639522-66639602 0.00077 66_[+2]_6 chr19:593186-593266 0.00083 31_[+2]_41 chr10:112247704-11224778 0.00097 43_[+2]_29 chr15:68175381-68175461 0.00097 50_[+2]_22 chr19:1858519-1858599 0.00097 30_[+2]_42 chr12:111706916-11170699 0.00097 31_[+2]_41 chr11:68610347-68610427 0.00097 48_[+2]_24 chr9:117424453-117424533 0.00097 2_[+2]_70 chr11:112147917-11214799 0.00097 24_[+2]_48 chr1:21571806-21571886 0.00097 31_[+2]_41 chr12:124965088-12496516 0.00097 9_[+2]_63 chr17:38747126-38747206 0.00097 17_[+2]_55 chr19:850595-850675 0.00097 11_[+2]_61 chr19:4181846-4181926 0.0011 16_[+2]_56 chr7:98924156-98924236 0.0011 20_[+2]_52 chr19:50999813-50999893 0.0011 49_[+2]_23 chr7:5595632-5595712 0.0011 57_[+2]_15 chr19:18209531-18209611 0.0011 22_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRGCRCY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRRGCRCY width=8 seqs=141 chr19:36248059-36248139 ( 14) TAAGCGCC 1 chr19:752957-753037 ( 25) TAGGCGCC 1 chr19:30363141-30363221 ( 58) TAGGCGCC 1 chr7:98923956-98924036 ( 65) TAGGCGCC 1 chr18:74535265-74535345 ( 58) TAGGCGCC 1 chr7:4968291-4968371 ( 56) TAAGCACC 1 chrX:223308-223388 ( 59) TAGGCACC 1 chr11:63868413-63868493 ( 46) TAAGCACC 1 chrX:223534-223614 ( 43) TAGGCACC 1 chr17:55332667-55332747 ( 52) TAAGCACC 1 chr8:62504257-62504337 ( 42) TAGGCACC 1 chr3:14847841-14847921 ( 47) TAAGCACC 1 chrX:223762-223842 ( 27) TAGGCACC 1 chr19:17357677-17357757 ( 27) TAAGCACC 1 chr19:18243391-18243471 ( 13) TAAGCACC 1 chr19:7679904-7679984 ( 25) TAGGCACC 1 chr19:47530246-47530326 ( 12) TAGGCACC 1 chr20:39968873-39968953 ( 54) TAAGCGCT 1 chr9:127075096-127075176 ( 40) TGAGCGCC 1 chr19:1848982-1849062 ( 59) TGAGCGCC 1 chr19:7989339-7989419 ( 42) TAAGCGCT 1 chr11:75063665-75063745 ( 67) TGAGCGCC 1 chr11:1594772-1594852 ( 54) TAAGCGCT 1 chr12:54610663-54610743 ( 38) TGAGCGCC 1 chr19:18285005-18285085 ( 32) TGAGCGCC 1 chr4:77869118-77869198 ( 50) TGAGCGCC 1 chr8:128980129-128980209 ( 26) TGAGCGCC 1 chr20:39969077-39969157 ( 48) TGAGCGCC 1 chr13:114448618-11444869 ( 8) TAGGCGCT 1 chr19:3398265-3398345 ( 58) TGAGCGCC 1 chr10:6623890-6623970 ( 32) TAGGCGCT 1 chr19:10198133-10198213 ( 34) TAGGCGCT 1 chr22:29075301-29075381 ( 25) TAGGCGCT 1 chr19:850296-850376 ( 62) TAGGCGCT 1 chr19:33932457-33932537 ( 61) TGAGCGCC 1 chr20:48334286-48334366 ( 56) TAGGCGCT 1 chr15:78026235-78026315 ( 43) TGAGCACC 1 chr1:31331925-31332005 ( 51) TGAGCACC 1 chr9:127321279-127321359 ( 70) TGAGCACC 1 chr19:50042596-50042676 ( 7) TGAGCACC 1 chr19:702585-702665 ( 43) TGAGCACC 1 chr10:70824671-70824751 ( 59) TGAGCACC 1 chr19:513819-513899 ( 22) TGAGCACC 1 chr17:74098797-74098877 ( 33) TGAGCACC 1 chr19:514022-514102 ( 24) TGAGCACC 1 chr1:12636627-12636707 ( 27) TGAGCACC 1 chr19:18362687-18362767 ( 15) TAGGCACT 1 chr20:34687189-34687269 ( 19) TAGGCACT 1 chr20:48926059-48926139 ( 42) TGAGCACC 1 chr19:54868249-54868329 ( 21) TGAGCACC 1 chr15:63221301-63221381 ( 65) TGAGCACC 1 chr9:124598312-124598392 ( 53) TGGGCACC 1 chr19:844059-844139 ( 56) TGAGCACC 1 chr3:14380533-14380613 ( 49) TGAGCACC 1 chr6:160940359-160940439 ( 40) TGAGCACC 1 chr8:142071478-142071558 ( 72) TGAGCACC 1 chr20:31351835-31351915 ( 37) TAAGCACT 1 chr6:13396380-13396460 ( 41) TGAGCACC 1 chr19:1808500-1808580 ( 32) TGAGCACC 1 chr19:1292356-1292436 ( 65) TGAGCACC 1 chr19:4796977-4797057 ( 38) TGAGCACC 1 chr7:2720633-2720713 ( 27) TGAGCACC 1 chr10:73559718-73559798 ( 37) TGAGCACC 1 chr18:43191957-43192037 ( 8) TGAGCACC 1 chr19:17396723-17396803 ( 13) TGAGCACC 1 chr1:26038055-26038135 ( 44) TGAGCACC 1 chr1:2475970-2476050 ( 69) TGAGCACT 1 chr19:18140774-18140854 ( 12) TGGGCACT 1 chr19:482548-482628 ( 11) TGGGCACT 1 chr10:72983213-72983293 ( 10) TGAGCACT 1 chr7:47419844-47419924 ( 70) TGGGCACT 1 chr16:22286431-22286511 ( 56) TGGGCACT 1 chr19:18412321-18412401 ( 34) TGAGCACT 1 chr16:70325007-70325087 ( 32) TGAGCACT 1 chr20:33291254-33291334 ( 28) TAGGTGCC 1 chr8:28243892-28243972 ( 49) TAAGTGCC 1 chr19:3775468-3775548 ( 54) TAGGTGCC 1 chr19:3371581-3371661 ( 63) TAGGTGCC 1 chr19:11313707-11313787 ( 47) TAGGTACC 1 chr12:108625417-10862549 ( 62) TAAGTACC 1 chr20:37519339-37519419 ( 16) TAGGTGCT 1 chr5:176131495-176131575 ( 28) TAAGTGCT 1 chr19:11362464-11362544 ( 9) TAGGTGCT 1 chrX:154843730-154843810 ( 70) TGAGTGCC 1 chr22:37640564-37640644 ( 27) TGAGTGCC 1 chr19:12869208-12869288 ( 28) TAGGTGCT 1 chr9:127019801-127019881 ( 34) TAAGTGCT 1 chr12:123436906-12343698 ( 26) TAGGTGCT 1 chr11:72393473-72393553 ( 17) TAAGTGCT 1 chr19:39174767-39174847 ( 57) TAAGTGCT 1 chr19:17795209-17795289 ( 47) TAGGTGCT 1 chr16:88536360-88536440 ( 52) TAGGTGCT 1 chr16:58011573-58011653 ( 24) TAGGTGCT 1 chr19:5189019-5189099 ( 37) TAGGTGCT 1 chr1:113086707-113086787 ( 18) TAGGTGCT 1 chr5:173109485-173109565 ( 33) TAGGTGCT 1 chr11:78074412-78074492 ( 28) TAGGTGCT 1 chr20:50202553-50202633 ( 23) TAGGTGCT 1 chr2:120206156-120206236 ( 51) TAGGTGCT 1 chr6:42688753-42688833 ( 37) TGAGTACC 1 chrX:135282750-135282830 ( 55) TAGGTACT 1 chr15:63495780-63495860 ( 43) TGAGTGCT 1 chr2:130939494-130939574 ( 58) TGGGTGCT 1 chr9:139623072-139623152 ( 62) TGAGTGCT 1 chr19:47815823-47815903 ( 60) TGAGTGCT 1 chr19:47103684-47103764 ( 8) CAGGCGCC 1 chr16:89641699-89641779 ( 37) CAGGCGCC 1 chr12:124978897-12497897 ( 40) CAAGCACC 1 chr19:18809315-18809395 ( 6) CAGGCGCT 1 chr10:76998247-76998327 ( 46) CAGGCGCT 1 chr1:11332768-11332848 ( 7) CAGGCGCT 1 chr8:62674101-62674181 ( 25) CAGGCACT 1 chr10:6506988-6507068 ( 1) CAGGCACT 1 chr19:615636-615716 ( 59) CAAGCACT 1 chr21:45245163-45245243 ( 50) CAGGCACT 1 chr14:91885195-91885275 ( 52) CAGGCACT 1 chr10:70884807-70884887 ( 65) TTAGCGCC 1 chr1:40916329-40916409 ( 28) TTGGCGCC 1 chr16:28081755-28081835 ( 28) TTGGCACC 1 chr19:4570626-4570706 ( 30) TTGGCACC 1 chr19:3336502-3336582 ( 48) TTAGCACC 1 chr20:35035754-35035834 ( 62) TTAGCACC 1 chr16:24864476-24864556 ( 52) TTGGCACC 1 chr16:66639522-66639602 ( 67) TTGGCGCT 1 chr19:593186-593266 ( 32) CAGGTGCC 1 chr10:112247704-11224778 ( 44) CAGGTGCT 1 chr15:68175381-68175461 ( 51) TCGGCACC 1 chr19:1858519-1858599 ( 31) CAGGTGCT 1 chr12:111706916-11170699 ( 32) CAGGTGCT 1 chr11:68610347-68610427 ( 49) CAGGTGCT 1 chr9:117424453-117424533 ( 3) CAAGTGCT 1 chr11:112147917-11214799 ( 25) CAGGTGCT 1 chr1:21571806-21571886 ( 32) CAGGTGCT 1 chr12:124965088-12496516 ( 10) CAGGTGCT 1 chr17:38747126-38747206 ( 18) TCAGCACC 1 chr19:850595-850675 ( 12) CGGGTGCC 1 chr19:4181846-4181926 ( 17) TCAGCGCT 1 chr7:98924156-98924236 ( 21) TCGGCGCT 1 chr19:50999813-50999893 ( 50) CAGGTACT 1 chr7:5595632-5595712 ( 58) CGGGTGCT 1 chr19:18209531-18209611 ( 23) TCAGCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRGCRCY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.83825 E= 5.4e-071 -1378 -58 -1378 173 100 -278 67 -216 96 -1378 102 -1378 -1378 -1378 205 -1378 -1378 151 -1378 27 90 -1378 108 -1378 -1378 204 -1378 -1378 -1378 116 -1378 84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRGCRCY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 141 E= 5.4e-071 0.000000 0.163121 0.000000 0.836879 0.524823 0.035461 0.382979 0.056738 0.510638 0.000000 0.489362 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.695035 0.000000 0.304965 0.489362 0.000000 0.510638 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.546099 0.000000 0.453901 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRGCRCY MEME-2 regular expression -------------------------------------------------------------------------------- T[AG][AG]G[CT][GA]C[CT] -------------------------------------------------------------------------------- Time 8.39 secs. ******************************************************************************** ******************************************************************************** MOTIF AATAAATG MEME-3 width = 8 sites = 44 llr = 405 E-value = 7.8e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATAAATG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8a:a9a:1 pos.-specific C 3:::1::: probability G ::1::::9 matrix T ::9:::a: bits 2.1 * 1.8 * * 1.6 ******* 1.4 ******* Relative 1.2 ******** Entropy 1.0 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATAAATG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:33291254-33291334 37 1.90e-05 GTAGGTGCCT AATAAATG TTGAATGCAT chr12:125170956-12517103 36 1.90e-05 gtcagtgctc aataaatg gcagctTGGA chr19:3470258-3470338 54 1.90e-05 gtcggtgctc aataaatg CACAAAATAG chr10:112247704-11224778 53 1.90e-05 gcaggtgctc aataaatg tgtgttCATG chr12:113772465-11377254 19 1.90e-05 ATAAGAGCTC AATAAATG TTCGCGTCCC chr19:18362687-18362767 24 1.90e-05 ctaggcactt aataaatg cgcatagcat chr16:85353453-85353533 57 1.90e-05 taaggtgctc aataaatg cttgttgagt chr19:39174767-39174847 66 1.90e-05 ctaagtgctc aataaatg tgagtca chr19:3455767-3455847 53 1.90e-05 gtacacactt aataaatg caggataGGC chr16:58011573-58011653 33 1.90e-05 gtaggtgcta aataaatg tttgGCAAGT chr16:24864677-24864757 61 1.90e-05 gctggtgact aataaatg ttccactgag chr1:21571806-21571886 41 1.90e-05 acaggtgctc aataaatg cttgttgCCT chr1:113086707-113086787 27 1.90e-05 gtaggtgctc aataaatg tctgctaaaC chr10:76998247-76998327 55 1.90e-05 gcaggcgcta aataaatg ctcttgaCTA chr10:112619672-11261975 38 1.90e-05 gcagtcactc aataaatg gtggAGTCCA chr17:27088339-27088419 21 1.90e-05 aaaggtgcct aataaatg cttgctgaat chr5:173109485-173109565 42 1.90e-05 gtaggtgctc aataaatg aatgaaAAAG chr3:46890133-46890213 57 1.90e-05 atcggtgttc aataaatg catgtagaaG chr11:78074412-78074492 37 1.90e-05 gtaggtgctc aataaatg ttttatgagt chr16:24864476-24864556 72 1.90e-05 gatggtgcct aataaatg t chr19:30363141-30363221 26 1.90e-05 AGGACTTGTG AATAAATG CGTGGAACTG chr12:123446392-12344647 59 1.90e-05 GTGTGTGCTT AATAAATG TTTGTCCACT chr1:11332768-11332848 16 1.90e-05 gcaggcgctc aataaatg cttgtagcat chr7:5595632-5595712 67 3.68e-05 CCGGGTGCTC CATAAATG CAGCTG chr11:68610347-68610427 58 3.68e-05 GCAGGTGCTC CATAAATG CACCGATGTT chr12:124978897-12497897 49 3.68e-05 GCAAGCACCC CATAAATG CCAAAGGAGC chr22:20244552-20244632 27 3.68e-05 ggaggtgctc cataaatg ttagtcatgt chr19:50999813-50999893 59 3.68e-05 GCAGGTACTC CATAAATG CCTGTCCCCT chr19:11313707-11313787 56 3.68e-05 gtaggtaccc cataaatg cttggatggc chr19:17503841-17503921 49 3.68e-05 GTAGTCACTC CATAAATG GAAATGGCTG chr6:30539976-30540056 7 3.68e-05 GGGGGA CATAAATG GACACAACTA chr10:6624108-6624188 14 7.27e-05 CAGTGCAAAG AAGAAATG GCAAACGGAT chr5:176131495-176131575 37 7.27e-05 gtaagtgctc aatacatg cttgctgcat chr16:2021624-2021704 21 7.27e-05 gaaggtgctc aatacatG AATGCCTTTG chr20:31351835-31351915 46 7.27e-05 gtaagcactc aatacatg tttgccattg chr9:111518378-111518458 23 9.34e-05 gcaggagctc aataaata cttcctgaCT chr20:50202553-50202633 32 9.34e-05 gtaggtgctc aataaata tGCATGCAAT chr1:48492824-48492904 52 1.28e-04 gtaggggctc aataagtg tgtaattTCT chr19:11362464-11362544 18 1.28e-04 gtaggtgctc agtaaatg ttgattgaca chr19:3371581-3371661 72 1.28e-04 gtaggtgcca aataagtg c chr2:120206156-120206236 60 1.28e-04 gtaggtgctc agtaaatg cttgctgact chrX:223308-223388 27 1.62e-04 TGTATGCAGT CAGAAATG TACATTTTGA chr2:131136366-131136446 29 1.62e-04 CCGACTTCCC CAGAAATG TGCCTACTGT chr16:88536360-88536440 61 1.81e-04 gtaggtgctc cataaata ctCCCCAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:33291254-33291334 1.9e-05 36_[+3]_36 chr12:125170956-12517103 1.9e-05 35_[+3]_37 chr19:3470258-3470338 1.9e-05 53_[+3]_19 chr10:112247704-11224778 1.9e-05 52_[+3]_20 chr12:113772465-11377254 1.9e-05 18_[+3]_54 chr19:18362687-18362767 1.9e-05 23_[+3]_49 chr16:85353453-85353533 1.9e-05 56_[+3]_16 chr19:39174767-39174847 1.9e-05 65_[+3]_7 chr19:3455767-3455847 1.9e-05 52_[+3]_20 chr16:58011573-58011653 1.9e-05 32_[+3]_40 chr16:24864677-24864757 1.9e-05 60_[+3]_12 chr1:21571806-21571886 1.9e-05 40_[+3]_32 chr1:113086707-113086787 1.9e-05 26_[+3]_46 chr10:76998247-76998327 1.9e-05 54_[+3]_18 chr10:112619672-11261975 1.9e-05 37_[+3]_35 chr17:27088339-27088419 1.9e-05 20_[+3]_52 chr5:173109485-173109565 1.9e-05 41_[+3]_31 chr3:46890133-46890213 1.9e-05 56_[+3]_16 chr11:78074412-78074492 1.9e-05 36_[+3]_36 chr16:24864476-24864556 1.9e-05 71_[+3]_1 chr19:30363141-30363221 1.9e-05 25_[+3]_47 chr12:123446392-12344647 1.9e-05 58_[+3]_14 chr1:11332768-11332848 1.9e-05 15_[+3]_57 chr7:5595632-5595712 3.7e-05 66_[+3]_6 chr11:68610347-68610427 3.7e-05 57_[+3]_15 chr12:124978897-12497897 3.7e-05 48_[+3]_24 chr22:20244552-20244632 3.7e-05 26_[+3]_46 chr19:50999813-50999893 3.7e-05 58_[+3]_14 chr19:11313707-11313787 3.7e-05 55_[+3]_17 chr19:17503841-17503921 3.7e-05 48_[+3]_24 chr6:30539976-30540056 3.7e-05 6_[+3]_66 chr10:6624108-6624188 7.3e-05 13_[+3]_59 chr5:176131495-176131575 7.3e-05 36_[+3]_36 chr16:2021624-2021704 7.3e-05 20_[+3]_52 chr20:31351835-31351915 7.3e-05 45_[+3]_27 chr9:111518378-111518458 9.3e-05 22_[+3]_50 chr20:50202553-50202633 9.3e-05 31_[+3]_41 chr1:48492824-48492904 0.00013 51_[+3]_21 chr19:11362464-11362544 0.00013 17_[+3]_55 chr19:3371581-3371661 0.00013 71_[+3]_1 chr2:120206156-120206236 0.00013 59_[+3]_13 chrX:223308-223388 0.00016 26_[+3]_46 chr2:131136366-131136446 0.00016 28_[+3]_44 chr16:88536360-88536440 0.00018 60_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATAAATG width=8 seqs=44 chr20:33291254-33291334 ( 37) AATAAATG 1 chr12:125170956-12517103 ( 36) AATAAATG 1 chr19:3470258-3470338 ( 54) AATAAATG 1 chr10:112247704-11224778 ( 53) AATAAATG 1 chr12:113772465-11377254 ( 19) AATAAATG 1 chr19:18362687-18362767 ( 24) AATAAATG 1 chr16:85353453-85353533 ( 57) AATAAATG 1 chr19:39174767-39174847 ( 66) AATAAATG 1 chr19:3455767-3455847 ( 53) AATAAATG 1 chr16:58011573-58011653 ( 33) AATAAATG 1 chr16:24864677-24864757 ( 61) AATAAATG 1 chr1:21571806-21571886 ( 41) AATAAATG 1 chr1:113086707-113086787 ( 27) AATAAATG 1 chr10:76998247-76998327 ( 55) AATAAATG 1 chr10:112619672-11261975 ( 38) AATAAATG 1 chr17:27088339-27088419 ( 21) AATAAATG 1 chr5:173109485-173109565 ( 42) AATAAATG 1 chr3:46890133-46890213 ( 57) AATAAATG 1 chr11:78074412-78074492 ( 37) AATAAATG 1 chr16:24864476-24864556 ( 72) AATAAATG 1 chr19:30363141-30363221 ( 26) AATAAATG 1 chr12:123446392-12344647 ( 59) AATAAATG 1 chr1:11332768-11332848 ( 16) AATAAATG 1 chr7:5595632-5595712 ( 67) CATAAATG 1 chr11:68610347-68610427 ( 58) CATAAATG 1 chr12:124978897-12497897 ( 49) CATAAATG 1 chr22:20244552-20244632 ( 27) CATAAATG 1 chr19:50999813-50999893 ( 59) CATAAATG 1 chr19:11313707-11313787 ( 56) CATAAATG 1 chr19:17503841-17503921 ( 49) CATAAATG 1 chr6:30539976-30540056 ( 7) CATAAATG 1 chr10:6624108-6624188 ( 14) AAGAAATG 1 chr5:176131495-176131575 ( 37) AATACATG 1 chr16:2021624-2021704 ( 21) AATACATG 1 chr20:31351835-31351915 ( 46) AATACATG 1 chr9:111518378-111518458 ( 23) AATAAATA 1 chr20:50202553-50202633 ( 32) AATAAATA 1 chr1:48492824-48492904 ( 52) AATAAGTG 1 chr19:11362464-11362544 ( 18) AGTAAATG 1 chr19:3371581-3371661 ( 72) AATAAGTG 1 chr2:120206156-120206236 ( 60) AGTAAATG 1 chrX:223308-223388 ( 27) CAGAAATG 1 chr2:131136366-131136446 ( 29) CAGAAATG 1 chr16:88536360-88536440 ( 61) CATAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.04855 E= 7.8e-029 152 4 -1210 -1210 186 -1210 -241 -1210 -1210 -1210 -182 188 193 -1210 -1210 -1210 183 -184 -1210 -1210 186 -1210 -241 -1210 -1210 -1210 -1210 198 -194 -1210 195 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 7.8e-029 0.750000 0.250000 0.000000 0.000000 0.954545 0.000000 0.045455 0.000000 0.000000 0.000000 0.068182 0.931818 1.000000 0.000000 0.000000 0.000000 0.931818 0.068182 0.000000 0.000000 0.954545 0.000000 0.045455 0.000000 0.000000 0.000000 0.000000 1.000000 0.068182 0.000000 0.931818 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATG MEME-3 regular expression -------------------------------------------------------------------------------- [AC]ATAAATG -------------------------------------------------------------------------------- Time 11.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GCATTTAT MEME-4 width = 8 sites = 49 llr = 434 E-value = 1.9e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCATTTAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:a:::a1 pos.-specific C 1a:1:::: probability G 8::::::: matrix T :::9aa:9 bits 2.1 * 1.8 * * 1.6 ****** 1.4 ****** Relative 1.2 ******* Entropy 1.0 ******** (12.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCATTTAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTTAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:4968291-4968371 48 1.65e-05 AGCTCATGGA GCATTTAT TAAGCACCCT chr20:39968873-39968953 13 1.65e-05 GAAGGTGCGG Gcatttat ggagcgcctg chr19:702585-702665 35 1.65e-05 cattccgtga gcatttat tgagcaccta chr10:70824671-70824751 51 1.65e-05 AAGAATacat gcatttat tgagcaccta chr1:12636627-12636707 19 1.65e-05 TGTCCAGTAT GCATTTAT TGAGCACCTT chr12:54610663-54610743 30 1.65e-05 catctgaaaa gcatttat tgagcgccta chr11:63868413-63868493 38 1.65e-05 TTTGGTGGGT GCatttat taagcaccaa chr19:3710645-3710725 53 1.65e-05 GAGCGaacgg gcatttat tgtgcactta chr17:55332667-55332747 44 1.65e-05 GTATGAaacc gcatttat taagcaccta chr19:54868249-54868329 13 1.65e-05 TCAGCAGTGT Gcatttat tgagcaccta chr19:3402993-3403073 12 1.65e-05 tccctgacaa gcatttat tttgcacctg chr3:14380533-14380613 41 1.65e-05 tattccccaa gcatttat tgagcaccta chr6:157097874-157097954 36 1.65e-05 tcagtcataa gcatttat tgagtaccta chr19:3229106-3229186 39 1.65e-05 ctgttttcca gcatttat gcagagctgg chr19:47815823-47815903 52 1.65e-05 TTATTaacta gcatttat tgagtgctta chr19:17357677-17357757 19 1.65e-05 CGCCcgacca gcatttat taagcaccct chr19:954436-954516 40 1.65e-05 catttaacat gcatttat taggcaactg chr19:18412321-18412401 26 1.65e-05 ATTATTTCAa gcatttat tgagcacttg chr19:4796977-4797057 30 1.65e-05 gtactagtga gcatttat tgagcaccta chr15:78170685-78170765 66 1.65e-05 GAAAAGATAA Gcatttat tgagcac chr16:66988232-66988312 47 1.65e-05 CATTCTGAAA GCATTTAT TGAACACCGG chr15:63495780-63495860 35 3.45e-05 ataagagcta acatttat tgagtgctta chr20:48926059-48926139 34 3.45e-05 ACAtcagcaa acatttat tgagcaccac chr1:193073417-193073497 45 3.45e-05 TAGTCATGCC acatttat ggagcgccta chr8:128980129-128980209 18 3.45e-05 GCCtccactg acatttat tgagcgcctg chr3:14847841-14847921 7 3.45e-05 TTGTGC acatttat ggagcaccaa chr19:18209531-18209611 41 3.45e-05 tacccaacga acatttat ggagcgcctg chr19:36248059-36248139 6 5.13e-05 CTTGG ccatttat taagcgcctg chr4:77869118-77869198 18 5.13e-05 cgcgcccggc cCATTTAT GTGTAATCTT chr5:156890889-156890969 22 5.13e-05 catttaatca ccatttat cacatgcctg chr16:70325007-70325087 24 5.13e-05 atcaaaccta ccatttat tgagcactta chr6:42688753-42688833 29 8.43e-05 ACACcagcaa gcatttaa tgagtacctg chr15:68175381-68175461 43 8.43e-05 aatatgcaaa gCACTTAT TCGGCACCTA chr22:37640564-37640644 19 8.43e-05 TCTAAGCAGa gcatttaa tgagtgcctg chr19:3398265-3398345 50 8.43e-05 CTCCACTGGC GCacttat tgagcgccag chr8:91226967-91227047 24 8.43e-05 tcagtcaaca gcatttaa tgagcgtcca chr6:30539976-30540056 58 8.43e-05 AATtttaaaa gcacttat tggatgccta chr19:513819-513899 47 1.16e-04 TCCTGGCCCA GCATTTAG TGAGCACCCA chr2:130939494-130939574 20 1.16e-04 cttgaaagag gcatttac cgagcgccca chr19:1808500-1808580 64 1.16e-04 ccTCAGGCCa gcatttac tgagcacct chr19:7679904-7679984 41 1.16e-04 ccaactaagt gcatttag aacaatgatg chr19:844059-844139 48 1.48e-04 cctgcagcca gcattcat tgagcaccca chr12:111851506-11185158 38 1.48e-04 cattcaagag gcattcat tgagctcctg chr19:17396723-17396803 39 1.48e-04 ACCTGCACAT GCATGTAT TTTGCTCCAT chr1:26038055-26038135 36 1.48e-04 cactcattct gcatgtat tgagcaccac chr19:7989339-7989419 58 1.64e-04 ctcaataata gcttttat tatCATGTTC chr20:35035754-35035834 54 1.64e-04 cattcaccag gcttttat ttagcacctg chr1:31331925-31332005 43 1.96e-04 catacagcag gcatttgt tgagcaccag chr12:109358721-10935880 30 1.96e-04 acccattcat tcatttat tcaataaaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTTAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:4968291-4968371 1.7e-05 47_[+4]_25 chr20:39968873-39968953 1.7e-05 12_[+4]_60 chr19:702585-702665 1.7e-05 34_[+4]_38 chr10:70824671-70824751 1.7e-05 50_[+4]_22 chr1:12636627-12636707 1.7e-05 18_[+4]_54 chr12:54610663-54610743 1.7e-05 29_[+4]_43 chr11:63868413-63868493 1.7e-05 37_[+4]_35 chr19:3710645-3710725 1.7e-05 52_[+4]_20 chr17:55332667-55332747 1.7e-05 43_[+4]_29 chr19:54868249-54868329 1.7e-05 12_[+4]_60 chr19:3402993-3403073 1.7e-05 11_[+4]_61 chr3:14380533-14380613 1.7e-05 40_[+4]_32 chr6:157097874-157097954 1.7e-05 35_[+4]_37 chr19:3229106-3229186 1.7e-05 38_[+4]_34 chr19:47815823-47815903 1.7e-05 51_[+4]_21 chr19:17357677-17357757 1.7e-05 18_[+4]_54 chr19:954436-954516 1.7e-05 39_[+4]_33 chr19:18412321-18412401 1.7e-05 25_[+4]_47 chr19:4796977-4797057 1.7e-05 29_[+4]_43 chr15:78170685-78170765 1.7e-05 65_[+4]_7 chr16:66988232-66988312 1.7e-05 46_[+4]_26 chr15:63495780-63495860 3.5e-05 34_[+4]_38 chr20:48926059-48926139 3.5e-05 33_[+4]_39 chr1:193073417-193073497 3.5e-05 44_[+4]_28 chr8:128980129-128980209 3.5e-05 17_[+4]_55 chr3:14847841-14847921 3.5e-05 6_[+4]_66 chr19:18209531-18209611 3.5e-05 40_[+4]_32 chr19:36248059-36248139 5.1e-05 5_[+4]_67 chr4:77869118-77869198 5.1e-05 17_[+4]_55 chr5:156890889-156890969 5.1e-05 21_[+4]_51 chr16:70325007-70325087 5.1e-05 23_[+4]_49 chr6:42688753-42688833 8.4e-05 28_[+4]_44 chr15:68175381-68175461 8.4e-05 42_[+4]_30 chr22:37640564-37640644 8.4e-05 18_[+4]_54 chr19:3398265-3398345 8.4e-05 49_[+4]_23 chr8:91226967-91227047 8.4e-05 23_[+4]_49 chr6:30539976-30540056 8.4e-05 57_[+4]_15 chr19:513819-513899 0.00012 46_[+4]_26 chr2:130939494-130939574 0.00012 19_[+4]_53 chr19:1808500-1808580 0.00012 63_[+4]_9 chr19:7679904-7679984 0.00012 40_[+4]_32 chr19:844059-844139 0.00015 47_[+4]_25 chr12:111851506-11185158 0.00015 37_[+4]_35 chr19:17396723-17396803 0.00015 38_[+4]_34 chr1:26038055-26038135 0.00015 35_[+4]_37 chr19:7989339-7989419 0.00016 57_[+4]_15 chr20:35035754-35035834 0.00016 53_[+4]_19 chr1:31331925-31332005 0.0002 42_[+4]_30 chr12:109358721-10935880 0.0002 29_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTTAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCATTTAT width=8 seqs=49 chr7:4968291-4968371 ( 48) GCATTTAT 1 chr20:39968873-39968953 ( 13) GCATTTAT 1 chr19:702585-702665 ( 35) GCATTTAT 1 chr10:70824671-70824751 ( 51) GCATTTAT 1 chr1:12636627-12636707 ( 19) GCATTTAT 1 chr12:54610663-54610743 ( 30) GCATTTAT 1 chr11:63868413-63868493 ( 38) GCATTTAT 1 chr19:3710645-3710725 ( 53) GCATTTAT 1 chr17:55332667-55332747 ( 44) GCATTTAT 1 chr19:54868249-54868329 ( 13) GCATTTAT 1 chr19:3402993-3403073 ( 12) GCATTTAT 1 chr3:14380533-14380613 ( 41) GCATTTAT 1 chr6:157097874-157097954 ( 36) GCATTTAT 1 chr19:3229106-3229186 ( 39) GCATTTAT 1 chr19:47815823-47815903 ( 52) GCATTTAT 1 chr19:17357677-17357757 ( 19) GCATTTAT 1 chr19:954436-954516 ( 40) GCATTTAT 1 chr19:18412321-18412401 ( 26) GCATTTAT 1 chr19:4796977-4797057 ( 30) GCATTTAT 1 chr15:78170685-78170765 ( 66) GCATTTAT 1 chr16:66988232-66988312 ( 47) GCATTTAT 1 chr15:63495780-63495860 ( 35) ACATTTAT 1 chr20:48926059-48926139 ( 34) ACATTTAT 1 chr1:193073417-193073497 ( 45) ACATTTAT 1 chr8:128980129-128980209 ( 18) ACATTTAT 1 chr3:14847841-14847921 ( 7) ACATTTAT 1 chr19:18209531-18209611 ( 41) ACATTTAT 1 chr19:36248059-36248139 ( 6) CCATTTAT 1 chr4:77869118-77869198 ( 18) CCATTTAT 1 chr5:156890889-156890969 ( 22) CCATTTAT 1 chr16:70325007-70325087 ( 24) CCATTTAT 1 chr6:42688753-42688833 ( 29) GCATTTAA 1 chr15:68175381-68175461 ( 43) GCACTTAT 1 chr22:37640564-37640644 ( 19) GCATTTAA 1 chr19:3398265-3398345 ( 50) GCACTTAT 1 chr8:91226967-91227047 ( 24) GCATTTAA 1 chr6:30539976-30540056 ( 58) GCACTTAT 1 chr19:513819-513899 ( 47) GCATTTAG 1 chr2:130939494-130939574 ( 20) GCATTTAC 1 chr19:1808500-1808580 ( 64) GCATTTAC 1 chr19:7679904-7679984 ( 41) GCATTTAG 1 chr19:844059-844139 ( 48) GCATTCAT 1 chr12:111851506-11185158 ( 38) GCATTCAT 1 chr19:17396723-17396803 ( 39) GCATGTAT 1 chr1:26038055-26038135 ( 36) GCATGTAT 1 chr19:7989339-7989419 ( 58) GCTTTTAT 1 chr20:35035754-35035834 ( 54) GCTTTTAT 1 chr1:31331925-31332005 ( 43) GCATTTGT 1 chr12:109358721-10935880 ( 30) TCATTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTTAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.65557 E= 1.9e-027 -110 -158 169 -363 -1226 204 -1226 -1226 187 -1226 -1226 -263 -1226 -199 -1226 189 -1226 -1226 -256 192 -1226 -258 -1226 192 190 -1226 -356 -1226 -210 -258 -256 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTTAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.9e-027 0.122449 0.081633 0.775510 0.020408 0.000000 1.000000 0.000000 0.000000 0.959184 0.000000 0.000000 0.040816 0.000000 0.061224 0.000000 0.938776 0.000000 0.000000 0.040816 0.959184 0.000000 0.040816 0.000000 0.959184 0.979592 0.000000 0.020408 0.000000 0.061224 0.040816 0.040816 0.857143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTTAT MEME-4 regular expression -------------------------------------------------------------------------------- GCATTTAT -------------------------------------------------------------------------------- Time 14.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TRCTGWRT MEME-5 width = 8 sites = 24 llr = 209 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRCTGWRT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5:::35: pos.-specific C ::a::::: probability G :5::a:3: matrix T a::a:72a bits 2.1 * *** * 1.8 * *** * 1.6 * *** * 1.4 * *** * Relative 1.2 * *** * Entropy 1.0 ****** * (12.5 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TACTGTAT consensus G AG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRCTGWRT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:70884807-70884887 73 3.18e-05 ATTTAGCGCC TACTGTAT chr5:1333512-1333592 6 3.18e-05 GGGAC TACTGTAT ACACACACGG chr4:77869118-77869198 58 3.18e-05 attgagcgcc tactgtat gtttggcaTA chr19:3710645-3710725 69 3.18e-05 attgtgcact tactgtat gcgc chr2:101223508-101223588 35 3.18e-05 ATTATGCGTT TACTGTAT TCATCTTCGT chr12:111851506-11185158 54 3.18e-05 attgagctcc tgctgtat gctaggagct chr8:145607600-145607680 27 3.18e-05 ATTGGGCTCC TGCTGTAT TTGGCAAGTA chr20:48334286-48334366 17 3.18e-05 tttcactctc tgctgtat ccttgcacct chr1:15365521-15365601 14 3.18e-05 ATTGTGCATC TACTGTAT ACAGACACGA chr19:50042596-50042676 53 6.10e-05 attgagcacc tgctgtgt gtcacgccca chr12:109358721-10935880 61 6.10e-05 gttgaacaca tgctgtgt agccagcatt chr19:593186-593266 47 9.38e-05 GCCACATATT TGCTGAAT TTTCTGAGGG chr17:27088339-27088419 31 9.38e-05 aataaatgct tgctgaat gagtACACAG chr20:39968873-39968953 29 1.24e-04 atggagcgcc tgctgttt gtcaggcgag chr6:152561713-152561793 64 1.24e-04 attatgtgct tactgttt gctaggcac chr1:15365108-15365188 49 1.24e-04 ATTGTGCAAC TACTGTTT AAGGCATGAA chr19:3229106-3229186 27 1.24e-04 attgaacgcc tactgttt tccagcattt chr6:13396380-13396460 49 1.24e-04 gttgagcacc tactgttt gccagcgaca chr1:2475970-2476050 58 1.55e-04 ATGCAGTAGG TGCTGAGT AAGTGAGCAC chr10:70824671-70824751 67 1.55e-04 attgagcacc tactgagt accaTT chr16:24864677-24864757 13 1.55e-04 acatttgttt tactgagt cacaagacct chr7:116499608-116499688 37 1.55e-04 CAATAATATT TGCTGAGT ATCCACTGTA chr4:103605896-103605976 12 1.55e-04 aggagaaggc tgctgagt gactaacagg chrX:135282750-135282830 22 1.55e-04 aacaggcata tactgagt gattcctgta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRCTGWRT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:70884807-70884887 3.2e-05 72_[+5] chr5:1333512-1333592 3.2e-05 5_[+5]_67 chr4:77869118-77869198 3.2e-05 57_[+5]_15 chr19:3710645-3710725 3.2e-05 68_[+5]_4 chr2:101223508-101223588 3.2e-05 34_[+5]_38 chr12:111851506-11185158 3.2e-05 53_[+5]_19 chr8:145607600-145607680 3.2e-05 26_[+5]_46 chr20:48334286-48334366 3.2e-05 16_[+5]_56 chr1:15365521-15365601 3.2e-05 13_[+5]_59 chr19:50042596-50042676 6.1e-05 52_[+5]_20 chr12:109358721-10935880 6.1e-05 60_[+5]_12 chr19:593186-593266 9.4e-05 46_[+5]_26 chr17:27088339-27088419 9.4e-05 30_[+5]_42 chr20:39968873-39968953 0.00012 28_[+5]_44 chr6:152561713-152561793 0.00012 63_[+5]_9 chr1:15365108-15365188 0.00012 48_[+5]_24 chr19:3229106-3229186 0.00012 26_[+5]_46 chr6:13396380-13396460 0.00012 48_[+5]_24 chr1:2475970-2476050 0.00015 57_[+5]_15 chr10:70824671-70824751 0.00015 66_[+5]_6 chr16:24864677-24864757 0.00015 12_[+5]_60 chr7:116499608-116499688 0.00015 36_[+5]_36 chr4:103605896-103605976 0.00015 11_[+5]_61 chrX:135282750-135282830 0.00015 21_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRCTGWRT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRCTGWRT width=8 seqs=24 chr10:70884807-70884887 ( 73) TACTGTAT 1 chr5:1333512-1333592 ( 6) TACTGTAT 1 chr4:77869118-77869198 ( 58) TACTGTAT 1 chr19:3710645-3710725 ( 69) TACTGTAT 1 chr2:101223508-101223588 ( 35) TACTGTAT 1 chr12:111851506-11185158 ( 54) TGCTGTAT 1 chr8:145607600-145607680 ( 27) TGCTGTAT 1 chr20:48334286-48334366 ( 17) TGCTGTAT 1 chr1:15365521-15365601 ( 14) TACTGTAT 1 chr19:50042596-50042676 ( 53) TGCTGTGT 1 chr12:109358721-10935880 ( 61) TGCTGTGT 1 chr19:593186-593266 ( 47) TGCTGAAT 1 chr17:27088339-27088419 ( 31) TGCTGAAT 1 chr20:39968873-39968953 ( 29) TGCTGTTT 1 chr6:152561713-152561793 ( 64) TACTGTTT 1 chr1:15365108-15365188 ( 49) TACTGTTT 1 chr19:3229106-3229186 ( 27) TACTGTTT 1 chr6:13396380-13396460 ( 49) TACTGTTT 1 chr1:2475970-2476050 ( 58) TGCTGAGT 1 chr10:70824671-70824751 ( 67) TACTGAGT 1 chr16:24864677-24864757 ( 13) TACTGAGT 1 chr7:116499608-116499688 ( 37) TGCTGAGT 1 chr4:103605896-103605976 ( 12) TGCTGAGT 1 chrX:135282750-135282830 ( 22) TACTGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRCTGWRT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.5e+003 -1123 -1123 -1123 198 105 -1123 93 -1123 -1123 204 -1123 -1123 -1123 -1123 -1123 198 -1123 -1123 205 -1123 35 -1123 -1123 140 80 -1123 47 -28 -1123 -1123 -1123 198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRCTGWRT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.5e+003 0.000000 0.000000 0.000000 1.000000 0.541667 0.000000 0.458333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.458333 0.000000 0.333333 0.208333 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRCTGWRT MEME-5 regular expression -------------------------------------------------------------------------------- T[AG]CTG[TA][AGT]T -------------------------------------------------------------------------------- Time 17.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:850595-850675 7.76e-01 80 chr16:66988232-66988312 9.03e-04 46_[+4(1.65e-05)]_26 chr6:30539976-30540056 2.22e-04 6_[+3(3.68e-05)]_43_[+4(8.43e-05)]_\ 15 chr1:15365521-15365601 2.06e-04 16_[+1(1.71e-05)]_47_[+1(1.71e-05)]_\ 1 chr1:26038055-26038135 2.64e-04 80 chr17:55558354-55558434 4.42e-02 40_[+1(8.17e-05)]_32 chr19:1849206-1849286 5.86e-01 80 chr9:138775695-138775775 2.25e-02 28_[+5(3.18e-05)]_44 chr19:17396723-17396803 5.22e-03 80 chr11:69527111-69527191 9.16e-01 80 chr18:43191957-43192037 2.10e-03 18_[+1(9.74e-05)]_54 chr15:78170685-78170765 5.81e-03 65_[+4(1.65e-05)]_7 chrX:135282750-135282830 3.07e-04 35_[+1(1.71e-05)]_37 chr16:70325007-70325087 1.61e-03 23_[+4(5.13e-05)]_49 chr1:11332768-11332848 1.03e-03 15_[+3(1.90e-05)]_57 chr4:88033495-88033575 1.25e-01 80 chr19:17503841-17503921 2.51e-03 30_[+1(8.17e-05)]_10_[+3(3.68e-05)]_\ 24 chr20:48334286-48334366 6.48e-04 16_[+5(3.18e-05)]_56 chr19:47530246-47530326 3.60e-05 11_[+2(5.87e-05)]_[+5(3.18e-05)]_53 chr10:73559718-73559798 1.94e-05 47_[+1(1.71e-05)]_25 chr7:2720633-2720713 1.18e-01 80 chr19:33932457-33932537 2.94e-06 53_[+4(1.65e-05)]_7_[+5(3.18e-05)]_\ 4 chr19:850296-850376 1.15e-02 80 chr18:74535265-74535345 1.86e-03 48_[+1(4.96e-05)]_1_[+2(2.81e-05)]_\ 15 chr14:91885195-91885275 8.51e-03 80 chr1:224752942-224753022 5.70e-02 80 chr20:48912060-48912140 4.85e-02 80 chr12:123446392-12344647 1.02e-03 58_[+3(1.90e-05)]_14 chr22:29075301-29075381 2.14e-03 35_[+1(4.96e-05)]_37 chr21:45245163-45245243 5.45e-02 80 chr19:4796977-4797057 5.39e-06 29_[+4(1.65e-05)]_8_[+5(3.18e-05)]_\ 27 chr19:18412321-18412401 1.55e-06 25_[+4(1.65e-05)]_8_[+5(3.18e-05)]_\ 31 chr7:98923956-98924036 2.12e-03 55_[+1(4.96e-05)]_1_[+2(2.81e-05)]_\ 8 chr19:954436-954516 2.66e-04 39_[+4(1.65e-05)]_8_[+5(6.10e-05)]_\ 17 chr19:30363141-30363221 1.74e-05 25_[+3(1.90e-05)]_15_[+1(4.96e-05)]_\ 1_[+2(2.81e-05)]_15 chr2:120206156-120206236 1.45e-03 80 chr5:156890889-156890969 5.15e-05 21_[+4(5.13e-05)]_8_[+5(3.18e-05)]_\ 35 chr12:108625417-10862549 1.12e-05 69_[+5(3.18e-05)]_3 chr16:2076590-2076670 8.46e-03 32_[+3(1.90e-05)]_40 chr2:32514363-32514443 8.25e-02 80 chr19:752957-753037 1.45e-05 24_[+2(2.81e-05)]_[+5(3.18e-05)]_40 chr7:101387203-101387283 5.31e-03 62_[+5(3.18e-05)]_10 chr16:66639522-66639602 3.56e-01 80 chr5:10295378-10295458 9.87e-01 80 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chr19:17355515-17355595 1.83e-02 61_[+1(1.71e-05)]_11 chr7:98924156-98924236 1.08e-01 80 chr16:58011573-58011653 7.25e-04 32_[+3(1.90e-05)]_40 chr16:88536360-88536440 1.03e-03 80 chr15:63221301-63221381 1.66e-02 80 chr12:124978897-12497897 1.23e-03 30_[+1(8.17e-05)]_10_[+3(3.68e-05)]_\ 24 chrX:47438998-47439078 4.11e-02 80 chr19:8677069-8677149 1.97e-03 80 chr8:128980129-128980209 1.78e-03 17_[+4(3.45e-05)]_55 chr6:35887623-35887703 6.06e-03 43_[+1(1.71e-05)]_29 chr19:10631527-10631607 4.17e-03 19_[+1(8.17e-05)]_53 chr8:28243892-28243972 2.93e-02 80 chr19:3455767-3455847 2.35e-04 52_[+3(1.90e-05)]_20 chr1:15365108-15365188 1.07e-01 80 chr1:15365316-15365396 2.62e-05 56_[+1(1.71e-05)]_16 chr19:54868249-54868329 3.78e-07 12_[+4(1.65e-05)]_8_[+5(3.18e-05)]_\ 44 chr9:139623072-139623152 2.83e-02 80 chr11:68610347-68610427 4.98e-04 39_[+1(4.96e-05)]_10_[+3(3.68e-05)]_\ 15 chr8:62504257-62504337 6.65e-03 41_[+2(5.87e-05)]_31 chr20:48531374-48531454 7.82e-04 56_[+5(3.18e-05)]_16 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34_[+2(5.87e-05)]_3_[+1(8.17e-05)]_3 chr9:111518378-111518458 1.12e-02 22_[+3(9.34e-05)]_50 chr2:131136594-131136674 1.86e-01 80 chr12:54610663-54610743 5.85e-04 29_[+4(1.65e-05)]_43 chr11:1594772-1594852 9.04e-03 80 chr19:3336502-3336582 1.20e-02 80 chr19:482548-482628 1.67e-05 13_[+4(8.43e-05)]_11_[+1(4.96e-05)]_\ 40 chr19:18241818-18241898 9.35e-04 72_[+1(1.71e-05)] chr1:87258160-87258240 4.77e-02 35_[+1(1.71e-05)]_37 chr11:75063665-75063745 1.62e-02 80 chr1:12636627-12636707 2.73e-05 18_[+4(1.65e-05)]_54 chr19:764500-764580 9.47e-01 80 chr19:7989339-7989419 1.49e-03 80 chr19:4570626-4570706 6.24e-04 40_[+1(4.96e-05)]_32 chr6:15043274-15043354 7.93e-03 62_[+1(1.71e-05)]_10 chr19:1848982-1849062 7.85e-06 66_[+5(3.18e-05)]_6 chr19:18809315-18809395 6.87e-02 80 chr19:45206195-45206275 5.00e-01 80 chr12:109358721-10935880 1.45e-03 60_[+5(6.10e-05)]_12 chr10:6506988-6507068 6.80e-03 80 chr19:514022-514102 2.92e-03 80 chr19:11362464-11362544 7.38e-03 80 chr17:74098797-74098877 1.42e-04 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chr9:33620120-33620200 8.66e-02 80 chr16:58426979-58427059 1.09e-01 80 chr16:28081755-28081835 2.99e-03 38_[+1(4.96e-05)]_34 chr1:160492797-160492877 1.98e-02 53_[+1(1.71e-05)]_19 chr9:127321279-127321359 1.14e-01 80 chr20:37519339-37519419 4.71e-03 80 chr10:70884807-70884887 7.31e-03 72_[+5(3.18e-05)] chr11:77789867-77789947 1.86e-01 80 chr1:31331925-31332005 1.09e-03 80 chr7:5595632-5595712 8.38e-03 66_[+3(3.68e-05)]_6 chr19:10490849-10490929 9.30e-01 80 chr12:94561042-94561122 2.49e-03 4_[+5(3.18e-05)]_68 chr20:39968873-39968953 1.60e-04 12_[+4(1.65e-05)]_60 chr19:18140774-18140854 1.06e-01 80 chr7:4968291-4968371 7.21e-05 1_[+2(5.87e-05)]_38_[+4(1.65e-05)]_\ [+2(5.87e-05)]_17 chr10:6624108-6624188 7.43e-02 13_[+3(7.27e-05)]_59 chr6:42688753-42688833 2.01e-04 28_[+4(8.43e-05)]_44 chr12:125170956-12517103 3.07e-04 35_[+3(1.90e-05)]_37 chr15:78026235-78026315 8.43e-03 80 chr1:2475970-2476050 3.26e-05 44_[+1(8.17e-05)]_28 chr1:48492824-48492904 6.05e-03 33_[+1(8.17e-05)]_39 chr20:33291254-33291334 4.56e-04 36_[+3(1.90e-05)]_36 chr7:5595848-5595928 8.83e-01 80 chr19:17403771-17403851 2.95e-01 80 chr20:32320324-32320404 2.02e-01 80 chr8:62504456-62504536 2.67e-01 80 chr14:91885401-91885481 9.42e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************