******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZHX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:89481324-89481404 1.0000 80 chr1:15573661-15573741 1.0000 80 chr15:40803445-40803525 1.0000 80 chr7:134270845-134270925 1.0000 80 chr17:2689638-2689718 1.0000 80 chr19:17709943-17710023 1.0000 80 chr11:64257511-64257591 1.0000 80 chr14:102781257-10278133 1.0000 80 chr6:40691871-40691951 1.0000 80 chr1:93816591-93816671 1.0000 80 chr12:49595844-49595924 1.0000 80 chr6:6915608-6915688 1.0000 80 chr7:125850-125930 1.0000 80 chr6:43478447-43478527 1.0000 80 chr19:40993939-40994019 1.0000 80 chr7:30811016-30811096 1.0000 80 chr17:38309799-38309879 1.0000 80 chr12:92733200-92733280 1.0000 80 chr10:31499283-31499363 1.0000 80 chr6:157274901-157274981 1.0000 80 chr22:22052728-22052808 1.0000 80 chr1:227100413-227100493 1.0000 80 chr22:50765361-50765441 1.0000 80 chr21:20132129-20132209 1.0000 80 chr18:23501742-23501822 1.0000 80 chr17:46671375-46671455 1.0000 80 chr1:30702940-30703020 1.0000 80 chr2:54483376-54483456 1.0000 80 chr6:144020054-144020134 1.0000 80 chr22:19974024-19974104 1.0000 80 chr5:140937497-140937577 1.0000 80 chr1:232941105-232941185 1.0000 80 chrX:47342075-47342155 1.0000 80 chr10:6970661-6970741 1.0000 80 chr10:135186871-13518695 1.0000 80 chr7:123175051-123175131 1.0000 80 chr19:17462847-17462927 1.0000 80 chr1:113683305-113683385 1.0000 80 chr12:49351289-49351369 1.0000 80 chr11:45864848-45864928 1.0000 80 chr5:139493585-139493665 1.0000 80 chr1:231473943-231474023 1.0000 80 chr12:113658849-11365892 1.0000 80 chr6:97731106-97731186 1.0000 80 chr17:4843526-4843606 1.0000 80 chr20:3762037-3762117 1.0000 80 chr15:38547900-38547980 1.0000 80 chr1:61707204-61707284 1.0000 80 chr4:8178706-8178786 1.0000 80 chr17:53046027-53046107 1.0000 80 chr18:712328-712408 1.0000 80 chr9:94860364-94860444 1.0000 80 chr1:155804298-155804378 1.0000 80 chr17:4167251-4167331 1.0000 80 chr16:79791225-79791305 1.0000 80 chr9:88555908-88555988 1.0000 80 chrX:1021132-1021212 1.0000 80 chr22:22001130-22001210 1.0000 80 chr6:36308899-36308979 1.0000 80 chr3:49131498-49131578 1.0000 80 chr15:43785456-43785536 1.0000 80 chr17:46662835-46662915 1.0000 80 chr11:13484795-13484875 1.0000 80 chr11:58346288-58346368 1.0000 80 chr5:180651067-180651147 1.0000 80 chr19:48201492-48201572 1.0000 80 chr15:34880684-34880764 1.0000 80 chr19:4124761-4124841 1.0000 80 chr7:106619666-106619746 1.0000 80 chr19:40023442-40023522 1.0000 80 chr17:7760883-7760963 1.0000 80 chr17:74732599-74732679 1.0000 80 chr11:10879304-10879384 1.0000 80 chr17:54857696-54857776 1.0000 80 chr6:10954891-10954971 1.0000 80 chr1:211828708-211828788 1.0000 80 chr12:57940994-57941074 1.0000 80 chr2:75005807-75005887 1.0000 80 chr22:50051164-50051244 1.0000 80 chr5:169010695-169010775 1.0000 80 chr15:78730430-78730510 1.0000 80 chr6:147981707-147981787 1.0000 80 chr14:23938407-23938487 1.0000 80 chr16:87985052-87985132 1.0000 80 chr14:31494810-31494890 1.0000 80 chr19:4124145-4124225 1.0000 80 chr3:13493277-13493357 1.0000 80 chr15:44580784-44580864 1.0000 80 chr19:3462459-3462539 1.0000 80 chr10:63510838-63510918 1.0000 80 chr12:29534153-29534233 1.0000 80 chr5:133304275-133304355 1.0000 80 chr15:75287756-75287836 1.0000 80 chr19:50316870-50316950 1.0000 80 chr7:151065312-151065392 1.0000 80 chr15:79165937-79166017 1.0000 80 chr7:94139395-94139475 1.0000 80 chr9:6015588-6015668 1.0000 80 chr7:75807574-75807654 1.0000 80 chr19:50321371-50321451 1.0000 80 chr6:135505157-135505237 1.0000 80 chr22:21996650-21996730 1.0000 80 chr4:26321178-26321258 1.0000 80 chr6:15691693-15691773 1.0000 80 chr5:176449617-176449697 1.0000 80 chr22:46500186-46500266 1.0000 80 chr21:36577714-36577794 1.0000 80 chr2:133029209-133029289 1.0000 80 chrX:118740402-118740482 1.0000 80 chr18:712528-712608 1.0000 80 chr12:53553335-53553415 1.0000 80 chrX:24168488-24168568 1.0000 80 chr22:23096169-23096249 1.0000 80 chr19:41870163-41870243 1.0000 80 chr10:51565129-51565209 1.0000 80 chr17:55162348-55162428 1.0000 80 chr1:211871965-211872045 1.0000 80 chr19:46320508-46320588 1.0000 80 chr7:104771580-104771660 1.0000 80 chr1:245508951-245509031 1.0000 80 chr22:22301746-22301826 1.0000 80 chr15:85197523-85197603 1.0000 80 chr13:42846063-42846143 1.0000 80 chr19:14117062-14117142 1.0000 80 chr8:22530611-22530691 1.0000 80 chr9:138313248-138313328 1.0000 80 chr1:6296048-6296128 1.0000 80 chr7:134671215-134671295 1.0000 80 chr2:136743163-136743243 1.0000 80 chr1:175288910-175288990 1.0000 80 chr20:30539737-30539817 1.0000 80 chr6:31740753-31740833 1.0000 80 chr18:21096041-21096121 1.0000 80 chr10:7830009-7830089 1.0000 80 chr15:93461243-93461323 1.0000 80 chr22:23455171-23455251 1.0000 80 chr6:44355224-44355304 1.0000 80 chr20:61506983-61507063 1.0000 80 chr16:79804329-79804409 1.0000 80 chr2:97175250-97175330 1.0000 80 chr9:6413102-6413182 1.0000 80 chr4:57396956-57397036 1.0000 80 chrX:54070826-54070906 1.0000 80 chr16:90088984-90089064 1.0000 80 chr22:22006512-22006592 1.0000 80 chr22:21997442-21997522 1.0000 80 chr6:52284952-52285032 1.0000 80 chr1:43824459-43824539 1.0000 80 chr16:19729611-19729691 1.0000 80 chr7:2272588-2272668 1.0000 80 chr1:38478678-38478758 1.0000 80 chr2:48667673-48667753 1.0000 80 chr6:7042037-7042117 1.0000 80 chr1:78148339-78148419 1.0000 80 chr15:59430541-59430621 1.0000 80 chr10:81160398-81160478 1.0000 80 chr3:185655198-185655278 1.0000 80 chr9:35103336-35103416 1.0000 80 chr6:30687765-30687845 1.0000 80 chr15:22833376-22833456 1.0000 80 chr13:21750696-21750776 1.0000 80 chr17:41132553-41132633 1.0000 80 chr21:21420642-21420722 1.0000 80 chr1:109655460-109655540 1.0000 80 chr9:98637853-98637933 1.0000 80 chr1:36396054-36396134 1.0000 80 chr17:27717254-27717334 1.0000 80 chr3:194304640-194304720 1.0000 80 chr17:38375427-38375507 1.0000 80 chr15:66648988-66649068 1.0000 80 chr5:138861966-138862046 1.0000 80 chr15:99791480-99791560 1.0000 80 chrX:13752712-13752792 1.0000 80 chr3:45112820-45112900 1.0000 80 chr1:17036410-17036490 1.0000 80 chr9:6681684-6681764 1.0000 80 chr2:25194947-25195027 1.0000 80 chr17:17142488-17142568 1.0000 80 chr19:50380423-50380503 1.0000 80 chr9:131495667-131495747 1.0000 80 chr13:50018064-50018144 1.0000 80 chr18:3297518-3297598 1.0000 80 chr12:110337970-11033805 1.0000 80 chr2:120517264-120517344 1.0000 80 chr3:160117303-160117383 1.0000 80 chr16:67867795-67867875 1.0000 80 chr6:151711695-151711775 1.0000 80 chr1:61649902-61649982 1.0000 80 chr5:137805934-137806014 1.0000 80 chr11:10830147-10830227 1.0000 80 chr2:73089818-73089898 1.0000 80 chr1:208305671-208305751 1.0000 80 chr1:36626788-36626868 1.0000 80 chr19:32836462-32836542 1.0000 80 chr11:76838333-76838413 1.0000 80 chr1:172419170-172419250 1.0000 80 chr8:97534614-97534694 1.0000 80 chr1:16543027-16543107 1.0000 80 chr4:17812527-17812607 1.0000 80 chr6:43635117-43635197 1.0000 80 chr22:23470763-23470843 1.0000 80 chr6:13625204-13625284 1.0000 80 chr9:132648067-132648147 1.0000 80 chr22:23009160-23009240 1.0000 80 chr16:2398854-2398934 1.0000 80 chr18:75705684-75705764 1.0000 80 chr6:71122897-71122977 1.0000 80 chr22:21352962-21353042 1.0000 80 chr6:161590828-161590908 1.0000 80 chr3:155524056-155524136 1.0000 80 chr1:110881560-110881640 1.0000 80 chr15:69452892-69452972 1.0000 80 chr6:35995403-35995483 1.0000 80 chr1:209866357-209866437 1.0000 80 chr12:96883246-96883326 1.0000 80 chr15:40075007-40075087 1.0000 80 chr12:129308512-12930859 1.0000 80 chr17:37607558-37607638 1.0000 80 chr1:231227844-231227924 1.0000 80 chr8:6673955-6674035 1.0000 80 chr22:19949936-19950016 1.0000 80 chr16:30456254-30456334 1.0000 80 chr1:21503216-21503296 1.0000 80 chr5:74632546-74632626 1.0000 80 chr22:23256034-23256114 1.0000 80 chr6:146285547-146285627 1.0000 80 chr18:47018861-47018941 1.0000 80 chr12:125473645-12547372 1.0000 80 chr17:3627103-3627183 1.0000 80 chr16:67596682-67596762 1.0000 80 chr7:123264772-123264852 1.0000 80 chr22:22292521-22292601 1.0000 80 chr6:36727075-36727155 1.0000 80 chr17:78121090-78121170 1.0000 80 chr19:1095470-1095550 1.0000 80 chr11:66112630-66112710 1.0000 80 chr19:6516984-6517064 1.0000 80 chr3:14220314-14220394 1.0000 80 chr16:85004254-85004334 1.0000 80 chr1:19923395-19923475 1.0000 80 chr14:100705084-10070516 1.0000 80 chr22:23499098-23499178 1.0000 80 chr9:38069655-38069735 1.0000 80 chr11:126310875-12631095 1.0000 80 chr12:110517767-11051784 1.0000 80 chr3:128564878-128564958 1.0000 80 chr12:8234673-8234753 1.0000 80 chr11:72504853-72504933 1.0000 80 chr11:58554315-58554395 1.0000 80 chr16:84150417-84150497 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZHX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZHX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.196 C 0.3 G 0.302 T 0.201 Background letter frequencies (from file dataset with add-one prior applied): A 0.196 C 0.3 G 0.302 T 0.201 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTCGCGA MEME-1 width = 8 sites = 73 llr = 699 E-value = 2.7e-084 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::9 pos.-specific C :9:a:9:: probability G ::::a:a1 matrix T a:a::1:: bits 2.3 * 2.1 * * 1.9 * * 1.6 * *** ** Relative 1.4 ***** ** Entropy 1.2 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCGCGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:84150417-84150497 20 1.95e-05 TACTCCCAAC TCTCGCGA GACTGGGCGA chr14:100705084-10070516 72 1.95e-05 AGCGCGGAAG TCTCGCGA G chr1:19923395-19923475 17 1.95e-05 CAGCGGATCA TCTCGCGA TATCTGGAGC chr3:14220314-14220394 10 1.95e-05 CTCTTGTGT TCTCGCGA GAGGCGGGAA chr18:47018861-47018941 30 1.95e-05 GAACTTGACT TCTCGCGA GATTCGTAGC chr6:146285547-146285627 64 1.95e-05 TACAGTGGAG TCTCGCGA TAGCTCTGC chr17:37607558-37607638 20 1.95e-05 GGCATCGAAA TCTCGCGA ATATTGGTCA chr12:129308512-12930859 43 1.95e-05 CCGCCGCCCT TCTCGCGA GACTGCCGGG chr15:40075007-40075087 44 1.95e-05 ATGCTTCCGG TCTCGCGA TAGCGGAAAG chr6:35995403-35995483 23 1.95e-05 ATTGTTCTCT TCTCGCGA GAACTGCTCC chr1:110881560-110881640 63 1.95e-05 GCTTACCGTC TCTCGCGA TATCGCTGTG chr16:67867795-67867875 43 1.95e-05 TTAATGTAAC TCTCGCGA TGCTCCCGCA chr2:120517264-120517344 15 1.95e-05 TGGCCTCGCC TCTCGCGA GATCGCCTCC chr2:25194947-25195027 22 1.95e-05 GAGACGGGAG TCTCGCGA TGCTAGCGCG chr9:6681684-6681764 7 1.95e-05 TGGGGC TCTCGCGA GACCCGGCGC chrX:13752712-13752792 45 1.95e-05 TGGGATGTGC TCTCGCGA TACGTAGGCG chr15:66648988-66649068 45 1.95e-05 TAAGCGCGCT TCTCGCGA TACTCGGGAA chr17:27717254-27717334 56 1.95e-05 AGGCGGAAAA TCTCGCGA GATCGGAGAC chr9:98637853-98637933 28 1.95e-05 AAGATTTCGT TCTCGCGA GATCCCAATG chr13:21750696-21750776 44 1.95e-05 CGCAGTCCTC TCTCGCGA GAGCCGAAGT chr15:22833376-22833456 46 1.95e-05 GAGCGCGAAC TCTCGCGA GAATGCCGCC chr1:78148339-78148419 52 1.95e-05 CCCACTCGCA TCTCGCGA GCTTCCACTA chr7:2272588-2272668 7 1.95e-05 CTGCGC TCTCGCGA GACCTGCGTG chr16:90088984-90089064 28 1.95e-05 CCCGGCGGAG TCTCGCGA GGATCTTGTG chr9:6413102-6413182 45 1.95e-05 CCGGCGTGGA TCTCGCGA GATCCGGCTT chr6:44355224-44355304 21 1.95e-05 ACCGCCGCTA TCTCGCGA GAGCCGTAGT chr7:134671215-134671295 26 1.95e-05 CTGTCCGAAG TCTCGCGA GGGCGGACCC chr1:6296048-6296128 58 1.95e-05 GCCTGCCAGT TCTCGCGA GAACTCCGGC chr13:42846063-42846143 70 1.95e-05 CGCGCTGCCC TCTCGCGA GAG chr15:85197523-85197603 41 1.95e-05 GCCGCGCGGC TCTCGCGA GATGTGGGCA chr17:55162348-55162428 31 1.95e-05 ATGACGGCTC TCTCGCGA GAGCGCGAGC chr10:51565129-51565209 18 1.95e-05 CGAGCGGAGA TCTCGCGA GACTGTCAGA chr5:176449617-176449697 67 1.95e-05 ACCCACCAAA TCTCGCGA TACCTA chr4:26321178-26321258 55 1.95e-05 AGGGGCACGT TCTCGCGA GGTTTAGGAA chr15:75287756-75287836 65 1.95e-05 AGAGCGGAAG TCTCGCGA GAGTGACT chr12:29534153-29534233 30 1.95e-05 AATGTACAGA TCTCGCGA TATTCCCTTT chr15:44580784-44580864 24 1.95e-05 GAAGCAACGT TCTCGCGA CAAGAGGGGT chr19:4124145-4124225 17 1.95e-05 CGGACCGGCT TCTCGCGA TAACGGGATC chr16:87985052-87985132 2 1.95e-05 C TCTCGCGA GGACGGACGC chr6:147981707-147981787 61 1.95e-05 ccctcgctgt tctcgcga tagtgagaga chr17:7760883-7760963 44 1.95e-05 ACGGCACAGA TCTCGCGA GCTTCTCCTA chr11:13484795-13484875 66 1.95e-05 CCAGCAGCGT TCTCGCGA GAACGGT chr3:49131498-49131578 23 1.95e-05 CGATTGCTCC TCTCGCGA TAATCGGGGC chr9:88555908-88555988 29 1.95e-05 TCGTCTCTAA TCTCGCGA GAAGAGAAGG chr17:4167251-4167331 62 1.95e-05 AATCACCAAG TCTCGCGA GAATCGCGGG chr17:53046027-53046107 48 1.95e-05 GCGTGCTCCG TCTCGCGA GATCTGGGTT chr17:4843526-4843606 28 1.95e-05 GTTGGAGCGC TCTCGCGA TAGACACAGC chr6:97731106-97731186 66 1.95e-05 CCCCACGAAT TCTCGCGA GAGTCCG chr5:139493585-139493665 42 1.95e-05 CTCCCGCAGA TCTCGCGA GAGTGGCTGA chr12:49351289-49351369 59 1.95e-05 TAGCGGCAGT TCTCGCGA GACCCATCAC chr2:54483376-54483456 52 1.95e-05 CACCCCTCAG TCTCGCGA CACTCActcc chr18:75705684-75705764 35 3.26e-05 aaccatcaga tctcgtga gacccattca chr1:43824459-43824539 40 3.26e-05 GCCGCTAGAC TCTCGTGA TAGCTGAGAC chr1:245508951-245509031 43 3.26e-05 gtgagtgagt tctcgtga gatctggttg chr5:169010695-169010775 27 3.26e-05 TGGGCGGACG TCTCGTGA GACGTGGGAC chr1:232941105-232941185 21 3.26e-05 TGCTCCGGTT TCTCGTGA GACCCCGGGG chr15:69452892-69452972 9 6.26e-05 GGCTGGGA TCTCGCGG GAAGAGCTGC chr6:71122897-71122977 44 6.26e-05 AACCTCCCGT TCTCGCGG GAACTTGGGA chr4:17812527-17812607 26 6.26e-05 GATTTCCCCC TCTCGCGG GAATTATTTG chr15:78730430-78730510 53 6.26e-05 TGTCCGACGA TCTCGCGG GAGTTAGGCG chr1:231473943-231474023 47 6.26e-05 TTCCGCGAAC TCTCGCGG GATTGACGGG chr12:125473645-12547372 37 7.53e-05 CGGGTTGTGT TATCGCGA GAACTGTAAC chr15:99791480-99791560 63 7.53e-05 CACAGGGGAT TATCGCGA GGTTCCGTGC chr15:34880684-34880764 28 7.53e-05 actcacccac tatcgcga gaacagcctg chr17:78121090-78121170 5 1.05e-04 CTGC TCTCGCGC CATATGCAGT chr20:30539737-30539817 53 1.05e-04 CGCTTGCGGC TCTCGCGC GACCCCGGGA chrX:118740402-118740482 39 1.05e-04 CGTCGCAGAA TCTCGCGC GACGTACTTT chr2:136743163-136743243 51 1.18e-04 GCTGCGGCTA TCTCGAGA TCCCGGAGCG chrX:54070826-54070906 72 1.57e-04 TGAGGGCTGG ACTCGCGA G chr11:58346288-58346368 53 1.57e-04 ACTTTGGGAT TGTCGCGA GACACAGCCG chr16:85004254-85004334 57 1.77e-04 GTATTTGCTG TCTCGTGG CGCCCCCTGG chr22:50051164-50051244 41 1.77e-04 aaccatcaga tctcgtgg gaactcacta chr10:135186871-13518695 68 2.14e-04 ACCAGGCGGC CCTCGCGA GATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:84150417-84150497 1.9e-05 19_[+1]_53 chr14:100705084-10070516 1.9e-05 71_[+1]_1 chr1:19923395-19923475 1.9e-05 16_[+1]_56 chr3:14220314-14220394 1.9e-05 9_[+1]_63 chr18:47018861-47018941 1.9e-05 29_[+1]_43 chr6:146285547-146285627 1.9e-05 63_[+1]_9 chr17:37607558-37607638 1.9e-05 19_[+1]_53 chr12:129308512-12930859 1.9e-05 42_[+1]_30 chr15:40075007-40075087 1.9e-05 43_[+1]_29 chr6:35995403-35995483 1.9e-05 22_[+1]_50 chr1:110881560-110881640 1.9e-05 62_[+1]_10 chr16:67867795-67867875 1.9e-05 42_[+1]_30 chr2:120517264-120517344 1.9e-05 14_[+1]_58 chr2:25194947-25195027 1.9e-05 21_[+1]_51 chr9:6681684-6681764 1.9e-05 6_[+1]_66 chrX:13752712-13752792 1.9e-05 44_[+1]_28 chr15:66648988-66649068 1.9e-05 44_[+1]_28 chr17:27717254-27717334 1.9e-05 55_[+1]_17 chr9:98637853-98637933 1.9e-05 27_[+1]_45 chr13:21750696-21750776 1.9e-05 43_[+1]_29 chr15:22833376-22833456 1.9e-05 45_[+1]_27 chr1:78148339-78148419 1.9e-05 51_[+1]_21 chr7:2272588-2272668 1.9e-05 6_[+1]_66 chr16:90088984-90089064 1.9e-05 27_[+1]_45 chr9:6413102-6413182 1.9e-05 44_[+1]_28 chr6:44355224-44355304 1.9e-05 20_[+1]_52 chr7:134671215-134671295 1.9e-05 25_[+1]_47 chr1:6296048-6296128 1.9e-05 57_[+1]_15 chr13:42846063-42846143 1.9e-05 69_[+1]_3 chr15:85197523-85197603 1.9e-05 40_[+1]_32 chr17:55162348-55162428 1.9e-05 30_[+1]_42 chr10:51565129-51565209 1.9e-05 17_[+1]_55 chr5:176449617-176449697 1.9e-05 66_[+1]_6 chr4:26321178-26321258 1.9e-05 54_[+1]_18 chr15:75287756-75287836 1.9e-05 64_[+1]_8 chr12:29534153-29534233 1.9e-05 29_[+1]_43 chr15:44580784-44580864 1.9e-05 23_[+1]_49 chr19:4124145-4124225 1.9e-05 16_[+1]_56 chr16:87985052-87985132 1.9e-05 1_[+1]_71 chr6:147981707-147981787 1.9e-05 60_[+1]_12 chr17:7760883-7760963 1.9e-05 43_[+1]_29 chr11:13484795-13484875 1.9e-05 65_[+1]_7 chr3:49131498-49131578 1.9e-05 22_[+1]_50 chr9:88555908-88555988 1.9e-05 28_[+1]_44 chr17:4167251-4167331 1.9e-05 61_[+1]_11 chr17:53046027-53046107 1.9e-05 47_[+1]_25 chr17:4843526-4843606 1.9e-05 27_[+1]_45 chr6:97731106-97731186 1.9e-05 65_[+1]_7 chr5:139493585-139493665 1.9e-05 41_[+1]_31 chr12:49351289-49351369 1.9e-05 58_[+1]_14 chr2:54483376-54483456 1.9e-05 51_[+1]_21 chr18:75705684-75705764 3.3e-05 34_[+1]_38 chr1:43824459-43824539 3.3e-05 39_[+1]_33 chr1:245508951-245509031 3.3e-05 42_[+1]_30 chr5:169010695-169010775 3.3e-05 26_[+1]_46 chr1:232941105-232941185 3.3e-05 20_[+1]_52 chr15:69452892-69452972 6.3e-05 8_[+1]_64 chr6:71122897-71122977 6.3e-05 43_[+1]_29 chr4:17812527-17812607 6.3e-05 25_[+1]_47 chr15:78730430-78730510 6.3e-05 52_[+1]_20 chr1:231473943-231474023 6.3e-05 46_[+1]_26 chr12:125473645-12547372 7.5e-05 36_[+1]_36 chr15:99791480-99791560 7.5e-05 62_[+1]_10 chr15:34880684-34880764 7.5e-05 27_[+1]_45 chr17:78121090-78121170 0.00011 4_[+1]_68 chr20:30539737-30539817 0.00011 52_[+1]_20 chrX:118740402-118740482 0.00011 38_[+1]_34 chr2:136743163-136743243 0.00012 50_[+1]_22 chrX:54070826-54070906 0.00016 71_[+1]_1 chr11:58346288-58346368 0.00016 52_[+1]_20 chr16:85004254-85004334 0.00018 56_[+1]_16 chr22:50051164-50051244 0.00018 40_[+1]_32 chr10:135186871-13518695 0.00021 67_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCGCGA width=8 seqs=73 chr16:84150417-84150497 ( 20) TCTCGCGA 1 chr14:100705084-10070516 ( 72) TCTCGCGA 1 chr1:19923395-19923475 ( 17) TCTCGCGA 1 chr3:14220314-14220394 ( 10) TCTCGCGA 1 chr18:47018861-47018941 ( 30) TCTCGCGA 1 chr6:146285547-146285627 ( 64) TCTCGCGA 1 chr17:37607558-37607638 ( 20) TCTCGCGA 1 chr12:129308512-12930859 ( 43) TCTCGCGA 1 chr15:40075007-40075087 ( 44) TCTCGCGA 1 chr6:35995403-35995483 ( 23) TCTCGCGA 1 chr1:110881560-110881640 ( 63) TCTCGCGA 1 chr16:67867795-67867875 ( 43) TCTCGCGA 1 chr2:120517264-120517344 ( 15) TCTCGCGA 1 chr2:25194947-25195027 ( 22) TCTCGCGA 1 chr9:6681684-6681764 ( 7) TCTCGCGA 1 chrX:13752712-13752792 ( 45) TCTCGCGA 1 chr15:66648988-66649068 ( 45) TCTCGCGA 1 chr17:27717254-27717334 ( 56) TCTCGCGA 1 chr9:98637853-98637933 ( 28) TCTCGCGA 1 chr13:21750696-21750776 ( 44) TCTCGCGA 1 chr15:22833376-22833456 ( 46) TCTCGCGA 1 chr1:78148339-78148419 ( 52) TCTCGCGA 1 chr7:2272588-2272668 ( 7) TCTCGCGA 1 chr16:90088984-90089064 ( 28) TCTCGCGA 1 chr9:6413102-6413182 ( 45) TCTCGCGA 1 chr6:44355224-44355304 ( 21) TCTCGCGA 1 chr7:134671215-134671295 ( 26) TCTCGCGA 1 chr1:6296048-6296128 ( 58) TCTCGCGA 1 chr13:42846063-42846143 ( 70) TCTCGCGA 1 chr15:85197523-85197603 ( 41) TCTCGCGA 1 chr17:55162348-55162428 ( 31) TCTCGCGA 1 chr10:51565129-51565209 ( 18) TCTCGCGA 1 chr5:176449617-176449697 ( 67) TCTCGCGA 1 chr4:26321178-26321258 ( 55) TCTCGCGA 1 chr15:75287756-75287836 ( 65) TCTCGCGA 1 chr12:29534153-29534233 ( 30) TCTCGCGA 1 chr15:44580784-44580864 ( 24) TCTCGCGA 1 chr19:4124145-4124225 ( 17) TCTCGCGA 1 chr16:87985052-87985132 ( 2) TCTCGCGA 1 chr6:147981707-147981787 ( 61) TCTCGCGA 1 chr17:7760883-7760963 ( 44) TCTCGCGA 1 chr11:13484795-13484875 ( 66) TCTCGCGA 1 chr3:49131498-49131578 ( 23) TCTCGCGA 1 chr9:88555908-88555988 ( 29) TCTCGCGA 1 chr17:4167251-4167331 ( 62) TCTCGCGA 1 chr17:53046027-53046107 ( 48) TCTCGCGA 1 chr17:4843526-4843606 ( 28) TCTCGCGA 1 chr6:97731106-97731186 ( 66) TCTCGCGA 1 chr5:139493585-139493665 ( 42) TCTCGCGA 1 chr12:49351289-49351369 ( 59) TCTCGCGA 1 chr2:54483376-54483456 ( 52) TCTCGCGA 1 chr18:75705684-75705764 ( 35) TCTCGTGA 1 chr1:43824459-43824539 ( 40) TCTCGTGA 1 chr1:245508951-245509031 ( 43) TCTCGTGA 1 chr5:169010695-169010775 ( 27) TCTCGTGA 1 chr1:232941105-232941185 ( 21) TCTCGTGA 1 chr15:69452892-69452972 ( 9) TCTCGCGG 1 chr6:71122897-71122977 ( 44) TCTCGCGG 1 chr4:17812527-17812607 ( 26) TCTCGCGG 1 chr15:78730430-78730510 ( 53) TCTCGCGG 1 chr1:231473943-231474023 ( 47) TCTCGCGG 1 chr12:125473645-12547372 ( 37) TATCGCGA 1 chr15:99791480-99791560 ( 63) TATCGCGA 1 chr15:34880684-34880764 ( 28) TATCGCGA 1 chr17:78121090-78121170 ( 5) TCTCGCGC 1 chr20:30539737-30539817 ( 53) TCTCGCGC 1 chrX:118740402-118740482 ( 39) TCTCGCGC 1 chr2:136743163-136743243 ( 51) TCTCGAGA 1 chrX:54070826-54070906 ( 72) ACTCGCGA 1 chr11:58346288-58346368 ( 53) TGTCGCGA 1 chr16:85004254-85004334 ( 57) TCTCGTGG 1 chr22:50051164-50051244 ( 41) TCTCGTGG 1 chr10:135186871-13518695 ( 68) CCTCGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.11038 E= 2.7e-084 -384 -445 -1283 227 -226 165 -446 -1283 -1283 -1283 -1283 231 -1283 174 -1283 -1283 -1283 -1283 173 -1283 -384 157 -1283 -107 -1283 -1283 173 -1283 214 -287 -166 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 2.7e-084 0.013699 0.013699 0.000000 0.972603 0.041096 0.945205 0.013699 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.013699 0.890411 0.000000 0.095890 0.000000 0.000000 1.000000 0.000000 0.863014 0.041096 0.095890 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCGCGA MEME-1 regular expression -------------------------------------------------------------------------------- TCTCGCGA -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAVATGG MEME-2 width = 8 sites = 37 llr = 321 E-value = 1.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAVATGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2a84a::: pos.-specific C 6:24:::: probability G :::2::aa matrix T 2::1:a:: bits 2.3 ** 2.1 * ** 1.9 * ** 1.6 * **** Relative 1.4 ** **** Entropy 1.2 ** **** (12.5 bits) 0.9 ** **** 0.7 ** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel CAACATGG consensus T CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAVATGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:6673955-6674035 41 8.12e-06 TGCAGCTGGT CAAAATGG CAGATGGTCC chr6:13625204-13625284 11 8.12e-06 TTAGCTCAAG CAAAATGG TTGGGAACCA chr9:35103336-35103416 26 8.12e-06 GCCTGATGGC CAAAATGG AGGCTATTTT chr22:46500186-46500266 38 8.12e-06 AAGCGCTCTG CAAAATGG CCGCCCGGCC chr14:31494810-31494890 54 8.12e-06 TACTAAAAGC CAAAATGG CTGCCCCGAG chr6:36308899-36308979 58 8.12e-06 CGGccattcg caaaatgg ttaccagacc chr1:61707204-61707284 67 8.12e-06 TGAACAGGTT CAAAATGG TGACCA chr5:140937497-140937577 14 8.12e-06 GTCACAAATA CAAAATGG AGTTAGCTGG chr17:2689638-2689718 35 2.05e-05 CGCCAGAGGG CAACATGG CTGCCATCCT chr5:89481324-89481404 56 2.05e-05 AAGTTGAAGC CAACATGG CCAGAAATCA chr18:23501742-23501822 23 2.60e-05 TGTGCGAAGG TAAAATGG ACACCCCGTC chr1:93816591-93816671 59 2.60e-05 TCTCTTTGTG TAAAATGG GAATGATAAC chr11:58554315-58554395 42 3.96e-05 atgccatttt taacatgg gcgcttataa chr15:38547900-38547980 59 3.96e-05 AACTGCCCTG TAACATGG ATTTTATTTG chr12:110517767-11051784 21 6.02e-05 ggccacaaac aaacatgg cgtcaagcgc chr3:14220314-14220394 43 6.02e-05 GCAGGGTTTG AAACATGG CGGACGACGT chr13:50018064-50018144 35 6.02e-05 CAGCCACACA CAAGATGG CAGCCTCACA chr1:36396054-36396134 69 6.02e-05 aaagagtttt aaacatgg aaat chr21:21420642-21420722 22 6.02e-05 aggccactcc caagatgg cggcaagcct chr3:185655198-185655278 53 6.02e-05 CCCGCCAGCC CAAGATGG CTGCGGCGGA chr15:79165937-79166017 7 6.02e-05 CCGTTG CAAGATGG CGGCGCCATC chr7:123175051-123175131 53 6.02e-05 cggggagaag aaacatgg caggagaaag chr21:20132129-20132209 11 6.02e-05 gagccacttc caagatgg tggcaagccg chr12:8234673-8234753 51 7.69e-05 TTCCAGGTTT CAATATGG CTCCCCGCGT chr3:160117303-160117383 29 7.69e-05 GGAGCGACAA TAAGATGG CGGTGATAAT chr3:45112820-45112900 8 7.69e-05 TGTAGTC CAATATGG TTTCCAATCA chr17:38375427-38375507 6 7.69e-05 CTTCC TAAGATGG CGTCCACTCA chr16:2398854-2398934 18 1.22e-04 CACCATGAGC CACCATGG TGAACTCACC chr5:137805934-137806014 53 1.22e-04 CCACAGCAGA CACCATGG GAGGAATGTG chr18:712528-712608 54 1.22e-04 TCCTGCCGCG CACCATGG CCCCTGCGCC chr14:102781257-10278133 68 1.28e-04 agtatgtccc aaatatgg cgtgg chr10:31499283-31499363 9 1.36e-04 GACTCAAC TACAATGG CGGCGATCAG chr19:17709943-17710023 62 1.36e-04 ttgtcaaggt tacaatgg ccgagttggt chr18:712328-712408 65 1.57e-04 CGTCCGCGCT TACCATGG CGTCCGCG chr20:3762037-3762117 61 1.88e-04 TGTTTTCTGA AACCATGG AAACCATTCC chr15:40803445-40803525 13 1.88e-04 TTTCTATGAC AACCATGG CGTCTCTACG chr10:6970661-6970741 33 2.35e-04 CTTTGCAGTG CTAAATGG CTTATCTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAVATGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:6673955-6674035 8.1e-06 40_[+2]_32 chr6:13625204-13625284 8.1e-06 10_[+2]_62 chr9:35103336-35103416 8.1e-06 25_[+2]_47 chr22:46500186-46500266 8.1e-06 37_[+2]_35 chr14:31494810-31494890 8.1e-06 53_[+2]_19 chr6:36308899-36308979 8.1e-06 57_[+2]_15 chr1:61707204-61707284 8.1e-06 66_[+2]_6 chr5:140937497-140937577 8.1e-06 13_[+2]_59 chr17:2689638-2689718 2.1e-05 34_[+2]_38 chr5:89481324-89481404 2.1e-05 55_[+2]_17 chr18:23501742-23501822 2.6e-05 22_[+2]_50 chr1:93816591-93816671 2.6e-05 58_[+2]_14 chr11:58554315-58554395 4e-05 41_[+2]_31 chr15:38547900-38547980 4e-05 58_[+2]_14 chr12:110517767-11051784 6e-05 20_[+2]_52 chr3:14220314-14220394 6e-05 42_[+2]_30 chr13:50018064-50018144 6e-05 34_[+2]_38 chr1:36396054-36396134 6e-05 68_[+2]_4 chr21:21420642-21420722 6e-05 21_[+2]_51 chr3:185655198-185655278 6e-05 52_[+2]_20 chr15:79165937-79166017 6e-05 6_[+2]_66 chr7:123175051-123175131 6e-05 52_[+2]_20 chr21:20132129-20132209 6e-05 10_[+2]_62 chr12:8234673-8234753 7.7e-05 50_[+2]_22 chr3:160117303-160117383 7.7e-05 28_[+2]_44 chr3:45112820-45112900 7.7e-05 7_[+2]_65 chr17:38375427-38375507 7.7e-05 5_[+2]_67 chr16:2398854-2398934 0.00012 17_[+2]_55 chr5:137805934-137806014 0.00012 52_[+2]_20 chr18:712528-712608 0.00012 53_[+2]_19 chr14:102781257-10278133 0.00013 67_[+2]_5 chr10:31499283-31499363 0.00014 8_[+2]_64 chr19:17709943-17710023 0.00014 61_[+2]_11 chr18:712328-712408 0.00016 64_[+2]_8 chr20:3762037-3762117 0.00019 60_[+2]_12 chr15:40803445-40803525 0.00019 12_[+2]_60 chr10:6970661-6970741 0.00023 32_[+2]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAVATGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAVATGG width=8 seqs=37 chr8:6673955-6674035 ( 41) CAAAATGG 1 chr6:13625204-13625284 ( 11) CAAAATGG 1 chr9:35103336-35103416 ( 26) CAAAATGG 1 chr22:46500186-46500266 ( 38) CAAAATGG 1 chr14:31494810-31494890 ( 54) CAAAATGG 1 chr6:36308899-36308979 ( 58) CAAAATGG 1 chr1:61707204-61707284 ( 67) CAAAATGG 1 chr5:140937497-140937577 ( 14) CAAAATGG 1 chr17:2689638-2689718 ( 35) CAACATGG 1 chr5:89481324-89481404 ( 56) CAACATGG 1 chr18:23501742-23501822 ( 23) TAAAATGG 1 chr1:93816591-93816671 ( 59) TAAAATGG 1 chr11:58554315-58554395 ( 42) TAACATGG 1 chr15:38547900-38547980 ( 59) TAACATGG 1 chr12:110517767-11051784 ( 21) AAACATGG 1 chr3:14220314-14220394 ( 43) AAACATGG 1 chr13:50018064-50018144 ( 35) CAAGATGG 1 chr1:36396054-36396134 ( 69) AAACATGG 1 chr21:21420642-21420722 ( 22) CAAGATGG 1 chr3:185655198-185655278 ( 53) CAAGATGG 1 chr15:79165937-79166017 ( 7) CAAGATGG 1 chr7:123175051-123175131 ( 53) AAACATGG 1 chr21:20132129-20132209 ( 11) CAAGATGG 1 chr12:8234673-8234753 ( 51) CAATATGG 1 chr3:160117303-160117383 ( 29) TAAGATGG 1 chr3:45112820-45112900 ( 8) CAATATGG 1 chr17:38375427-38375507 ( 6) TAAGATGG 1 chr16:2398854-2398934 ( 18) CACCATGG 1 chr5:137805934-137806014 ( 53) CACCATGG 1 chr18:712528-712608 ( 54) CACCATGG 1 chr14:102781257-10278133 ( 68) AAATATGG 1 chr10:31499283-31499363 ( 9) TACAATGG 1 chr19:17709943-17710023 ( 62) TACAATGG 1 chr18:712328-712408 ( 65) TACCATGG 1 chr20:3762037-3762117 ( 61) AACCATGG 1 chr15:40803445-40803525 ( 13) AACCATGG 1 chr10:6970661-6970741 ( 33) CTAAATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAVATGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3679 E= 1.8e-010 -5 92 -1185 27 231 -1185 -1185 -289 200 -47 -1185 -1185 84 33 -68 -131 235 -1185 -1185 -1185 -1185 -1185 -1185 231 -1185 -1185 173 -1185 -1185 -1185 173 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAVATGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.8e-010 0.189189 0.567568 0.000000 0.243243 0.972973 0.000000 0.000000 0.027027 0.783784 0.216216 0.000000 0.000000 0.351351 0.378378 0.189189 0.081081 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAVATGG MEME-2 regular expression -------------------------------------------------------------------------------- [CT]A[AC][CA]ATGG -------------------------------------------------------------------------------- Time 8.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATYTT MEME-3 width = 8 sites = 30 llr = 268 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATYTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a::1: pos.-specific C :aa:1511 probability G 9::::::: matrix T ::::9589 bits 2.3 * 2.1 * 1.9 ** * 1.6 **** * Relative 1.4 ***** ** Entropy 1.2 ***** ** (12.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCATTTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:58554315-58554395 34 8.70e-06 agagcaggat gccatttt taacatgggc chr11:10830147-10830227 59 8.70e-06 AGGGACGGCG GCCATTTT AGAGCGCTCC chr1:61649902-61649982 6 8.70e-06 AGGCC GCCATTTT AAGGAGCCAG chr3:185655198-185655278 13 8.70e-06 CGGCTTCTCC GCCATTTT GTGCCTCTGG chr15:93461243-93461323 3 8.70e-06 CG GCCATTTT GTAAGTTAGC chr19:41870163-41870243 51 8.70e-06 AAAGGGTTCC GCCATTTT GGGCGTGGCT chr22:46500186-46500266 60 8.70e-06 CCGGCCTGCC GCCATTTT GTGGCTGAGG chr9:131495667-131495747 71 2.17e-05 CCGTGCGGTC GCCATCTT AA chrX:54070826-54070906 53 2.17e-05 CAAGGCGACC GCCATCTT ATGAGGGCTG chr11:10879304-10879384 30 2.17e-05 GCCCGCGACC GCCATCTT AGGCAGTTCC chrX:1021132-1021212 70 2.17e-05 gtggcccgcc gccatctt ggg chr9:94860364-94860444 44 2.17e-05 catctcggca gccatctt ggctaccctg chrX:47342075-47342155 34 2.17e-05 TACGGGAGCC GCCATCTT GGAAGGGCGG chr1:30702940-30703020 21 2.17e-05 aaggcttgcg gccatctt gggagcagcc chr7:134270845-134270925 25 2.17e-05 aaggcttgct gccatctt gagagtggct chr12:8234673-8234753 3 3.02e-05 TT GCCATTAT CCAAGACGGT chr16:87985052-87985132 18 3.02e-05 GAGGACGGAC GCCATTAT CGCATCTCCC chr17:74732599-74732679 28 3.02e-05 cgcccaggcc gccATTAT CTCGCCGCCA chr15:79165937-79166017 19 4.28e-05 AGATGGCGGC GCCATCAT GGCCGCCGGC chr20:3762037-3762117 44 6.43e-05 GCTGGGAGCG GCCATATT GTTTTCTGAA chr1:172419170-172419250 9 8.29e-05 AGTGAGAG GCCATTCT CCAGCAGGGT chr17:38309799-38309879 51 8.29e-05 aaggtgctgc accatttt acgtgactag chr9:35103336-35103416 36 8.87e-05 CAAAATGGAG GCTATTTT TCGCGGGCAT chr18:3297518-3297598 60 1.21e-04 tttggcaagc gccacctt ctggctggag chr1:175288910-175288990 42 1.21e-04 GGAGGTGACT GCCACCTT GTGGCCACAC chr1:211828708-211828788 19 1.21e-04 GAGCCATGGC GCCACCTT GCGGTTCTGT chr1:93816591-93816671 25 1.21e-04 ctgCTTGGGA GCCATTTC CTTTATCCTT chr22:23455171-23455251 13 1.57e-04 TCTGACGTGG CCCATTTT ACCAGAAGAA chr17:2689638-2689718 45 1.57e-04 CAACATGGCT GCCATCCT AGAAACAAGC chr9:132648067-132648147 2 1.86e-04 C GCCATCTC GTTCCTCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:58554315-58554395 8.7e-06 33_[+3]_39 chr11:10830147-10830227 8.7e-06 58_[+3]_14 chr1:61649902-61649982 8.7e-06 5_[+3]_67 chr3:185655198-185655278 8.7e-06 12_[+3]_60 chr15:93461243-93461323 8.7e-06 2_[+3]_70 chr19:41870163-41870243 8.7e-06 50_[+3]_22 chr22:46500186-46500266 8.7e-06 59_[+3]_13 chr9:131495667-131495747 2.2e-05 70_[+3]_2 chrX:54070826-54070906 2.2e-05 52_[+3]_20 chr11:10879304-10879384 2.2e-05 29_[+3]_43 chrX:1021132-1021212 2.2e-05 69_[+3]_3 chr9:94860364-94860444 2.2e-05 43_[+3]_29 chrX:47342075-47342155 2.2e-05 33_[+3]_39 chr1:30702940-30703020 2.2e-05 20_[+3]_52 chr7:134270845-134270925 2.2e-05 24_[+3]_48 chr12:8234673-8234753 3e-05 2_[+3]_70 chr16:87985052-87985132 3e-05 17_[+3]_55 chr17:74732599-74732679 3e-05 27_[+3]_45 chr15:79165937-79166017 4.3e-05 18_[+3]_54 chr20:3762037-3762117 6.4e-05 43_[+3]_29 chr1:172419170-172419250 8.3e-05 8_[+3]_64 chr17:38309799-38309879 8.3e-05 50_[+3]_22 chr9:35103336-35103416 8.9e-05 35_[+3]_37 chr18:3297518-3297598 0.00012 59_[+3]_13 chr1:175288910-175288990 0.00012 41_[+3]_31 chr1:211828708-211828788 0.00012 18_[+3]_54 chr1:93816591-93816671 0.00012 24_[+3]_48 chr22:23455171-23455251 0.00016 12_[+3]_60 chr17:2689638-2689718 0.00016 44_[+3]_28 chr9:132648067-132648147 0.00019 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATYTT width=8 seqs=30 chr11:58554315-58554395 ( 34) GCCATTTT 1 chr11:10830147-10830227 ( 59) GCCATTTT 1 chr1:61649902-61649982 ( 6) GCCATTTT 1 chr3:185655198-185655278 ( 13) GCCATTTT 1 chr15:93461243-93461323 ( 3) GCCATTTT 1 chr19:41870163-41870243 ( 51) GCCATTTT 1 chr22:46500186-46500266 ( 60) GCCATTTT 1 chr9:131495667-131495747 ( 71) GCCATCTT 1 chrX:54070826-54070906 ( 53) GCCATCTT 1 chr11:10879304-10879384 ( 30) GCCATCTT 1 chrX:1021132-1021212 ( 70) GCCATCTT 1 chr9:94860364-94860444 ( 44) GCCATCTT 1 chrX:47342075-47342155 ( 34) GCCATCTT 1 chr1:30702940-30703020 ( 21) GCCATCTT 1 chr7:134270845-134270925 ( 25) GCCATCTT 1 chr12:8234673-8234753 ( 3) GCCATTAT 1 chr16:87985052-87985132 ( 18) GCCATTAT 1 chr17:74732599-74732679 ( 28) GCCATTAT 1 chr15:79165937-79166017 ( 19) GCCATCAT 1 chr20:3762037-3762117 ( 44) GCCATATT 1 chr1:172419170-172419250 ( 9) GCCATTCT 1 chr17:38309799-38309879 ( 51) ACCATTTT 1 chr9:35103336-35103416 ( 36) GCTATTTT 1 chr18:3297518-3297598 ( 60) GCCACCTT 1 chr1:175288910-175288990 ( 42) GCCACCTT 1 chr1:211828708-211828788 ( 19) GCCACCTT 1 chr1:93816591-93816671 ( 25) GCCATTTC 1 chr22:23455171-23455251 ( 13) CCCATTTT 1 chr17:2689638-2689718 ( 45) GCCATCCT 1 chr9:132648067-132648147 ( 2) GCCATCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 1.1e-006 -256 -317 163 -1155 -1155 174 -1155 -1155 -1155 169 -1155 -259 235 -1155 -1155 -1155 -1155 -158 -1155 216 -256 64 -1155 131 -56 -217 -1155 199 -1155 -217 -1155 221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.1e-006 0.033333 0.033333 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.966667 0.000000 0.033333 1.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.033333 0.466667 0.000000 0.500000 0.133333 0.066667 0.000000 0.800000 0.000000 0.066667 0.000000 0.933333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-3 regular expression -------------------------------------------------------------------------------- GCCAT[TC]TT -------------------------------------------------------------------------------- Time 12.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGCGAGA MEME-4 width = 8 sites = 23 llr = 206 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGCGAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::8:a pos.-specific C 3a:a:::: probability G ::9:a29: matrix T 7:::::1: bits 2.3 * 2.1 * 1.9 * 1.6 * ** * Relative 1.4 ******** Entropy 1.2 ******** (12.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCGAGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:37607558-37607638 49 1.91e-05 TGCGTCGGCC TCGCGAGA TTTCTTTCAG chr10:7830009-7830089 27 1.91e-05 GTTGCAACGG TCGCGAGA CTCCCCTCGC chr2:136743163-136743243 33 1.91e-05 TCCAGAAAGA TCGCGAGA GCTGCGGCTA chr13:42846063-42846143 50 1.91e-05 GGAATTTTTC TCGCGAGA GGCGCGCTGC chr10:51565129-51565209 71 1.91e-05 GATTGTGTTG TCGCGAGA AC chr5:176449617-176449697 27 1.91e-05 CGCCCAAACC TCGCGAGA TTTGTTGGCT chr12:57940994-57941074 22 1.91e-05 AAAGCAAAAG TCGCGAGA ACAGCCCTGC chr17:4167251-4167331 11 1.91e-05 GCCTGCAACC TCGCGAGA AGTGCGCGGC chr1:78148339-78148419 11 4.77e-05 CAACGAGGTC CCGCGAGA ATCGAGAGAT chr6:52284952-52285032 54 4.77e-05 GGCCCACTTA CCGCGAGA ACGCGGAGTC chr4:26321178-26321258 14 4.77e-05 TGCCTTGGCT CCGCGAGA TTTGGGGCGA chr11:13484795-13484875 25 4.77e-05 CAGCCTCTTA CCGCGAGA GCTCACAATG chr3:49131498-49131578 49 4.77e-05 GCGTCGGATC CCGCGAGA TCTGGGACTG chr10:135186871-13518695 51 4.77e-05 CAGGCCAGCG CCGCGAGA CCAGGCGGCC chr18:75705684-75705764 56 7.29e-05 ccattcacta tcacgaga acagcacggg chrX:13752712-13752792 24 7.29e-05 GAAGCAGTTC TCGCGATA CCCTGGGATG chr22:50051164-50051244 59 7.29e-05 gaactcacta tcacgaga acagcaacgg chr6:97731106-97731186 27 7.29e-05 ACCAATCGCC TCGCGATA TCTGCGCGGA chr4:17812527-17812607 10 1.02e-04 ACGGCAGTC TCGCGGGA TTTCCCCCTC chr3:194304640-194304720 31 1.02e-04 CTCTCGCTCC TCGCGGGA GGCGGTGGCT chr9:98637853-98637933 65 1.02e-04 GAGCCCGTTC TCGCGGGA TTTTCCAA chr5:169010695-169010775 48 1.02e-04 GTGGGACTTC TCGCGGGA ACTGCATTCA chr19:40993939-40994019 8 1.15e-04 AGCTTGG TCGTGAGA AGCCTGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:37607558-37607638 1.9e-05 48_[+4]_24 chr10:7830009-7830089 1.9e-05 26_[+4]_46 chr2:136743163-136743243 1.9e-05 32_[+4]_40 chr13:42846063-42846143 1.9e-05 49_[+4]_23 chr10:51565129-51565209 1.9e-05 70_[+4]_2 chr5:176449617-176449697 1.9e-05 26_[+4]_46 chr12:57940994-57941074 1.9e-05 21_[+4]_51 chr17:4167251-4167331 1.9e-05 10_[+4]_62 chr1:78148339-78148419 4.8e-05 10_[+4]_62 chr6:52284952-52285032 4.8e-05 53_[+4]_19 chr4:26321178-26321258 4.8e-05 13_[+4]_59 chr11:13484795-13484875 4.8e-05 24_[+4]_48 chr3:49131498-49131578 4.8e-05 48_[+4]_24 chr10:135186871-13518695 4.8e-05 50_[+4]_22 chr18:75705684-75705764 7.3e-05 55_[+4]_17 chrX:13752712-13752792 7.3e-05 23_[+4]_49 chr22:50051164-50051244 7.3e-05 58_[+4]_14 chr6:97731106-97731186 7.3e-05 26_[+4]_46 chr4:17812527-17812607 0.0001 9_[+4]_63 chr3:194304640-194304720 0.0001 30_[+4]_42 chr9:98637853-98637933 0.0001 64_[+4]_8 chr5:169010695-169010775 0.0001 47_[+4]_25 chr19:40993939-40994019 0.00012 7_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGCGAGA width=8 seqs=23 chr17:37607558-37607638 ( 49) TCGCGAGA 1 chr10:7830009-7830089 ( 27) TCGCGAGA 1 chr2:136743163-136743243 ( 33) TCGCGAGA 1 chr13:42846063-42846143 ( 50) TCGCGAGA 1 chr10:51565129-51565209 ( 71) TCGCGAGA 1 chr5:176449617-176449697 ( 27) TCGCGAGA 1 chr12:57940994-57941074 ( 22) TCGCGAGA 1 chr17:4167251-4167331 ( 11) TCGCGAGA 1 chr1:78148339-78148419 ( 11) CCGCGAGA 1 chr6:52284952-52285032 ( 54) CCGCGAGA 1 chr4:26321178-26321258 ( 14) CCGCGAGA 1 chr11:13484795-13484875 ( 25) CCGCGAGA 1 chr3:49131498-49131578 ( 49) CCGCGAGA 1 chr10:135186871-13518695 ( 51) CCGCGAGA 1 chr18:75705684-75705764 ( 56) TCACGAGA 1 chrX:13752712-13752792 ( 24) TCGCGATA 1 chr22:50051164-50051244 ( 59) TCACGAGA 1 chr6:97731106-97731186 ( 27) TCGCGATA 1 chr4:17812527-17812607 ( 10) TCGCGGGA 1 chr3:194304640-194304720 ( 31) TCGCGGGA 1 chr9:98637853-98637933 ( 65) TCGCGGGA 1 chr5:169010695-169010775 ( 48) TCGCGGGA 1 chr19:40993939-40994019 ( 8) TCGTGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 1.2e+001 -1117 -20 -1117 188 -1117 174 -1117 -1117 -117 -1117 159 -1117 -1117 167 -1117 -221 -1117 -1117 173 -1117 207 -1117 -80 -1117 -1117 -1117 159 -121 235 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.2e+001 0.000000 0.260870 0.000000 0.739130 0.000000 1.000000 0.000000 0.000000 0.086957 0.000000 0.913043 0.000000 0.000000 0.956522 0.000000 0.043478 0.000000 0.000000 1.000000 0.000000 0.826087 0.000000 0.173913 0.000000 0.000000 0.000000 0.913043 0.086957 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCGAGA MEME-4 regular expression -------------------------------------------------------------------------------- [TC]CGCGAGA -------------------------------------------------------------------------------- Time 15.88 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGAAAAA MEME-5 width = 8 sites = 2 llr = 25 E-value = 7.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGAAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa:aaaaa pos.-specific C :::::::: probability G ::a::::: matrix T :::::::: bits 2.3 ** ***** 2.1 ** ***** 1.9 ** ***** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:23009160-23009240 6 3.36e-06 CGTGG AAGAAAAA AGCTCCTGGG chr15:43785456-43785536 11 3.36e-06 TGCCCCACGT AAGAAAAA GGAACACGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:23009160-23009240 3.4e-06 5_[+5]_67 chr15:43785456-43785536 3.4e-06 10_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGAAAAA width=8 seqs=2 chr22:23009160-23009240 ( 6) AAGAAAAA 1 chr15:43785456-43785536 ( 11) AAGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 7.2e+003 234 -765 -765 -765 234 -765 -765 -765 -765 -765 172 -765 234 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.2e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAAAAA MEME-5 regular expression -------------------------------------------------------------------------------- AAGAAAAA -------------------------------------------------------------------------------- Time 19.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:89481324-89481404 1.29e-02 55_[+2(2.05e-05)]_17 chr1:15573661-15573741 4.76e-01 80 chr15:40803445-40803525 1.26e-01 80 chr7:134270845-134270925 1.36e-03 24_[+3(2.17e-05)]_48 chr17:2689638-2689718 4.94e-04 34_[+2(2.05e-05)]_38 chr19:17709943-17710023 3.08e-02 80 chr11:64257511-64257591 6.51e-01 80 chr14:102781257-10278133 2.50e-01 80 chr6:40691871-40691951 9.81e-01 80 chr1:93816591-93816671 4.63e-03 58_[+2(2.60e-05)]_14 chr12:49595844-49595924 7.68e-01 80 chr6:6915608-6915688 7.84e-01 80 chr7:125850-125930 2.82e-01 80 chr6:43478447-43478527 7.21e-01 80 chr19:40993939-40994019 2.48e-01 80 chr7:30811016-30811096 9.47e-02 80 chr17:38309799-38309879 4.87e-02 50_[+3(8.29e-05)]_22 chr12:92733200-92733280 8.55e-01 80 chr10:31499283-31499363 5.41e-02 80 chr6:157274901-157274981 7.86e-01 80 chr22:22052728-22052808 5.51e-01 80 chr1:227100413-227100493 7.62e-01 80 chr22:50765361-50765441 6.85e-01 80 chr21:20132129-20132209 5.30e-02 10_[+2(6.02e-05)]_14_[+2(7.69e-05)]_\ 40 chr18:23501742-23501822 4.71e-02 22_[+2(2.60e-05)]_22_[+2(6.02e-05)]_\ 20 chr17:46671375-46671455 1.33e-01 80 chr1:30702940-30703020 5.04e-03 20_[+3(2.17e-05)]_25_[+3(2.17e-05)]_\ 19 chr2:54483376-54483456 7.08e-03 29_[+1(1.95e-05)]_14_[+1(1.95e-05)]_\ 21 chr6:144020054-144020134 2.27e-01 80 chr22:19974024-19974104 5.49e-01 80 chr5:140937497-140937577 1.27e-02 13_[+2(8.12e-06)]_28_[+2(2.60e-05)]_\ 23 chr1:232941105-232941185 1.46e-02 20_[+1(3.26e-05)]_52 chrX:47342075-47342155 4.61e-02 33_[+3(2.17e-05)]_39 chr10:6970661-6970741 1.93e-01 80 chr10:135186871-13518695 1.18e-02 50_[+4(4.77e-05)]_11_[+4(1.91e-05)]_\ 3 chr7:123175051-123175131 5.53e-03 52_[+2(6.02e-05)]_20 chr19:17462847-17462927 1.53e-02 80 chr1:113683305-113683385 9.22e-02 80 chr12:49351289-49351369 5.02e-04 60_[+4(1.91e-05)]_12 chr11:45864848-45864928 1.65e-01 80 chr5:139493585-139493665 2.73e-03 43_[+4(1.91e-05)]_29 chr1:231473943-231474023 1.08e-02 46_[+1(6.26e-05)]_26 chr12:113658849-11365892 8.84e-01 80 chr6:97731106-97731186 1.13e-03 26_[+4(7.29e-05)]_33_[+4(1.91e-05)]_\ 5 chr17:4843526-4843606 5.44e-04 27_[+1(1.95e-05)]_45 chr20:3762037-3762117 1.17e-02 43_[+3(6.43e-05)]_29 chr15:38547900-38547980 2.89e-02 58_[+2(3.96e-05)]_14 chr1:61707204-61707284 6.89e-02 9_[+2(8.12e-06)]_11_[+2(7.69e-05)]_\ 30_[+2(8.12e-06)]_6 chr4:8178706-8178786 2.75e-01 80 chr17:53046027-53046107 1.79e-03 28_[+1(1.95e-05)]_13_[+4(1.91e-05)]_\ 23 chr18:712328-712408 4.03e-01 80 chr9:94860364-94860444 1.03e-01 43_[+3(2.17e-05)]_29 chr1:155804298-155804378 9.49e-01 80 chr17:4167251-4167331 1.18e-03 10_[+4(1.91e-05)]_45_[+4(1.91e-05)]_\ 9 chr16:79791225-79791305 9.60e-01 80 chr9:88555908-88555988 2.59e-04 10_[+1(1.95e-05)]_12_[+4(1.91e-05)]_\ 42 chrX:1021132-1021212 6.64e-02 3_[+3(2.17e-05)]_14_[+3(2.17e-05)]_\ 36_[+3(2.17e-05)]_3 chr22:22001130-22001210 3.20e-01 80 chr6:36308899-36308979 1.36e-02 57_[+2(8.12e-06)]_15 chr3:49131498-49131578 2.24e-03 22_[+1(1.95e-05)]_18_[+4(4.77e-05)]_\ 24 chr15:43785456-43785536 3.08e-03 10_[+5(3.36e-06)]_62 chr17:46662835-46662915 9.53e-01 80 chr11:13484795-13484875 6.10e-04 24_[+4(4.77e-05)]_35_[+4(1.91e-05)]_\ 5 chr11:58346288-58346368 3.33e-04 54_[+4(1.91e-05)]_18 chr5:180651067-180651147 9.96e-01 80 chr19:48201492-48201572 3.73e-01 80 chr15:34880684-34880764 2.80e-04 29_[+4(1.91e-05)]_43 chr19:4124761-4124841 7.37e-01 80 chr7:106619666-106619746 4.44e-02 80 chr19:40023442-40023522 9.32e-01 80 chr17:7760883-7760963 1.57e-02 43_[+1(1.95e-05)]_29 chr17:74732599-74732679 8.11e-03 27_[+3(3.02e-05)]_45 chr11:10879304-10879384 1.10e-01 29_[+3(2.17e-05)]_43 chr17:54857696-54857776 9.47e-01 80 chr6:10954891-10954971 9.68e-01 80 chr1:211828708-211828788 1.49e-01 80 chr12:57940994-57941074 1.98e-04 21_[+4(1.91e-05)]_51 chr2:75005807-75005887 9.09e-01 80 chr22:50051164-50051244 3.95e-03 58_[+4(7.29e-05)]_14 chr5:169010695-169010775 1.09e-02 26_[+1(3.26e-05)]_11_[+1(6.26e-05)]_\ 27 chr15:78730430-78730510 1.04e-02 52_[+1(6.26e-05)]_20 chr6:147981707-147981787 7.51e-04 60_[+1(1.95e-05)]_12 chr14:23938407-23938487 2.64e-01 80 chr16:87985052-87985132 3.82e-05 1_[+1(1.95e-05)]_8_[+3(3.02e-05)]_\ 55 chr14:31494810-31494890 1.82e-03 53_[+2(8.12e-06)]_19 chr19:4124145-4124225 1.15e-03 16_[+1(1.95e-05)]_56 chr3:13493277-13493357 3.22e-01 80 chr15:44580784-44580864 5.29e-03 23_[+1(1.95e-05)]_49 chr19:3462459-3462539 6.16e-01 80 chr10:63510838-63510918 5.00e-01 80 chr12:29534153-29534233 3.60e-04 29_[+1(1.95e-05)]_43 chr5:133304275-133304355 9.80e-01 80 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1.23e-01 80 chr12:110517767-11051784 2.41e-02 20_[+2(6.02e-05)]_52 chr3:128564878-128564958 8.36e-01 80 chr12:8234673-8234753 3.13e-03 2_[+3(3.02e-05)]_40_[+2(7.69e-05)]_\ 22 chr11:72504853-72504933 5.74e-01 80 chr11:58554315-58554395 4.16e-04 33_[+3(8.70e-06)]_[+2(3.96e-05)]_15_\ [+3(8.29e-05)]_8 chr16:84150417-84150497 2.07e-03 21_[+4(1.91e-05)]_51 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************