******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZC3H11A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:17470427-17470507 1.0000 80 chr5:35777774-35777854 1.0000 80 chr2:152645796-152645876 1.0000 80 chr7:127494624-127494704 1.0000 80 chr5:159670261-159670341 1.0000 80 chr16:30582002-30582082 1.0000 80 chr22:46480918-46480998 1.0000 80 chr5:39046109-39046189 1.0000 80 chr10:73853386-73853466 1.0000 80 chr3:4988895-4988975 1.0000 80 chr14:103037088-10303716 1.0000 80 chr7:2798775-2798855 1.0000 80 chr17:47445773-47445853 1.0000 80 chr20:61268600-61268680 1.0000 80 chr22:22797810-22797890 1.0000 80 chr9:135233354-135233434 1.0000 80 chr1:99646040-99646120 1.0000 80 chr7:135338577-135338657 1.0000 80 chr3:186711323-186711403 1.0000 80 chr19:49285965-49286045 1.0000 80 chr11:76570904-76570984 1.0000 80 chr1:6464833-6464913 1.0000 80 chr9:132520278-132520358 1.0000 80 chr5:140937508-140937588 1.0000 80 chr10:21530186-21530266 1.0000 80 chr7:27200678-27200758 1.0000 80 chr4:79625637-79625717 1.0000 80 chr16:56716216-56716296 1.0000 80 chr19:35780697-35780777 1.0000 80 chr1:61707198-61707278 1.0000 80 chr1:145063544-145063624 1.0000 80 chrX:102470841-102470921 1.0000 80 chr16:30797154-30797234 1.0000 80 chr20:39688036-39688116 1.0000 80 chr15:85172417-85172497 1.0000 80 chr22:19940523-19940603 1.0000 80 chr7:149103805-149103885 1.0000 80 chr12:33686632-33686712 1.0000 80 chr18:23501711-23501791 1.0000 80 chr1:169780895-169780975 1.0000 80 chr6:149364800-149364880 1.0000 80 chr20:49023001-49023081 1.0000 80 chr22:22003720-22003800 1.0000 80 chr19:857105-857185 1.0000 80 chr11:111638446-11163852 1.0000 80 chr2:136456616-136456696 1.0000 80 chr7:50423284-50423364 1.0000 80 chr2:201170536-201170616 1.0000 80 chr12:14538225-14538305 1.0000 80 chr2:174828214-174828294 1.0000 80 chr2:232316845-232316925 1.0000 80 chr1:24920283-24920363 1.0000 80 chr20:45980471-45980551 1.0000 80 chr1:8909222-8909302 1.0000 80 chr6:116601962-116602042 1.0000 80 chr1:27353352-27353432 1.0000 80 chr4:24668852-24668932 1.0000 80 chr5:133431131-133431211 1.0000 80 chr22:23219759-23219839 1.0000 80 chr21:33939498-33939578 1.0000 80 chr7:130560221-130560301 1.0000 80 chrX:152127477-152127557 1.0000 80 chr12:120821221-12082130 1.0000 80 chr10:82422492-82422572 1.0000 80 chr6:161608545-161608625 1.0000 80 chr16:56642326-56642406 1.0000 80 chr6:31428277-31428357 1.0000 80 chr12:53741874-53741954 1.0000 80 chr6:159699819-159699899 1.0000 80 chr22:22347429-22347509 1.0000 80 chrX:130946909-130946989 1.0000 80 chr22:23234440-23234520 1.0000 80 chr16:87342149-87342229 1.0000 80 chr6:136652779-136652859 1.0000 80 chr2:232527180-232527260 1.0000 80 chr20:31275980-31276060 1.0000 80 chr3:9980784-9980864 1.0000 80 chr22:21301091-21301171 1.0000 80 chr1:24245947-24246027 1.0000 80 chr22:23599146-23599226 1.0000 80 chr2:201728911-201728991 1.0000 80 chr7:157318292-157318372 1.0000 80 chr11:118448928-11844900 1.0000 80 chr22:23467541-23467621 1.0000 80 chr12:76713261-76713341 1.0000 80 chr1:47134061-47134141 1.0000 80 chr1:202907591-202907671 1.0000 80 chr1:35657728-35657808 1.0000 80 chr12:49297778-49297858 1.0000 80 chrX:54071073-54071153 1.0000 80 chr1:211752491-211752571 1.0000 80 chr22:23021770-23021850 1.0000 80 chr9:131495680-131495760 1.0000 80 chr22:22001153-22001233 1.0000 80 chr10:21309592-21309672 1.0000 80 chr7:113061883-113061963 1.0000 80 chr22:21983694-21983774 1.0000 80 chr2:70298157-70298237 1.0000 80 chr11:72144642-72144722 1.0000 80 chr17:48891160-48891240 1.0000 80 chr3:87840962-87841042 1.0000 80 chrX:152110189-152110269 1.0000 80 chr3:185655210-185655290 1.0000 80 chr11:64915297-64915377 1.0000 80 chr11:73675499-73675579 1.0000 80 chr19:17462825-17462905 1.0000 80 chr7:149439264-149439344 1.0000 80 chr11:10879318-10879398 1.0000 80 chr22:23226281-23226361 1.0000 80 chr1:173883570-173883650 1.0000 80 chr12:117109945-11711002 1.0000 80 chr22:22465392-22465472 1.0000 80 chr1:201500000-201500080 1.0000 80 chr22:21923759-21923839 1.0000 80 chr16:85568665-85568745 1.0000 80 chr1:10325218-10325298 1.0000 80 chr16:3740592-3740672 1.0000 80 chr22:22302158-22302238 1.0000 80 chr1:225960111-225960191 1.0000 80 chr22:19946811-19946891 1.0000 80 chr19:19600088-19600168 1.0000 80 chr11:116384823-11638490 1.0000 80 chr17:62604183-62604263 1.0000 80 chr1:16942055-16942135 1.0000 80 chr1:220011208-220011288 1.0000 80 chr1:174231987-174232067 1.0000 80 chr7:69875289-69875369 1.0000 80 chr17:80509856-80509936 1.0000 80 chr1:165682040-165682120 1.0000 80 chr22:22067510-22067590 1.0000 80 chr22:22292961-22293041 1.0000 80 chr22:21221907-21221987 1.0000 80 chr1:19717941-19718021 1.0000 80 chr6:150255514-150255594 1.0000 80 chr18:45991688-45991768 1.0000 80 chr17:41608257-41608337 1.0000 80 chr22:21997425-21997505 1.0000 80 chr1:110089049-110089129 1.0000 80 chr1:176514487-176514567 1.0000 80 chr12:56586913-56586993 1.0000 80 chr2:19548112-19548192 1.0000 80 chr22:21910793-21910873 1.0000 80 chr22:20111663-20111743 1.0000 80 chr1:2787969-2788049 1.0000 80 chr6:157927054-157927134 1.0000 80 chr3:14302796-14302876 1.0000 80 chr1:21697187-21697267 1.0000 80 chr9:123641230-123641310 1.0000 80 chr21:35296456-35296536 1.0000 80 chr1:38399482-38399562 1.0000 80 chr1:20901880-20901960 1.0000 80 chr22:23616331-23616411 1.0000 80 chr10:22539979-22540059 1.0000 80 chr15:93461235-93461315 1.0000 80 chr17:74732614-74732694 1.0000 80 chr22:22301505-22301585 1.0000 80 chr22:19619828-19619908 1.0000 80 chr20:45241939-45242019 1.0000 80 chr18:9771663-9771743 1.0000 80 chr7:129233944-129234024 1.0000 80 chr1:145507384-145507464 1.0000 80 chr1:226510410-226510490 1.0000 80 chr1:145039403-145039483 1.0000 80 chr6:28898550-28898630 1.0000 80 chr22:23470746-23470826 1.0000 80 chr1:160651447-160651527 1.0000 80 chr1:144533615-144533695 1.0000 80 chr10:50189524-50189604 1.0000 80 chr22:23090870-23090950 1.0000 80 chr10:29115541-29115621 1.0000 80 chr21:37792356-37792436 1.0000 80 chr9:131057766-131057846 1.0000 80 chr2:9473895-9473975 1.0000 80 chr6:137819796-137819876 1.0000 80 chr7:150714690-150714770 1.0000 80 chr17:7370434-7370514 1.0000 80 chr1:46806785-46806865 1.0000 80 chr2:208259879-208259959 1.0000 80 chr7:75807593-75807673 1.0000 80 chr22:19491052-19491132 1.0000 80 chr22:23096176-23096256 1.0000 80 chr8:29034587-29034667 1.0000 80 chr22:21986649-21986729 1.0000 80 chr22:23035438-23035518 1.0000 80 chr16:74700038-74700118 1.0000 80 chr22:23130797-23130877 1.0000 80 chr6:139456071-139456151 1.0000 80 chr3:195577816-195577896 1.0000 80 chr22:22555634-22555714 1.0000 80 chr6:31657627-31657707 1.0000 80 chr19:18117929-18118009 1.0000 80 chr1:16947645-16947725 1.0000 80 chrX:2826335-2826415 1.0000 80 chr8:91339105-91339185 1.0000 80 chr1:15455139-15455219 1.0000 80 chr22:21315782-21315862 1.0000 80 chr22:22345152-22345232 1.0000 80 chr19:41104610-41104690 1.0000 80 chr1:110319611-110319691 1.0000 80 chr3:47462685-47462765 1.0000 80 chr11:74959838-74959918 1.0000 80 chr12:54762572-54762652 1.0000 80 chr21:31222288-31222368 1.0000 80 chr7:132700135-132700215 1.0000 80 chr1:4052255-4052335 1.0000 80 chr4:120221777-120221857 1.0000 80 chr2:113017320-113017400 1.0000 80 chr22:20144699-20144779 1.0000 80 chr1:145059081-145059161 1.0000 80 chr2:171786938-171787018 1.0000 80 chr7:100423728-100423808 1.0000 80 chr22:23112841-23112921 1.0000 80 chr6:15248937-15249017 1.0000 80 chr1:35311118-35311198 1.0000 80 chr1:201673508-201673588 1.0000 80 chr22:19110625-19110705 1.0000 80 chr22:22052033-22052113 1.0000 80 chr9:135777356-135777436 1.0000 80 chr22:48047466-48047546 1.0000 80 chr12:54674109-54674189 1.0000 80 chr22:19385274-19385354 1.0000 80 chr3:39231507-39231587 1.0000 80 chr17:76554592-76554672 1.0000 80 chr10:72309866-72309946 1.0000 80 chr22:21213108-21213188 1.0000 80 chr22:21991208-21991288 1.0000 80 chr20:46203982-46204062 1.0000 80 chr2:232651074-232651154 1.0000 80 chr11:10830160-10830240 1.0000 80 chr22:22562375-22562455 1.0000 80 chr6:33239153-33239233 1.0000 80 chr19:11404583-11404663 1.0000 80 chr18:812456-812536 1.0000 80 chr22:22454787-22454867 1.0000 80 chr7:148663992-148664072 1.0000 80 chr1:61649907-61649987 1.0000 80 chr19:1269599-1269679 1.0000 80 chr22:23023838-23023918 1.0000 80 chr22:20057898-20057978 1.0000 80 chr9:131084780-131084860 1.0000 80 chr15:41198693-41198773 1.0000 80 chr6:31740771-31740851 1.0000 80 chr22:19667245-19667325 1.0000 80 chr2:85153036-85153116 1.0000 80 chr22:22101035-22101115 1.0000 80 chr1:155194985-155195065 1.0000 80 chr22:22464306-22464386 1.0000 80 chr1:44301364-44301444 1.0000 80 chr22:22337213-22337293 1.0000 80 chr11:64555185-64555265 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZC3H11A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZC3H11A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.266 C 0.24 G 0.245 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.266 C 0.24 G 0.245 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATAAATAA MEME-1 width = 8 sites = 43 llr = 421 E-value = 4.7e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAAATAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:a9a:aa pos.-specific C :::::::: probability G :::1:::: matrix T :a:::9:: bits 2.1 * 1.9 *** * * 1.6 *** **** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATAAATAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:132700135-132700215 1 2.21e-05 . ataaataa atGTCAGGTA chr22:21315782-21315862 12 2.21e-05 aaataaataa ataaataa ataaGACTGG chr6:137819796-137819876 2 2.21e-05 a ataaataa ataaataaat chr7:129233944-129234024 4 2.21e-05 taa ataaataa ataaatCCCA chr20:45241939-45242019 7 2.21e-05 aaataa ataaataa ataaataaat chr1:176514487-176514567 67 2.21e-05 ctcagaaaaa ataaataa ataaat chr18:45991688-45991768 3 2.21e-05 aa ataaataa ataaatGCAT chr11:64915297-64915377 62 2.21e-05 aaataaataa ataaataa ataGCTCTag chr3:87840962-87841042 3 2.21e-05 aa ataaataa ataTCTGTCC chr3:9980784-9980864 47 2.21e-05 CTAAaaataa ataaataa ataaataaat chr6:31428277-31428357 71 2.21e-05 ctaaaaaata ataaataa at chr12:120821221-12082130 7 2.21e-05 aaataa ataaataa Taaggactgc chr5:133431131-133431211 72 2.21e-05 aaataaataa ataaataa a chr1:8909222-8909302 34 2.21e-05 aaataaataa ataaataa ataaataGAG chr2:201170536-201170616 21 2.21e-05 TTCtaaataa ataaataa ataaataaat chr7:50423284-50423364 47 2.21e-05 aaataaataa ataaataa ataaataaat chr11:111638446-11163852 41 2.21e-05 aaataaataa ataaataa ataaataaat chr22:22003720-22003800 17 2.21e-05 aaataaataa ataaataa ataaaagcta chr7:149103805-149103885 7 2.21e-05 aaataa ataaataa ataaaGCTAA chr15:85172417-85172497 59 2.21e-05 aaataaataa ataaataa aGgcctcacc chr20:39688036-39688116 48 2.21e-05 aaataaataa ataaataa ataaataaGG chr16:30797154-30797234 41 2.21e-05 aaataaataa ataaataa ataaataaat chr1:145063544-145063624 2 2.21e-05 a ataaataa TCAGATCATC chr19:35780697-35780777 41 2.21e-05 aaataaataa ataaataa ataaataaat chr4:79625637-79625717 59 2.21e-05 ACAGAGTGaa ataaataa ataaataaat chr10:21530186-21530266 7 2.21e-05 aaataa ataaataa ataaataaat chr9:132520278-132520358 38 2.21e-05 aaataaataa ataaataa ataaataaat chr17:47445773-47445853 7 2.21e-05 aaataa ataaataa ataaataaat chr7:2798775-2798855 14 2.21e-05 aaataaataa ataaataa ataaataaat chr14:103037088-10303716 47 2.21e-05 aaataaataa ataaataa ataaataaaA chr5:39046109-39046189 24 2.21e-05 GTCTTTAAaa ataaataa ataaataaat chr5:159670261-159670341 21 2.21e-05 aaataaataa ataaataa ataaataaat chr2:152645796-152645876 7 2.21e-05 aaataa ataaataa ataTGTGTGT chr5:35777774-35777854 11 2.21e-05 aaataaataa ataaataa ataaataaat chr12:117109945-11711002 3 4.25e-05 tg atagataa gatgattgat chr17:48891160-48891240 52 4.25e-05 gattagatag atagataa tagatagatg chr2:136456616-136456696 2 4.25e-05 g atagataa gatagattga chr1:169780895-169780975 23 4.25e-05 gattatctaa atagataa tagacagatt chr22:22302158-22302238 72 8.65e-05 AAGCCTAAAG ATAAAAAA C chr19:857105-857185 2 1.08e-04 a ataaacaa caaaCTAGAA chr6:28898550-28898630 3 1.29e-04 cc attaataa catttattta chr16:74700038-74700118 58 1.47e-04 agatagatag atagatag atagatagat chr12:33686632-33686712 5 2.29e-04 TAAA ATAAAAAG AGTAAGTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:132700135-132700215 2.2e-05 [+1]_72 chr22:21315782-21315862 2.2e-05 11_[+1]_61 chr6:137819796-137819876 2.2e-05 1_[+1]_71 chr7:129233944-129234024 2.2e-05 3_[+1]_69 chr20:45241939-45242019 2.2e-05 6_[+1]_66 chr1:176514487-176514567 2.2e-05 66_[+1]_6 chr18:45991688-45991768 2.2e-05 2_[+1]_70 chr11:64915297-64915377 2.2e-05 61_[+1]_11 chr3:87840962-87841042 2.2e-05 2_[+1]_70 chr3:9980784-9980864 2.2e-05 46_[+1]_26 chr6:31428277-31428357 2.2e-05 70_[+1]_2 chr12:120821221-12082130 2.2e-05 6_[+1]_66 chr5:133431131-133431211 2.2e-05 71_[+1]_1 chr1:8909222-8909302 2.2e-05 33_[+1]_39 chr2:201170536-201170616 2.2e-05 20_[+1]_52 chr7:50423284-50423364 2.2e-05 46_[+1]_26 chr11:111638446-11163852 2.2e-05 40_[+1]_32 chr22:22003720-22003800 2.2e-05 16_[+1]_56 chr7:149103805-149103885 2.2e-05 6_[+1]_66 chr15:85172417-85172497 2.2e-05 58_[+1]_14 chr20:39688036-39688116 2.2e-05 47_[+1]_25 chr16:30797154-30797234 2.2e-05 40_[+1]_32 chr1:145063544-145063624 2.2e-05 1_[+1]_71 chr19:35780697-35780777 2.2e-05 40_[+1]_32 chr4:79625637-79625717 2.2e-05 58_[+1]_14 chr10:21530186-21530266 2.2e-05 6_[+1]_66 chr9:132520278-132520358 2.2e-05 37_[+1]_35 chr17:47445773-47445853 2.2e-05 6_[+1]_66 chr7:2798775-2798855 2.2e-05 13_[+1]_59 chr14:103037088-10303716 2.2e-05 46_[+1]_26 chr5:39046109-39046189 2.2e-05 23_[+1]_49 chr5:159670261-159670341 2.2e-05 20_[+1]_52 chr2:152645796-152645876 2.2e-05 6_[+1]_66 chr5:35777774-35777854 2.2e-05 10_[+1]_62 chr12:117109945-11711002 4.3e-05 2_[+1]_70 chr17:48891160-48891240 4.3e-05 51_[+1]_21 chr2:136456616-136456696 4.3e-05 1_[+1]_71 chr1:169780895-169780975 4.3e-05 22_[+1]_50 chr22:22302158-22302238 8.6e-05 71_[+1]_1 chr19:857105-857185 0.00011 1_[+1]_71 chr6:28898550-28898630 0.00013 2_[+1]_70 chr16:74700038-74700118 0.00015 57_[+1]_15 chr12:33686632-33686712 0.00023 4_[+1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAAATAA width=8 seqs=43 chr7:132700135-132700215 ( 1) ATAAATAA 1 chr22:21315782-21315862 ( 12) ATAAATAA 1 chr6:137819796-137819876 ( 2) ATAAATAA 1 chr7:129233944-129234024 ( 4) ATAAATAA 1 chr20:45241939-45242019 ( 7) ATAAATAA 1 chr1:176514487-176514567 ( 67) ATAAATAA 1 chr18:45991688-45991768 ( 3) ATAAATAA 1 chr11:64915297-64915377 ( 62) ATAAATAA 1 chr3:87840962-87841042 ( 3) ATAAATAA 1 chr3:9980784-9980864 ( 47) ATAAATAA 1 chr6:31428277-31428357 ( 71) ATAAATAA 1 chr12:120821221-12082130 ( 7) ATAAATAA 1 chr5:133431131-133431211 ( 72) ATAAATAA 1 chr1:8909222-8909302 ( 34) ATAAATAA 1 chr2:201170536-201170616 ( 21) ATAAATAA 1 chr7:50423284-50423364 ( 47) ATAAATAA 1 chr11:111638446-11163852 ( 41) ATAAATAA 1 chr22:22003720-22003800 ( 17) ATAAATAA 1 chr7:149103805-149103885 ( 7) ATAAATAA 1 chr15:85172417-85172497 ( 59) ATAAATAA 1 chr20:39688036-39688116 ( 48) ATAAATAA 1 chr16:30797154-30797234 ( 41) ATAAATAA 1 chr1:145063544-145063624 ( 2) ATAAATAA 1 chr19:35780697-35780777 ( 41) ATAAATAA 1 chr4:79625637-79625717 ( 59) ATAAATAA 1 chr10:21530186-21530266 ( 7) ATAAATAA 1 chr9:132520278-132520358 ( 38) ATAAATAA 1 chr17:47445773-47445853 ( 7) ATAAATAA 1 chr7:2798775-2798855 ( 14) ATAAATAA 1 chr14:103037088-10303716 ( 47) ATAAATAA 1 chr5:39046109-39046189 ( 24) ATAAATAA 1 chr5:159670261-159670341 ( 21) ATAAATAA 1 chr2:152645796-152645876 ( 7) ATAAATAA 1 chr5:35777774-35777854 ( 11) ATAAATAA 1 chr12:117109945-11711002 ( 3) ATAGATAA 1 chr17:48891160-48891240 ( 52) ATAGATAA 1 chr2:136456616-136456696 ( 2) ATAGATAA 1 chr1:169780895-169780975 ( 23) ATAGATAA 1 chr22:22302158-22302238 ( 72) ATAAAAAA 1 chr19:857105-857185 ( 2) ATAAACAA 1 chr6:28898550-28898630 ( 3) ATTAATAA 1 chr16:74700038-74700118 ( 58) ATAGATAG 1 chr12:33686632-33686712 ( 5) ATAAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.2488 E= 4.7e-038 191 -1207 -1207 -1207 -1207 -1207 -1207 200 188 -1207 -1207 -342 173 -1207 -107 -1207 191 -1207 -1207 -1207 -251 -336 -1207 190 191 -1207 -1207 -1207 184 -1207 -240 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 4.7e-038 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.976744 0.000000 0.000000 0.023256 0.883721 0.000000 0.116279 0.000000 1.000000 0.000000 0.000000 0.000000 0.046512 0.023256 0.000000 0.930233 1.000000 0.000000 0.000000 0.000000 0.953488 0.000000 0.046512 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATAA MEME-1 regular expression -------------------------------------------------------------------------------- ATAAATAA -------------------------------------------------------------------------------- Time 4.90 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATAAAT MEME-2 width = 8 sites = 35 llr = 328 E-value = 3.6e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATAAAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A a9a:a9a1 pos.-specific C :::::::: probability G :1:::1:: matrix T :::9:::9 bits 2.1 1.9 * * * * 1.6 * *** * 1.4 ***** ** Relative 1.2 ******** Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATAAAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:21315782-21315862 2 2.21e-05 t aaataaat aaataaataa chr6:137819796-137819876 16 2.21e-05 ataaataaat aaataaat aaataaataa chr7:129233944-129234024 73 2.21e-05 ctgtctcaat aaataaat chr20:45241939-45242019 29 2.21e-05 ataaataaat aaataaat aaatGGTGGG chr11:64915297-64915377 52 2.21e-05 ataaataaat aaataaat aaataaataa chr3:9980784-9980864 57 2.21e-05 ataaataaat aaataaat aaataaataa chr5:133431131-133431211 46 2.21e-05 ctgtctcagt aaataaat aaataaataa chr1:8909222-8909302 24 2.21e-05 ATGCAGaaat aaataaat aaataaataa chr2:201170536-201170616 31 2.21e-05 ataaataaat aaataaat aaataaaAAC chr7:50423284-50423364 57 2.21e-05 ataaataaat aaataaat aaatGGAAAG chr11:111638446-11163852 63 2.21e-05 ataaataaat aaataaat GGGGTTCTTG chr22:22003720-22003800 3 2.21e-05 at aaataaat aaataaataa chr15:85172417-85172497 49 2.21e-05 ataaataaat aaataaat aaataaataa chr20:39688036-39688116 14 2.21e-05 AACTGCTAGA aaataaat aaataaataa chr16:30797154-30797234 27 2.21e-05 CCCCCTGGTA aaataaat aaataaataa chr19:35780697-35780777 55 2.21e-05 ataaataaat aaataaat aaacggcaaa chr4:79625637-79625717 73 2.21e-05 ataaataaat aaataaat chr10:21530186-21530266 17 2.21e-05 ataaataaat aaataaat aaataaaAAT chr9:132520278-132520358 52 2.21e-05 ataaataaat aaataaat aaataatagc chr17:47445773-47445853 17 2.21e-05 ataaataaat aaataaat GCCAGGATGC chr7:2798775-2798855 4 2.21e-05 aat aaataaat aaataaataa chr14:103037088-10303716 33 2.21e-05 ataaataaat aaataaat aaataaataa chr5:39046109-39046189 50 2.21e-05 ataaataaat aaataaat GCTggccagg chr5:159670261-159670341 11 2.21e-05 ataaataaat aaataaat aaataaataa chr5:35777774-35777854 1 2.21e-05 . aaataaat aaataaataa chr1:169780895-169780975 45 4.25e-05 cagattatct aaatagat aatagacaga chr22:19940523-19940603 2 8.65e-05 t aaataaaA TGAAGCAGCa chr22:22797810-22797890 1 8.65e-05 . aaataaaa tttaaaatta chr15:93461235-93461315 30 1.08e-04 TAAGTTAGCA AAATAAAC ACTAAAGTGA chr1:61707198-61707278 5 1.29e-04 TGCC AAACAAAT TCTCAAAATG chr12:54674109-54674189 26 1.53e-04 AGTTCATTGC AAAAAAAT TGTTACCTCC chr16:74700038-74700118 72 1.71e-04 atagatagat agatagat a chr12:117109945-11711002 64 1.71e-04 atgatagata agatagat gattgatag chr17:48891160-48891240 61 1.71e-04 gatagataat agatagat gatagattag chr1:99646040-99646120 62 1.93e-04 CAACAATCAC AAATAGAA TATTCTAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:21315782-21315862 2.2e-05 1_[+2]_71 chr6:137819796-137819876 2.2e-05 15_[+2]_57 chr7:129233944-129234024 2.2e-05 72_[+2] chr20:45241939-45242019 2.2e-05 28_[+2]_44 chr11:64915297-64915377 2.2e-05 51_[+2]_21 chr3:9980784-9980864 2.2e-05 56_[+2]_16 chr5:133431131-133431211 2.2e-05 45_[+2]_27 chr1:8909222-8909302 2.2e-05 23_[+2]_49 chr2:201170536-201170616 2.2e-05 30_[+2]_42 chr7:50423284-50423364 2.2e-05 56_[+2]_16 chr11:111638446-11163852 2.2e-05 62_[+2]_10 chr22:22003720-22003800 2.2e-05 2_[+2]_70 chr15:85172417-85172497 2.2e-05 48_[+2]_24 chr20:39688036-39688116 2.2e-05 13_[+2]_59 chr16:30797154-30797234 2.2e-05 26_[+2]_46 chr19:35780697-35780777 2.2e-05 54_[+2]_18 chr4:79625637-79625717 2.2e-05 72_[+2] chr10:21530186-21530266 2.2e-05 16_[+2]_56 chr9:132520278-132520358 2.2e-05 51_[+2]_21 chr17:47445773-47445853 2.2e-05 16_[+2]_56 chr7:2798775-2798855 2.2e-05 3_[+2]_69 chr14:103037088-10303716 2.2e-05 32_[+2]_40 chr5:39046109-39046189 2.2e-05 49_[+2]_23 chr5:159670261-159670341 2.2e-05 10_[+2]_62 chr5:35777774-35777854 2.2e-05 [+2]_72 chr1:169780895-169780975 4.3e-05 44_[+2]_28 chr22:19940523-19940603 8.6e-05 1_[+2]_71 chr22:22797810-22797890 8.6e-05 [+2]_72 chr15:93461235-93461315 0.00011 29_[+2]_43 chr1:61707198-61707278 0.00013 4_[+2]_68 chr12:54674109-54674189 0.00015 25_[+2]_47 chr16:74700038-74700118 0.00017 71_[+2]_1 chr12:117109945-11711002 0.00017 63_[+2]_9 chr17:48891160-48891240 0.00017 60_[+2]_12 chr1:99646040-99646120 0.00019 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATAAAT width=8 seqs=35 chr22:21315782-21315862 ( 2) AAATAAAT 1 chr6:137819796-137819876 ( 16) AAATAAAT 1 chr7:129233944-129234024 ( 73) AAATAAAT 1 chr20:45241939-45242019 ( 29) AAATAAAT 1 chr11:64915297-64915377 ( 52) AAATAAAT 1 chr3:9980784-9980864 ( 57) AAATAAAT 1 chr5:133431131-133431211 ( 46) AAATAAAT 1 chr1:8909222-8909302 ( 24) AAATAAAT 1 chr2:201170536-201170616 ( 31) AAATAAAT 1 chr7:50423284-50423364 ( 57) AAATAAAT 1 chr11:111638446-11163852 ( 63) AAATAAAT 1 chr22:22003720-22003800 ( 3) AAATAAAT 1 chr15:85172417-85172497 ( 49) AAATAAAT 1 chr20:39688036-39688116 ( 14) AAATAAAT 1 chr16:30797154-30797234 ( 27) AAATAAAT 1 chr19:35780697-35780777 ( 55) AAATAAAT 1 chr4:79625637-79625717 ( 73) AAATAAAT 1 chr10:21530186-21530266 ( 17) AAATAAAT 1 chr9:132520278-132520358 ( 52) AAATAAAT 1 chr17:47445773-47445853 ( 17) AAATAAAT 1 chr7:2798775-2798855 ( 4) AAATAAAT 1 chr14:103037088-10303716 ( 33) AAATAAAT 1 chr5:39046109-39046189 ( 50) AAATAAAT 1 chr5:159670261-159670341 ( 11) AAATAAAT 1 chr5:35777774-35777854 ( 1) AAATAAAT 1 chr1:169780895-169780975 ( 45) AAATAGAT 1 chr22:19940523-19940603 ( 2) AAATAAAA 1 chr22:22797810-22797890 ( 1) AAATAAAA 1 chr15:93461235-93461315 ( 30) AAATAAAC 1 chr1:61707198-61707278 ( 5) AAACAAAT 1 chr12:54674109-54674189 ( 26) AAAAAAAT 1 chr16:74700038-74700118 ( 72) AGATAGAT 1 chr12:117109945-11711002 ( 64) AGATAGAT 1 chr17:48891160-48891240 ( 61) AGATAGAT 1 chr1:99646040-99646120 ( 62) AAATAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.12623 E= 3.6e-019 191 -1177 -1177 -1177 178 -1177 -151 -1177 191 -1177 -1177 -1177 -321 -307 -1177 192 191 -1177 -1177 -1177 169 -1177 -78 -1177 191 -1177 -1177 -1177 -163 -307 -1177 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 3.6e-019 1.000000 0.000000 0.000000 0.000000 0.914286 0.000000 0.085714 0.000000 1.000000 0.000000 0.000000 0.000000 0.028571 0.028571 0.000000 0.942857 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.085714 0.028571 0.000000 0.885714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAT MEME-2 regular expression -------------------------------------------------------------------------------- AAATAAAT -------------------------------------------------------------------------------- Time 8.66 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTATTT MEME-3 width = 8 sites = 34 llr = 306 E-value = 7.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTATTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9:1:9::: pos.-specific C ::2:::2: probability G :::::::: matrix T 1a7a1a8a bits 2.1 * * * * 1.9 * * * * 1.6 * * * * 1.4 ** *** * Relative 1.2 ** *** * Entropy 1.0 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTTATTT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:44301364-44301444 11 1.73e-05 TCTGTTGTTC ATTTATTT CTGCACTGCA chr6:28898550-28898630 16 1.73e-05 aataacattt atttattt atttatttat chr10:22539979-22540059 58 1.73e-05 ctatctatct atttattt atttatttat chr11:116384823-11638490 68 1.73e-05 CGTGTCTttt atttattt attta chr1:10325218-10325298 44 1.73e-05 AATGGATttt atttattt atttatttat chr12:53741874-53741954 13 1.73e-05 GAAGttattt atttattt atttatttat chr6:161608545-161608625 8 1.73e-05 tttattt atttattt atttatttat chr21:33939498-33939578 16 1.73e-05 ccaattattt atttattt atttatttat chr1:24920283-24920363 68 1.73e-05 CAGAGCGAtt atttattt attta chr12:33686632-33686712 54 1.73e-05 ttatttattt atttattt TGGCAAGCAG chr11:76570904-76570984 34 1.73e-05 TAGACTTttt atttattt atttatttat chr19:49285965-49286045 71 1.73e-05 CCCTCACCtt atttattt at chr3:186711323-186711403 57 1.73e-05 ttatttattt atttattt atttatATGT chr7:135338577-135338657 56 1.73e-05 ttatttattt atttattt atttatttat chr3:4988895-4988975 7 1.73e-05 ttattt atttattt atttatttat chr10:73853386-73853466 12 1.73e-05 tttattattt atttattt atttatttat chr16:30582002-30582082 72 1.73e-05 ttatttattt atttattt a chr7:127494624-127494704 1 1.73e-05 . atttattt atttaGAATA chr12:76713261-76713341 4 5.04e-05 cta atctattt atctatctCC chr6:159699819-159699899 55 5.04e-05 tatcttatct atctattt tatctatcta chr22:22101035-22101115 46 6.67e-05 ttaaaacaaa attttttt tttctttttt chr1:24245947-24246027 31 6.67e-05 ACTTCTTTCT ATTTTTTT TTTCTCCCCC chr22:48047466-48047546 7 8.26e-05 ctatct atctatct atctatcatc chr6:136652779-136652859 16 8.26e-05 ctaatctatc atctatct atctaatcta chr10:82422492-82422572 15 8.26e-05 catctatcta atctatct aatctgtcta chr4:24668852-24668932 19 8.26e-05 ctagatctat atctatct atatctagat chr1:169780895-169780975 65 8.26e-05 tagacagatt atctatct aaatagat chrX:2826335-2826415 55 1.01e-04 ctacatatct atatattt atccatccat chr10:29115541-29115621 73 1.17e-04 aattcactct ttttattt chr4:17470427-17470507 73 1.17e-04 CTGCTTGTAT Ttttattt chr1:27353352-27353432 72 1.51e-04 aaaatcccaa atttatat a chr7:149103805-149103885 61 1.51e-04 CTAGGCTGCT CTTTATTT TGGGTTGGGT chr22:19385274-19385354 47 1.82e-04 CTCAGTTACC ATTTTTCT TAAGCATGAA chr20:46203982-46204062 72 2.00e-04 CTAATTTATT ATATATCT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:44301364-44301444 1.7e-05 10_[+3]_62 chr6:28898550-28898630 1.7e-05 15_[+3]_57 chr10:22539979-22540059 1.7e-05 57_[+3]_15 chr11:116384823-11638490 1.7e-05 67_[+3]_5 chr1:10325218-10325298 1.7e-05 43_[+3]_29 chr12:53741874-53741954 1.7e-05 12_[+3]_60 chr6:161608545-161608625 1.7e-05 7_[+3]_65 chr21:33939498-33939578 1.7e-05 15_[+3]_57 chr1:24920283-24920363 1.7e-05 67_[+3]_5 chr12:33686632-33686712 1.7e-05 53_[+3]_19 chr11:76570904-76570984 1.7e-05 33_[+3]_39 chr19:49285965-49286045 1.7e-05 70_[+3]_2 chr3:186711323-186711403 1.7e-05 56_[+3]_16 chr7:135338577-135338657 1.7e-05 55_[+3]_17 chr3:4988895-4988975 1.7e-05 6_[+3]_66 chr10:73853386-73853466 1.7e-05 11_[+3]_61 chr16:30582002-30582082 1.7e-05 71_[+3]_1 chr7:127494624-127494704 1.7e-05 [+3]_72 chr12:76713261-76713341 5e-05 3_[+3]_69 chr6:159699819-159699899 5e-05 54_[+3]_18 chr22:22101035-22101115 6.7e-05 45_[+3]_27 chr1:24245947-24246027 6.7e-05 30_[+3]_42 chr22:48047466-48047546 8.3e-05 6_[+3]_66 chr6:136652779-136652859 8.3e-05 15_[+3]_57 chr10:82422492-82422572 8.3e-05 14_[+3]_58 chr4:24668852-24668932 8.3e-05 18_[+3]_54 chr1:169780895-169780975 8.3e-05 64_[+3]_8 chrX:2826335-2826415 0.0001 54_[+3]_18 chr10:29115541-29115621 0.00012 72_[+3] chr4:17470427-17470507 0.00012 72_[+3] chr1:27353352-27353432 0.00015 71_[+3]_1 chr7:149103805-149103885 0.00015 60_[+3]_12 chr22:19385274-19385354 0.00018 46_[+3]_26 chr20:46203982-46204062 0.0002 71_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTATTT width=8 seqs=34 chr1:44301364-44301444 ( 11) ATTTATTT 1 chr6:28898550-28898630 ( 16) ATTTATTT 1 chr10:22539979-22540059 ( 58) ATTTATTT 1 chr11:116384823-11638490 ( 68) ATTTATTT 1 chr1:10325218-10325298 ( 44) ATTTATTT 1 chr12:53741874-53741954 ( 13) ATTTATTT 1 chr6:161608545-161608625 ( 8) ATTTATTT 1 chr21:33939498-33939578 ( 16) ATTTATTT 1 chr1:24920283-24920363 ( 68) ATTTATTT 1 chr12:33686632-33686712 ( 54) ATTTATTT 1 chr11:76570904-76570984 ( 34) ATTTATTT 1 chr19:49285965-49286045 ( 71) ATTTATTT 1 chr3:186711323-186711403 ( 57) ATTTATTT 1 chr7:135338577-135338657 ( 56) ATTTATTT 1 chr3:4988895-4988975 ( 7) ATTTATTT 1 chr10:73853386-73853466 ( 12) ATTTATTT 1 chr16:30582002-30582082 ( 72) ATTTATTT 1 chr7:127494624-127494704 ( 1) ATTTATTT 1 chr12:76713261-76713341 ( 4) ATCTATTT 1 chr6:159699819-159699899 ( 55) ATCTATTT 1 chr22:22101035-22101115 ( 46) ATTTTTTT 1 chr1:24245947-24246027 ( 31) ATTTTTTT 1 chr22:48047466-48047546 ( 7) ATCTATCT 1 chr6:136652779-136652859 ( 16) ATCTATCT 1 chr10:82422492-82422572 ( 15) ATCTATCT 1 chr4:24668852-24668932 ( 19) ATCTATCT 1 chr1:169780895-169780975 ( 65) ATCTATCT 1 chrX:2826335-2826415 ( 55) ATATATTT 1 chr10:29115541-29115621 ( 73) TTTTATTT 1 chr4:17470427-17470507 ( 73) TTTTATTT 1 chr1:27353352-27353432 ( 72) ATTTATAT 1 chr7:149103805-149103885 ( 61) CTTTATTT 1 chr22:19385274-19385354 ( 47) ATTTTTCT 1 chr20:46203982-46204062 ( 72) ATATATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.86128 E= 7.1e-011 178 -302 -1173 -208 -1173 -1173 -1173 200 -217 -22 -1173 156 -1173 -1173 -1173 200 178 -1173 -1173 -150 -1173 -1173 -1173 200 -317 -22 -1173 162 -1173 -1173 -1173 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 7.1e-011 0.911765 0.029412 0.000000 0.058824 0.000000 0.000000 0.000000 1.000000 0.058824 0.205882 0.000000 0.735294 0.000000 0.000000 0.000000 1.000000 0.911765 0.000000 0.000000 0.088235 0.000000 0.000000 0.000000 1.000000 0.029412 0.205882 0.000000 0.764706 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATTT MEME-3 regular expression -------------------------------------------------------------------------------- AT[TC]TAT[TC]T -------------------------------------------------------------------------------- Time 12.43 secs. ******************************************************************************** ******************************************************************************** MOTIF AATAAATA MEME-4 width = 8 sites = 23 llr = 220 E-value = 2.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATAAATA MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa:aaa1a pos.-specific C :::::::: probability G :::::::: matrix T ::a:::9: bits 2.1 1.9 * * * 1.6 ****** * 1.4 ****** * Relative 1.2 ******** Entropy 1.0 ******** (13.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATAAATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:137819796-137819876 29 2.21e-05 taaataaata aataaata aataaTAAGA chr20:45241939-45242019 18 2.21e-05 taaataaata aataaata aataaataaa chr11:64915297-64915377 33 2.21e-05 GGGGAATTta aataaata aataaataaa chr3:9980784-9980864 70 2.21e-05 taaataaata aataaata aat chr5:133431131-133431211 59 2.21e-05 taaataaata aataaata aataaataaa chr7:50423284-50423364 38 2.21e-05 CTTGCGaata aataaata aataaataaa chr11:111638446-11163852 28 2.21e-05 tgaaataatg aataaata aataaataaa chr15:85172417-85172497 34 2.21e-05 aaaataaata aataaata aataaataaa chr20:39688036-39688116 31 2.21e-05 taaataaata aataaata aataaataaa chr16:30797154-30797234 52 2.21e-05 taaataaata aataaata aaAACAGCCA chr19:35780697-35780777 32 2.21e-05 aacataaata aataaata aataaataaa chr9:132520278-132520358 25 2.21e-05 cgCTGTCTta aataaata aataaataaa chr7:2798775-2798855 41 2.21e-05 taaataaata aataaata aaataaaaat chr14:103037088-10303716 22 2.21e-05 tcaaaTTTAa aataaata aataaataaa chr5:39046109-39046189 39 2.21e-05 taaataaata aataaata aataaataaa chr5:35777774-35777854 30 2.21e-05 taaataaata aataaata aataGCTGGC chr2:201170536-201170616 40 4.57e-05 taaataaata aataaaAA CCTGAATTGG chr10:21530186-21530266 32 4.57e-05 aataaataaa AATAAAAA TCAATCAAAA chr12:54674109-54674189 57 1.29e-04 CTGCTTGTCT AATACATA GTGTTAATCA chr1:220011208-220011288 38 1.29e-04 AGTTACTTAG AATAAAGA TCGTCCAGTA chr22:23234440-23234520 33 1.29e-04 ATACAAATGT ATTAAATA CAAGCTGCTG chr5:159670261-159670341 32 1.29e-04 taaataaata aataaatg aaAGAAGATC chr6:31428277-31428357 63 1.52e-04 attcttccct aaaaaata ataaataaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:137819796-137819876 2.2e-05 28_[+4]_44 chr20:45241939-45242019 2.2e-05 17_[+4]_55 chr11:64915297-64915377 2.2e-05 32_[+4]_40 chr3:9980784-9980864 2.2e-05 69_[+4]_3 chr5:133431131-133431211 2.2e-05 58_[+4]_14 chr7:50423284-50423364 2.2e-05 37_[+4]_35 chr11:111638446-11163852 2.2e-05 27_[+4]_45 chr15:85172417-85172497 2.2e-05 33_[+4]_39 chr20:39688036-39688116 2.2e-05 30_[+4]_42 chr16:30797154-30797234 2.2e-05 51_[+4]_21 chr19:35780697-35780777 2.2e-05 31_[+4]_41 chr9:132520278-132520358 2.2e-05 24_[+4]_48 chr7:2798775-2798855 2.2e-05 40_[+4]_32 chr14:103037088-10303716 2.2e-05 21_[+4]_51 chr5:39046109-39046189 2.2e-05 38_[+4]_34 chr5:35777774-35777854 2.2e-05 29_[+4]_43 chr2:201170536-201170616 4.6e-05 39_[+4]_33 chr10:21530186-21530266 4.6e-05 31_[+4]_41 chr12:54674109-54674189 0.00013 56_[+4]_16 chr1:220011208-220011288 0.00013 37_[+4]_35 chr22:23234440-23234520 0.00013 32_[+4]_40 chr5:159670261-159670341 0.00013 31_[+4]_41 chr6:31428277-31428357 0.00015 62_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATAAATA width=8 seqs=23 chr6:137819796-137819876 ( 29) AATAAATA 1 chr20:45241939-45242019 ( 18) AATAAATA 1 chr11:64915297-64915377 ( 33) AATAAATA 1 chr3:9980784-9980864 ( 70) AATAAATA 1 chr5:133431131-133431211 ( 59) AATAAATA 1 chr7:50423284-50423364 ( 38) AATAAATA 1 chr11:111638446-11163852 ( 28) AATAAATA 1 chr15:85172417-85172497 ( 34) AATAAATA 1 chr20:39688036-39688116 ( 31) AATAAATA 1 chr16:30797154-30797234 ( 52) AATAAATA 1 chr19:35780697-35780777 ( 32) AATAAATA 1 chr9:132520278-132520358 ( 25) AATAAATA 1 chr7:2798775-2798855 ( 41) AATAAATA 1 chr14:103037088-10303716 ( 22) AATAAATA 1 chr5:39046109-39046189 ( 39) AATAAATA 1 chr5:35777774-35777854 ( 30) AATAAATA 1 chr2:201170536-201170616 ( 40) AATAAAAA 1 chr10:21530186-21530266 ( 32) AATAAAAA 1 chr12:54674109-54674189 ( 57) AATACATA 1 chr1:220011208-220011288 ( 38) AATAAAGA 1 chr22:23234440-23234520 ( 33) ATTAAATA 1 chr5:159670261-159670341 ( 32) AATAAATG 1 chr6:31428277-31428357 ( 63) AAAAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 2.9e-006 191 -1117 -1117 -1117 185 -1117 -1117 -252 -261 -1117 -1117 194 191 -1117 -1117 -1117 185 -246 -1117 -1117 191 -1117 -1117 -1117 -161 -1117 -249 180 185 -1117 -249 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.9e-006 1.000000 0.000000 0.000000 0.000000 0.956522 0.000000 0.000000 0.043478 0.043478 0.000000 0.000000 0.956522 1.000000 0.000000 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.086957 0.000000 0.043478 0.869565 0.956522 0.000000 0.043478 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAATA MEME-4 regular expression -------------------------------------------------------------------------------- AATAAATA -------------------------------------------------------------------------------- Time 16.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCAGRG MEME-5 width = 8 sites = 25 llr = 230 E-value = 7.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCAGRG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :8::a:4: pos.-specific C a:3a:::: probability G ::7::a5a matrix T :2:::::: bits 2.1 * * * * 1.9 * *** * 1.6 * *** * 1.4 * *** * Relative 1.2 ****** * Entropy 1.0 ****** * (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGGG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGRG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:22562375-22562455 2 1.47e-05 C CAGCAGGG GGTGCTGTTG chr1:110319611-110319691 23 1.47e-05 CTGCAATGGC CAGCAGGG GGCAGAACAA chr22:22555634-22555714 34 1.47e-05 GCCTGCAGAC CAGCAGGG GACGCGGTGA chr22:23130797-23130877 55 1.47e-05 TCTTCTCCAC CAGCAGGG GGCAGCACAG chr1:21697187-21697267 31 1.47e-05 AGAAACTGAC CAGCAGGG GACAGCAGGT chr1:201500000-201500080 56 1.47e-05 AGAAAAGCGC CAGCAGGG GTCAGCAGTG chr2:70298157-70298237 65 1.47e-05 ATGGCGTATG CAGCAGGG CAGCAGCC chr22:23112841-23112921 24 3.06e-05 CACCTGGGGG CAGCAGAG AGTAACCTGG chr10:50189524-50189604 29 3.06e-05 TCTGGGTCTC CAGCAGAG GGCACTGCAG chr12:56586913-56586993 7 3.06e-05 ATTGAC CAGCAGAG GGCAACCAAC chr1:19717941-19718021 62 3.06e-05 TGCCGACGTC CAGCAGAG GGCTCTGTGA chr5:133431131-133431211 21 3.06e-05 ccagcctagg cagcagag tgagactctg chr22:19667245-19667325 46 4.50e-05 CAGGCTCGGC CACCAGGG GGCGGTGTGG chr3:47462685-47462765 16 4.50e-05 ACCCCGTCTC CACCAGGG GGCAGAAGAA chr22:23096176-23096256 40 4.50e-05 GTGGAGCAGC CACCAGGG GGAAGCAGAG chr19:857105-857185 55 4.50e-05 AGTAAGCCAC CACCAGGG GGCAGCACAG chr16:3740592-3740672 27 6.06e-05 CACGGGTGGC CACCAGAG GGGGCAAGAC chr22:21923759-21923839 60 6.06e-05 CCCTGACGGA CACCAGAG TTCTTTTAAA chr11:73675499-73675579 47 6.06e-05 TGAGCGCGGC CACCAGAG GGAGTGCCTC chr18:23501711-23501791 7 6.06e-05 CCCATC CACCAGAG GGAGTCTGGC chr22:21213108-21213188 61 7.44e-05 GGGCCCACCG CTGCAGGG GAGAGAGGGG chr22:23470746-23470826 1 7.44e-05 . CTGCAGGG CCAGGGCCCA chr7:75807593-75807673 19 8.94e-05 CGCCTGCTGC CTGCAGAG GGAGCCAGAG chr22:23467541-23467621 43 8.94e-05 CAGAGTCATC CTGCAGAG TGGAAGAGGT chr22:23021770-23021850 49 1.33e-04 CCTGGGATCC CAGCAGTG ACACTGATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGRG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22562375-22562455 1.5e-05 1_[+5]_71 chr1:110319611-110319691 1.5e-05 22_[+5]_50 chr22:22555634-22555714 1.5e-05 33_[+5]_39 chr22:23130797-23130877 1.5e-05 54_[+5]_18 chr1:21697187-21697267 1.5e-05 30_[+5]_42 chr1:201500000-201500080 1.5e-05 55_[+5]_17 chr2:70298157-70298237 1.5e-05 64_[+5]_8 chr22:23112841-23112921 3.1e-05 23_[+5]_49 chr10:50189524-50189604 3.1e-05 28_[+5]_44 chr12:56586913-56586993 3.1e-05 6_[+5]_66 chr1:19717941-19718021 3.1e-05 61_[+5]_11 chr5:133431131-133431211 3.1e-05 20_[+5]_52 chr22:19667245-19667325 4.5e-05 45_[+5]_27 chr3:47462685-47462765 4.5e-05 15_[+5]_57 chr22:23096176-23096256 4.5e-05 39_[+5]_33 chr19:857105-857185 4.5e-05 54_[+5]_18 chr16:3740592-3740672 6.1e-05 26_[+5]_46 chr22:21923759-21923839 6.1e-05 59_[+5]_13 chr11:73675499-73675579 6.1e-05 46_[+5]_26 chr18:23501711-23501791 6.1e-05 6_[+5]_66 chr22:21213108-21213188 7.4e-05 60_[+5]_12 chr22:23470746-23470826 7.4e-05 [+5]_72 chr7:75807593-75807673 8.9e-05 18_[+5]_54 chr22:23467541-23467621 8.9e-05 42_[+5]_30 chr22:23021770-23021850 0.00013 48_[+5]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGRG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCAGRG width=8 seqs=25 chr22:22562375-22562455 ( 2) CAGCAGGG 1 chr1:110319611-110319691 ( 23) CAGCAGGG 1 chr22:22555634-22555714 ( 34) CAGCAGGG 1 chr22:23130797-23130877 ( 55) CAGCAGGG 1 chr1:21697187-21697267 ( 31) CAGCAGGG 1 chr1:201500000-201500080 ( 56) CAGCAGGG 1 chr2:70298157-70298237 ( 65) CAGCAGGG 1 chr22:23112841-23112921 ( 24) CAGCAGAG 1 chr10:50189524-50189604 ( 29) CAGCAGAG 1 chr12:56586913-56586993 ( 7) CAGCAGAG 1 chr1:19717941-19718021 ( 62) CAGCAGAG 1 chr5:133431131-133431211 ( 21) CAGCAGAG 1 chr22:19667245-19667325 ( 46) CACCAGGG 1 chr3:47462685-47462765 ( 16) CACCAGGG 1 chr22:23096176-23096256 ( 40) CACCAGGG 1 chr19:857105-857185 ( 55) CACCAGGG 1 chr16:3740592-3740672 ( 27) CACCAGAG 1 chr22:21923759-21923839 ( 60) CACCAGAG 1 chr11:73675499-73675579 ( 47) CACCAGAG 1 chr18:23501711-23501791 ( 7) CACCAGAG 1 chr22:21213108-21213188 ( 61) CTGCAGGG 1 chr22:23470746-23470826 ( 1) CTGCAGGG 1 chr7:75807593-75807673 ( 19) CTGCAGAG 1 chr22:23467541-23467621 ( 43) CTGCAGAG 1 chr22:23021770-23021850 ( 49) CAGCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGRG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.21773 E= 7.2e-005 -1129 206 -1129 -1129 166 -1129 -1129 -64 -1129 42 147 -1129 -1129 206 -1129 -1129 191 -1129 -1129 -1129 -1129 -1129 203 -1129 73 -1129 109 -264 -1129 -1129 203 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGRG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 7.2e-005 0.000000 1.000000 0.000000 0.000000 0.840000 0.000000 0.000000 0.160000 0.000000 0.320000 0.680000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.440000 0.000000 0.520000 0.040000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGRG MEME-5 regular expression -------------------------------------------------------------------------------- CA[GC]CAG[GA]G -------------------------------------------------------------------------------- Time 19.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:17470427-17470507 2.46e-01 80 chr5:35777774-35777854 1.54e-05 2_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(6.29e-05)]_38 chr2:152645796-152645876 7.68e-06 2_[+1(2.21e-05)]_70 chr7:127494624-127494704 2.75e-02 [+3(1.73e-05)]_72 chr5:159670261-159670341 2.53e-05 [+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_48 chr16:30582002-30582082 2.28e-02 43_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_[+3(1.73e-05)]_5 chr22:46480918-46480998 9.86e-01 80 chr5:39046109-39046189 2.55e-06 23_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_25 chr10:73853386-73853466 1.31e-01 7_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_[+3(1.73e-05)]_41 chr3:4988895-4988975 9.87e-02 2_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_54 chr14:103037088-10303716 2.73e-05 22_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_18 chr7:2798775-2798855 2.05e-05 1_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_[+4(4.57e-05)]_\ 23 chr17:47445773-47445853 6.21e-06 2_[+1(2.21e-05)]_[+1(2.21e-05)]_62 chr20:61268600-61268680 5.89e-01 80 chr22:22797810-22797890 3.94e-02 [+2(8.65e-05)]_72 chr9:135233354-135233434 3.70e-01 80 chr1:99646040-99646120 8.02e-03 80 chr7:135338577-135338657 6.45e-02 39_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_[+3(1.73e-05)]_9 chr3:186711323-186711403 9.96e-03 24_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_[+3(1.73e-05)]_[+3(1.73e-05)]_16 chr19:49285965-49286045 1.56e-03 70_[+3(1.73e-05)]_2 chr11:76570904-76570984 8.64e-02 33_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_[+3(1.73e-05)]_15 chr1:6464833-6464913 9.90e-01 80 chr9:132520278-132520358 2.58e-05 25_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_15 chr5:140937508-140937588 1.18e-01 80 chr10:21530186-21530266 2.40e-05 2_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_5_[+4(4.57e-05)]_41 chr7:27200678-27200758 8.66e-01 80 chr4:79625637-79625717 1.24e-05 58_[+1(2.21e-05)]_[+1(2.21e-05)]_6 chr16:56716216-56716296 9.99e-01 80 chr19:35780697-35780777 1.56e-05 24_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_16 chr1:61707198-61707278 1.91e-01 80 chr1:145063544-145063624 4.65e-05 1_[+1(2.21e-05)]_71 chrX:102470841-102470921 5.40e-01 80 chr16:30797154-30797234 2.39e-05 28_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_20 chr20:39688036-39688116 2.97e-05 15_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_17 chr15:85172417-85172497 1.35e-06 26_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_14 chr22:19940523-19940603 6.30e-03 1_[+2(8.65e-05)]_71 chr7:149103805-149103885 4.43e-07 2_[+1(2.21e-05)]_[+1(2.21e-05)]_62 chr12:33686632-33686712 3.13e-07 3_[+4(4.57e-05)]_14_[+3(1.73e-05)]_\ [+3(1.73e-05)]_4_[+3(1.73e-05)]_[+3(1.73e-05)]_19 chr18:23501711-23501791 1.20e-01 6_[+5(6.06e-05)]_66 chr1:169780895-169780975 2.44e-05 22_[+1(4.25e-05)]_16_[+1(4.25e-05)]_\ 10_[+3(8.26e-05)]_[+2(4.25e-05)] chr6:149364800-149364880 9.43e-01 80 chr20:49023001-49023081 5.24e-01 80 chr22:22003720-22003800 4.82e-06 [+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_56 chr19:857105-857185 9.28e-04 54_[+5(4.50e-05)]_18 chr11:111638446-11163852 2.97e-05 28_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_12 chr2:136456616-136456696 4.55e-03 1_[+1(4.25e-05)]_71 chr7:50423284-50423364 5.97e-06 34_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_14 chr2:201170536-201170616 1.31e-05 16_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_40 chr12:14538225-14538305 9.52e-01 80 chr2:174828214-174828294 2.10e-01 80 chr2:232316845-232316925 7.61e-01 80 chr1:24920283-24920363 2.76e-02 67_[+3(1.73e-05)]_5 chr20:45980471-45980551 4.47e-01 80 chr1:8909222-8909302 7.31e-06 21_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_35 chr6:116601962-116602042 5.91e-02 80 chr1:27353352-27353432 6.42e-02 80 chr4:24668852-24668932 8.23e-02 18_[+3(8.26e-05)]_20_[+3(8.26e-05)]_\ 26 chr5:133431131-133431211 8.56e-08 20_[+5(3.06e-05)]_19_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(2.21e-05)]_1 chr22:23219759-23219839 6.39e-01 80 chr21:33939498-33939578 1.10e-01 11_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_[+3(1.73e-05)]_[+3(1.73e-05)]_29 chr7:130560221-130560301 7.59e-01 80 chrX:152127477-152127557 1.36e-01 80 chr12:120821221-12082130 7.51e-06 2_[+1(2.21e-05)]_70 chr10:82422492-82422572 5.32e-02 5_[+3(8.26e-05)]_1_[+3(8.26e-05)]_\ 58 chr6:161608545-161608625 8.84e-02 3_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_[+3(1.73e-05)]_45 chr16:56642326-56642406 9.40e-01 80 chr6:31428277-31428357 7.37e-07 70_[+1(2.21e-05)]_2 chr12:53741874-53741954 5.12e-02 8_[+3(1.73e-05)]_[+3(1.73e-05)]_\ [+3(1.73e-05)]_48 chr6:159699819-159699899 3.05e-01 18_[+3(8.26e-05)]_28_[+3(5.04e-05)]_\ 1_[+3(8.26e-05)]_9 chr22:22347429-22347509 9.79e-01 80 chrX:130946909-130946989 6.96e-01 80 chr22:23234440-23234520 5.44e-02 80 chr16:87342149-87342229 5.20e-01 80 chr6:136652779-136652859 4.13e-01 15_[+3(8.26e-05)]_19_[+3(8.26e-05)]_\ 17_[+3(8.26e-05)]_5 chr2:232527180-232527260 1.00e+00 80 chr20:31275980-31276060 6.04e-01 80 chr3:9980784-9980864 1.24e-05 42_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_6 chr22:21301091-21301171 7.75e-01 80 chr1:24245947-24246027 9.84e-02 30_[+3(6.67e-05)]_42 chr22:23599146-23599226 3.94e-01 80 chr2:201728911-201728991 9.40e-01 80 chr7:157318292-157318372 8.19e-01 80 chr11:118448928-11844900 7.24e-01 80 chr22:23467541-23467621 4.32e-01 42_[+5(8.94e-05)]_30 chr12:76713261-76713341 3.38e-01 3_[+3(5.04e-05)]_[+3(8.26e-05)]_61 chr1:47134061-47134141 9.99e-01 80 chr1:202907591-202907671 2.61e-01 80 chr1:35657728-35657808 7.04e-01 80 chr12:49297778-49297858 1.28e-01 80 chrX:54071073-54071153 9.65e-01 80 chr1:211752491-211752571 1.45e-01 80 chr22:23021770-23021850 4.48e-01 80 chr9:131495680-131495760 6.86e-01 80 chr22:22001153-22001233 4.50e-01 80 chr10:21309592-21309672 8.23e-01 80 chr7:113061883-113061963 9.47e-01 80 chr22:21983694-21983774 9.07e-01 80 chr2:70298157-70298237 7.00e-02 64_[+5(1.47e-05)]_8 chr11:72144642-72144722 1.00e+00 80 chr17:48891160-48891240 3.12e-03 51_[+1(4.25e-05)]_21 chr3:87840962-87841042 2.32e-06 2_[+1(2.21e-05)]_70 chrX:152110189-152110269 9.70e-01 80 chr3:185655210-185655290 7.69e-01 80 chr11:64915297-64915377 8.08e-06 33_[+1(2.21e-05)]_[+1(2.21e-05)]_\ [+1(2.21e-05)]_[+1(2.21e-05)]_[+1(6.29e-05)]_7 chr11:73675499-73675579 3.49e-01 46_[+5(6.06e-05)]_26 chr19:17462825-17462905 6.86e-01 80 chr7:149439264-149439344 1.00e+00 80 chr11:10879318-10879398 9.95e-01 80 chr22:23226281-23226361 9.43e-01 80 chr1:173883570-173883650 3.55e-01 80 chr12:117109945-11711002 1.26e-02 2_[+1(4.25e-05)]_46_[+1(4.25e-05)]_\ 16 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************