******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZFP91.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:6739381-6739461 1.0000 80 chr2:132439927-132440007 1.0000 80 chr6:97285428-97285508 1.0000 80 chr2:241937837-241937917 1.0000 80 chr22:29702849-29702929 1.0000 80 chr14:70078015-70078095 1.0000 80 chr12:53613580-53613660 1.0000 80 chr19:36427135-36427215 1.0000 80 chr22:38669158-38669238 1.0000 80 chr11:46848508-46848588 1.0000 80 chr6:43806005-43806085 1.0000 80 chr4:1966439-1966519 1.0000 80 chr11:63686884-63686964 1.0000 80 chr12:123129640-12312972 1.0000 80 chr11:119019646-11901972 1.0000 80 chr14:103034495-10303457 1.0000 80 chr3:143204180-143204260 1.0000 80 chr5:95158521-95158601 1.0000 80 chr1:56975928-56976008 1.0000 80 chr1:149908777-149908857 1.0000 80 chr2:209435768-209435848 1.0000 80 chr1:15240999-15241079 1.0000 80 chr17:56411170-56411250 1.0000 80 chr19:1669280-1669360 1.0000 80 chr7:73509333-73509413 1.0000 80 chr1:201708878-201708958 1.0000 80 chr22:30798235-30798315 1.0000 80 chr1:223521900-223521980 1.0000 80 chr17:36862743-36862823 1.0000 80 chr4:25052178-25052258 1.0000 80 chr20:304648-304728 1.0000 80 chr17:37774865-37774945 1.0000 80 chr1:155973109-155973189 1.0000 80 chr1:112162173-112162253 1.0000 80 chr17:55335760-55335840 1.0000 80 chr12:10876047-10876127 1.0000 80 chr1:842244-842324 1.0000 80 chr9:95898641-95898721 1.0000 80 chr15:89438807-89438887 1.0000 80 chr6:119097980-119098060 1.0000 80 chr22:38713557-38713637 1.0000 80 chr7:143106084-143106164 1.0000 80 chr1:12135320-12135400 1.0000 80 chr9:131184225-131184305 1.0000 80 chr20:43271222-43271302 1.0000 80 chrX:71615287-71615367 1.0000 80 chr19:17758950-17759030 1.0000 80 chr12:56139234-56139314 1.0000 80 chr19:3365874-3365954 1.0000 80 chr13:99740270-99740350 1.0000 80 chr10:97320826-97320906 1.0000 80 chrX:135067437-135067517 1.0000 80 chr15:76005294-76005374 1.0000 80 chr7:139967190-139967270 1.0000 80 chr2:43157550-43157630 1.0000 80 chr11:122526288-12252636 1.0000 80 chr3:182435216-182435296 1.0000 80 chr16:22307818-22307898 1.0000 80 chr3:50305071-50305151 1.0000 80 chr6:26071394-26071474 1.0000 80 chr21:25259282-25259362 1.0000 80 chr9:124505715-124505795 1.0000 80 chr10:61668409-61668489 1.0000 80 chr14:75127090-75127170 1.0000 80 chr2:132589656-132589736 1.0000 80 chr6:101841396-101841476 1.0000 80 chr12:132312767-13231284 1.0000 80 chr1:185288110-185288190 1.0000 80 chr1:84767190-84767270 1.0000 80 chr3:150087839-150087919 1.0000 80 chr7:23397435-23397515 1.0000 80 chr11:8698159-8698239 1.0000 80 chr1:166810397-166810477 1.0000 80 chr1:147071362-147071442 1.0000 80 chr11:65354247-65354327 1.0000 80 chr4:48199874-48199954 1.0000 80 chr7:29878992-29879072 1.0000 80 chr1:42384610-42384690 1.0000 80 chr11:71752205-71752285 1.0000 80 chr10:5404988-5405068 1.0000 80 chr6:139446200-139446280 1.0000 80 chr2:210866972-210867052 1.0000 80 chr2:242211432-242211512 1.0000 80 chr2:202122663-202122743 1.0000 80 chr20:61546524-61546604 1.0000 80 chr19:46437974-46438054 1.0000 80 chr1:156470193-156470273 1.0000 80 chr4:127711883-127711963 1.0000 80 chr8:130710607-130710687 1.0000 80 chr13:97794981-97795061 1.0000 80 chr1:39670874-39670954 1.0000 80 chr15:44583323-44583403 1.0000 80 chr17:42634041-42634121 1.0000 80 chr8:61967117-61967197 1.0000 80 chr9:130647959-130648039 1.0000 80 chr19:50372367-50372447 1.0000 80 chr3:184054381-184054461 1.0000 80 chr7:7051606-7051686 1.0000 80 chr1:40421497-40421577 1.0000 80 chr7:101191013-101191093 1.0000 80 chr1:26354401-26354481 1.0000 80 chr1:118157082-118157162 1.0000 80 chr12:679632-679712 1.0000 80 chr19:17797407-17797487 1.0000 80 chr6:68073174-68073254 1.0000 80 chr10:104227912-10422799 1.0000 80 chr8:74658237-74658317 1.0000 80 chr12:125052320-12505240 1.0000 80 chr1:155950081-155950161 1.0000 80 chr6:155496038-155496118 1.0000 80 chr7:97740612-97740692 1.0000 80 chr1:39438841-39438921 1.0000 80 chr3:156386088-156386168 1.0000 80 chr1:52025054-52025134 1.0000 80 chr8:23134228-23134308 1.0000 80 chr20:49600642-49600722 1.0000 80 chr1:227942216-227942296 1.0000 80 chr7:6146367-6146447 1.0000 80 chr11:33891676-33891756 1.0000 80 chr19:4232756-4232836 1.0000 80 chr3:127457079-127457159 1.0000 80 chrX:109646105-109646185 1.0000 80 chr15:49057318-49057398 1.0000 80 chr22:38564163-38564243 1.0000 80 chr14:56584713-56584793 1.0000 80 chr3:23244154-23244234 1.0000 80 chr14:23760653-23760733 1.0000 80 chr17:35182550-35182630 1.0000 80 chr8:95460846-95460926 1.0000 80 chr1:221888901-221888981 1.0000 80 chr1:156473346-156473426 1.0000 80 chr4:151942985-151943065 1.0000 80 chr19:39343029-39343109 1.0000 80 chr3:170281798-170281878 1.0000 80 chr1:33004905-33004985 1.0000 80 chr4:48742630-48742710 1.0000 80 chr6:30458469-30458549 1.0000 80 chr2:201524210-201524290 1.0000 80 chr11:48076375-48076455 1.0000 80 chr7:104591776-104591856 1.0000 80 chr20:4054801-4054881 1.0000 80 chr13:113952558-11395263 1.0000 80 chr5:112040366-112040446 1.0000 80 chr22:29874199-29874279 1.0000 80 chr7:134427529-134427609 1.0000 80 chr12:122244644-12224472 1.0000 80 chr9:136599451-136599531 1.0000 80 chr8:67830053-67830133 1.0000 80 chr3:195636710-195636790 1.0000 80 chr15:34955398-34955478 1.0000 80 chr3:193398305-193398385 1.0000 80 chr9:74977028-74977108 1.0000 80 chr3:48672300-48672380 1.0000 80 chr22:38679775-38679855 1.0000 80 chr19:17830163-17830243 1.0000 80 chr3:194397343-194397423 1.0000 80 chr12:76942397-76942477 1.0000 80 chr19:44031443-44031523 1.0000 80 chr4:175458937-175459017 1.0000 80 chr1:15772346-15772426 1.0000 80 chr18:45936195-45936275 1.0000 80 chr5:32469585-32469665 1.0000 80 chr17:38474237-38474317 1.0000 80 chr6:106545899-106545979 1.0000 80 chr8:131654187-131654267 1.0000 80 chr20:1451494-1451574 1.0000 80 chr19:39452817-39452897 1.0000 80 chr1:156471285-156471365 1.0000 80 chr1:22598476-22598556 1.0000 80 chr20:33412401-33412481 1.0000 80 chr5:34538388-34538468 1.0000 80 chr13:41238766-41238846 1.0000 80 chr6:13733455-13733535 1.0000 80 chr3:129900665-129900745 1.0000 80 chr12:77718515-77718595 1.0000 80 chr17:42634270-42634350 1.0000 80 chr8:23034581-23034661 1.0000 80 chr17:5726751-5726831 1.0000 80 chr17:48133211-48133291 1.0000 80 chr3:66551768-66551848 1.0000 80 chr17:25684977-25685057 1.0000 80 chrX:24072276-24072356 1.0000 80 chr13:42338003-42338083 1.0000 80 chr1:234760754-234760834 1.0000 80 chr18:32557079-32557159 1.0000 80 chr3:171489244-171489324 1.0000 80 chr1:7613232-7613312 1.0000 80 chr3:105722937-105723017 1.0000 80 chr1:18929112-18929192 1.0000 80 chr1:230320952-230321032 1.0000 80 chr12:58146663-58146743 1.0000 80 chr7:155250012-155250092 1.0000 80 chr15:78609841-78609921 1.0000 80 chr11:125322407-12532248 1.0000 80 chr5:10369004-10369084 1.0000 80 chr17:7255462-7255542 1.0000 80 chr3:77241017-77241097 1.0000 80 chr3:87676562-87676642 1.0000 80 chr5:42854913-42854993 1.0000 80 chr6:134293622-134293702 1.0000 80 chrX:67653402-67653482 1.0000 80 chr20:62175266-62175346 1.0000 80 chr12:49182945-49183025 1.0000 80 chr19:29030829-29030909 1.0000 80 chr5:112033037-112033117 1.0000 80 chr12:80330676-80330756 1.0000 80 chr11:120081572-12008165 1.0000 80 chr12:118628377-11862845 1.0000 80 chr5:172234985-172235065 1.0000 80 chr16:87972292-87972372 1.0000 80 chr3:171093649-171093729 1.0000 80 chr6:105406730-105406810 1.0000 80 chr19:17593833-17593913 1.0000 80 chr17:75442220-75442300 1.0000 80 chr11:71711068-71711148 1.0000 80 chr9:117416024-117416104 1.0000 80 chr10:86054138-86054218 1.0000 80 chr2:144777634-144777714 1.0000 80 chr14:100071005-10007108 1.0000 80 chr14:35162346-35162426 1.0000 80 chr4:175112168-175112248 1.0000 80 chr1:146697244-146697324 1.0000 80 chr12:53893584-53893664 1.0000 80 chr11:64567514-64567594 1.0000 80 chr19:47220627-47220707 1.0000 80 chr17:75602997-75603077 1.0000 80 chr11:59522647-59522727 1.0000 80 chr21:30906539-30906619 1.0000 80 chr8:102016094-102016174 1.0000 80 chr6:20092344-20092424 1.0000 80 chr7:142583595-142583675 1.0000 80 chr19:42817333-42817413 1.0000 80 chr11:45507074-45507154 1.0000 80 chr11:18405182-18405262 1.0000 80 chr20:30318430-30318510 1.0000 80 chr12:7342062-7342142 1.0000 80 chr19:47909855-47909935 1.0000 80 chr8:42775573-42775653 1.0000 80 chr1:117855153-117855233 1.0000 80 chr4:89680352-89680432 1.0000 80 chr3:177075719-177075799 1.0000 80 chr10:70377686-70377766 1.0000 80 chr15:78112612-78112692 1.0000 80 chr1:157293122-157293202 1.0000 80 chr11:3535769-3535849 1.0000 80 chr17:27916857-27916937 1.0000 80 chr3:179170192-179170272 1.0000 80 chrX:49028928-49029008 1.0000 80 chr17:7345845-7345925 1.0000 80 chr1:153585620-153585700 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZFP91/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZFP91.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.249 C 0.246 G 0.259 T 0.246 Background letter frequencies (from file dataset with add-one prior applied): A 0.249 C 0.246 G 0.259 T 0.246 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTTWAAGR MEME-1 width = 8 sites = 143 llr = 1133 E-value = 1.4e-130 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTWAAGR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::6aa23 pos.-specific C 7::::::1 probability G ::::::85 matrix T 2aa4:::1 bits 2.0 * ** 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** *** Entropy 1.0 ******* (11.4 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTAAAGG consensus T T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTWAAGR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:89680352-89680432 5 1.54e-05 TTTT CTTAAAGG AGTATGGCTC chr6:134293622-134293702 5 1.54e-05 tttt cttaaagg gccagagagt chr3:66551768-66551848 1 1.54e-05 . CTTAAAGG AGACACGCAG chr22:38679775-38679855 20 1.54e-05 gGTTTGCCTT CTTAAAGG GGCAGTGCTC chr3:48672300-48672380 5 1.54e-05 TCTT CTTAAAGG GCTCCCTCCC chr3:193398305-193398385 8 1.54e-05 TTGCAGT CTTAAAGG AACAGAAGGG chr5:112040366-112040446 39 1.54e-05 cggtcatctt cttaaagg gacagtagtc chr6:30458469-30458549 4 1.54e-05 TCT CTTAAAGG GCCAGACCTC chr11:33891676-33891756 17 1.54e-05 GACTTGGCTT CTTAAAGG GGCCAGTGTC chr1:155950081-155950161 7 1.54e-05 TAGAAT CTTAAAGG GCCACACTCC chr1:26354401-26354481 14 1.54e-05 gagaagggat cttaaagg cacagaggAT chr1:40421497-40421577 22 1.54e-05 GAGCTCTGCT CTTAAAGG AGCCGCGTCC chr1:39670874-39670954 18 1.54e-05 AGTTGCTTTC CTTAAAGG GCCAGTACGT chr2:242211432-242211512 3 1.54e-05 GG CTTAAAGG GACAGCAACC chr11:65354247-65354327 60 1.54e-05 CTCTTTAAAT CTTAAAGG GGAGGTGCCC chr2:132589656-132589736 36 1.54e-05 AGGGGCTGTA CTTAAAGG GGCCACACCC chr10:61668409-61668489 9 1.54e-05 CTGGTTTT CTTAAAGG GCCCAAGTCA chr16:22307818-22307898 9 1.54e-05 aatcacct cttaaagg gcccaccaca chr3:182435216-182435296 31 1.54e-05 agcctgactc cttaaagg ggaacacacc chr15:76005294-76005374 9 1.54e-05 TCAACCTT CTTAAAGG GCCCGTGCGG chr15:89438807-89438887 28 1.54e-05 AGACCAGCCC CTTAAAGG AACACGCGCA chr17:37774865-37774945 12 1.54e-05 CGGAGAGGCT CTTAAAGG GCCAGTGGCG chr22:30798235-30798315 11 1.54e-05 TAGTAGCCTT CTTAAAGG GCCAGTTGCA chr7:73509333-73509413 6 1.54e-05 ATCCT CTTAAAGG GACAGTGTCC chr1:15240999-15241079 46 1.54e-05 CACTTTAAGC CTTAAAGG GACAGGCCTG chr1:149908777-149908857 23 1.54e-05 TGCCCAACCC CTTAAAGG AGAATACACA chr11:46848508-46848588 3 1.54e-05 AG CTTAAAGG GGCCGCAGTG chr6:97285428-97285508 3 1.54e-05 CT CTTAAAGG CGCCGGCCCC chr1:157293122-157293202 67 4.55e-05 agagctacct ctttaagg taggtg chr19:47220627-47220707 51 4.55e-05 GCCACTGGCC CTTTAAGG AGGGGAGCCC chr4:175112168-175112248 46 4.55e-05 atgtgtatag ctttaagg ggacatttga chr10:86054138-86054218 44 4.55e-05 gaggtgggca ctttaagg gatgattatg chr3:171093649-171093729 24 4.55e-05 CAAAACGCCT CTTAAAGA CACAGCCGTT chr11:120081572-12008165 52 4.55e-05 GCCGCGGGCC CTTTAAGG GCCGCGAGGT chr5:42854913-42854993 44 4.55e-05 GGAAGTGTCC CTTTAAGG ATCTGAACTT chr6:13733455-13733535 53 4.55e-05 AACGTGGCTC CTTTAAGG GGCGGCCGCA chr12:122244644-12224472 5 4.55e-05 CTCT CTTAAAGA GACCGCAGCA chr7:134427529-134427609 71 4.55e-05 TGTTCTGTTT CTTTAAGG TT chr22:38564163-38564243 5 4.55e-05 gttc cttaaaga cacaggacat chrX:109646105-109646185 70 4.55e-05 GGGTGTTCCC CTTTAAGG GAG chr7:6146367-6146447 10 4.55e-05 ttttttttt cttaaaga gacagggtct chr6:155496038-155496118 51 4.55e-05 GGGCCTGCAC CTTTAAGG CAGCATCTGT chr19:50372367-50372447 63 4.55e-05 GACGAGGGCC CTTTAAGG CACCTGTGGA chr8:61967117-61967197 30 4.55e-05 ATGGCAGCGT CTTAAAGA TACTTGGTGC chr17:42634041-42634121 43 4.55e-05 TTAAGAGTCT CTTAAAGA GACAGGATCC chr6:139446200-139446280 46 4.55e-05 CAAACTGTCC CTTTAAGG TATCTGTATC chr7:23397435-23397515 19 4.55e-05 TAAGTTCTGT CTTAAAGA TACAGCCGTA chr2:43157550-43157630 22 4.55e-05 AGGCCAGTCT CTTAAAGA GACAGTATGT chr11:3535769-3535849 46 6.01e-05 attgctgtag ctttaaga tcgagggagg chr19:47909855-47909935 63 6.01e-05 GGTGCTGGCC CTTTAAGA AAAAGTGGAG chr20:30318430-30318510 56 6.01e-05 gagactctgc ctttaaga aaaaaaaaaa chr19:29030829-29030909 64 6.01e-05 aatactgccc ctttaaga ataaaaaag chrX:24072276-24072356 42 6.01e-05 GGATCTGCTT CTTTAAGA AAAAAAAAAA chr3:129900665-129900745 69 6.01e-05 attactgtag ctttaaga ttga chr15:34955398-34955478 73 6.01e-05 tggggtatgg ctttaaga chr8:67830053-67830133 66 6.01e-05 gctaatatct ctttaaga tcctgct chr7:104591776-104591856 67 6.01e-05 GTCCCTGTCT CTTTAAGA GTGCTT chr9:130647959-130648039 41 6.01e-05 AGGCCTGGCC CTTTAAGA GCCAAGCTAA chr4:127711883-127711963 44 6.01e-05 tctcctgttc ctttaaga tccagcacag chr14:75127090-75127170 70 6.01e-05 gtgcctggcC CTTTAAGA TAT chr9:124505715-124505795 44 6.01e-05 GGACCTGTAC CTTTAAGA CCCCAGCAGG chr11:122526288-12252636 53 6.01e-05 AGCGCGGCCG CTTTAAGA GAGGGGCGGG chr1:155973109-155973189 70 6.01e-05 TTGTCGGTCC CTTTAAGA GGC chr17:36862743-36862823 68 6.01e-05 CTCACTGGCC CTTTAAGA AATCC chr17:56411170-56411250 57 6.01e-05 GGCGATACTC CTTTAAGA GACCACCGCT chr11:119019646-11901972 72 6.01e-05 ggcgcgggcc cTTTAAGA A chr2:132439927-132440007 69 6.01e-05 GCCGCGGTCC CTTTAAGA GGGG chr9:117416024-117416104 11 7.55e-05 aagaaaaata tttaaagg gccagctcca chr18:45936195-45936275 3 7.55e-05 GA TTTAAAGG GACAGCCCCG chr12:76942397-76942477 5 7.55e-05 AGCA TTTAAAGG GCCCATACAT chr20:4054801-4054881 68 7.55e-05 GCACTGGCCC TTTAAAGG GGAAG chr11:48076375-48076455 6 7.55e-05 ttttt tttaaagg gccagtcccc chr1:156473346-156473426 1 7.55e-05 . TTTAAAGG GCCAGGAGCA chr1:227942216-227942296 9 7.55e-05 ccatatca TTTAAAGG GACCACGCCC chr8:130710607-130710687 47 7.55e-05 TACCCACTGA TTTAAAGG GCCAGGTCCC chr19:46437974-46438054 54 7.55e-05 GGACCCGCCT TTTAAAGG GACAAAGCCA chr20:61546524-61546604 4 7.55e-05 CCT TTTAAAGG GACAGTGACA chr2:210866972-210867052 2 7.55e-05 T TTTAAAGG GCCAGCATAG chr11:71752205-71752285 2 7.55e-05 C TTTAAAGG CACAGCAAGC chr11:8698159-8698239 28 7.55e-05 AAATGGTTAA TTTAAAGG CACAGCCACA chr17:55335760-55335840 21 7.55e-05 GACAGCCCCA TTTAAAGG GACAGTGCCT chr4:25052178-25052258 7 7.55e-05 agttta tttaaagg gacagtactc chr19:1669280-1669360 7 7.55e-05 CATGAT TTTAAAGG TGCAGTAGCT chr2:209435768-209435848 1 7.55e-05 . TTTAAAGG GACAGTACAC chr12:123129640-12312972 1 7.55e-05 . TTTAAAGG GACCACGCTC chr12:53613580-53613660 19 7.55e-05 GGCCCCCACG TTTAAAGG GCCAGTACCT chr3:179170192-179170272 9 1.35e-04 TCAAACAA TTTAAAGA AACAGCCCTG chr10:70377686-70377766 5 1.35e-04 tttt tttaaaga gacagtgtct chr12:80330676-80330756 20 1.35e-04 TGTGGTAGCT CTTAAAGT GCCCTTGCAG chr3:105722937-105723017 38 1.35e-04 CCCAAGAGAT CTTAAAAG CAGTAGATTC chr17:42634270-42634350 63 1.35e-04 GGGGCAAGGG TTTAAAGA GTCCCCACCC chr5:32469585-32469665 6 1.35e-04 agcta tttaaaga gacagagctg chr4:175458937-175459017 34 1.35e-04 gttttttttt tttaaaga gacagtgtct chr4:151942985-151943065 10 1.35e-04 CTCCATCCC CTTAAAGT GGTAGGTTTC chr14:23760653-23760733 8 1.35e-04 taagatc tttaaaga ggtaactgtg chr20:49600642-49600722 29 1.35e-04 CCATGttttt tttaaaga gacagcctgt chr1:156470193-156470273 49 1.35e-04 GAGGGGGCCT CTTAAAGT GGCAGGCGCA chr1:42384610-42384690 7 1.35e-04 TAACCT TTTAAAGA CACAGTACAC chr4:48199874-48199954 52 1.35e-04 cgaagcttcc cttaaaag caccatttag chr7:139967190-139967270 54 1.35e-04 taattgtctc tttaaaga ccttatctct chr1:12135320-12135400 1 1.35e-04 . tttaaaga gacagggtct chr17:75442220-75442300 3 2.08e-04 gg cttaaagc aacagaggct chr12:58146663-58146743 63 2.08e-04 GTCACTGGCC CTTTAAAG TAGTGGTACG chr15:49057318-49057398 64 2.08e-04 TACACTGGCC CTTTAAgt gaggggtgg chr3:156386088-156386168 7 2.08e-04 TGAGCT CTTAAAGC AGTAGTGcct chr1:185288110-185288190 4 2.08e-04 TTT CTTAAAGC TACAGTGTGC chr8:42775573-42775653 55 2.36e-04 AGTGCTGTCC CTTTAAGC AAatttactg chr11:18405182-18405262 64 2.36e-04 GACGCTGTAG CTTTAAAA GCTGGGGTG chr5:172234985-172235065 62 2.36e-04 gaccctgtct ctttaaaa aaaaaaaaaa chr5:10369004-10369084 64 2.36e-04 ggctctgttt ctttaaaa aaaaaaaaa chr11:125322407-12532248 69 2.36e-04 GGGAATGTCT CTTTAAAA GTAA chr8:95460846-95460926 73 2.36e-04 tggaatgtta ctttaaaa chr3:127457079-127457159 64 2.36e-04 gattctgtct ctttaaaa aaaaaaaaa chr1:52025054-52025134 32 2.36e-04 CTCTCTGTCT CTTTAAAA Tacagacaca chr8:74658237-74658317 67 2.36e-04 CCAACTACCC CTTTAAGC CGAGCC chr7:29878992-29879072 66 2.36e-04 gaaagtgtct ctttaaaa tggatca chr1:842244-842324 24 2.36e-04 GTCGCTTCCC CTTTAAGC ACACTCATTC chr8:131654187-131654267 11 2.66e-04 GTACAATGAA TTTAAAGT GACAGTACAC chr12:118628377-11862845 6 3.38e-04 TTAGA TTTAAAGC GACAGGCGTA chr7:97740612-97740692 8 3.38e-04 ATATAAT TTTAAAAA GACACTGTCA chr3:177075719-177075799 65 4.09e-04 GATGCTTCCC CTTTAAAT TAACCAGT chr1:146697244-146697324 60 4.09e-04 ACTCCAAATG CTTAAATG AACACCTACC chr3:87676562-87676642 61 4.09e-04 ACTGTGGTCC CTTTAAAt gacacagaaa chr3:77241017-77241097 70 4.09e-04 AACACTTTCC CTTTAAAT GTA chr13:42338003-42338083 65 4.09e-04 TGCTGTGTCT CTTTAAAT GCTGGAGT chr12:77718515-77718595 73 4.09e-04 GCGCCTGTCT CTTTAAAT chr19:39452817-39452897 59 4.09e-04 gagtttggcc ctttaaat cttcttcctt chr9:74977028-74977108 72 4.09e-04 GACACTGTCT CTTTAAAT A chr21:25259282-25259362 61 4.09e-04 AGCGTGGTCC CTTTAAAt gatatggaag chr1:223521900-223521980 29 4.25e-04 GAAGGGTTAA ATTAAAGG GACAGCTCTG chr1:56975928-56976008 10 4.25e-04 TCACCTCAC ATTAAAGG GCCAGGCACC chr1:230320952-230321032 47 4.67e-04 tgctgtgtct ctttaaac tgtgcgtgcg chr3:170281798-170281878 64 4.67e-04 GTCACTACCC CTTTAAAC CCATGTGTG chr2:202122663-202122743 65 4.67e-04 GCATCTGTTC CTTTAAAC AGGAAACA chr14:103034495-10303457 15 4.67e-04 atgttctgat ctttaatg tctggctccc chr1:153585620-153585700 19 5.14e-04 TTGGGCCCTT GTTAAAGG GATACACACC chr6:106545899-106545979 3 5.14e-04 GT GTTAAAGG GACAGAGTTC chr11:45507074-45507154 72 5.28e-04 AGGACTGGCC CTTTAATA A chr19:17830163-17830243 10 6.04e-04 CTCCACGAC CTCAAAGG GCCTGTAAGT chr12:7342062-7342142 59 6.92e-04 AAGACCCGCT CTCTAAGG TGCTCTTCCC chr20:304648-304728 56 8.09e-04 ATCTCAGCTT CTGAAAGG CGGAGGGACC chr4:1966439-1966519 60 8.09e-04 ggagccagac attaaaag actaggaaat chrX:71615287-71615367 34 8.50e-04 ACAGCTGTCC CTTTAATT TAACCCTTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTWAAGR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:89680352-89680432 1.5e-05 4_[+1]_68 chr6:134293622-134293702 1.5e-05 4_[+1]_68 chr3:66551768-66551848 1.5e-05 [+1]_72 chr22:38679775-38679855 1.5e-05 19_[+1]_53 chr3:48672300-48672380 1.5e-05 4_[+1]_68 chr3:193398305-193398385 1.5e-05 7_[+1]_65 chr5:112040366-112040446 1.5e-05 38_[+1]_34 chr6:30458469-30458549 1.5e-05 3_[+1]_69 chr11:33891676-33891756 1.5e-05 16_[+1]_56 chr1:155950081-155950161 1.5e-05 6_[+1]_66 chr1:26354401-26354481 1.5e-05 13_[+1]_59 chr1:40421497-40421577 1.5e-05 21_[+1]_51 chr1:39670874-39670954 1.5e-05 17_[+1]_55 chr2:242211432-242211512 1.5e-05 2_[+1]_70 chr11:65354247-65354327 1.5e-05 59_[+1]_13 chr2:132589656-132589736 1.5e-05 35_[+1]_37 chr10:61668409-61668489 1.5e-05 8_[+1]_64 chr16:22307818-22307898 1.5e-05 8_[+1]_64 chr3:182435216-182435296 1.5e-05 30_[+1]_42 chr15:76005294-76005374 1.5e-05 8_[+1]_64 chr15:89438807-89438887 1.5e-05 27_[+1]_45 chr17:37774865-37774945 1.5e-05 11_[+1]_61 chr22:30798235-30798315 1.5e-05 10_[+1]_62 chr7:73509333-73509413 1.5e-05 5_[+1]_67 chr1:15240999-15241079 1.5e-05 45_[+1]_27 chr1:149908777-149908857 1.5e-05 22_[+1]_50 chr11:46848508-46848588 1.5e-05 2_[+1]_70 chr6:97285428-97285508 1.5e-05 2_[+1]_70 chr1:157293122-157293202 4.5e-05 66_[+1]_6 chr19:47220627-47220707 4.5e-05 50_[+1]_22 chr4:175112168-175112248 4.5e-05 45_[+1]_27 chr10:86054138-86054218 4.5e-05 43_[+1]_29 chr3:171093649-171093729 4.5e-05 23_[+1]_49 chr11:120081572-12008165 4.5e-05 51_[+1]_21 chr5:42854913-42854993 4.5e-05 43_[+1]_29 chr6:13733455-13733535 4.5e-05 52_[+1]_20 chr12:122244644-12224472 4.5e-05 4_[+1]_68 chr7:134427529-134427609 4.5e-05 70_[+1]_2 chr22:38564163-38564243 4.5e-05 4_[+1]_68 chrX:109646105-109646185 4.5e-05 69_[+1]_3 chr7:6146367-6146447 4.5e-05 9_[+1]_63 chr6:155496038-155496118 4.5e-05 50_[+1]_22 chr19:50372367-50372447 4.5e-05 62_[+1]_10 chr8:61967117-61967197 4.5e-05 29_[+1]_43 chr17:42634041-42634121 4.5e-05 42_[+1]_30 chr6:139446200-139446280 4.5e-05 45_[+1]_27 chr7:23397435-23397515 4.5e-05 18_[+1]_54 chr2:43157550-43157630 4.5e-05 21_[+1]_51 chr11:3535769-3535849 6e-05 45_[+1]_27 chr19:47909855-47909935 6e-05 62_[+1]_10 chr20:30318430-30318510 6e-05 55_[+1]_17 chr19:29030829-29030909 6e-05 63_[+1]_9 chrX:24072276-24072356 6e-05 41_[+1]_31 chr3:129900665-129900745 6e-05 68_[+1]_4 chr15:34955398-34955478 6e-05 72_[+1] chr8:67830053-67830133 6e-05 65_[+1]_7 chr7:104591776-104591856 6e-05 66_[+1]_6 chr9:130647959-130648039 6e-05 40_[+1]_32 chr4:127711883-127711963 6e-05 43_[+1]_29 chr14:75127090-75127170 6e-05 69_[+1]_3 chr9:124505715-124505795 6e-05 43_[+1]_29 chr11:122526288-12252636 6e-05 52_[+1]_20 chr1:155973109-155973189 6e-05 69_[+1]_3 chr17:36862743-36862823 6e-05 67_[+1]_5 chr17:56411170-56411250 6e-05 56_[+1]_16 chr11:119019646-11901972 6e-05 71_[+1]_1 chr2:132439927-132440007 6e-05 68_[+1]_4 chr9:117416024-117416104 7.6e-05 10_[+1]_62 chr18:45936195-45936275 7.6e-05 2_[+1]_70 chr12:76942397-76942477 7.6e-05 4_[+1]_68 chr20:4054801-4054881 7.6e-05 67_[+1]_5 chr11:48076375-48076455 7.6e-05 5_[+1]_67 chr1:156473346-156473426 7.6e-05 [+1]_72 chr1:227942216-227942296 7.6e-05 8_[+1]_64 chr8:130710607-130710687 7.6e-05 46_[+1]_26 chr19:46437974-46438054 7.6e-05 53_[+1]_19 chr20:61546524-61546604 7.6e-05 3_[+1]_69 chr2:210866972-210867052 7.6e-05 1_[+1]_71 chr11:71752205-71752285 7.6e-05 1_[+1]_71 chr11:8698159-8698239 7.6e-05 27_[+1]_45 chr17:55335760-55335840 7.6e-05 20_[+1]_52 chr4:25052178-25052258 7.6e-05 6_[+1]_66 chr19:1669280-1669360 7.6e-05 6_[+1]_66 chr2:209435768-209435848 7.6e-05 [+1]_72 chr12:123129640-12312972 7.6e-05 [+1]_72 chr12:53613580-53613660 7.6e-05 18_[+1]_54 chr3:179170192-179170272 0.00014 8_[+1]_64 chr10:70377686-70377766 0.00014 4_[+1]_68 chr12:80330676-80330756 0.00014 19_[+1]_53 chr3:105722937-105723017 0.00014 37_[+1]_35 chr17:42634270-42634350 0.00014 62_[+1]_10 chr5:32469585-32469665 0.00014 5_[+1]_67 chr4:175458937-175459017 0.00014 33_[+1]_39 chr4:151942985-151943065 0.00014 9_[+1]_63 chr14:23760653-23760733 0.00014 7_[+1]_65 chr20:49600642-49600722 0.00014 28_[+1]_44 chr1:156470193-156470273 0.00014 48_[+1]_24 chr1:42384610-42384690 0.00014 6_[+1]_66 chr4:48199874-48199954 0.00014 51_[+1]_21 chr7:139967190-139967270 0.00014 53_[+1]_19 chr1:12135320-12135400 0.00014 [+1]_72 chr17:75442220-75442300 0.00021 2_[+1]_70 chr12:58146663-58146743 0.00021 62_[+1]_10 chr15:49057318-49057398 0.00021 63_[+1]_9 chr3:156386088-156386168 0.00021 6_[+1]_66 chr1:185288110-185288190 0.00021 3_[+1]_69 chr8:42775573-42775653 0.00024 54_[+1]_18 chr11:18405182-18405262 0.00024 63_[+1]_9 chr5:172234985-172235065 0.00024 61_[+1]_11 chr5:10369004-10369084 0.00024 63_[+1]_9 chr11:125322407-12532248 0.00024 68_[+1]_4 chr8:95460846-95460926 0.00024 72_[+1] chr3:127457079-127457159 0.00024 63_[+1]_9 chr1:52025054-52025134 0.00024 31_[+1]_41 chr8:74658237-74658317 0.00024 66_[+1]_6 chr7:29878992-29879072 0.00024 65_[+1]_7 chr1:842244-842324 0.00024 23_[+1]_49 chr8:131654187-131654267 0.00027 10_[+1]_62 chr12:118628377-11862845 0.00034 5_[+1]_67 chr7:97740612-97740692 0.00034 7_[+1]_65 chr3:177075719-177075799 0.00041 64_[+1]_8 chr1:146697244-146697324 0.00041 59_[+1]_13 chr3:87676562-87676642 0.00041 60_[+1]_12 chr3:77241017-77241097 0.00041 69_[+1]_3 chr13:42338003-42338083 0.00041 64_[+1]_8 chr12:77718515-77718595 0.00041 72_[+1] chr19:39452817-39452897 0.00041 58_[+1]_14 chr9:74977028-74977108 0.00041 71_[+1]_1 chr21:25259282-25259362 0.00041 60_[+1]_12 chr1:223521900-223521980 0.00042 28_[+1]_44 chr1:56975928-56976008 0.00042 9_[+1]_63 chr1:230320952-230321032 0.00047 46_[+1]_26 chr3:170281798-170281878 0.00047 63_[+1]_9 chr2:202122663-202122743 0.00047 64_[+1]_8 chr14:103034495-10303457 0.00047 14_[+1]_58 chr1:153585620-153585700 0.00051 18_[+1]_54 chr6:106545899-106545979 0.00051 2_[+1]_70 chr11:45507074-45507154 0.00053 71_[+1]_1 chr19:17830163-17830243 0.0006 9_[+1]_63 chr12:7342062-7342142 0.00069 58_[+1]_14 chr20:304648-304728 0.00081 55_[+1]_17 chr4:1966439-1966519 0.00081 59_[+1]_13 chrX:71615287-71615367 0.00085 33_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTWAAGR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTWAAGR width=8 seqs=143 chr4:89680352-89680432 ( 5) CTTAAAGG 1 chr6:134293622-134293702 ( 5) CTTAAAGG 1 chr3:66551768-66551848 ( 1) CTTAAAGG 1 chr22:38679775-38679855 ( 20) CTTAAAGG 1 chr3:48672300-48672380 ( 5) CTTAAAGG 1 chr3:193398305-193398385 ( 8) CTTAAAGG 1 chr5:112040366-112040446 ( 39) CTTAAAGG 1 chr6:30458469-30458549 ( 4) CTTAAAGG 1 chr11:33891676-33891756 ( 17) CTTAAAGG 1 chr1:155950081-155950161 ( 7) CTTAAAGG 1 chr1:26354401-26354481 ( 14) CTTAAAGG 1 chr1:40421497-40421577 ( 22) CTTAAAGG 1 chr1:39670874-39670954 ( 18) CTTAAAGG 1 chr2:242211432-242211512 ( 3) CTTAAAGG 1 chr11:65354247-65354327 ( 60) CTTAAAGG 1 chr2:132589656-132589736 ( 36) CTTAAAGG 1 chr10:61668409-61668489 ( 9) CTTAAAGG 1 chr16:22307818-22307898 ( 9) CTTAAAGG 1 chr3:182435216-182435296 ( 31) CTTAAAGG 1 chr15:76005294-76005374 ( 9) CTTAAAGG 1 chr15:89438807-89438887 ( 28) CTTAAAGG 1 chr17:37774865-37774945 ( 12) CTTAAAGG 1 chr22:30798235-30798315 ( 11) CTTAAAGG 1 chr7:73509333-73509413 ( 6) CTTAAAGG 1 chr1:15240999-15241079 ( 46) CTTAAAGG 1 chr1:149908777-149908857 ( 23) CTTAAAGG 1 chr11:46848508-46848588 ( 3) CTTAAAGG 1 chr6:97285428-97285508 ( 3) CTTAAAGG 1 chr1:157293122-157293202 ( 67) CTTTAAGG 1 chr19:47220627-47220707 ( 51) CTTTAAGG 1 chr4:175112168-175112248 ( 46) CTTTAAGG 1 chr10:86054138-86054218 ( 44) CTTTAAGG 1 chr3:171093649-171093729 ( 24) CTTAAAGA 1 chr11:120081572-12008165 ( 52) CTTTAAGG 1 chr5:42854913-42854993 ( 44) CTTTAAGG 1 chr6:13733455-13733535 ( 53) CTTTAAGG 1 chr12:122244644-12224472 ( 5) CTTAAAGA 1 chr7:134427529-134427609 ( 71) CTTTAAGG 1 chr22:38564163-38564243 ( 5) CTTAAAGA 1 chrX:109646105-109646185 ( 70) CTTTAAGG 1 chr7:6146367-6146447 ( 10) CTTAAAGA 1 chr6:155496038-155496118 ( 51) CTTTAAGG 1 chr19:50372367-50372447 ( 63) CTTTAAGG 1 chr8:61967117-61967197 ( 30) CTTAAAGA 1 chr17:42634041-42634121 ( 43) CTTAAAGA 1 chr6:139446200-139446280 ( 46) CTTTAAGG 1 chr7:23397435-23397515 ( 19) CTTAAAGA 1 chr2:43157550-43157630 ( 22) CTTAAAGA 1 chr11:3535769-3535849 ( 46) CTTTAAGA 1 chr19:47909855-47909935 ( 63) CTTTAAGA 1 chr20:30318430-30318510 ( 56) CTTTAAGA 1 chr19:29030829-29030909 ( 64) CTTTAAGA 1 chrX:24072276-24072356 ( 42) CTTTAAGA 1 chr3:129900665-129900745 ( 69) CTTTAAGA 1 chr15:34955398-34955478 ( 73) CTTTAAGA 1 chr8:67830053-67830133 ( 66) CTTTAAGA 1 chr7:104591776-104591856 ( 67) CTTTAAGA 1 chr9:130647959-130648039 ( 41) CTTTAAGA 1 chr4:127711883-127711963 ( 44) CTTTAAGA 1 chr14:75127090-75127170 ( 70) CTTTAAGA 1 chr9:124505715-124505795 ( 44) CTTTAAGA 1 chr11:122526288-12252636 ( 53) CTTTAAGA 1 chr1:155973109-155973189 ( 70) CTTTAAGA 1 chr17:36862743-36862823 ( 68) CTTTAAGA 1 chr17:56411170-56411250 ( 57) CTTTAAGA 1 chr11:119019646-11901972 ( 72) CTTTAAGA 1 chr2:132439927-132440007 ( 69) CTTTAAGA 1 chr9:117416024-117416104 ( 11) TTTAAAGG 1 chr18:45936195-45936275 ( 3) TTTAAAGG 1 chr12:76942397-76942477 ( 5) TTTAAAGG 1 chr20:4054801-4054881 ( 68) TTTAAAGG 1 chr11:48076375-48076455 ( 6) TTTAAAGG 1 chr1:156473346-156473426 ( 1) TTTAAAGG 1 chr1:227942216-227942296 ( 9) TTTAAAGG 1 chr8:130710607-130710687 ( 47) TTTAAAGG 1 chr19:46437974-46438054 ( 54) TTTAAAGG 1 chr20:61546524-61546604 ( 4) TTTAAAGG 1 chr2:210866972-210867052 ( 2) TTTAAAGG 1 chr11:71752205-71752285 ( 2) TTTAAAGG 1 chr11:8698159-8698239 ( 28) TTTAAAGG 1 chr17:55335760-55335840 ( 21) TTTAAAGG 1 chr4:25052178-25052258 ( 7) TTTAAAGG 1 chr19:1669280-1669360 ( 7) TTTAAAGG 1 chr2:209435768-209435848 ( 1) TTTAAAGG 1 chr12:123129640-12312972 ( 1) TTTAAAGG 1 chr12:53613580-53613660 ( 19) TTTAAAGG 1 chr3:179170192-179170272 ( 9) TTTAAAGA 1 chr10:70377686-70377766 ( 5) TTTAAAGA 1 chr12:80330676-80330756 ( 20) CTTAAAGT 1 chr3:105722937-105723017 ( 38) CTTAAAAG 1 chr17:42634270-42634350 ( 63) TTTAAAGA 1 chr5:32469585-32469665 ( 6) TTTAAAGA 1 chr4:175458937-175459017 ( 34) TTTAAAGA 1 chr4:151942985-151943065 ( 10) CTTAAAGT 1 chr14:23760653-23760733 ( 8) TTTAAAGA 1 chr20:49600642-49600722 ( 29) TTTAAAGA 1 chr1:156470193-156470273 ( 49) CTTAAAGT 1 chr1:42384610-42384690 ( 7) TTTAAAGA 1 chr4:48199874-48199954 ( 52) CTTAAAAG 1 chr7:139967190-139967270 ( 54) TTTAAAGA 1 chr1:12135320-12135400 ( 1) TTTAAAGA 1 chr17:75442220-75442300 ( 3) CTTAAAGC 1 chr12:58146663-58146743 ( 63) CTTTAAAG 1 chr15:49057318-49057398 ( 64) CTTTAAGT 1 chr3:156386088-156386168 ( 7) CTTAAAGC 1 chr1:185288110-185288190 ( 4) CTTAAAGC 1 chr8:42775573-42775653 ( 55) CTTTAAGC 1 chr11:18405182-18405262 ( 64) CTTTAAAA 1 chr5:172234985-172235065 ( 62) CTTTAAAA 1 chr5:10369004-10369084 ( 64) CTTTAAAA 1 chr11:125322407-12532248 ( 69) CTTTAAAA 1 chr8:95460846-95460926 ( 73) CTTTAAAA 1 chr3:127457079-127457159 ( 64) CTTTAAAA 1 chr1:52025054-52025134 ( 32) CTTTAAAA 1 chr8:74658237-74658317 ( 67) CTTTAAGC 1 chr7:29878992-29879072 ( 66) CTTTAAAA 1 chr1:842244-842324 ( 24) CTTTAAGC 1 chr8:131654187-131654267 ( 11) TTTAAAGT 1 chr12:118628377-11862845 ( 6) TTTAAAGC 1 chr7:97740612-97740692 ( 8) TTTAAAAA 1 chr3:177075719-177075799 ( 65) CTTTAAAT 1 chr1:146697244-146697324 ( 60) CTTAAATG 1 chr3:87676562-87676642 ( 61) CTTTAAAT 1 chr3:77241017-77241097 ( 70) CTTTAAAT 1 chr13:42338003-42338083 ( 65) CTTTAAAT 1 chr12:77718515-77718595 ( 73) CTTTAAAT 1 chr19:39452817-39452897 ( 59) CTTTAAAT 1 chr9:74977028-74977108 ( 72) CTTTAAAT 1 chr21:25259282-25259362 ( 61) CTTTAAAT 1 chr1:223521900-223521980 ( 29) ATTAAAGG 1 chr1:56975928-56976008 ( 10) ATTAAAGG 1 chr1:230320952-230321032 ( 47) CTTTAAAC 1 chr3:170281798-170281878 ( 64) CTTTAAAC 1 chr2:202122663-202122743 ( 65) CTTTAAAC 1 chr14:103034495-10303457 ( 15) CTTTAATG 1 chr1:153585620-153585700 ( 19) GTTAAAGG 1 chr6:106545899-106545979 ( 3) GTTAAAGG 1 chr11:45507074-45507154 ( 72) CTTTAATA 1 chr19:17830163-17830243 ( 10) CTCAAAGG 1 chr12:7342062-7342142 ( 59) CTCTAAGG 1 chr20:304648-304728 ( 56) CTGAAAGG 1 chr4:1966439-1966519 ( 60) ATTAAAAG 1 chrX:71615287-71615367 ( 34) CTTTAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTWAAGR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.11179 E= 1.4e-130 -357 159 -421 -14 -1380 -1380 -1380 202 -1380 -414 -521 199 124 -1380 -1380 75 201 -1380 -1380 -1380 201 -1380 -1380 -1380 -57 -1380 164 -314 40 -182 96 -133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTWAAGR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 143 E= 1.4e-130 0.020979 0.741259 0.013986 0.223776 0.000000 0.000000 0.000000 1.000000 0.000000 0.013986 0.006993 0.979021 0.587413 0.000000 0.000000 0.412587 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.167832 0.000000 0.804196 0.027972 0.328671 0.069930 0.503497 0.097902 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTWAAGR MEME-1 regular expression -------------------------------------------------------------------------------- [CT]TT[AT]AAG[GA] -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCCWSCC MEME-2 width = 8 sites = 51 llr = 409 E-value = 1.1e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCCWSCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::4::: pos.-specific C a6a9:5a9 probability G :::::3:: matrix T :4:162:1 bits 2.0 * * 1.8 * * * 1.6 * * ** 1.4 * ** ** Relative 1.2 * ** ** Entropy 1.0 ***** ** (11.6 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCTCCC consensus T AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWSCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:27916857-27916937 42 1.34e-05 CCCTCACAGC CCCCTCCC CTTCACTTTC chr19:42817333-42817413 19 1.34e-05 GATGAACGTC CCCCTCCC ACGCGGAGAA chr14:100071005-10007108 29 1.34e-05 GCAGTCGAGC CCCCTCCC CGGCCCGCGT chr12:49182945-49183025 14 1.34e-05 CATCCCCCTC CCCCTCCC CAGAAGTGGG chr3:48672300-48672380 70 1.34e-05 TGATCATTGG CCCCTCCC TGT chr12:123129640-12312972 21 1.34e-05 CCACGCTCTT CCCCTCCC AGCACTCCCA chr11:63686884-63686964 8 1.34e-05 ACAGCAC CCCCTCCC TGCCGCCCCG chr1:117855153-117855233 5 2.68e-05 gaag ctcctccc cagtgcagta chr22:38679775-38679855 35 2.68e-05 AGGGGCAGTG CTCCTCCC ACAGCTTCAG chr3:195636710-195636790 14 2.68e-05 CCTCCCCCGG CTCCTCCC CCAGCCTCCG chr11:120081572-12008165 8 4.09e-05 TCCCCGC CCCCTGCC CGGCCAACGC chr19:50372367-50372447 31 4.09e-05 AGAGTGAGGG CCCCTGCC CCCCACCTTG chr19:3365874-3365954 27 4.09e-05 GGACCCGCAG CCCCTGCC TGGCTCTGGG chr15:78112612-78112692 1 5.45e-05 . CCCCACCC GGGGGCCCCG chr17:42634270-42634350 73 5.45e-05 TTTAAAGAGT CCCCACCC chr19:17758950-17759030 71 5.45e-05 CAGCTTCTTT CCCCACCC CT chr18:32557079-32557159 61 6.86e-05 GCTGCGCCTC CTCCTGCC GCTGAGGTCT chr14:75127090-75127170 10 6.86e-05 caagtgacc ctcctgcc ttgcagtgtt chr19:47909855-47909935 1 9.56e-05 . CCCCTTCC TACACCAGGG chr7:142583595-142583675 54 9.56e-05 CCAATTCTTT CTCCACCC AGGGCTCTCT chr1:156470193-156470273 10 9.56e-05 TAGACCACC CTCCACCC CAACCCCTGG chr9:131184225-131184305 49 9.56e-05 GTTATGGGGG CCCCTTCC CCAGGAGAGG chr1:112162173-112162253 59 9.56e-05 AAACTCCCCG CCCCTTCC CGGTAGCTCC chr22:29702849-29702929 57 9.56e-05 GAGACCCCAG CTCCACCC CAGCTCCCGC chr17:75442220-75442300 19 1.09e-04 gcaacagagg ctccttcc tttacagtgc chrX:67653402-67653482 44 1.09e-04 AGCGCTCTGG CTCCTTCC TCAACTGTTT chr20:33412401-33412481 20 1.09e-04 TAAAGGTTCT CTCCTTCC TTGCCAACCA chr1:118157082-118157162 58 1.09e-04 TGTTCCAGCT CTCCTTCC TGGGCTGGCC chr3:23244154-23244234 61 1.23e-04 AACCCCTAAC CCCCAGCC GGCGTTTCCC chr19:17797407-17797487 61 1.23e-04 CTTCCACCAC CCCCAGCC CCGTCCAGCA chr22:38713557-38713637 19 1.23e-04 AGACGCAGTT CCCCAGCC TCAGTGCAGG chr5:172234985-172235065 29 1.38e-04 caccactgca ctccagcc tgaatgacag chr5:10369004-10369084 22 1.38e-04 tgccattgca ctccagcc ttgatggcct chr3:127457079-127457159 31 1.38e-04 caccactgca ctccagcc tgggtgacag chr1:155950081-155950161 21 1.38e-04 AAGGGCCACA CTCCAGCC TGGGTACCCA chr1:153585620-153585700 56 1.51e-04 ACCCCTCTAC CCCCATCC CAGAGGGAGT chr14:70078015-70078095 54 1.51e-04 GGTGCCACCG CCCCATCC ACTCCAGCGC chr4:151942985-151943065 1 1.65e-04 . CTCCATCC CCTTAAAGTG chr17:5726751-5726831 20 1.78e-04 CCGTGCTCTT CCCTTCCC AGCACTTCCC chr1:227942216-227942296 24 1.78e-04 AGGGACCACG CCCTTCCC TTTCCAGCAC chr10:104227912-10422799 21 1.78e-04 TCTGGCACTT CCCTTCCC GTCTTCCTTA chr12:7342062-7342142 69 1.92e-04 CTCTAAGGTG CTCTTCCC CTTT chr3:171093649-171093729 5 2.05e-04 GACA CCCCTCCT CCAAAACGCC chr7:73509333-73509413 44 2.05e-04 CTGCTGAACT CCCCTCCT CAACCCCAGT chr12:53613580-53613660 57 2.18e-04 GGGCCAGAAG CTCCTCCT TGCACCTCAG chr13:97794981-97795061 9 2.46e-04 TAAAGGGA CCCTACCC AAGGAATTGT chr11:122526288-12252636 15 2.60e-04 GCGACTACAG CTCTTGCC CGCACGGAGC chr22:38669158-38669238 22 2.60e-04 GACCCGGGTT CTCTTGCC ACTCACAAAA chr12:122244644-12224472 26 3.01e-04 CGCAGCACCT CCCCTGCT CTGGAATCAG chr3:143204180-143204260 39 3.69e-04 ttttcttttt ctccacct tcgattttct chr11:59522647-59522727 22 5.08e-04 GGTGCAGGGG CCTCTCCC CGGACTCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWSCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:27916857-27916937 1.3e-05 41_[+2]_31 chr19:42817333-42817413 1.3e-05 18_[+2]_54 chr14:100071005-10007108 1.3e-05 28_[+2]_44 chr12:49182945-49183025 1.3e-05 13_[+2]_59 chr3:48672300-48672380 1.3e-05 69_[+2]_3 chr12:123129640-12312972 1.3e-05 20_[+2]_52 chr11:63686884-63686964 1.3e-05 7_[+2]_65 chr1:117855153-117855233 2.7e-05 4_[+2]_68 chr22:38679775-38679855 2.7e-05 34_[+2]_38 chr3:195636710-195636790 2.7e-05 13_[+2]_59 chr11:120081572-12008165 4.1e-05 7_[+2]_65 chr19:50372367-50372447 4.1e-05 30_[+2]_42 chr19:3365874-3365954 4.1e-05 26_[+2]_46 chr15:78112612-78112692 5.5e-05 [+2]_72 chr17:42634270-42634350 5.5e-05 72_[+2] chr19:17758950-17759030 5.5e-05 70_[+2]_2 chr18:32557079-32557159 6.9e-05 60_[+2]_12 chr14:75127090-75127170 6.9e-05 9_[+2]_63 chr19:47909855-47909935 9.6e-05 [+2]_72 chr7:142583595-142583675 9.6e-05 53_[+2]_19 chr1:156470193-156470273 9.6e-05 9_[+2]_63 chr9:131184225-131184305 9.6e-05 48_[+2]_24 chr1:112162173-112162253 9.6e-05 58_[+2]_14 chr22:29702849-29702929 9.6e-05 56_[+2]_16 chr17:75442220-75442300 0.00011 18_[+2]_54 chrX:67653402-67653482 0.00011 43_[+2]_29 chr20:33412401-33412481 0.00011 19_[+2]_53 chr1:118157082-118157162 0.00011 57_[+2]_15 chr3:23244154-23244234 0.00012 60_[+2]_12 chr19:17797407-17797487 0.00012 60_[+2]_12 chr22:38713557-38713637 0.00012 18_[+2]_54 chr5:172234985-172235065 0.00014 28_[+2]_44 chr5:10369004-10369084 0.00014 21_[+2]_51 chr3:127457079-127457159 0.00014 30_[+2]_42 chr1:155950081-155950161 0.00014 20_[+2]_52 chr1:153585620-153585700 0.00015 55_[+2]_17 chr14:70078015-70078095 0.00015 53_[+2]_19 chr4:151942985-151943065 0.00016 [+2]_72 chr17:5726751-5726831 0.00018 19_[+2]_53 chr1:227942216-227942296 0.00018 23_[+2]_49 chr10:104227912-10422799 0.00018 20_[+2]_52 chr12:7342062-7342142 0.00019 68_[+2]_4 chr3:171093649-171093729 0.00021 4_[+2]_68 chr7:73509333-73509413 0.00021 43_[+2]_29 chr12:53613580-53613660 0.00022 56_[+2]_16 chr13:97794981-97795061 0.00025 8_[+2]_64 chr11:122526288-12252636 0.00026 14_[+2]_58 chr22:38669158-38669238 0.00026 21_[+2]_51 chr12:122244644-12224472 0.0003 25_[+2]_47 chr3:143204180-143204260 0.00037 38_[+2]_34 chr11:59522647-59522727 0.00051 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWSCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCCWSCC width=8 seqs=51 chr17:27916857-27916937 ( 42) CCCCTCCC 1 chr19:42817333-42817413 ( 19) CCCCTCCC 1 chr14:100071005-10007108 ( 29) CCCCTCCC 1 chr12:49182945-49183025 ( 14) CCCCTCCC 1 chr3:48672300-48672380 ( 70) CCCCTCCC 1 chr12:123129640-12312972 ( 21) CCCCTCCC 1 chr11:63686884-63686964 ( 8) CCCCTCCC 1 chr1:117855153-117855233 ( 5) CTCCTCCC 1 chr22:38679775-38679855 ( 35) CTCCTCCC 1 chr3:195636710-195636790 ( 14) CTCCTCCC 1 chr11:120081572-12008165 ( 8) CCCCTGCC 1 chr19:50372367-50372447 ( 31) CCCCTGCC 1 chr19:3365874-3365954 ( 27) CCCCTGCC 1 chr15:78112612-78112692 ( 1) CCCCACCC 1 chr17:42634270-42634350 ( 73) CCCCACCC 1 chr19:17758950-17759030 ( 71) CCCCACCC 1 chr18:32557079-32557159 ( 61) CTCCTGCC 1 chr14:75127090-75127170 ( 10) CTCCTGCC 1 chr19:47909855-47909935 ( 1) CCCCTTCC 1 chr7:142583595-142583675 ( 54) CTCCACCC 1 chr1:156470193-156470273 ( 10) CTCCACCC 1 chr9:131184225-131184305 ( 49) CCCCTTCC 1 chr1:112162173-112162253 ( 59) CCCCTTCC 1 chr22:29702849-29702929 ( 57) CTCCACCC 1 chr17:75442220-75442300 ( 19) CTCCTTCC 1 chrX:67653402-67653482 ( 44) CTCCTTCC 1 chr20:33412401-33412481 ( 20) CTCCTTCC 1 chr1:118157082-118157162 ( 58) CTCCTTCC 1 chr3:23244154-23244234 ( 61) CCCCAGCC 1 chr19:17797407-17797487 ( 61) CCCCAGCC 1 chr22:38713557-38713637 ( 19) CCCCAGCC 1 chr5:172234985-172235065 ( 29) CTCCAGCC 1 chr5:10369004-10369084 ( 22) CTCCAGCC 1 chr3:127457079-127457159 ( 31) CTCCAGCC 1 chr1:155950081-155950161 ( 21) CTCCAGCC 1 chr1:153585620-153585700 ( 56) CCCCATCC 1 chr14:70078015-70078095 ( 54) CCCCATCC 1 chr4:151942985-151943065 ( 1) CTCCATCC 1 chr17:5726751-5726831 ( 20) CCCTTCCC 1 chr1:227942216-227942296 ( 24) CCCTTCCC 1 chr10:104227912-10422799 ( 21) CCCTTCCC 1 chr12:7342062-7342142 ( 69) CTCTTCCC 1 chr3:171093649-171093729 ( 5) CCCCTCCT 1 chr7:73509333-73509413 ( 44) CCCCTCCT 1 chr12:53613580-53613660 ( 57) CTCCTCCT 1 chr13:97794981-97795061 ( 9) CCCTACCC 1 chr11:122526288-12252636 ( 15) CTCTTGCC 1 chr22:38669158-38669238 ( 22) CTCTTGCC 1 chr12:122244644-12224472 ( 26) CCCCTGCT 1 chr3:143204180-143204260 ( 39) CTCCACCT 1 chr11:59522647-59522727 ( 22) CCTCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWSCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.63023 E= 1.1e-010 -1232 202 -1232 -1232 -1232 121 -1232 81 -1232 199 -1232 -365 -1232 181 -1232 -84 50 -1232 -1232 140 -1232 105 19 -33 -1232 202 -1232 -1232 -1232 187 -1232 -133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWSCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.1e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.568627 0.000000 0.431373 0.000000 0.980392 0.000000 0.019608 0.000000 0.862745 0.000000 0.137255 0.352941 0.000000 0.000000 0.647059 0.000000 0.509804 0.294118 0.196078 0.000000 1.000000 0.000000 0.000000 0.000000 0.901961 0.000000 0.098039 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCWSCC MEME-2 regular expression -------------------------------------------------------------------------------- C[CT]CC[TA][CG]CC -------------------------------------------------------------------------------- Time 8.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGMRGGG MEME-3 width = 8 sites = 56 llr = 427 E-value = 8.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGMRGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:45:2: pos.-specific C ::14:::: probability G a99:4a8a matrix T :::11::: bits 2.0 * * 1.8 * * * 1.6 * * * * 1.4 *** * * Relative 1.2 *** *** Entropy 1.0 *** *** (11.0 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAAGGG consensus CG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMRGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:78112612-78112692 19 3.72e-05 GGGGGCCCCG GGGAAGGG ACCTCGCTGC chr19:42817333-42817413 70 3.72e-05 TTGGAGGAGG GGGCAGGG AGC chr11:59522647-59522727 65 3.72e-05 TCTCGGGTTA GGGAAGGG GGCTTTGG chr1:33004905-33004985 19 3.72e-05 GTGTGGGCAA GGGCAGGG GGAGTGGGCG chr19:39343029-39343109 39 3.72e-05 GAAAAATTGG GGGCAGGG GGCGCGGGAG chr1:39438841-39438921 55 3.72e-05 TGTTAATGCT GGGAAGGG AAGAGCGTGG chr21:25259282-25259362 40 3.72e-05 CGGAAGTGCT GGGAAGGG AAGAGCGTGG chr6:26071394-26071474 59 3.72e-05 GGAAAGTGCT GGGAAGGG AAGGGCATGG chr3:50305071-50305151 24 3.72e-05 GCCCCAGGGT GGGAAGGG GCCAGAGTGG chr15:76005294-76005374 42 3.72e-05 TTCCTCTCTG GGGCAGGG GTGAGGGGGC chr20:43271222-43271302 29 3.72e-05 AGTGGAGAGG GGGCAGGG AGATTGCAGA chr17:37774865-37774945 32 3.72e-05 CAGTGGCGGC GGGAAGGG GCAGCGGTGG chr14:103034495-10303457 55 3.72e-05 aaagtagtgg gggcaggg cactggccct chr17:48133211-48133291 73 7.59e-05 AGGATGAGGA GGGAGGGG chr8:23034581-23034661 39 7.59e-05 TGTCTCCAAA GGGAGGGG AAGAAGGAGG chr17:42634270-42634350 48 7.59e-05 CGAGGATCGG GGGCGGGG GCAAGGGTTT chr19:44031443-44031523 19 7.59e-05 CTGGGGCAGA GGGCGGGG GACCGCCGAG chr19:17830163-17830243 62 7.59e-05 CGGTGGTTCC GGGCGGGG TCTTCAGCCC chr1:156470193-156470273 37 7.59e-05 GACCGGGTGG GGGAGGGG GCCTCTTAAA chr12:132312767-13231284 61 7.59e-05 ACGGCGGGGC GGGCGGGG GTGGCAGCGT chr11:122526288-12252636 64 7.59e-05 TTTAAGAGAG GGGCGGGG CCCGGGTAC chr11:63686884-63686964 34 7.59e-05 CGGGGCTGCG GGGCGGGG CTGCGCCACC chr22:29702849-29702929 38 7.59e-05 GCCCGATCGC GGGCGGGG GGAGACCCCA chr11:71711068-71711148 21 9.44e-05 TGGGCAGGCG GGGTAGGG TGAGGTCTAT chr12:49182945-49183025 64 9.44e-05 CCTAGCAGCG GGGTAGGG GCGGAGGAG chr14:35162346-35162426 58 1.49e-04 GTGCTGGCAA GGGAAGAG CTTGGTCCCT chr2:144777634-144777714 59 1.49e-04 GTGCTGGAAA GGGAAGAG CATGGTCCCT chr5:34538388-34538468 56 1.49e-04 aataggtgaa gggtgggg accaatcaga chr1:156473346-156473426 38 1.49e-04 AGGGAAAGGA GGGAAGAG CTCAGTGGGT chr11:71752205-71752285 63 1.49e-04 CTCTCAGTGG GGGTGGGG CCCAGAGGGA chr1:147071362-147071442 1 1.49e-04 . GGGAAGAG GAGACCCTCC chr22:38713557-38713637 56 1.49e-04 TTACGCGTGG GGGTGGGG GAGCACACAG chr2:132439927-132440007 7 1.49e-04 TGGGCT GGGCAGAG GCTCAGCCTG chr11:3535769-3535849 58 2.23e-04 ttaagatcga gggaggag gactagagcc chr17:7255462-7255542 28 2.23e-04 CACTTCCTGG GGGCGGAG AGGACCTCAG chr3:66551768-66551848 43 2.23e-04 ACGGGAACGC GGGCTGGG GAAAGGAGGC chr17:5726751-5726831 70 2.23e-04 CCtgggggtg gggaggag atg chr3:48672300-48672380 49 2.23e-04 CGCGTTTGGA GGGCGGAG CCTTGATCAT chr15:34955398-34955478 59 2.23e-04 ccagggatta gggatggg gtatggcttt chr15:89438807-89438887 60 2.23e-04 TCCCTCCCAA GGGCTGGG CTCGAAGGGA chr6:97285428-97285508 58 2.23e-04 aagagaaaga gggaggag gcaagtaaaa chr1:26354401-26354481 4 2.77e-04 agg gagaaggg atcttaaagg chr19:3365874-3365954 47 2.77e-04 GCTCTGGGGG GAGAAGGG AGCCAGGGTG chr1:153585620-153585700 6 3.14e-04 CCCTG GGGTTGGG CCCTTGTTAA chr2:210866972-210867052 51 3.14e-04 CATATGCAAA GGGTGGAG AAACAAAAAG chr6:43806005-43806085 34 3.14e-04 CTTCAGCTGA GGGTTGGG GGCAGCTCCT chr7:155250012-155250092 63 3.51e-04 CCCGCACCCG GAGCGGGG GACGCGGCCG chr9:131184225-131184305 61 3.51e-04 CCTTCCCCAG GAGAGGGG AGGCTGTGCC chr18:32557079-32557159 39 4.22e-04 GTCCCTCCCA GGCCAGGG GCTGGCTGCG chr12:77718515-77718595 40 4.22e-04 TCCTCTCCTG GGCAAGGG CCCAGACCCC chr14:56584713-56584793 49 4.22e-04 CAGGCGGCGA GGGCTGAG GACCCCGCGC chr19:36427135-36427215 65 4.58e-04 TGGGAGGTGG GGCCGGGG CGCGTCTT chr1:146697244-146697324 12 4.94e-04 ACACTTCCTA GTGAAGGG AAAACTGTCA chr1:223521900-223521980 17 4.94e-04 GCCTTGGTGG GTGAAGGG TTAAATTAAA chr6:119097980-119098060 43 7.79e-04 TCAGGAATgt gggaagga ctgaaaagaa chr11:33891676-33891756 37 8.68e-04 CCAGTGTCGG GGACGGGG AGAGCCGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMRGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:78112612-78112692 3.7e-05 18_[+3]_54 chr19:42817333-42817413 3.7e-05 69_[+3]_3 chr11:59522647-59522727 3.7e-05 64_[+3]_8 chr1:33004905-33004985 3.7e-05 18_[+3]_54 chr19:39343029-39343109 3.7e-05 38_[+3]_34 chr1:39438841-39438921 3.7e-05 54_[+3]_18 chr21:25259282-25259362 3.7e-05 39_[+3]_33 chr6:26071394-26071474 3.7e-05 58_[+3]_14 chr3:50305071-50305151 3.7e-05 23_[+3]_49 chr15:76005294-76005374 3.7e-05 41_[+3]_31 chr20:43271222-43271302 3.7e-05 28_[+3]_44 chr17:37774865-37774945 3.7e-05 31_[+3]_41 chr14:103034495-10303457 3.7e-05 54_[+3]_18 chr17:48133211-48133291 7.6e-05 72_[+3] chr8:23034581-23034661 7.6e-05 38_[+3]_34 chr17:42634270-42634350 7.6e-05 47_[+3]_25 chr19:44031443-44031523 7.6e-05 18_[+3]_54 chr19:17830163-17830243 7.6e-05 61_[+3]_11 chr1:156470193-156470273 7.6e-05 36_[+3]_36 chr12:132312767-13231284 7.6e-05 60_[+3]_12 chr11:122526288-12252636 7.6e-05 63_[+3]_9 chr11:63686884-63686964 7.6e-05 33_[+3]_39 chr22:29702849-29702929 7.6e-05 37_[+3]_35 chr11:71711068-71711148 9.4e-05 20_[+3]_52 chr12:49182945-49183025 9.4e-05 63_[+3]_9 chr14:35162346-35162426 0.00015 57_[+3]_15 chr2:144777634-144777714 0.00015 58_[+3]_14 chr5:34538388-34538468 0.00015 55_[+3]_17 chr1:156473346-156473426 0.00015 37_[+3]_35 chr11:71752205-71752285 0.00015 62_[+3]_10 chr1:147071362-147071442 0.00015 [+3]_72 chr22:38713557-38713637 0.00015 55_[+3]_17 chr2:132439927-132440007 0.00015 6_[+3]_66 chr11:3535769-3535849 0.00022 57_[+3]_15 chr17:7255462-7255542 0.00022 27_[+3]_45 chr3:66551768-66551848 0.00022 42_[+3]_30 chr17:5726751-5726831 0.00022 69_[+3]_3 chr3:48672300-48672380 0.00022 48_[+3]_24 chr15:34955398-34955478 0.00022 58_[+3]_14 chr15:89438807-89438887 0.00022 59_[+3]_13 chr6:97285428-97285508 0.00022 57_[+3]_15 chr1:26354401-26354481 0.00028 3_[+3]_69 chr19:3365874-3365954 0.00028 46_[+3]_26 chr1:153585620-153585700 0.00031 5_[+3]_67 chr2:210866972-210867052 0.00031 50_[+3]_22 chr6:43806005-43806085 0.00031 33_[+3]_39 chr7:155250012-155250092 0.00035 62_[+3]_10 chr9:131184225-131184305 0.00035 60_[+3]_12 chr18:32557079-32557159 0.00042 38_[+3]_34 chr12:77718515-77718595 0.00042 39_[+3]_33 chr14:56584713-56584793 0.00042 48_[+3]_24 chr19:36427135-36427215 0.00046 64_[+3]_8 chr1:146697244-146697324 0.00049 11_[+3]_61 chr1:223521900-223521980 0.00049 16_[+3]_56 chr6:119097980-119098060 0.00078 42_[+3]_30 chr11:33891676-33891756 0.00087 36_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMRGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGMRGGG width=8 seqs=56 chr15:78112612-78112692 ( 19) GGGAAGGG 1 chr19:42817333-42817413 ( 70) GGGCAGGG 1 chr11:59522647-59522727 ( 65) GGGAAGGG 1 chr1:33004905-33004985 ( 19) GGGCAGGG 1 chr19:39343029-39343109 ( 39) GGGCAGGG 1 chr1:39438841-39438921 ( 55) GGGAAGGG 1 chr21:25259282-25259362 ( 40) GGGAAGGG 1 chr6:26071394-26071474 ( 59) GGGAAGGG 1 chr3:50305071-50305151 ( 24) GGGAAGGG 1 chr15:76005294-76005374 ( 42) GGGCAGGG 1 chr20:43271222-43271302 ( 29) GGGCAGGG 1 chr17:37774865-37774945 ( 32) GGGAAGGG 1 chr14:103034495-10303457 ( 55) GGGCAGGG 1 chr17:48133211-48133291 ( 73) GGGAGGGG 1 chr8:23034581-23034661 ( 39) GGGAGGGG 1 chr17:42634270-42634350 ( 48) GGGCGGGG 1 chr19:44031443-44031523 ( 19) GGGCGGGG 1 chr19:17830163-17830243 ( 62) GGGCGGGG 1 chr1:156470193-156470273 ( 37) GGGAGGGG 1 chr12:132312767-13231284 ( 61) GGGCGGGG 1 chr11:122526288-12252636 ( 64) GGGCGGGG 1 chr11:63686884-63686964 ( 34) GGGCGGGG 1 chr22:29702849-29702929 ( 38) GGGCGGGG 1 chr11:71711068-71711148 ( 21) GGGTAGGG 1 chr12:49182945-49183025 ( 64) GGGTAGGG 1 chr14:35162346-35162426 ( 58) GGGAAGAG 1 chr2:144777634-144777714 ( 59) GGGAAGAG 1 chr5:34538388-34538468 ( 56) GGGTGGGG 1 chr1:156473346-156473426 ( 38) GGGAAGAG 1 chr11:71752205-71752285 ( 63) GGGTGGGG 1 chr1:147071362-147071442 ( 1) GGGAAGAG 1 chr22:38713557-38713637 ( 56) GGGTGGGG 1 chr2:132439927-132440007 ( 7) GGGCAGAG 1 chr11:3535769-3535849 ( 58) GGGAGGAG 1 chr17:7255462-7255542 ( 28) GGGCGGAG 1 chr3:66551768-66551848 ( 43) GGGCTGGG 1 chr17:5726751-5726831 ( 70) GGGAGGAG 1 chr3:48672300-48672380 ( 49) GGGCGGAG 1 chr15:34955398-34955478 ( 59) GGGATGGG 1 chr15:89438807-89438887 ( 60) GGGCTGGG 1 chr6:97285428-97285508 ( 58) GGGAGGAG 1 chr1:26354401-26354481 ( 4) GAGAAGGG 1 chr19:3365874-3365954 ( 47) GAGAAGGG 1 chr1:153585620-153585700 ( 6) GGGTTGGG 1 chr2:210866972-210867052 ( 51) GGGTGGAG 1 chr6:43806005-43806085 ( 34) GGGTTGGG 1 chr7:155250012-155250092 ( 63) GAGCGGGG 1 chr9:131184225-131184305 ( 61) GAGAGGGG 1 chr18:32557079-32557159 ( 39) GGCCAGGG 1 chr12:77718515-77718595 ( 40) GGCAAGGG 1 chr14:56584713-56584793 ( 49) GGGCTGAG 1 chr19:36427135-36427215 ( 65) GGCCGGGG 1 chr1:146697244-146697324 ( 12) GTGAAGGG 1 chr1:223521900-223521980 ( 17) GTGAAGGG 1 chr6:119097980-119098060 ( 43) GGGAAGGA 1 chr11:33891676-33891756 ( 37) GGACGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMRGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95106 E= 8.7e-007 -1245 -1245 195 -1245 -180 -1245 179 -278 -380 -220 184 -1245 84 74 -1245 -78 95 -1245 67 -120 -1245 -1245 195 -1245 -22 -1245 160 -1245 -380 -1245 192 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMRGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 8.7e-007 0.000000 0.000000 1.000000 0.000000 0.071429 0.000000 0.892857 0.035714 0.017857 0.053571 0.928571 0.000000 0.446429 0.410714 0.000000 0.142857 0.482143 0.000000 0.410714 0.107143 0.000000 0.000000 1.000000 0.000000 0.214286 0.000000 0.785714 0.000000 0.017857 0.000000 0.982143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMRGGG MEME-3 regular expression -------------------------------------------------------------------------------- GGG[AC][AG]G[GA]G -------------------------------------------------------------------------------- Time 12.07 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYTSYTT MEME-4 width = 8 sites = 23 llr = 198 E-value = 6.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTSYTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C ::4:33:: probability G ::::4::: matrix T aa6a17aa bits 2.0 ** * ** 1.8 ** * ** 1.6 ** * ** 1.4 ** * ** Relative 1.2 ** * ** Entropy 1.0 **** *** (12.4 bits) 0.8 **** *** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus C CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTSYTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:58146663-58146743 36 1.41e-05 TGGGTTTTTA TTTTGTTT TTGGTGTCTG chr4:175458937-175459017 13 1.41e-05 gtacacCGGt ttttgttt tttgtttttt chr7:104591776-104591856 41 1.41e-05 TTTTGTTTTG TTTTGTTT TTTTAAGAGT chr9:124505715-124505795 3 2.75e-05 TT TTTTCTTT CCTGTTTCCT chr9:95898641-95898721 39 2.75e-05 TACCtttttt ttttcttt tttttgagat chr3:143204180-143204260 51 2.75e-05 ccaccttcga ttttcttt ttctcctttt chr5:42854913-42854993 19 4.17e-05 TTATGTTGTT TTCTGTTT CTTTAGGGGA chr7:134427529-134427609 63 4.17e-05 CTGAGCAGTG TTCTGTTT CTTTAAGGTT chr14:35162346-35162426 10 5.51e-05 GGAGGTAAA TTCTCTTT CTTCTGTGGT chr4:1966439-1966519 31 5.51e-05 tctttcattt ttctcttt ttcccctttt chr19:36427135-36427215 23 5.51e-05 tATCCAGGGA TTCTCTTT CCCAGCAGCG chr1:185288110-185288190 37 6.92e-05 CTCATTGTAT TTTTGCTT TGTATGGAAT chr17:55335760-55335840 41 6.92e-05 CAGTGCCTTC TTTTGCTT CTGTGCTAGA chrX:67653402-67653482 59 9.62e-05 TCCTCAACTG TTTTCCTT GTACCTTAGA chr1:234760754-234760834 37 9.62e-05 TTCCCTATGT TTTTATTT TATGTGTTTG chr6:106545899-106545979 23 9.62e-05 CAGAGTTCCT TTTTATTT CTGATAACGT chr2:201524210-201524290 51 1.10e-04 GTCTCTGTCT TTCTGCTT CCATATTATG chr1:118157082-118157162 33 1.10e-04 GTTCCAGACT TTCTGCTT TCAGTTTTGT chr8:102016094-102016174 17 1.37e-04 GGGTAGCTGG TTCTATTT AGAGGTCATT chr4:127711883-127711963 6 1.37e-04 agggc ttctcctt acaatttcat chr3:171093649-171093729 55 1.51e-04 TGACAGAATC TTTTACTT GAGGCCACCA chr7:6146367-6146447 2 1.64e-04 t tttttttt cttaaagaga chr12:118628377-11862845 53 2.18e-04 CGTTCACAAA TTCTTCTT CAACTCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTSYTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:58146663-58146743 1.4e-05 35_[+4]_37 chr4:175458937-175459017 1.4e-05 12_[+4]_60 chr7:104591776-104591856 1.4e-05 40_[+4]_32 chr9:124505715-124505795 2.8e-05 2_[+4]_70 chr9:95898641-95898721 2.8e-05 38_[+4]_34 chr3:143204180-143204260 2.8e-05 50_[+4]_22 chr5:42854913-42854993 4.2e-05 18_[+4]_54 chr7:134427529-134427609 4.2e-05 62_[+4]_10 chr14:35162346-35162426 5.5e-05 9_[+4]_63 chr4:1966439-1966519 5.5e-05 30_[+4]_42 chr19:36427135-36427215 5.5e-05 22_[+4]_50 chr1:185288110-185288190 6.9e-05 36_[+4]_36 chr17:55335760-55335840 6.9e-05 40_[+4]_32 chrX:67653402-67653482 9.6e-05 58_[+4]_14 chr1:234760754-234760834 9.6e-05 36_[+4]_36 chr6:106545899-106545979 9.6e-05 22_[+4]_50 chr2:201524210-201524290 0.00011 50_[+4]_22 chr1:118157082-118157162 0.00011 32_[+4]_40 chr8:102016094-102016174 0.00014 16_[+4]_56 chr4:127711883-127711963 0.00014 5_[+4]_67 chr3:171093649-171093729 0.00015 54_[+4]_18 chr7:6146367-6146447 0.00016 1_[+4]_71 chr12:118628377-11862845 0.00022 52_[+4]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTSYTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTSYTT width=8 seqs=23 chr12:58146663-58146743 ( 36) TTTTGTTT 1 chr4:175458937-175459017 ( 13) TTTTGTTT 1 chr7:104591776-104591856 ( 41) TTTTGTTT 1 chr9:124505715-124505795 ( 3) TTTTCTTT 1 chr9:95898641-95898721 ( 39) TTTTCTTT 1 chr3:143204180-143204260 ( 51) TTTTCTTT 1 chr5:42854913-42854993 ( 19) TTCTGTTT 1 chr7:134427529-134427609 ( 63) TTCTGTTT 1 chr14:35162346-35162426 ( 10) TTCTCTTT 1 chr4:1966439-1966519 ( 31) TTCTCTTT 1 chr19:36427135-36427215 ( 23) TTCTCTTT 1 chr1:185288110-185288190 ( 37) TTTTGCTT 1 chr17:55335760-55335840 ( 41) TTTTGCTT 1 chrX:67653402-67653482 ( 59) TTTTCCTT 1 chr1:234760754-234760834 ( 37) TTTTATTT 1 chr6:106545899-106545979 ( 23) TTTTATTT 1 chr2:201524210-201524290 ( 51) TTCTGCTT 1 chr1:118157082-118157162 ( 33) TTCTGCTT 1 chr8:102016094-102016174 ( 17) TTCTATTT 1 chr4:127711883-127711963 ( 6) TTCTCCTT 1 chr3:171093649-171093729 ( 55) TTTTACTT 1 chr7:6146367-6146447 ( 2) TTTTTTTT 1 chr12:118628377-11862845 ( 53) TTCTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTSYTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 6.9e+003 -1117 -1117 -1117 202 -1117 -1117 -1117 202 -1117 82 -1117 120 -1117 -1117 -1117 202 -52 50 60 -150 -1117 50 -1117 141 -1117 -1117 -1117 202 -1117 -1117 -1117 202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTSYTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.9e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.434783 0.000000 0.565217 0.000000 0.000000 0.000000 1.000000 0.173913 0.347826 0.391304 0.086957 0.000000 0.347826 0.000000 0.652174 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTSYTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[TC]T[GC][TC]TT -------------------------------------------------------------------------------- Time 15.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCATTCA MEME-5 width = 8 sites = 13 llr = 128 E-value = 5.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCATTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::9 pos.-specific C 1:9::1a1 probability G ::1:1::: matrix T 9a::99:: bits 2.0 * * * 1.8 * * * 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCATTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:75602997-75603077 67 1.37e-05 cattcattca ttcattca ttcatt chr16:87972292-87972372 73 1.37e-05 cattcactca ttcattca chr12:80330676-80330756 59 1.37e-05 ATCTGAAGAT TTCATTCA GGCAAAAGGA chr1:22598476-22598556 71 1.37e-05 cactaatttc ttcattca ct chr1:15772346-15772426 42 1.37e-05 cattcatgca ttcattca tttattcact chr3:194397343-194397423 63 1.37e-05 cactcattca ttcattca ttcattcatt chr9:136599451-136599531 59 1.37e-05 cactcattca ttcattca ctcattcatt chr7:101191013-101191093 54 1.37e-05 cgttcattca ttcattca tttgtccatt chr1:26354401-26354481 60 8.37e-05 AGTGGTGCAG TTGATTCA GCCTTAACCT chr3:184054381-184054461 53 8.37e-05 GACTCCCCTC TTCAGTCA GTCGGCGAAG chr2:242211432-242211512 73 8.37e-05 TAATGTATTT TTCATCCA chrX:135067437-135067517 5 8.37e-05 GCCT TTCATTCC CGGCAGCGCC chr1:842244-842324 35 8.37e-05 TTTAAGCACA CTCATTCA CCACACCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:75602997-75603077 1.4e-05 66_[+5]_6 chr16:87972292-87972372 1.4e-05 72_[+5] chr12:80330676-80330756 1.4e-05 58_[+5]_14 chr1:22598476-22598556 1.4e-05 70_[+5]_2 chr1:15772346-15772426 1.4e-05 41_[+5]_31 chr3:194397343-194397423 1.4e-05 62_[+5]_10 chr9:136599451-136599531 1.4e-05 58_[+5]_14 chr7:101191013-101191093 1.4e-05 53_[+5]_19 chr1:26354401-26354481 8.4e-05 59_[+5]_13 chr3:184054381-184054461 8.4e-05 52_[+5]_20 chr2:242211432-242211512 8.4e-05 72_[+5] chrX:135067437-135067517 8.4e-05 4_[+5]_68 chr1:842244-842324 8.4e-05 34_[+5]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCATTCA width=8 seqs=13 chr17:75602997-75603077 ( 67) TTCATTCA 1 chr16:87972292-87972372 ( 73) TTCATTCA 1 chr12:80330676-80330756 ( 59) TTCATTCA 1 chr1:22598476-22598556 ( 71) TTCATTCA 1 chr1:15772346-15772426 ( 42) TTCATTCA 1 chr3:194397343-194397423 ( 63) TTCATTCA 1 chr9:136599451-136599531 ( 59) TTCATTCA 1 chr7:101191013-101191093 ( 54) TTCATTCA 1 chr1:26354401-26354481 ( 60) TTGATTCA 1 chr3:184054381-184054461 ( 53) TTCAGTCA 1 chr2:242211432-242211512 ( 73) TTCATCCA 1 chrX:135067437-135067517 ( 5) TTCATTCC 1 chr1:842244-842324 ( 35) CTCATTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 5.8e+003 -1035 -168 -1035 191 -1035 -1035 -1035 202 -1035 190 -175 -1035 200 -1035 -1035 -1035 -1035 -1035 -175 191 -1035 -168 -1035 191 -1035 202 -1035 -1035 189 -168 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.8e+003 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.076923 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.076923 0.000000 0.923077 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-5 regular expression -------------------------------------------------------------------------------- TTCATTCA -------------------------------------------------------------------------------- Time 18.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:6739381-6739461 6.70e-01 80 chr2:132439927-132440007 5.87e-03 68_[+1(6.01e-05)]_4 chr6:97285428-97285508 1.08e-02 2_[+1(1.54e-05)]_70 chr2:241937837-241937917 4.23e-01 80 chr22:29702849-29702929 1.60e-02 37_[+3(7.59e-05)]_11_[+2(9.56e-05)]_\ 16 chr14:70078015-70078095 1.70e-01 80 chr12:53613580-53613660 2.30e-03 18_[+1(7.55e-05)]_54 chr19:36427135-36427215 1.83e-03 22_[+4(5.51e-05)]_50 chr22:38669158-38669238 1.13e-01 80 chr11:46848508-46848588 5.75e-02 2_[+1(1.54e-05)]_70 chr6:43806005-43806085 1.27e-01 80 chr4:1966439-1966519 1.57e-03 30_[+4(5.51e-05)]_42 chr11:63686884-63686964 4.15e-03 7_[+2(1.34e-05)]_18_[+3(7.59e-05)]_\ 39 chr12:123129640-12312972 1.77e-03 [+1(7.55e-05)]_12_[+2(1.34e-05)]_52 chr11:119019646-11901972 1.27e-02 71_[+1(6.01e-05)]_1 chr14:103034495-10303457 1.00e-02 54_[+3(3.72e-05)]_18 chr3:143204180-143204260 3.18e-03 28_[+4(2.75e-05)]_14_[+4(2.75e-05)]_\ 22 chr5:95158521-95158601 3.80e-01 80 chr1:56975928-56976008 1.29e-01 80 chr1:149908777-149908857 9.92e-03 22_[+1(1.54e-05)]_50 chr2:209435768-209435848 2.77e-01 [+1(7.55e-05)]_72 chr1:15240999-15241079 1.79e-02 45_[+1(1.54e-05)]_27 chr17:56411170-56411250 8.07e-03 56_[+1(6.01e-05)]_16 chr19:1669280-1669360 1.27e-02 6_[+1(7.55e-05)]_66 chr7:73509333-73509413 3.21e-03 5_[+1(1.54e-05)]_67 chr1:201708878-201708958 6.84e-01 80 chr22:30798235-30798315 1.37e-02 10_[+1(1.54e-05)]_62 chr1:223521900-223521980 7.27e-02 80 chr17:36862743-36862823 5.37e-02 67_[+1(6.01e-05)]_5 chr4:25052178-25052258 4.71e-02 6_[+1(7.55e-05)]_66 chr20:304648-304728 4.73e-01 80 chr17:37774865-37774945 1.58e-03 11_[+1(1.54e-05)]_12_[+3(3.72e-05)]_\ 41 chr1:155973109-155973189 3.50e-02 69_[+1(6.01e-05)]_3 chr1:112162173-112162253 1.08e-01 58_[+2(9.56e-05)]_14 chr17:55335760-55335840 8.87e-04 20_[+1(7.55e-05)]_12_[+4(6.92e-05)]_\ 32 chr12:10876047-10876127 9.28e-01 80 chr1:842244-842324 3.86e-04 34_[+5(8.37e-05)]_38 chr9:95898641-95898721 5.46e-03 38_[+4(2.75e-05)]_34 chr15:89438807-89438887 1.33e-03 27_[+1(1.54e-05)]_45 chr6:119097980-119098060 7.22e-02 80 chr22:38713557-38713637 2.44e-02 80 chr7:143106084-143106164 9.44e-01 80 chr1:12135320-12135400 1.21e-01 80 chr9:131184225-131184305 3.74e-02 48_[+2(9.56e-05)]_24 chr20:43271222-43271302 7.89e-02 28_[+3(3.72e-05)]_44 chrX:71615287-71615367 7.81e-02 80 chr19:17758950-17759030 7.41e-02 36_[+2(5.45e-05)]_26_[+2(5.45e-05)]_\ 2 chr12:56139234-56139314 2.33e-01 80 chr19:3365874-3365954 2.18e-02 26_[+2(4.09e-05)]_46 chr13:99740270-99740350 4.58e-01 80 chr10:97320826-97320906 6.34e-01 80 chrX:135067437-135067517 4.34e-02 4_[+5(8.37e-05)]_68 chr15:76005294-76005374 8.05e-04 8_[+1(1.54e-05)]_25_[+3(3.72e-05)]_\ 31 chr7:139967190-139967270 3.22e-02 80 chr2:43157550-43157630 4.09e-02 21_[+1(4.55e-05)]_51 chr11:122526288-12252636 1.04e-03 52_[+1(6.01e-05)]_3_[+3(7.59e-05)]_\ 9 chr3:182435216-182435296 9.11e-03 30_[+1(1.54e-05)]_42 chr16:22307818-22307898 1.08e-01 8_[+1(1.54e-05)]_64 chr3:50305071-50305151 1.10e-01 23_[+3(3.72e-05)]_49 chr6:26071394-26071474 4.03e-02 58_[+3(3.72e-05)]_14 chr21:25259282-25259362 1.06e-02 39_[+3(3.72e-05)]_33 chr9:124505715-124505795 3.75e-04 2_[+4(2.75e-05)]_33_[+1(6.01e-05)]_\ 29 chr10:61668409-61668489 2.39e-02 8_[+1(1.54e-05)]_64 chr14:75127090-75127170 1.55e-03 9_[+2(6.86e-05)]_52_[+1(6.01e-05)]_\ 3 chr2:132589656-132589736 7.93e-03 35_[+1(1.54e-05)]_37 chr6:101841396-101841476 7.11e-01 80 chr12:132312767-13231284 6.11e-02 60_[+3(7.59e-05)]_12 chr1:185288110-185288190 1.78e-02 36_[+4(6.92e-05)]_36 chr1:84767190-84767270 3.82e-01 80 chr3:150087839-150087919 7.82e-02 80 chr7:23397435-23397515 3.33e-02 18_[+1(4.55e-05)]_54 chr11:8698159-8698239 2.12e-02 27_[+1(7.55e-05)]_45 chr1:166810397-166810477 3.25e-01 80 chr1:147071362-147071442 1.97e-01 80 chr11:65354247-65354327 1.18e-02 59_[+1(1.54e-05)]_13 chr4:48199874-48199954 6.75e-02 80 chr7:29878992-29879072 8.99e-02 80 chr1:42384610-42384690 1.09e-01 80 chr11:71752205-71752285 1.83e-02 1_[+1(7.55e-05)]_71 chr10:5404988-5405068 9.92e-01 80 chr6:139446200-139446280 1.04e-01 45_[+1(4.55e-05)]_27 chr2:210866972-210867052 5.28e-02 1_[+1(7.55e-05)]_71 chr2:242211432-242211512 6.46e-04 2_[+1(1.54e-05)]_27_[+5(8.37e-05)]_\ 27_[+5(8.37e-05)] chr2:202122663-202122743 4.87e-02 80 chr20:61546524-61546604 1.27e-02 3_[+1(7.55e-05)]_69 chr19:46437974-46438054 1.44e-01 53_[+1(7.55e-05)]_19 chr1:156470193-156470273 1.03e-04 9_[+2(9.56e-05)]_19_[+3(7.59e-05)]_\ 36 chr4:127711883-127711963 2.40e-03 43_[+1(6.01e-05)]_29 chr8:130710607-130710687 7.18e-03 46_[+1(7.55e-05)]_26 chr13:97794981-97795061 2.18e-01 80 chr1:39670874-39670954 5.11e-03 17_[+1(1.54e-05)]_55 chr15:44583323-44583403 3.48e-01 80 chr17:42634041-42634121 1.51e-01 30_[+1(6.01e-05)]_4_[+1(4.55e-05)]_\ 30 chr8:61967117-61967197 5.20e-02 29_[+1(4.55e-05)]_43 chr9:130647959-130648039 5.88e-02 40_[+1(6.01e-05)]_32 chr19:50372367-50372447 1.01e-03 30_[+2(4.09e-05)]_24_[+1(4.55e-05)]_\ 10 chr3:184054381-184054461 5.08e-02 52_[+5(8.37e-05)]_20 chr7:7051606-7051686 8.02e-01 80 chr1:40421497-40421577 1.43e-02 21_[+1(1.54e-05)]_51 chr7:101191013-101191093 4.29e-02 5_[+5(1.37e-05)]_8_[+5(1.37e-05)]_4_\ [+5(1.37e-05)]_4_[+5(1.37e-05)]_[+5(1.37e-05)]_8_[+5(1.37e-05)]_3 chr1:26354401-26354481 2.46e-04 13_[+1(1.54e-05)]_38_[+5(8.37e-05)]_\ 13 chr1:118157082-118157162 4.19e-03 80 chr12:679632-679712 2.96e-01 80 chr19:17797407-17797487 1.61e-02 80 chr6:68073174-68073254 7.06e-02 80 chr10:104227912-10422799 1.35e-01 80 chr8:74658237-74658317 2.48e-02 80 chr12:125052320-12505240 9.12e-01 80 chr1:155950081-155950161 3.50e-03 6_[+1(1.54e-05)]_66 chr6:155496038-155496118 1.19e-02 50_[+1(4.55e-05)]_22 chr7:97740612-97740692 1.42e-01 80 chr1:39438841-39438921 1.09e-01 54_[+3(3.72e-05)]_18 chr3:156386088-156386168 8.13e-02 80 chr1:52025054-52025134 4.18e-02 80 chr8:23134228-23134308 3.71e-01 80 chr20:49600642-49600722 5.39e-03 80 chr1:227942216-227942296 3.60e-03 8_[+1(7.55e-05)]_64 chr7:6146367-6146447 5.00e-03 9_[+1(4.55e-05)]_63 chr11:33891676-33891756 7.84e-04 16_[+1(1.54e-05)]_56 chr19:4232756-4232836 9.67e-01 80 chr3:127457079-127457159 6.88e-03 80 chrX:109646105-109646185 6.38e-03 69_[+1(4.55e-05)]_3 chr15:49057318-49057398 7.02e-02 80 chr22:38564163-38564243 1.73e-01 4_[+1(4.55e-05)]_68 chr14:56584713-56584793 2.45e-01 80 chr3:23244154-23244234 1.74e-02 80 chr14:23760653-23760733 2.93e-01 80 chr17:35182550-35182630 1.00e+00 80 chr8:95460846-95460926 8.78e-02 80 chr1:221888901-221888981 6.22e-01 80 chr1:156473346-156473426 2.88e-02 [+1(7.55e-05)]_72 chr4:151942985-151943065 1.56e-03 80 chr19:39343029-39343109 1.54e-02 38_[+3(3.72e-05)]_34 chr3:170281798-170281878 3.78e-03 80 chr1:33004905-33004985 6.38e-02 18_[+3(3.72e-05)]_54 chr4:48742630-48742710 9.18e-01 80 chr6:30458469-30458549 4.27e-02 3_[+1(1.54e-05)]_69 chr2:201524210-201524290 3.16e-02 80 chr11:48076375-48076455 2.24e-03 5_[+1(7.55e-05)]_67 chr7:104591776-104591856 2.06e-03 30_[+4(1.41e-05)]_2_[+4(1.41e-05)]_\ 18_[+1(6.01e-05)]_6 chr20:4054801-4054881 9.98e-03 67_[+1(7.55e-05)]_5 chr13:113952558-11395263 1.46e-01 80 chr5:112040366-112040446 1.57e-02 38_[+1(1.54e-05)]_34 chr22:29874199-29874279 2.59e-01 80 chr7:134427529-134427609 1.50e-03 62_[+4(4.17e-05)]_[+1(4.55e-05)]_2 chr12:122244644-12224472 3.36e-03 4_[+1(4.55e-05)]_68 chr9:136599451-136599531 1.65e-01 2_[+5(1.37e-05)]_8_[+5(1.37e-05)]_\ [+5(1.37e-05)]_4_[+5(1.37e-05)]_8_[+5(1.37e-05)]_8_[+5(1.37e-05)]_2 chr8:67830053-67830133 2.21e-02 65_[+1(6.01e-05)]_7 chr3:195636710-195636790 1.08e-01 1_[+2(2.68e-05)]_4_[+2(2.68e-05)]_\ 59 chr15:34955398-34955478 2.79e-02 72_[+1(6.01e-05)] chr3:193398305-193398385 3.36e-02 7_[+1(1.54e-05)]_56_[+1(6.01e-05)]_\ 1 chr9:74977028-74977108 5.73e-02 80 chr3:48672300-48672380 5.04e-05 4_[+1(1.54e-05)]_57_[+2(1.34e-05)]_\ 3 chr22:38679775-38679855 7.67e-05 19_[+1(1.54e-05)]_7_[+2(2.68e-05)]_\ 38 chr19:17830163-17830243 9.32e-04 40_[+3(7.59e-05)]_13_[+3(7.59e-05)]_\ 11 chr3:194397343-194397423 1.32e-01 2_[+5(1.37e-05)]_8_[+5(1.37e-05)]_\ 16_[+5(1.37e-05)]_8_[+5(1.37e-05)]_[+5(1.37e-05)]_6 chr12:76942397-76942477 2.23e-02 4_[+1(7.55e-05)]_68 chr19:44031443-44031523 3.88e-01 18_[+3(7.59e-05)]_54 chr4:175458937-175459017 7.10e-03 12_[+4(1.41e-05)]_60 chr1:15772346-15772426 1.26e-01 9_[+5(8.37e-05)]_12_[+5(8.37e-05)]_\ 4_[+5(1.37e-05)]_12_[+5(8.37e-05)]_[+5(8.37e-05)]_3 chr18:45936195-45936275 7.73e-02 2_[+1(7.55e-05)]_70 chr5:32469585-32469665 7.02e-02 80 chr17:38474237-38474317 8.42e-02 80 chr6:106545899-106545979 7.25e-03 22_[+4(9.62e-05)]_50 chr8:131654187-131654267 3.88e-01 80 chr20:1451494-1451574 2.35e-01 80 chr19:39452817-39452897 4.95e-02 80 chr1:156471285-156471365 9.81e-01 80 chr1:22598476-22598556 2.91e-02 7_[+5(1.37e-05)]_55_[+5(1.37e-05)]_\ 2 chr20:33412401-33412481 5.41e-02 80 chr5:34538388-34538468 2.78e-01 80 chr13:41238766-41238846 3.21e-01 80 chr6:13733455-13733535 1.08e-01 52_[+1(4.55e-05)]_20 chr3:129900665-129900745 3.87e-02 68_[+1(6.01e-05)]_4 chr12:77718515-77718595 5.37e-03 80 chr17:42634270-42634350 5.39e-04 47_[+3(7.59e-05)]_17_[+2(5.45e-05)] chr8:23034581-23034661 7.33e-02 38_[+3(7.59e-05)]_34 chr17:5726751-5726831 2.10e-02 80 chr17:48133211-48133291 1.75e-01 54_[+3(9.44e-05)]_10_[+3(7.59e-05)] chr3:66551768-66551848 5.58e-03 [+1(1.54e-05)]_72 chr17:25684977-25685057 6.42e-02 80 chrX:24072276-24072356 5.42e-02 41_[+1(6.01e-05)]_31 chr13:42338003-42338083 3.17e-02 80 chr1:234760754-234760834 4.80e-02 36_[+4(9.62e-05)]_36 chr18:32557079-32557159 4.68e-02 60_[+2(6.86e-05)]_12 chr3:171489244-171489324 6.51e-01 80 chr1:7613232-7613312 9.89e-01 80 chr3:105722937-105723017 1.88e-01 80 chr1:18929112-18929192 9.94e-01 80 chr1:230320952-230321032 1.30e-01 80 chr12:58146663-58146743 4.95e-03 35_[+4(1.41e-05)]_37 chr7:155250012-155250092 3.46e-01 80 chr15:78609841-78609921 6.02e-01 80 chr11:125322407-12532248 5.27e-02 80 chr5:10369004-10369084 1.71e-03 80 chr17:7255462-7255542 2.61e-01 80 chr3:77241017-77241097 1.10e-01 80 chr3:87676562-87676642 1.34e-01 80 chr5:42854913-42854993 7.90e-04 18_[+4(4.17e-05)]_17_[+1(4.55e-05)]_\ 29 chr6:134293622-134293702 3.09e-03 4_[+1(1.54e-05)]_68 chrX:67653402-67653482 5.96e-03 58_[+4(9.62e-05)]_14 chr20:62175266-62175346 9.69e-01 80 chr12:49182945-49183025 6.40e-03 7_[+2(1.34e-05)]_32_[+2(9.56e-05)]_\ 8_[+3(9.44e-05)]_9 chr19:29030829-29030909 8.47e-02 35_[+1(7.55e-05)]_20_[+1(6.01e-05)]_\ 9 chr5:112033037-112033117 5.57e-01 80 chr12:80330676-80330756 1.55e-03 58_[+5(1.37e-05)]_14 chr11:120081572-12008165 1.65e-03 7_[+2(4.09e-05)]_36_[+1(4.55e-05)]_\ 21 chr12:118628377-11862845 3.99e-02 80 chr5:172234985-172235065 8.14e-03 80 chr16:87972292-87972372 1.32e-01 [+5(8.37e-05)]_12_[+5(1.37e-05)]_4_\ [+5(8.37e-05)]_20_[+5(1.37e-05)]_4_[+5(1.37e-05)] chr3:171093649-171093729 4.59e-04 23_[+1(4.55e-05)]_49 chr6:105406730-105406810 6.91e-01 80 chr19:17593833-17593913 7.94e-01 80 chr17:75442220-75442300 1.22e-02 80 chr11:71711068-71711148 9.22e-02 20_[+3(9.44e-05)]_52 chr9:117416024-117416104 9.90e-02 10_[+1(7.55e-05)]_62 chr10:86054138-86054218 3.43e-02 43_[+1(4.55e-05)]_29 chr2:144777634-144777714 2.52e-01 80 chr14:100071005-10007108 7.35e-02 28_[+2(1.34e-05)]_44 chr14:35162346-35162426 1.56e-03 9_[+4(5.51e-05)]_63 chr4:175112168-175112248 5.83e-02 45_[+1(4.55e-05)]_27 chr1:146697244-146697324 4.33e-02 80 chr12:53893584-53893664 2.54e-01 80 chr11:64567514-64567594 1.81e-01 80 chr19:47220627-47220707 5.89e-02 50_[+1(4.55e-05)]_22 chr17:75602997-75603077 2.00e-03 31_[+5(1.37e-05)]_7_[+5(1.37e-05)]_\ [+5(1.37e-05)]_[+5(1.37e-05)]_[+5(1.37e-05)]_2 chr11:59522647-59522727 4.52e-02 64_[+3(3.72e-05)]_8 chr21:30906539-30906619 1.51e-01 80 chr8:102016094-102016174 2.04e-02 80 chr6:20092344-20092424 7.84e-01 80 chr7:142583595-142583675 1.21e-01 53_[+2(9.56e-05)]_19 chr19:42817333-42817413 2.34e-03 18_[+2(1.34e-05)]_43_[+3(3.72e-05)]_\ 3 chr11:45507074-45507154 2.27e-01 80 chr11:18405182-18405262 1.88e-02 80 chr20:30318430-30318510 4.35e-03 55_[+1(6.01e-05)]_17 chr12:7342062-7342142 2.85e-02 80 chr19:47909855-47909935 1.41e-03 [+2(9.56e-05)]_54_[+1(6.01e-05)]_10 chr8:42775573-42775653 1.79e-01 80 chr1:117855153-117855233 1.25e-01 4_[+2(2.68e-05)]_68 chr4:89680352-89680432 1.26e-02 4_[+1(1.54e-05)]_68 chr3:177075719-177075799 2.77e-01 80 chr10:70377686-70377766 1.39e-01 80 chr15:78112612-78112692 1.02e-02 [+2(5.45e-05)]_10_[+3(3.72e-05)]_54 chr1:157293122-157293202 6.79e-02 66_[+1(4.55e-05)]_6 chr11:3535769-3535849 4.76e-03 45_[+1(6.01e-05)]_27 chr17:27916857-27916937 2.68e-03 41_[+2(1.34e-05)]_31 chr3:179170192-179170272 1.50e-01 80 chrX:49028928-49029008 1.44e-02 80 chr17:7345845-7345925 3.88e-01 80 chr1:153585620-153585700 4.35e-03 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************