******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZC3H8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:17007445-17007525 1.0000 80 chr3:32421743-32421823 1.0000 80 chr4:37563065-37563145 1.0000 80 chr1:149606028-149606108 1.0000 80 chr19:1727408-1727488 1.0000 80 chr12:112554083-11255416 1.0000 80 chr16:66913868-66913948 1.0000 80 chr7:130983471-130983551 1.0000 80 chr11:45857695-45857775 1.0000 80 chr15:35840776-35840856 1.0000 80 chr6:14967650-14967730 1.0000 80 chr4:184270584-184270664 1.0000 80 chr21:30928123-30928203 1.0000 80 chrX:52950426-52950506 1.0000 80 chr1:109249397-109249477 1.0000 80 chr17:19091380-19091460 1.0000 80 chr7:158573664-158573744 1.0000 80 chr1:147994344-147994424 1.0000 80 chr1:37791861-37791941 1.0000 80 chr12:66871-66951 1.0000 80 chr8:117614877-117614957 1.0000 80 chr6:6969343-6969423 1.0000 80 chr7:6543458-6543538 1.0000 80 chr18:9014104-9014184 1.0000 80 chr5:95404073-95404153 1.0000 80 chr2:158108595-158108675 1.0000 80 chr1:47800960-47801040 1.0000 80 chr5:95042921-95043001 1.0000 80 chr5:10439992-10440072 1.0000 80 chr17:19015575-19015655 1.0000 80 chr6:126091265-126091345 1.0000 80 chr3:185378348-185378428 1.0000 80 chr17:18967128-18967208 1.0000 80 chr22:22845986-22846066 1.0000 80 chr1:207865797-207865877 1.0000 80 chr12:122150011-12215009 1.0000 80 chr7:97760686-97760766 1.0000 80 chr16:9086216-9086296 1.0000 80 chr5:118753681-118753761 1.0000 80 chr15:102494285-10249436 1.0000 80 chr3:170417602-170417682 1.0000 80 chr1:27190805-27190885 1.0000 80 chr12:15077031-15077111 1.0000 80 chr19:9694550-9694630 1.0000 80 chr11:73491945-73492025 1.0000 80 chr19:1123173-1123253 1.0000 80 chr6:105850301-105850381 1.0000 80 chr12:68900547-68900627 1.0000 80 chr2:68785937-68786017 1.0000 80 chr3:193311452-193311532 1.0000 80 chr3:71922360-71922440 1.0000 80 chr18:778813-778893 1.0000 80 chr6:135514096-135514176 1.0000 80 chr7:128114337-128114417 1.0000 80 chr19:51640235-51640315 1.0000 80 chr6:27302464-27302544 1.0000 80 chr17:45253957-45254037 1.0000 80 chr10:103124622-10312470 1.0000 80 chr3:112360034-112360114 1.0000 80 chr18:808773-808853 1.0000 80 chr1:207779307-207779387 1.0000 80 chr22:30840896-30840976 1.0000 80 chr6:139691043-139691123 1.0000 80 chr1:24137431-24137511 1.0000 80 chrX:55187356-55187436 1.0000 80 chr5:61561633-61561713 1.0000 80 chr5:77074935-77075015 1.0000 80 chr4:38324883-38324963 1.0000 80 chr1:43286893-43286973 1.0000 80 chr2:91738342-91738422 1.0000 80 chr17:10694329-10694409 1.0000 80 chr6:44174371-44174451 1.0000 80 chr22:19912833-19912913 1.0000 80 chrX:52964056-52964136 1.0000 80 chr9:110044732-110044812 1.0000 80 chr2:108972829-108972909 1.0000 80 chr15:51046082-51046162 1.0000 80 chr20:52369773-52369853 1.0000 80 chr6:31587442-31587522 1.0000 80 chr8:21776410-21776490 1.0000 80 chr17:26421202-26421282 1.0000 80 chr19:5434586-5434666 1.0000 80 chr12:25087080-25087160 1.0000 80 chr3:129118885-129118965 1.0000 80 chr15:45019304-45019384 1.0000 80 chr2:68666098-68666178 1.0000 80 chr5:154215156-154215236 1.0000 80 chr15:69168186-69168266 1.0000 80 chr2:183990811-183990891 1.0000 80 chr11:117997307-11799738 1.0000 80 chr2:70475129-70475209 1.0000 80 chr1:47801647-47801727 1.0000 80 chr5:34931161-34931241 1.0000 80 chr1:16839577-16839657 1.0000 80 chr14:23120412-23120492 1.0000 80 chr6:150392423-150392503 1.0000 80 chr10:51546267-51546347 1.0000 80 chr22:29548698-29548778 1.0000 80 chr1:145382308-145382388 1.0000 80 chr14:102151662-10215174 1.0000 80 chr19:7936203-7936283 1.0000 80 chr5:53607834-53607914 1.0000 80 chr8:146012021-146012101 1.0000 80 chr7:100131250-100131330 1.0000 80 chr19:13000811-13000891 1.0000 80 chr4:2239151-2239231 1.0000 80 chr6:31628039-31628119 1.0000 80 chr3:113466088-113466168 1.0000 80 chr12:54752258-54752338 1.0000 80 chr6:28688354-28688434 1.0000 80 chr6:27512400-27512480 1.0000 80 chr22:20106148-20106228 1.0000 80 chr17:35760785-35760865 1.0000 80 chr16:2828411-2828491 1.0000 80 chr6:52348697-52348777 1.0000 80 chr16:9086017-9086097 1.0000 80 chr10:72319202-72319282 1.0000 80 chr9:86535771-86535851 1.0000 80 chr12:56360134-56360214 1.0000 80 chrX:11153533-11153613 1.0000 80 chr22:21158474-21158554 1.0000 80 chr7:2913832-2913912 1.0000 80 chr7:127033099-127033179 1.0000 80 chr22:22799063-22799143 1.0000 80 chr4:3039276-3039356 1.0000 80 chr15:66131848-66131928 1.0000 80 chr1:148241001-148241081 1.0000 80 chr1:27012762-27012842 1.0000 80 chr16:84758949-84759029 1.0000 80 chr11:57226494-57226574 1.0000 80 chr17:57298046-57298126 1.0000 80 chr1:149514157-149514237 1.0000 80 chr11:1372871-1372951 1.0000 80 chr3:14263516-14263596 1.0000 80 chr1:149215110-149215190 1.0000 80 chr6:33408245-33408325 1.0000 80 chr5:132002196-132002276 1.0000 80 chr15:83312949-83313029 1.0000 80 chr6:27780458-27780538 1.0000 80 chr17:62091907-62091987 1.0000 80 chr1:54647477-54647557 1.0000 80 chr12:53765340-53765420 1.0000 80 chr6:32163064-32163144 1.0000 80 chr19:17371895-17371975 1.0000 80 chr6:28756869-28756949 1.0000 80 chr21:43831487-43831567 1.0000 80 chr7:100075975-100076055 1.0000 80 chr16:57716856-57716936 1.0000 80 chr2:149400805-149400885 1.0000 80 chr20:36985063-36985143 1.0000 80 chr19:41344563-41344643 1.0000 80 chr12:58329094-58329174 1.0000 80 chr17:48284256-48284336 1.0000 80 chr1:90461624-90461704 1.0000 80 chr6:139854533-139854613 1.0000 80 chrX:109245675-109245755 1.0000 80 chr7:99277372-99277452 1.0000 80 chr1:27815785-27815865 1.0000 80 chr20:52370556-52370636 1.0000 80 chr6:14039098-14039178 1.0000 80 chr3:195891548-195891628 1.0000 80 chr17:56743903-56743983 1.0000 80 chr8:23081524-23081604 1.0000 80 chr10:25155793-25155873 1.0000 80 chr1:226195345-226195425 1.0000 80 chr4:123654563-123654643 1.0000 80 chr9:100706038-100706118 1.0000 80 chr19:14661955-14662035 1.0000 80 chr6:133118684-133118764 1.0000 80 chr6:32015945-32016025 1.0000 80 chr19:2362706-2362786 1.0000 80 chr19:11495352-11495432 1.0000 80 chr3:152311156-152311236 1.0000 80 chr9:130980648-130980728 1.0000 80 chr6:37391969-37392049 1.0000 80 chr11:3887302-3887382 1.0000 80 chrX:153191271-153191351 1.0000 80 chr10:29112230-29112310 1.0000 80 chr7:75424593-75424673 1.0000 80 chr6:28188566-28188646 1.0000 80 chr11:120107415-12010749 1.0000 80 chr14:51135347-51135427 1.0000 80 chr6:44194637-44194717 1.0000 80 chr2:145116741-145116821 1.0000 80 chr19:6674592-6674672 1.0000 80 chr19:19081694-19081774 1.0000 80 chr15:75052843-75052923 1.0000 80 chr1:115052669-115052749 1.0000 80 chr19:45090937-45091017 1.0000 80 chr19:13973397-13973477 1.0000 80 chr1:142834697-142834777 1.0000 80 chr8:130984911-130984991 1.0000 80 chr7:6432640-6432720 1.0000 80 chr12:77156959-77157039 1.0000 80 chr19:45842051-45842131 1.0000 80 chr7:133896113-133896193 1.0000 80 chr1:148604876-148604956 1.0000 80 chr21:35318816-35318896 1.0000 80 chr3:12798336-12798416 1.0000 80 chr12:54680942-54681022 1.0000 80 chr19:4328489-4328569 1.0000 80 chr1:29064048-29064128 1.0000 80 chr10:46983701-46983781 1.0000 80 chr14:57476780-57476860 1.0000 80 chr7:148659930-148660010 1.0000 80 chr6:26159737-26159817 1.0000 80 chr10:32428683-32428763 1.0000 80 chr19:18489056-18489136 1.0000 80 chr19:11466644-11466724 1.0000 80 chr22:20036087-20036167 1.0000 80 chr22:19465479-19465559 1.0000 80 chr7:150056358-150056438 1.0000 80 chr7:140188797-140188877 1.0000 80 chr16:67194426-67194506 1.0000 80 chr2:26214463-26214543 1.0000 80 chr19:59085284-59085364 1.0000 80 chr1:10533689-10533769 1.0000 80 chr6:27301107-27301187 1.0000 80 chr18:23785465-23785545 1.0000 80 chr8:86972716-86972796 1.0000 80 chr19:41304395-41304475 1.0000 80 chr4:144764491-144764571 1.0000 80 chr11:65627446-65627526 1.0000 80 chr10:23344596-23344676 1.0000 80 chr22:19804142-19804222 1.0000 80 chr1:66004491-66004571 1.0000 80 chr3:13044229-13044309 1.0000 80 chr19:29105869-29105949 1.0000 80 chr12:28458574-28458654 1.0000 80 chr1:236666181-236666261 1.0000 80 chr6:13795322-13795402 1.0000 80 chr7:104873515-104873595 1.0000 80 chr7:148394065-148394145 1.0000 80 chr2:138814954-138815034 1.0000 80 chr4:79785706-79785786 1.0000 80 chr8:125827843-125827923 1.0000 80 chrX:44112530-44112610 1.0000 80 chr11:10476461-10476541 1.0000 80 chr7:102643553-102643633 1.0000 80 chr20:30161439-30161519 1.0000 80 chr6:15300862-15300942 1.0000 80 chr12:53607390-53607470 1.0000 80 chr5:179095569-179095649 1.0000 80 chr21:44297910-44297990 1.0000 80 chr2:152682504-152682584 1.0000 80 chr7:150595758-150595838 1.0000 80 chr17:46088883-46088963 1.0000 80 chr19:4471120-4471200 1.0000 80 chr1:20205106-20205186 1.0000 80 chr18:3617846-3617926 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZC3H8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZC3H8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.233 G 0.238 T 0.256 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.233 G 0.238 T 0.255 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTCTYTT MEME-1 width = 8 sites = 45 llr = 348 E-value = 4.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTYTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:6:433 probability G :::2:::: matrix T a7a2a677 bits 2.1 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 *** * * Entropy 1.1 *** **** (11.2 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTTTT consensus C T CCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTYTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:35318816-35318896 11 1.63e-05 tctttctttc tttctttt tctttctttc chr7:75424593-75424673 55 1.63e-05 tctttctctc tttctttt tctatctttg chr6:37391969-37392049 51 1.63e-05 tacctttttc tttctttt tttttttttg chr19:41344563-41344643 49 1.63e-05 ccttcctttc tttctttt tctttctttc chr16:84758949-84759029 64 1.63e-05 tcttttcttt tttctttt ttgagacgg chr7:97760686-97760766 8 1.63e-05 tcatctc tttctttt ttacattttc chr10:46983701-46983781 25 3.13e-05 gtctatccaa tttctctt ttttaaattg chr10:29112230-29112310 67 3.13e-05 TTAGTCTTTG TTTCTCTT TCTCCA chr2:138814954-138815034 47 4.62e-05 catttctcta tttctttc cttccttcct chr9:100706038-100706118 41 4.62e-05 aatctagctt tttctttc actcattctc chr17:48284256-48284336 28 4.62e-05 ttcctttcct tttctttc ctCGGTCTCT chr5:10439992-10440072 70 4.62e-05 agcctcttca tttctttc ctg chr6:28188566-28188646 26 7.60e-05 taaaacatag tttcttct ttaaatgaaa chrX:153191271-153191351 21 7.60e-05 TGCATCTGGC TCTCTTTT ACCAGCGGCC chr12:54752258-54752338 6 7.60e-05 CCCTC TCTCTTTT CTTTGCTATT chr12:25087080-25087160 32 7.60e-05 acctaagtga tttcttct taactcctat chr2:91738342-91738422 37 7.60e-05 catctcatca tttcttct cgtctcatct chr20:30161439-30161519 32 9.39e-05 gcctggcttt tttttttt tcccctagtt chr4:79785706-79785786 8 9.39e-05 GTCACGT TTTTTTTT TTGGTACCTC chr12:58329094-58329174 33 9.39e-05 atagtgtgta tttttttt ccccaagcat chr6:150392423-150392503 47 9.39e-05 GGTAATTTTT TTTTTTTT TTGCCTTTTT chr19:9694550-9694630 70 9.39e-05 TAAACGACTA TTTTTTTT CCA chr1:142834697-142834777 54 1.11e-04 gagctgccag tttgtttt ccaaagtggc chr6:139854533-139854613 49 1.11e-04 tctgcttggt tttgtttt gctttgtttt chr6:28688354-28688434 11 1.11e-04 ATGTTGTAgt tttgtttt gttttgtttt chr6:44174371-44174451 47 1.11e-04 tttttgtttg tttgtttt ttgcctctat chr6:33408245-33408325 30 1.24e-04 tccccctcca tttctctc tccctAATCT chr1:29064048-29064128 73 1.52e-04 TCCTTTTCCA TTTCTCCT chr3:113466088-113466168 16 1.52e-04 AAGGAGCTCA TTTCTCCT TAACCCCCGC chr6:105850301-105850381 50 1.52e-04 CAGCGGACAC TTTCTCCT ACCACCATAT chr17:19091380-19091460 46 1.52e-04 gaggtagcgt tttctcct gagcgtgaag chr18:778813-778893 43 1.83e-04 GGGCATACAC TTTGTCTT GTAAAAGCAA chr12:15077031-15077111 31 1.83e-04 tcatgtggta tttgtctt tctgtacaag chr14:51135347-51135427 32 2.10e-04 AGGCAGTGAC TCTCTTTC CCCCCAAGAC chr6:14039098-14039178 67 2.40e-04 CTCCAAGGCC TTTTTTTC TTCTTT chr3:12798336-12798416 25 3.44e-04 atacacactc tctctctc acacacacac chr19:11495352-11495432 6 3.44e-04 ctctc tctctctc tctctctctc chr1:115052669-115052749 44 3.71e-04 ATAGTCCTCC TCTCTCCT ATCTGTGAAC chr5:77074935-77075015 25 4.01e-04 tgccccaaat tctttctt gcacgagata chr3:193311452-193311532 15 4.15e-04 CTATTGTCCT TTTGTCTC TGCCCTTTAC chr3:112360034-112360114 66 4.55e-04 CGGGGTAACT TCTCTTCC AGTCTGT chr7:102643553-102643633 47 5.00e-04 actcactgat tcttttct ctgcttgatc chr6:44194637-44194717 32 5.94e-04 cctcccatca tctttcct cctccttccc chr12:66871-66951 22 6.20e-04 CACACACACA TCTGTCTC CCCTGGCCCA chr15:75052843-75052923 66 6.46e-04 TTTGCTCTCA TCTTTTCC CGTGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTYTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:35318816-35318896 1.6e-05 10_[+1]_62 chr7:75424593-75424673 1.6e-05 54_[+1]_18 chr6:37391969-37392049 1.6e-05 50_[+1]_22 chr19:41344563-41344643 1.6e-05 48_[+1]_24 chr16:84758949-84759029 1.6e-05 63_[+1]_9 chr7:97760686-97760766 1.6e-05 7_[+1]_65 chr10:46983701-46983781 3.1e-05 24_[+1]_48 chr10:29112230-29112310 3.1e-05 66_[+1]_6 chr2:138814954-138815034 4.6e-05 46_[+1]_26 chr9:100706038-100706118 4.6e-05 40_[+1]_32 chr17:48284256-48284336 4.6e-05 27_[+1]_45 chr5:10439992-10440072 4.6e-05 69_[+1]_3 chr6:28188566-28188646 7.6e-05 25_[+1]_47 chrX:153191271-153191351 7.6e-05 20_[+1]_52 chr12:54752258-54752338 7.6e-05 5_[+1]_67 chr12:25087080-25087160 7.6e-05 31_[+1]_41 chr2:91738342-91738422 7.6e-05 36_[+1]_36 chr20:30161439-30161519 9.4e-05 31_[+1]_41 chr4:79785706-79785786 9.4e-05 7_[+1]_65 chr12:58329094-58329174 9.4e-05 32_[+1]_40 chr6:150392423-150392503 9.4e-05 46_[+1]_26 chr19:9694550-9694630 9.4e-05 69_[+1]_3 chr1:142834697-142834777 0.00011 53_[+1]_19 chr6:139854533-139854613 0.00011 48_[+1]_24 chr6:28688354-28688434 0.00011 10_[+1]_62 chr6:44174371-44174451 0.00011 46_[+1]_26 chr6:33408245-33408325 0.00012 29_[+1]_43 chr1:29064048-29064128 0.00015 72_[+1] chr3:113466088-113466168 0.00015 15_[+1]_57 chr6:105850301-105850381 0.00015 49_[+1]_23 chr17:19091380-19091460 0.00015 45_[+1]_27 chr18:778813-778893 0.00018 42_[+1]_30 chr12:15077031-15077111 0.00018 30_[+1]_42 chr14:51135347-51135427 0.00021 31_[+1]_41 chr6:14039098-14039178 0.00024 66_[+1]_6 chr3:12798336-12798416 0.00034 24_[+1]_48 chr19:11495352-11495432 0.00034 5_[+1]_67 chr1:115052669-115052749 0.00037 43_[+1]_29 chr5:77074935-77075015 0.0004 24_[+1]_48 chr3:193311452-193311532 0.00041 14_[+1]_58 chr3:112360034-112360114 0.00046 65_[+1]_7 chr7:102643553-102643633 0.0005 46_[+1]_26 chr6:44194637-44194717 0.00059 31_[+1]_41 chr12:66871-66951 0.00062 21_[+1]_51 chr15:75052843-75052923 0.00065 65_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTYTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTYTT width=8 seqs=45 chr21:35318816-35318896 ( 11) TTTCTTTT 1 chr7:75424593-75424673 ( 55) TTTCTTTT 1 chr6:37391969-37392049 ( 51) TTTCTTTT 1 chr19:41344563-41344643 ( 49) TTTCTTTT 1 chr16:84758949-84759029 ( 64) TTTCTTTT 1 chr7:97760686-97760766 ( 8) TTTCTTTT 1 chr10:46983701-46983781 ( 25) TTTCTCTT 1 chr10:29112230-29112310 ( 67) TTTCTCTT 1 chr2:138814954-138815034 ( 47) TTTCTTTC 1 chr9:100706038-100706118 ( 41) TTTCTTTC 1 chr17:48284256-48284336 ( 28) TTTCTTTC 1 chr5:10439992-10440072 ( 70) TTTCTTTC 1 chr6:28188566-28188646 ( 26) TTTCTTCT 1 chrX:153191271-153191351 ( 21) TCTCTTTT 1 chr12:54752258-54752338 ( 6) TCTCTTTT 1 chr12:25087080-25087160 ( 32) TTTCTTCT 1 chr2:91738342-91738422 ( 37) TTTCTTCT 1 chr20:30161439-30161519 ( 32) TTTTTTTT 1 chr4:79785706-79785786 ( 8) TTTTTTTT 1 chr12:58329094-58329174 ( 33) TTTTTTTT 1 chr6:150392423-150392503 ( 47) TTTTTTTT 1 chr19:9694550-9694630 ( 70) TTTTTTTT 1 chr1:142834697-142834777 ( 54) TTTGTTTT 1 chr6:139854533-139854613 ( 49) TTTGTTTT 1 chr6:28688354-28688434 ( 11) TTTGTTTT 1 chr6:44174371-44174451 ( 47) TTTGTTTT 1 chr6:33408245-33408325 ( 30) TTTCTCTC 1 chr1:29064048-29064128 ( 73) TTTCTCCT 1 chr3:113466088-113466168 ( 16) TTTCTCCT 1 chr6:105850301-105850381 ( 50) TTTCTCCT 1 chr17:19091380-19091460 ( 46) TTTCTCCT 1 chr18:778813-778893 ( 43) TTTGTCTT 1 chr12:15077031-15077111 ( 31) TTTGTCTT 1 chr14:51135347-51135427 ( 32) TCTCTTTC 1 chr6:14039098-14039178 ( 67) TTTTTTTC 1 chr3:12798336-12798416 ( 25) TCTCTCTC 1 chr19:11495352-11495432 ( 6) TCTCTCTC 1 chr1:115052669-115052749 ( 44) TCTCTCCT 1 chr5:77074935-77075015 ( 25) TCTTTCTT 1 chr3:193311452-193311532 ( 15) TTTGTCTC 1 chr3:112360034-112360114 ( 66) TCTCTTCC 1 chr7:102643553-102643633 ( 47) TCTTTTCT 1 chr6:44194637-44194717 ( 32) TCTTTCCT 1 chr12:66871-66951 ( 22) TCTGTCTC 1 chr15:75052843-75052923 ( 66) TCTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTYTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 4.1e+000 -1214 -1214 -1214 197 -1214 19 -1214 152 -1214 -1214 -1214 197 -1214 136 -42 -20 -1214 -1214 -1214 197 -1214 61 -1214 133 -1214 19 -1214 152 -1214 31 -1214 148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTYTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 4.1e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.266667 0.000000 0.733333 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.177778 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.355556 0.000000 0.644444 0.000000 0.266667 0.000000 0.733333 0.000000 0.288889 0.000000 0.711111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTYTT MEME-1 regular expression -------------------------------------------------------------------------------- T[TC]T[CT]T[TC][TC][TC] -------------------------------------------------------------------------------- Time 4.87 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTYYCTC MEME-2 width = 8 sites = 20 llr = 179 E-value = 6.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTYYCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:67a2a probability G :::2:::: matrix T 1:a34:91 bits 2.1 * * 1.9 *** * * 1.7 *** * * 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** **** (12.9 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCTC consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTYYCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:115052669-115052749 73 1.04e-05 CGCCAAGTCC CCTCCCTC chr6:44194637-44194717 18 1.04e-05 actgtctttc cctccctc ccatcatctt chr12:112554083-11255416 20 1.04e-05 aagcgatcct cctccctc agtctcccga chr19:29105869-29105949 32 2.18e-05 gaaatacttg ccttcctc accaccccta chr11:65627446-65627526 19 2.18e-05 TTACAGTCCT CCTTCCTC TAGGCCTCTG chr12:53765340-53765420 61 2.18e-05 cccttccctt ccttcctc CAGCCTCTTC chr2:138814954-138815034 16 3.32e-05 ccttccttcc cctctctc tttctttctc chr10:29112230-29112310 16 3.32e-05 cctctctctc cctctctc tGTGTCTGAC chr12:54752258-54752338 52 3.32e-05 CCTGCTTCTC CCTCTCTC TCACCTCCCT chr22:29548698-29548778 3 3.32e-05 tt cctctctc taaagacagg chr19:4471120-4471200 5 4.38e-05 ttct cctgcctc agcttcctga chr19:14661955-14662035 39 4.38e-05 taacgattct cctgcctc aggctcctga chr15:51046082-51046162 21 4.38e-05 aagcaattgt cctgcctc agcctcctga chr17:18967128-18967208 10 5.63e-05 AGGCGAAAA CCTTTCTC GCTACACTGC chr17:19015575-19015655 63 5.63e-05 GAGGCGAAAA CCTTTCTC GCGACATTGC chr19:4328489-4328569 2 6.58e-05 t cctccccc aatccgccca chr2:183990811-183990891 35 6.58e-05 ctcactgcaa cctccccc tccgggctca chr1:37791861-37791941 67 9.82e-05 TCTATTCCTA CCTCTCCC CTTGCC chr11:3887302-3887382 48 1.42e-04 ACTCACTTCA TCTCCCTC TGTTCCCCTT chr6:28188566-28188646 60 1.78e-04 gtgacttaaa ccttcctt ggcatggact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTYYCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:115052669-115052749 1e-05 72_[+2] chr6:44194637-44194717 1e-05 17_[+2]_55 chr12:112554083-11255416 1e-05 19_[+2]_53 chr19:29105869-29105949 2.2e-05 31_[+2]_41 chr11:65627446-65627526 2.2e-05 18_[+2]_54 chr12:53765340-53765420 2.2e-05 60_[+2]_12 chr2:138814954-138815034 3.3e-05 15_[+2]_57 chr10:29112230-29112310 3.3e-05 15_[+2]_57 chr12:54752258-54752338 3.3e-05 51_[+2]_21 chr22:29548698-29548778 3.3e-05 2_[+2]_70 chr19:4471120-4471200 4.4e-05 4_[+2]_68 chr19:14661955-14662035 4.4e-05 38_[+2]_34 chr15:51046082-51046162 4.4e-05 20_[+2]_52 chr17:18967128-18967208 5.6e-05 9_[+2]_63 chr17:19015575-19015655 5.6e-05 62_[+2]_10 chr19:4328489-4328569 6.6e-05 1_[+2]_71 chr2:183990811-183990891 6.6e-05 34_[+2]_38 chr1:37791861-37791941 9.8e-05 66_[+2]_6 chr11:3887302-3887382 0.00014 47_[+2]_25 chr6:28188566-28188646 0.00018 59_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTYYCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTYYCTC width=8 seqs=20 chr1:115052669-115052749 ( 73) CCTCCCTC 1 chr6:44194637-44194717 ( 18) CCTCCCTC 1 chr12:112554083-11255416 ( 20) CCTCCCTC 1 chr19:29105869-29105949 ( 32) CCTTCCTC 1 chr11:65627446-65627526 ( 19) CCTTCCTC 1 chr12:53765340-53765420 ( 61) CCTTCCTC 1 chr2:138814954-138815034 ( 16) CCTCTCTC 1 chr10:29112230-29112310 ( 16) CCTCTCTC 1 chr12:54752258-54752338 ( 52) CCTCTCTC 1 chr22:29548698-29548778 ( 3) CCTCTCTC 1 chr19:4471120-4471200 ( 5) CCTGCCTC 1 chr19:14661955-14662035 ( 39) CCTGCCTC 1 chr15:51046082-51046162 ( 21) CCTGCCTC 1 chr17:18967128-18967208 ( 10) CCTTTCTC 1 chr17:19015575-19015655 ( 63) CCTTTCTC 1 chr19:4328489-4328569 ( 2) CCTCCCCC 1 chr2:183990811-183990891 ( 35) CCTCCCCC 1 chr1:37791861-37791941 ( 67) CCTCTCCC 1 chr11:3887302-3887382 ( 48) TCTCCCTC 1 chr6:28188566-28188646 ( 60) CCTTCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTYYCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6697 E= 6.5e+002 -1097 203 -1097 -235 -1097 210 -1097 -1097 -1097 -1097 -1097 197 -1097 124 -67 23 -1097 148 -1097 45 -1097 210 -1097 -1097 -1097 -64 -1097 173 -1097 203 -1097 -235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTYYCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 6.5e+002 0.000000 0.950000 0.000000 0.050000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.550000 0.150000 0.300000 0.000000 0.650000 0.000000 0.350000 0.000000 1.000000 0.000000 0.000000 0.000000 0.150000 0.000000 0.850000 0.000000 0.950000 0.000000 0.050000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTYYCTC MEME-2 regular expression -------------------------------------------------------------------------------- CCT[CT][CT]CTC -------------------------------------------------------------------------------- Time 8.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CMRCCTCY MEME-3 width = 8 sites = 29 llr = 245 E-value = 1.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMRCCTCY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :55::::: pos.-specific C a517a:a7 probability G ::4::::: matrix T :::3:a:3 bits 2.1 * * * 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * **** Entropy 1.1 ** ***** (12.2 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAACCTCC consensus CGT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRCCTCY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:115052669-115052749 17 1.11e-05 CATATTCTCT CCACCTCC ATTTAATCCA chr19:14661955-14662035 13 1.11e-05 actgcaacct ccacctcc caggttcata chr7:100075975-100076055 65 1.11e-05 AGTGGGCAGG CCACCTCC GGGGCTTC chr4:38324883-38324963 36 1.11e-05 AGTCAGTGCA CCACCTCC TGCATCAAAA chr19:13973397-13973477 34 2.42e-05 cggctcactg caacctcc gcctcccggg chr5:154215156-154215236 69 3.39e-05 actgccagct ccgcctcc cggg chr1:27012762-27012842 47 4.53e-05 cagcccgcct cagcctcc caaagtgctg chr1:47801647-47801727 37 4.53e-05 ctgcccgcct cagcctcc caaagtgctg chr2:183990811-183990891 69 4.53e-05 cctcccacct cagcctcc cagg chr15:102494285-10249436 30 4.53e-05 CCATCGCCAG CAGCCTCC AAACCAGTTT chr19:1727408-1727488 72 4.53e-05 cctccaacct cagcctcc c chr15:75052843-75052923 18 5.75e-05 TCTGCTCTGC CCACCTCT CCTCACACCC chr17:48284256-48284336 57 5.75e-05 ACCCGTTGTC CCACCTCT CCACCCACAT chr1:207865797-207865877 18 5.75e-05 ctcctggtga ccacctct ccatgggaca chr20:36985063-36985143 62 7.18e-05 TCTGTAGGTC CAACCTCT GGTTTGGCTT chr11:1372871-1372951 43 7.18e-05 GTCTGATCTC CAACCTCT ATGCCTCACT chr9:86535771-86535851 27 7.18e-05 GCCCAAGTTT CAACCTCT ACGGTGGGAA chr12:53765340-53765420 69 9.48e-05 ttccttcctc CAGCCTCT TCCT chr21:44297910-44297990 71 1.07e-04 agtgaaaccc ccatctcc ac chrX:11153533-11153613 43 1.07e-04 CTGCCGTTTG CCATCTCC ATGACACCAT chr10:103124622-10312470 52 1.07e-04 agctcctatt ccatctcc ctgctccaaa chr17:56743903-56743983 13 1.21e-04 agtgcgaacg caatctcc cgctaccaca chr6:33408245-33408325 21 1.54e-04 caccttctct ccccctcc atttctctct chr8:117614877-117614957 68 1.54e-04 CATGTGGTGG CAGTCTCC AGGTC chr6:44194637-44194717 60 1.65e-04 tcctgctctc caccctcc TGTTTCCCAG chr6:6969343-6969423 6 1.65e-04 CAGGG CACCCTCC CCTTCTCCAC chr16:67194426-67194506 15 2.06e-04 tggtgaaacc ccgtctct actaaaaata chr6:27302464-27302544 10 2.06e-04 ggtgaaacc ccgtctct actaaaaata chr3:185378348-185378428 73 2.30e-04 ATGAGATCAG CAGTCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRCCTCY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:115052669-115052749 1.1e-05 16_[+3]_56 chr19:14661955-14662035 1.1e-05 12_[+3]_60 chr7:100075975-100076055 1.1e-05 64_[+3]_8 chr4:38324883-38324963 1.1e-05 35_[+3]_37 chr19:13973397-13973477 2.4e-05 33_[+3]_39 chr5:154215156-154215236 3.4e-05 68_[+3]_4 chr1:27012762-27012842 4.5e-05 46_[+3]_26 chr1:47801647-47801727 4.5e-05 36_[+3]_36 chr2:183990811-183990891 4.5e-05 68_[+3]_4 chr15:102494285-10249436 4.5e-05 29_[+3]_43 chr19:1727408-1727488 4.5e-05 71_[+3]_1 chr15:75052843-75052923 5.7e-05 17_[+3]_55 chr17:48284256-48284336 5.7e-05 56_[+3]_16 chr1:207865797-207865877 5.7e-05 17_[+3]_55 chr20:36985063-36985143 7.2e-05 61_[+3]_11 chr11:1372871-1372951 7.2e-05 42_[+3]_30 chr9:86535771-86535851 7.2e-05 26_[+3]_46 chr12:53765340-53765420 9.5e-05 68_[+3]_4 chr21:44297910-44297990 0.00011 70_[+3]_2 chrX:11153533-11153613 0.00011 42_[+3]_30 chr10:103124622-10312470 0.00011 51_[+3]_21 chr17:56743903-56743983 0.00012 12_[+3]_60 chr6:33408245-33408325 0.00015 20_[+3]_52 chr8:117614877-117614957 0.00015 67_[+3]_5 chr6:44194637-44194717 0.00017 59_[+3]_13 chr6:6969343-6969423 0.00017 5_[+3]_67 chr16:67194426-67194506 0.00021 14_[+3]_58 chr6:27302464-27302544 0.00021 9_[+3]_63 chr3:185378348-185378428 0.00023 72_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRCCTCY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMRCCTCY width=8 seqs=29 chr1:115052669-115052749 ( 17) CCACCTCC 1 chr19:14661955-14662035 ( 13) CCACCTCC 1 chr7:100075975-100076055 ( 65) CCACCTCC 1 chr4:38324883-38324963 ( 36) CCACCTCC 1 chr19:13973397-13973477 ( 34) CAACCTCC 1 chr5:154215156-154215236 ( 69) CCGCCTCC 1 chr1:27012762-27012842 ( 47) CAGCCTCC 1 chr1:47801647-47801727 ( 37) CAGCCTCC 1 chr2:183990811-183990891 ( 69) CAGCCTCC 1 chr15:102494285-10249436 ( 30) CAGCCTCC 1 chr19:1727408-1727488 ( 72) CAGCCTCC 1 chr15:75052843-75052923 ( 18) CCACCTCT 1 chr17:48284256-48284336 ( 57) CCACCTCT 1 chr1:207865797-207865877 ( 18) CCACCTCT 1 chr20:36985063-36985143 ( 62) CAACCTCT 1 chr11:1372871-1372951 ( 43) CAACCTCT 1 chr9:86535771-86535851 ( 27) CAACCTCT 1 chr12:53765340-53765420 ( 69) CAGCCTCT 1 chr21:44297910-44297990 ( 71) CCATCTCC 1 chrX:11153533-11153613 ( 43) CCATCTCC 1 chr10:103124622-10312470 ( 52) CCATCTCC 1 chr17:56743903-56743983 ( 13) CAATCTCC 1 chr6:33408245-33408325 ( 21) CCCCCTCC 1 chr8:117614877-117614957 ( 68) CAGTCTCC 1 chr6:44194637-44194717 ( 60) CACCCTCC 1 chr6:6969343-6969423 ( 6) CACCCTCC 1 chr16:67194426-67194506 ( 15) CCGTCTCT 1 chr6:27302464-27302544 ( 10) CCGTCTCT 1 chr3:185378348-185378428 ( 73) CAGTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRCCTCY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 1.6e+001 -1150 210 -1150 -1150 92 105 -1150 -1150 92 -117 67 -1150 -1150 163 -1150 11 -1150 210 -1150 -1150 -1150 -1150 -1150 197 -1150 210 -1150 -1150 -1150 149 -1150 43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRCCTCY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.6e+001 0.000000 1.000000 0.000000 0.000000 0.517241 0.482759 0.000000 0.000000 0.517241 0.103448 0.379310 0.000000 0.000000 0.724138 0.000000 0.275862 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.655172 0.000000 0.344828 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMRCCTCY MEME-3 regular expression -------------------------------------------------------------------------------- C[AC][AG][CT]CTC[CT] -------------------------------------------------------------------------------- Time 12.22 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-4 width = 8 sites = 24 llr = 217 E-value = 5.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a18:9:a pos.-specific C a:82a1a: probability G :::::::: matrix T ::1::::: bits 2.1 * 1.9 ** * ** 1.7 ** * ** 1.5 ** * ** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:86972716-86972796 73 1.64e-05 catggacaaa cacacaca chr7:150056358-150056438 24 1.64e-05 acacacatac cacacaca cacaccccac chr3:12798336-12798416 34 1.64e-05 ctctctctca cacacaca catacacaca chr8:130984911-130984991 58 1.64e-05 gcacacaccc cacacaca tcccaggaac chr4:123654563-123654643 10 1.64e-05 acacacaca cacacaca TCCAGCCATT chr1:27815785-27815865 5 1.64e-05 caca cacacaca cacaGTGTCC chr20:36985063-36985143 20 1.64e-05 cacgcgcaca cacacaca cacacacaca chr21:43831487-43831567 67 1.64e-05 cacatacaga cacacaca taagca chr19:13000811-13000891 41 1.64e-05 AGAATCAAGA CACACACA TTTCTCAACA chr12:68900547-68900627 54 1.64e-05 TGTCTATATA CACACACA GCATTTTTCC chr6:105850301-105850381 29 1.64e-05 cacaaacaca cacacaca cCCCAGCGGA chr12:66871-66951 14 1.64e-05 CCATGACTCA CACACACA TCTGTCTCCC chr15:75052843-75052923 31 3.03e-05 CCTCTCCTCA CACCCACA CTACAAAGAA chr17:48284256-48284336 66 3.03e-05 CCCACCTCTC CACCCACA TACTTTT chr6:6969343-6969423 31 4.43e-05 CACTAACTAC CACACCCA GGGAAGCAGA chr17:10694329-10694409 3 6.35e-05 AA CAAACACA AGTGTATGCT chr12:112554083-11255416 51 6.35e-05 gctgggacta caaacaca catcagaatg chr22:19804142-19804222 32 8.14e-05 acctcacata catacaca ccacacaggc chr4:184270584-184270664 32 9.81e-05 tacagagtga cagacaca aggtttgaag chr4:79785706-79785786 63 1.45e-04 CCTCTTGTGG TACACACA GATATTGGGA chr19:29105869-29105949 4 1.45e-04 gat cacagaca atggtatgaa chr15:102494285-10249436 10 1.45e-04 TCCTCCTGG CACCCCCA CCCCATCGCC chrX:52964056-52964136 62 1.61e-04 CGAAAGCCAC CAACCACA GAGGAAATTC chr11:117997307-11799738 68 2.08e-04 CAAACAGGCG CATACCCA TTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:86972716-86972796 1.6e-05 72_[+4] chr7:150056358-150056438 1.6e-05 23_[+4]_49 chr3:12798336-12798416 1.6e-05 33_[+4]_39 chr8:130984911-130984991 1.6e-05 57_[+4]_15 chr4:123654563-123654643 1.6e-05 9_[+4]_63 chr1:27815785-27815865 1.6e-05 4_[+4]_68 chr20:36985063-36985143 1.6e-05 19_[+4]_53 chr21:43831487-43831567 1.6e-05 66_[+4]_6 chr19:13000811-13000891 1.6e-05 40_[+4]_32 chr12:68900547-68900627 1.6e-05 53_[+4]_19 chr6:105850301-105850381 1.6e-05 28_[+4]_44 chr12:66871-66951 1.6e-05 13_[+4]_59 chr15:75052843-75052923 3e-05 30_[+4]_42 chr17:48284256-48284336 3e-05 65_[+4]_7 chr6:6969343-6969423 4.4e-05 30_[+4]_42 chr17:10694329-10694409 6.3e-05 2_[+4]_70 chr12:112554083-11255416 6.3e-05 50_[+4]_22 chr22:19804142-19804222 8.1e-05 31_[+4]_41 chr4:184270584-184270664 9.8e-05 31_[+4]_41 chr4:79785706-79785786 0.00014 62_[+4]_10 chr19:29105869-29105949 0.00014 3_[+4]_69 chr15:102494285-10249436 0.00014 9_[+4]_63 chrX:52964056-52964136 0.00016 61_[+4]_11 chr11:117997307-11799738 0.00021 67_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=24 chr8:86972716-86972796 ( 73) CACACACA 1 chr7:150056358-150056438 ( 24) CACACACA 1 chr3:12798336-12798416 ( 34) CACACACA 1 chr8:130984911-130984991 ( 58) CACACACA 1 chr4:123654563-123654643 ( 10) CACACACA 1 chr1:27815785-27815865 ( 5) CACACACA 1 chr20:36985063-36985143 ( 20) CACACACA 1 chr21:43831487-43831567 ( 67) CACACACA 1 chr19:13000811-13000891 ( 41) CACACACA 1 chr12:68900547-68900627 ( 54) CACACACA 1 chr6:105850301-105850381 ( 29) CACACACA 1 chr12:66871-66951 ( 14) CACACACA 1 chr15:75052843-75052923 ( 31) CACCCACA 1 chr17:48284256-48284336 ( 66) CACCCACA 1 chr6:6969343-6969423 ( 31) CACACCCA 1 chr17:10694329-10694409 ( 3) CAAACACA 1 chr12:112554083-11255416 ( 51) CAAACACA 1 chr22:19804142-19804222 ( 32) CATACACA 1 chr4:184270584-184270664 ( 32) CAGACACA 1 chr4:79785706-79785786 ( 63) TACACACA 1 chr19:29105869-29105949 ( 4) CACAGACA 1 chr15:102494285-10249436 ( 10) CACCCCCA 1 chrX:52964056-52964136 ( 62) CAACCACA 1 chr11:117997307-11799738 ( 68) CATACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 5.7e-002 -1123 204 -1123 -261 187 -1123 -1123 -1123 -113 168 -251 -162 161 -48 -1123 -1123 -1123 204 -251 -1123 168 -90 -1123 -1123 -1123 210 -1123 -1123 187 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 5.7e-002 0.000000 0.958333 0.000000 0.041667 1.000000 0.000000 0.000000 0.000000 0.125000 0.750000 0.041667 0.083333 0.833333 0.166667 0.000000 0.000000 0.000000 0.958333 0.041667 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 regular expression -------------------------------------------------------------------------------- CACACACA -------------------------------------------------------------------------------- Time 15.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGSCTG MEME-5 width = 8 sites = 13 llr = 139 E-value = 1.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGSCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C aa::5a:: probability G :::a5::a matrix T ::::::a: bits 2.1 ** * * * 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGGCTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGSCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:9086017-9086097 63 1.19e-05 ccactgcact ccaggctg agtgacagag chr6:28688354-28688434 63 1.19e-05 ctcttgttac ccaggctg gagtgcaatg chr22:29548698-29548778 36 1.19e-05 actctgtcgc ccaggctg gagagcagtg chr5:154215156-154215236 26 1.19e-05 gctctgtcgc ccaggctg gagtgcagtg chr22:22845986-22846066 1 1.19e-05 . ccaggctg gtcttgaact chr1:109249397-109249477 53 1.19e-05 actgcattgc ccaggctg gtctggaact chr19:1727408-1727488 28 1.19e-05 gccatattgg ccaggctg gtctcaaact chr21:44297910-44297990 45 2.35e-05 gagatcgaga ccagcctg gctaacacag chr2:26214463-26214543 64 2.35e-05 ccactgcact ccagcctg ggcgacatc chr9:130980648-130980728 5 2.35e-05 AGGG CCAGCCTG GCCACGAACT chr6:133118684-133118764 21 2.35e-05 ccactgcact ccagcctg ggctacagag chr3:71922360-71922440 36 2.35e-05 GGCCCCTTCA CCAGCCTG AGGGGATGAC chr11:73491945-73492025 54 2.35e-05 ccacggcact ccagcctg ggaaacagag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGSCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:9086017-9086097 1.2e-05 62_[+5]_10 chr6:28688354-28688434 1.2e-05 62_[+5]_10 chr22:29548698-29548778 1.2e-05 35_[+5]_37 chr5:154215156-154215236 1.2e-05 25_[+5]_47 chr22:22845986-22846066 1.2e-05 [+5]_72 chr1:109249397-109249477 1.2e-05 52_[+5]_20 chr19:1727408-1727488 1.2e-05 27_[+5]_45 chr21:44297910-44297990 2.3e-05 44_[+5]_28 chr2:26214463-26214543 2.3e-05 63_[+5]_9 chr9:130980648-130980728 2.3e-05 4_[+5]_68 chr6:133118684-133118764 2.3e-05 20_[+5]_52 chr3:71922360-71922440 2.3e-05 35_[+5]_37 chr11:73491945-73492025 2.3e-05 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGSCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGSCTG width=8 seqs=13 chr16:9086017-9086097 ( 63) CCAGGCTG 1 chr6:28688354-28688434 ( 63) CCAGGCTG 1 chr22:29548698-29548778 ( 36) CCAGGCTG 1 chr5:154215156-154215236 ( 26) CCAGGCTG 1 chr22:22845986-22846066 ( 1) CCAGGCTG 1 chr1:109249397-109249477 ( 53) CCAGGCTG 1 chr19:1727408-1727488 ( 28) CCAGGCTG 1 chr21:44297910-44297990 ( 45) CCAGCCTG 1 chr2:26214463-26214543 ( 64) CCAGCCTG 1 chr9:130980648-130980728 ( 5) CCAGCCTG 1 chr6:133118684-133118764 ( 21) CCAGCCTG 1 chr3:71922360-71922440 ( 36) CCAGCCTG 1 chr11:73491945-73492025 ( 54) CCAGCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGSCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 1.2e-002 -1035 210 -1035 -1035 -1035 210 -1035 -1035 187 -1035 -1035 -1035 -1035 -1035 207 -1035 -1035 98 118 -1035 -1035 210 -1035 -1035 -1035 -1035 -1035 197 -1035 -1035 207 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGSCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGSCTG MEME-5 regular expression -------------------------------------------------------------------------------- CCAG[GC]CTG -------------------------------------------------------------------------------- Time 19.42 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:17007445-17007525 1.18e-01 80 chr3:32421743-32421823 2.79e-01 80 chr4:37563065-37563145 9.96e-01 80 chr1:149606028-149606108 7.24e-01 80 chr19:1727408-1727488 4.84e-04 27_[+5(1.19e-05)]_36_[+3(4.53e-05)]_\ 1 chr12:112554083-11255416 6.45e-05 19_[+2(1.04e-05)]_23_[+4(6.35e-05)]_\ 22 chr16:66913868-66913948 5.43e-01 80 chr7:130983471-130983551 3.26e-01 80 chr11:45857695-45857775 9.92e-01 80 chr15:35840776-35840856 9.67e-01 80 chr6:14967650-14967730 8.55e-01 80 chr4:184270584-184270664 2.25e-02 31_[+4(9.81e-05)]_41 chr21:30928123-30928203 2.86e-01 80 chrX:52950426-52950506 7.56e-01 80 chr1:109249397-109249477 6.44e-03 52_[+5(1.19e-05)]_20 chr17:19091380-19091460 1.53e-01 80 chr7:158573664-158573744 1.00e+00 80 chr1:147994344-147994424 7.19e-01 80 chr1:37791861-37791941 5.05e-03 66_[+2(9.82e-05)]_6 chr12:66871-66951 2.62e-04 11_[+4(1.64e-05)]_61 chr8:117614877-117614957 6.10e-02 80 chr6:6969343-6969423 1.26e-03 30_[+4(4.43e-05)]_42 chr7:6543458-6543538 9.16e-01 80 chr18:9014104-9014184 5.07e-01 80 chr5:95404073-95404153 4.05e-01 80 chr2:158108595-158108675 8.74e-01 80 chr1:47800960-47801040 8.76e-01 80 chr5:95042921-95043001 9.95e-01 80 chr5:10439992-10440072 2.53e-03 69_[+1(4.62e-05)]_3 chr17:19015575-19015655 8.81e-03 62_[+2(5.63e-05)]_10 chr6:126091265-126091345 1.70e-02 46_[+2(9.82e-05)]_4_[+2(9.82e-05)]_\ 14 chr3:185378348-185378428 5.49e-02 80 chr17:18967128-18967208 9.69e-03 9_[+2(5.63e-05)]_63 chr22:22845986-22846066 2.57e-03 [+5(1.19e-05)]_72 chr1:207865797-207865877 2.67e-02 17_[+3(5.75e-05)]_55 chr12:122150011-12215009 9.21e-01 80 chr7:97760686-97760766 3.10e-04 7_[+1(1.63e-05)]_65 chr16:9086216-9086296 1.01e-01 80 chr5:118753681-118753761 1.00e+00 80 chr15:102494285-10249436 2.35e-04 29_[+3(4.53e-05)]_43 chr3:170417602-170417682 4.30e-01 80 chr1:27190805-27190885 9.98e-01 80 chr12:15077031-15077111 1.59e-01 80 chr19:9694550-9694630 4.25e-02 69_[+1(9.39e-05)]_3 chr11:73491945-73492025 9.50e-02 53_[+5(2.35e-05)]_19 chr19:1123173-1123253 9.32e-01 80 chr6:105850301-105850381 7.47e-04 [+4(1.64e-05)]_[+4(1.64e-05)]_8_\ [+4(1.64e-05)]_48 chr12:68900547-68900627 6.08e-02 53_[+4(1.64e-05)]_19 chr2:68785937-68786017 4.73e-02 80 chr3:193311452-193311532 1.49e-02 80 chr3:71922360-71922440 3.55e-02 35_[+5(2.35e-05)]_37 chr18:778813-778893 8.38e-02 80 chr6:135514096-135514176 8.34e-01 80 chr7:128114337-128114417 7.78e-01 80 chr19:51640235-51640315 2.87e-01 80 chr6:27302464-27302544 3.43e-02 80 chr17:45253957-45254037 9.99e-01 80 chr10:103124622-10312470 5.15e-02 80 chr3:112360034-112360114 2.80e-03 71_[+5(4.98e-05)]_1 chr18:808773-808853 4.94e-01 80 chr1:207779307-207779387 7.88e-01 80 chr22:30840896-30840976 5.34e-01 80 chr6:139691043-139691123 5.16e-01 80 chr1:24137431-24137511 8.86e-01 80 chrX:55187356-55187436 9.28e-01 80 chr5:61561633-61561713 9.99e-01 80 chr5:77074935-77075015 8.73e-02 80 chr4:38324883-38324963 4.01e-03 35_[+3(1.11e-05)]_37 chr1:43286893-43286973 7.09e-01 80 chr2:91738342-91738422 1.92e-01 36_[+1(7.60e-05)]_36 chr17:10694329-10694409 6.60e-02 2_[+4(6.35e-05)]_70 chr6:44174371-44174451 7.52e-02 80 chr22:19912833-19912913 6.58e-01 80 chrX:52964056-52964136 3.75e-02 80 chr9:110044732-110044812 5.59e-01 80 chr2:108972829-108972909 7.63e-01 80 chr15:51046082-51046162 2.06e-04 20_[+2(4.38e-05)]_52 chr20:52369773-52369853 8.27e-01 80 chr6:31587442-31587522 8.94e-01 80 chr8:21776410-21776490 3.20e-01 80 chr17:26421202-26421282 8.17e-01 80 chr19:5434586-5434666 8.34e-01 80 chr12:25087080-25087160 7.46e-02 31_[+1(7.60e-05)]_41 chr3:129118885-129118965 8.04e-01 80 chr15:45019304-45019384 5.87e-01 80 chr2:68666098-68666178 9.23e-01 80 chr5:154215156-154215236 1.68e-04 25_[+5(1.19e-05)]_35_[+3(3.39e-05)]_\ 4 chr15:69168186-69168266 8.40e-01 80 chr2:183990811-183990891 1.44e-03 31_[+3(2.42e-05)]_29_[+3(4.53e-05)]_\ 4 chr11:117997307-11799738 3.99e-01 80 chr2:70475129-70475209 9.97e-01 80 chr1:47801647-47801727 2.92e-02 36_[+3(4.53e-05)]_36 chr5:34931161-34931241 9.90e-01 80 chr1:16839577-16839657 9.85e-01 80 chr14:23120412-23120492 6.25e-01 80 chr6:150392423-150392503 3.37e-02 41_[+1(9.39e-05)]_31 chr10:51546267-51546347 5.75e-03 80 chr22:29548698-29548778 3.76e-05 2_[+2(3.32e-05)]_25_[+5(1.19e-05)]_\ 37 chr1:145382308-145382388 5.38e-01 80 chr14:102151662-10215174 9.73e-02 80 chr19:7936203-7936283 9.98e-01 80 chr5:53607834-53607914 5.08e-01 80 chr8:146012021-146012101 1.00e+00 80 chr7:100131250-100131330 9.77e-01 80 chr19:13000811-13000891 2.61e-02 40_[+4(1.64e-05)]_32 chr4:2239151-2239231 8.53e-01 80 chr6:31628039-31628119 3.06e-02 80 chr3:113466088-113466168 1.82e-02 80 chr12:54752258-54752338 5.88e-04 1_[+2(3.32e-05)]_42_[+2(3.32e-05)]_\ 21 chr6:28688354-28688434 4.11e-03 62_[+5(1.19e-05)]_10 chr6:27512400-27512480 8.69e-01 80 chr22:20106148-20106228 2.08e-01 80 chr17:35760785-35760865 6.58e-01 80 chr16:2828411-2828491 6.06e-02 80 chr6:52348697-52348777 9.23e-01 80 chr16:9086017-9086097 1.32e-01 62_[+5(1.19e-05)]_10 chr10:72319202-72319282 9.27e-01 80 chr9:86535771-86535851 2.96e-01 26_[+3(7.18e-05)]_24_[+3(7.18e-05)]_\ 14 chr12:56360134-56360214 1.75e-01 80 chrX:11153533-11153613 6.94e-02 80 chr22:21158474-21158554 1.98e-01 80 chr7:2913832-2913912 1.98e-02 80 chr7:127033099-127033179 6.83e-01 80 chr22:22799063-22799143 3.22e-01 80 chr4:3039276-3039356 9.98e-01 80 chr15:66131848-66131928 9.20e-01 80 chr1:148241001-148241081 1.77e-01 80 chr1:27012762-27012842 6.50e-03 46_[+3(4.53e-05)]_26 chr16:84758949-84759029 1.64e-02 33_[+1(1.63e-05)]_10_[+1(1.63e-05)]_\ 4_[+1(1.63e-05)]_9 chr11:57226494-57226574 4.41e-01 80 chr17:57298046-57298126 1.57e-02 80 chr1:149514157-149514237 2.61e-01 80 chr11:1372871-1372951 1.28e-02 42_[+3(7.18e-05)]_30 chr3:14263516-14263596 8.54e-01 80 chr1:149215110-149215190 9.87e-01 80 chr6:33408245-33408325 1.28e-03 80 chr5:132002196-132002276 3.22e-02 80 chr15:83312949-83313029 3.38e-01 80 chr6:27780458-27780538 5.19e-01 80 chr17:62091907-62091987 1.00e+00 80 chr1:54647477-54647557 7.38e-01 80 chr12:53765340-53765420 4.08e-05 60_[+2(2.18e-05)]_[+3(9.48e-05)]_4 chr6:32163064-32163144 6.79e-01 80 chr19:17371895-17371975 4.56e-01 80 chr6:28756869-28756949 8.72e-01 80 chr21:43831487-43831567 1.94e-01 12_[+4(6.35e-05)]_46_[+4(1.64e-05)]_\ 6 chr7:100075975-100076055 8.15e-02 64_[+3(1.11e-05)]_8 chr16:57716856-57716936 9.77e-01 80 chr2:149400805-149400885 9.95e-01 80 chr20:36985063-36985143 7.66e-04 3_[+4(1.64e-05)]_4_[+4(1.64e-05)]_\ [+4(1.64e-05)]_[+4(1.64e-05)]_22_[+3(7.18e-05)]_11 chr19:41344563-41344643 1.24e-02 [+1(3.13e-05)]_2_[+1(4.62e-05)]_1_\ [+1(4.62e-05)]_[+1(1.63e-05)]_13_[+1(1.63e-05)]_2_[+1(4.62e-05)]_1_\ [+1(4.62e-05)]_5 chr12:58329094-58329174 2.80e-02 32_[+1(9.39e-05)]_40 chr17:48284256-48284336 7.81e-06 9_[+1(9.39e-05)]_10_[+1(4.62e-05)]_\ 21_[+3(5.75e-05)]_1_[+4(3.03e-05)]_7 chr1:90461624-90461704 8.53e-01 80 chr6:139854533-139854613 2.73e-01 80 chrX:109245675-109245755 9.87e-01 80 chr7:99277372-99277452 8.40e-01 80 chr1:27815785-27815865 7.74e-03 [+4(1.64e-05)]_[+4(1.64e-05)]_64 chr20:52370556-52370636 3.11e-02 80 chr6:14039098-14039178 1.09e-01 70_[+1(7.60e-05)]_2 chr3:195891548-195891628 9.25e-01 80 chr17:56743903-56743983 1.92e-02 80 chr8:23081524-23081604 6.06e-01 80 chr10:25155793-25155873 1.00e+00 80 chr1:226195345-226195425 1.00e+00 80 chr4:123654563-123654643 1.25e-02 1_[+4(1.64e-05)]_[+4(1.64e-05)]_63 chr9:100706038-100706118 4.96e-02 40_[+1(4.62e-05)]_32 chr19:14661955-14662035 2.60e-04 12_[+3(1.11e-05)]_18_[+2(4.38e-05)]_\ 34 chr6:133118684-133118764 6.49e-03 20_[+5(2.35e-05)]_52 chr6:32015945-32016025 9.79e-01 80 chr19:2362706-2362786 1.00e+00 80 chr19:11495352-11495432 3.51e-02 80 chr3:152311156-152311236 1.00e+00 80 chr9:130980648-130980728 3.13e-02 4_[+5(2.35e-05)]_68 chr6:37391969-37392049 2.62e-03 50_[+1(1.63e-05)]_[+1(9.39e-05)]_14 chr11:3887302-3887382 8.62e-04 80 chrX:153191271-153191351 6.91e-02 20_[+1(7.60e-05)]_52 chr10:29112230-29112310 3.77e-04 5_[+2(3.32e-05)]_2_[+2(3.32e-05)]_\ 20_[+1(3.13e-05)]_15_[+1(3.13e-05)]_6 chr7:75424593-75424673 5.44e-03 4_[+1(4.62e-05)]_26_[+1(4.62e-05)]_\ 8_[+1(1.63e-05)]_18 chr6:28188566-28188646 2.16e-02 25_[+1(7.60e-05)]_47 chr11:120107415-12010749 7.11e-01 80 chr14:51135347-51135427 1.21e-02 80 chr6:44194637-44194717 2.71e-04 17_[+2(1.04e-05)]_55 chr2:145116741-145116821 7.87e-01 80 chr19:6674592-6674672 9.88e-01 80 chr19:19081694-19081774 1.00e+00 80 chr15:75052843-75052923 4.00e-05 17_[+3(5.75e-05)]_5_[+4(3.03e-05)]_\ 42 chr1:115052669-115052749 1.30e-05 16_[+3(1.11e-05)]_17_[+2(3.32e-05)]_\ 23_[+2(1.04e-05)] chr19:45090937-45091017 1.00e+00 80 chr19:13973397-13973477 4.04e-02 33_[+3(2.42e-05)]_39 chr1:142834697-142834777 1.06e-01 80 chr8:130984911-130984991 1.07e-01 31_[+4(8.14e-05)]_18_[+4(1.64e-05)]_\ 15 chr7:6432640-6432720 8.93e-01 80 chr12:77156959-77157039 9.63e-01 80 chr19:45842051-45842131 2.36e-01 80 chr7:133896113-133896193 3.10e-01 80 chr1:148604876-148604956 8.84e-01 80 chr21:35318816-35318896 2.38e-03 2_[+1(4.62e-05)]_[+1(1.63e-05)]_2_\ [+1(4.62e-05)]_[+1(4.62e-05)]_23_[+2(5.63e-05)]_13 chr3:12798336-12798416 5.45e-05 31_[+4(1.64e-05)]_6_[+4(1.64e-05)]_\ 27 chr12:54680942-54681022 9.04e-01 80 chr19:4328489-4328569 2.03e-02 1_[+2(6.58e-05)]_71 chr1:29064048-29064128 5.12e-03 80 chr10:46983701-46983781 1.85e-02 24_[+1(3.13e-05)]_48 chr14:57476780-57476860 7.56e-02 80 chr7:148659930-148660010 7.16e-01 80 chr6:26159737-26159817 9.94e-01 80 chr10:32428683-32428763 4.24e-01 80 chr19:18489056-18489136 5.25e-01 80 chr19:11466644-11466724 3.52e-01 80 chr22:20036087-20036167 3.93e-01 80 chr22:19465479-19465559 5.22e-01 80 chr7:150056358-150056438 1.12e-01 10_[+4(8.14e-05)]_5_[+4(1.64e-05)]_\ 10_[+4(1.64e-05)]_7_[+4(1.64e-05)]_16 chr7:140188797-140188877 6.22e-02 80 chr16:67194426-67194506 4.42e-02 80 chr2:26214463-26214543 1.33e-01 63_[+5(2.35e-05)]_9 chr19:59085284-59085364 8.09e-01 80 chr1:10533689-10533769 5.80e-01 80 chr6:27301107-27301187 1.85e-01 80 chr18:23785465-23785545 1.00e+00 80 chr8:86972716-86972796 2.59e-02 54_[+4(8.14e-05)]_10_[+4(1.64e-05)] chr19:41304395-41304475 8.02e-02 80 chr4:144764491-144764571 1.00e+00 80 chr11:65627446-65627526 1.22e-02 18_[+2(2.18e-05)]_54 chr10:23344596-23344676 1.98e-01 80 chr22:19804142-19804222 1.25e-01 14_[+4(8.14e-05)]_9_[+4(8.14e-05)]_\ 18_[+4(8.14e-05)]_5_[+4(8.14e-05)]_2 chr1:66004491-66004571 3.81e-01 80 chr3:13044229-13044309 4.15e-01 80 chr19:29105869-29105949 2.09e-03 31_[+2(2.18e-05)]_41 chr12:28458574-28458654 3.82e-01 80 chr1:236666181-236666261 1.00e+00 80 chr6:13795322-13795402 7.16e-01 80 chr7:104873515-104873595 1.00e+00 80 chr7:148394065-148394145 1.00e+00 80 chr2:138814954-138815034 4.70e-04 15_[+2(3.32e-05)]_[+1(4.62e-05)]_15_\ [+1(4.62e-05)]_26 chr4:79785706-79785786 1.48e-03 6_[+1(9.39e-05)]_66 chr8:125827843-125827923 9.69e-01 80 chrX:44112530-44112610 2.99e-01 80 chr11:10476461-10476541 7.20e-01 80 chr7:102643553-102643633 2.58e-02 80 chr20:30161439-30161519 9.52e-03 28_[+1(9.39e-05)]_44 chr6:15300862-15300942 6.34e-01 80 chr12:53607390-53607470 7.81e-01 80 chr5:179095569-179095649 2.25e-01 80 chr21:44297910-44297990 1.79e-03 44_[+5(2.35e-05)]_28 chr2:152682504-152682584 3.45e-01 80 chr7:150595758-150595838 1.15e-01 80 chr17:46088883-46088963 9.99e-01 80 chr19:4471120-4471200 1.82e-03 4_[+2(4.38e-05)]_68 chr1:20205106-20205186 8.97e-01 80 chr18:3617846-3617926 8.02e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************