******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB8A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:134555575-134555655 1.0000 80 chr2:65284655-65284735 1.0000 80 chr17:72209469-72209549 1.0000 80 chr6:122601568-122601648 1.0000 80 chr3:85554258-85554338 1.0000 80 chr3:6812087-6812167 1.0000 80 chr11:124041861-12404194 1.0000 80 chr6:157756571-157756651 1.0000 80 chr7:111127059-111127139 1.0000 80 chr6:4337080-4337160 1.0000 80 chr11:63506532-63506612 1.0000 80 chr5:130503281-130503361 1.0000 80 chr1:246349185-246349265 1.0000 80 chr1:142797590-142797670 1.0000 80 chr20:29589282-29589362 1.0000 80 chr16:72660863-72660943 1.0000 80 chr3:150152535-150152615 1.0000 80 chr4:129730303-129730383 1.0000 80 chr1:41157049-41157129 1.0000 80 chr13:81300035-81300115 1.0000 80 chr8:106645866-106645946 1.0000 80 chr7:16300840-16300920 1.0000 80 chr1:220052661-220052741 1.0000 80 chr5:137804787-137804867 1.0000 80 chr4:164416898-164416978 1.0000 80 chr6:15698243-15698323 1.0000 80 chr17:76982505-76982585 1.0000 80 chr2:171996737-171996817 1.0000 80 chr8:67026377-67026457 1.0000 80 chrX:134233118-134233198 1.0000 80 chr6:7118752-7118832 1.0000 80 chr6:11778960-11779040 1.0000 80 chr8:30897397-30897477 1.0000 80 chr6:105389970-105390050 1.0000 80 chr7:104666117-104666197 1.0000 80 chr6:151150131-151150211 1.0000 80 chr18:32683636-32683716 1.0000 80 chr4:100764713-100764793 1.0000 80 chr3:179276370-179276450 1.0000 80 chr3:6532792-6532872 1.0000 80 chr13:81238083-81238163 1.0000 80 chr1:211555599-211555679 1.0000 80 chr17:73029961-73030041 1.0000 80 chr6:27520622-27520702 1.0000 80 chr1:225742136-225742216 1.0000 80 chr6:13988452-13988532 1.0000 80 chr1:186345539-186345619 1.0000 80 chr1:149298600-149298680 1.0000 80 chr12:108296945-10829702 1.0000 80 chr6:27265696-27265776 1.0000 80 chr6:28918786-28918866 1.0000 80 chr7:128911496-128911576 1.0000 80 chr1:149684158-149684238 1.0000 80 chr17:8042806-8042886 1.0000 80 chr19:6361586-6361666 1.0000 80 chr6:28912283-28912363 1.0000 80 chr17:8090237-8090317 1.0000 80 chr7:120883523-120883603 1.0000 80 chr1:161493698-161493778 1.0000 80 chr8:11208783-11208863 1.0000 80 chr6:26328340-26328420 1.0000 80 chr17:37023806-37023886 1.0000 80 chr5:81346124-81346204 1.0000 80 chr1:16872481-16872561 1.0000 80 chr21:11142720-11142800 1.0000 80 chr1:193027466-193027546 1.0000 80 chr6:18258513-18258593 1.0000 80 chr12:125411975-12541205 1.0000 80 chr14:21152120-21152200 1.0000 80 chr12:124068860-12406894 1.0000 80 chr17:37310801-37310881 1.0000 80 chr6:26327766-26327846 1.0000 80 chr17:37309993-37310073 1.0000 80 chr10:52345029-52345109 1.0000 80 chr17:42786107-42786187 1.0000 80 chr1:169281030-169281110 1.0000 80 chr11:113536333-11353641 1.0000 80 chr1:149294673-149294753 1.0000 80 chr1:142781794-142781874 1.0000 80 chr6:27471495-27471575 1.0000 80 chr11:59318617-59318697 1.0000 80 chr7:116594899-116594979 1.0000 80 chr6:28849109-28849189 1.0000 80 chr17:8023690-8023770 1.0000 80 chr21:38727919-38727999 1.0000 80 chr7:158638820-158638900 1.0000 80 chr2:157257720-157257800 1.0000 80 chr6:27129968-27130048 1.0000 80 chr6:28234508-28234588 1.0000 80 chr2:172014013-172014093 1.0000 80 chr1:148000719-148000799 1.0000 80 chr7:104644916-104644996 1.0000 80 chr6:161513138-161513218 1.0000 80 chr6:28456880-28456960 1.0000 80 chr6:26313448-26313528 1.0000 80 chr22:23340314-23340394 1.0000 80 chr6:26701727-26701807 1.0000 80 chr6:27518981-27519061 1.0000 80 chr1:145399261-145399341 1.0000 80 chr17:73030596-73030676 1.0000 80 chr6:28442390-28442470 1.0000 80 chr17:37025617-37025697 1.0000 80 chr18:729019-729099 1.0000 80 chr6:27526541-27526621 1.0000 80 chr17:8089600-8089680 1.0000 80 chr13:93272112-93272192 1.0000 80 chr6:27059490-27059570 1.0000 80 chr15:60777325-60777405 1.0000 80 chr1:161736041-161736121 1.0000 80 chr19:4724692-4724772 1.0000 80 chr7:131091841-131091921 1.0000 80 chr6:68607968-68608048 1.0000 80 chr6:27559655-27559735 1.0000 80 chr6:26474754-26474834 1.0000 80 chr1:55741428-55741508 1.0000 80 chr15:93427885-93427965 1.0000 80 chr6:26286681-26286761 1.0000 80 chr17:8023031-8023111 1.0000 80 chr6:27551397-27551477 1.0000 80 chr18:846699-846779 1.0000 80 chr2:12072369-12072449 1.0000 80 chr12:69723404-69723484 1.0000 80 chr6:28911468-28911548 1.0000 80 chr21:30374580-30374660 1.0000 80 chr6:26577288-26577368 1.0000 80 chr6:28785112-28785192 1.0000 80 chr6:13661642-13661722 1.0000 80 chr6:27763713-27763793 1.0000 80 chr7:135764733-135764813 1.0000 80 chr6:26553678-26553758 1.0000 80 chr7:106376735-106376815 1.0000 80 chr6:27263154-27263234 1.0000 80 chr3:3221885-3221965 1.0000 80 chr11:59327861-59327941 1.0000 80 chr2:70476203-70476283 1.0000 80 chr9:100718945-100719025 1.0000 80 chr6:28908764-28908844 1.0000 80 chr5:89952163-89952243 1.0000 80 chr5:173043731-173043811 1.0000 80 chr6:28949927-28950007 1.0000 80 chr1:204476165-204476245 1.0000 80 chr2:70471457-70471537 1.0000 80 chr19:1383469-1383549 1.0000 80 chr2:70143190-70143270 1.0000 80 chr6:26569025-26569105 1.0000 80 chr14:21077549-21077629 1.0000 80 chr1:145397919-145397999 1.0000 80 chr12:125424354-12542443 1.0000 80 chr6:147944816-147944896 1.0000 80 chr22:23308843-23308923 1.0000 80 chr6:28763822-28763902 1.0000 80 chr10:65222367-65222447 1.0000 80 chr6:28806201-28806281 1.0000 80 chr6:28909420-28909500 1.0000 80 chr2:27273944-27274024 1.0000 80 chr6:26533187-26533267 1.0000 80 chr6:45413242-45413322 1.0000 80 chr16:12009904-12009984 1.0000 80 chr19:45458279-45458359 1.0000 80 chr6:26334376-26334456 1.0000 80 chr19:56826325-56826405 1.0000 80 chr1:151138495-151138575 1.0000 80 chr3:160167180-160167260 1.0000 80 chr6:28831521-28831601 1.0000 80 chr10:22518468-22518548 1.0000 80 chr12:31886339-31886419 1.0000 80 chr6:147214893-147214973 1.0000 80 chr1:179849686-179849766 1.0000 80 chr18:1406906-1406986 1.0000 80 chr7:129806502-129806582 1.0000 80 chr1:161369542-161369622 1.0000 80 chr1:220050436-220050516 1.0000 80 chr1:142808390-142808470 1.0000 80 chr6:26556648-26556728 1.0000 80 chr6:27515608-27515688 1.0000 80 chr5:180600569-180600649 1.0000 80 chr3:33867325-33867405 1.0000 80 chr3:169489969-169490049 1.0000 80 chr12:98897991-98898071 1.0000 80 chr6:36068092-36068172 1.0000 80 chr6:27344107-27344187 1.0000 80 chr15:26327437-26327517 1.0000 80 chr6:27779603-27779683 1.0000 80 chr6:32223925-32224005 1.0000 80 chr5:171433754-171433834 1.0000 80 chr1:12471245-12471325 1.0000 80 chr6:110501479-110501559 1.0000 80 chr18:1407651-1407731 1.0000 80 chr7:103255094-103255174 1.0000 80 chr12:96429757-96429837 1.0000 80 chr1:149680268-149680348 1.0000 80 chr3:33817891-33817971 1.0000 80 chr1:167684760-167684840 1.0000 80 chr8:126348262-126348342 1.0000 80 chr1:222638317-222638397 1.0000 80 chr7:130757314-130757394 1.0000 80 chr1:161510000-161510080 1.0000 80 chr11:59323850-59323930 1.0000 80 chr5:180649458-180649538 1.0000 80 chr6:28510977-28511057 1.0000 80 chr1:161397920-161398000 1.0000 80 chr1:185122626-185122706 1.0000 80 chr6:26595027-26595107 1.0000 80 chr8:26245002-26245082 1.0000 80 chr6:26322975-26323055 1.0000 80 chr7:139025367-139025447 1.0000 80 chr21:31030073-31030153 1.0000 80 chr6:27560669-27560749 1.0000 80 chr7:158989374-158989454 1.0000 80 chr1:212962963-212963043 1.0000 80 chr15:40886078-40886158 1.0000 80 chr12:94135366-94135446 1.0000 80 chr6:26554321-26554401 1.0000 80 chr2:174650566-174650646 1.0000 80 chr6:28921113-28921193 1.0000 80 chr1:67895909-67895989 1.0000 80 chr3:169852451-169852531 1.0000 80 chr5:180645307-180645387 1.0000 80 chr6:126101444-126101524 1.0000 80 chr1:78224381-78224461 1.0000 80 chr6:50968703-50968783 1.0000 80 chr1:223999388-223999468 1.0000 80 chr17:36373938-36374018 1.0000 80 chr20:32398929-32399009 1.0000 80 chr17:73031161-73031241 1.0000 80 chr6:28626057-28626137 1.0000 80 chr6:27300778-27300858 1.0000 80 chr17:45693180-45693260 1.0000 80 chr6:27636342-27636422 1.0000 80 chr6:27870732-27870812 1.0000 80 chr1:142830272-142830352 1.0000 80 chr1:246354958-246355038 1.0000 80 chr1:167683879-167683959 1.0000 80 chr6:126269855-126269935 1.0000 80 chr8:42697418-42697498 1.0000 80 chr15:65597125-65597205 1.0000 80 chr14:58706704-58706784 1.0000 80 chr6:27487246-27487326 1.0000 80 chr17:8130383-8130463 1.0000 80 chr1:145082371-145082451 1.0000 80 chr17:66016026-66016106 1.0000 80 chr21:27107514-27107594 1.0000 80 chr7:149388325-149388405 1.0000 80 chr11:17376452-17376532 1.0000 80 chr1:45196649-45196729 1.0000 80 chr20:29634216-29634296 1.0000 80 chr2:232646298-232646378 1.0000 80 chr1:11968345-11968425 1.0000 80 chr6:143386732-143386812 1.0000 80 chr6:27302828-27302908 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZBTB8A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB8A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.208 G 0.209 T 0.293 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.208 G 0.209 T 0.293 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-1 width = 8 sites = 9 llr = 98 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a::::9: pos.-specific C :::a:a:: probability G ::a::::a matrix T a:::a:1: bits 2.3 ** * * 2.0 ** * * 1.8 ****** * 1.6 ****** * Relative 1.4 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:27636342-27636422 27 1.36e-05 TGTggccggt tagctcag tcggctagag chr6:26554321-26554401 36 1.36e-05 GGTggccggt tagctcag ttggttagag chr11:59323850-59323930 59 1.36e-05 GGGgcccgga tagctcag tcggtagagc chr1:222638317-222638397 37 1.36e-05 GTGggctcca tagctcag tggttagagc chr6:26569025-26569105 68 1.36e-05 AATccttcga tagctcag ttggt chr6:26553678-26553758 60 1.36e-05 GTAggggatg tagctcag tggtagagcg chr6:26577288-26577368 51 1.36e-05 TGTccttcga tagctcag ttggtagagc chr6:28918786-28918866 27 1.36e-05 GGAgcccgga tagctcag tcggtagagc chr11:17376452-17376532 56 2.74e-05 TATAGATGTC TAGCTCTG CATTGTTAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27636342-27636422 1.4e-05 26_[+1]_46 chr6:26554321-26554401 1.4e-05 35_[+1]_37 chr11:59323850-59323930 1.4e-05 58_[+1]_14 chr1:222638317-222638397 1.4e-05 36_[+1]_36 chr6:26569025-26569105 1.4e-05 67_[+1]_5 chr6:26553678-26553758 1.4e-05 59_[+1]_13 chr6:26577288-26577368 1.4e-05 50_[+1]_22 chr6:28918786-28918866 1.4e-05 26_[+1]_46 chr11:17376452-17376532 2.7e-05 55_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=9 chr6:27636342-27636422 ( 27) TAGCTCAG 1 chr6:26554321-26554401 ( 36) TAGCTCAG 1 chr11:59323850-59323930 ( 59) TAGCTCAG 1 chr1:222638317-222638397 ( 37) TAGCTCAG 1 chr6:26569025-26569105 ( 68) TAGCTCAG 1 chr6:26553678-26553758 ( 60) TAGCTCAG 1 chr6:26577288-26577368 ( 51) TAGCTCAG 1 chr6:28918786-28918866 ( 27) TAGCTCAG 1 chr11:17376452-17376532 ( 56) TAGCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 1.5e+002 -982 -982 -982 177 179 -982 -982 -982 -982 -982 226 -982 -982 226 -982 -982 -982 -982 -982 177 -982 226 -982 -982 162 -982 -982 -140 -982 -982 226 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.5e+002 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-1 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 5.02 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCACTGA MEME-2 width = 8 sites = 7 llr = 79 E-value = 4.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCACTGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A a::a:::a pos.-specific C :aa:a::: probability G ::::::a: matrix T :::::a:: bits 2.3 ** * * 2.0 ** * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCACTGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACTGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:27870732-27870812 6 1.34e-05 attct accactga accaccaatg chr6:27300778-27300858 73 1.34e-05 GTTTCTGAAG ACCACTGA chr6:28626057-28626137 10 1.34e-05 atgcgctct accactga gctacatccc chr6:28806201-28806281 73 1.34e-05 cacgcgctct accactga chr1:149294673-149294753 45 1.34e-05 cgagaattct accactga accaccagtg chr17:37309993-37310073 47 1.34e-05 caaatgctct accactga gctatacccc chr1:16872481-16872561 5 1.34e-05 ttct accactga accaccaatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACTGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27870732-27870812 1.3e-05 5_[+2]_67 chr6:27300778-27300858 1.3e-05 72_[+2] chr6:28626057-28626137 1.3e-05 9_[+2]_63 chr6:28806201-28806281 1.3e-05 72_[+2] chr1:149294673-149294753 1.3e-05 44_[+2]_28 chr17:37309993-37310073 1.3e-05 46_[+2]_26 chr1:16872481-16872561 1.3e-05 4_[+2]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACTGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCACTGA width=8 seqs=7 chr6:27870732-27870812 ( 6) ACCACTGA 1 chr6:27300778-27300858 ( 73) ACCACTGA 1 chr6:28626057-28626137 ( 10) ACCACTGA 1 chr6:28806201-28806281 ( 73) ACCACTGA 1 chr1:149294673-149294753 ( 45) ACCACTGA 1 chr17:37309993-37310073 ( 47) ACCACTGA 1 chr1:16872481-16872561 ( 5) ACCACTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACTGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 4.6e+002 178 -945 -945 -945 -945 226 -945 -945 -945 226 -945 -945 178 -945 -945 -945 -945 226 -945 -945 -945 -945 -945 177 -945 -945 226 -945 178 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACTGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACTGA MEME-2 regular expression -------------------------------------------------------------------------------- ACCACTGA -------------------------------------------------------------------------------- Time 8.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTAGAGC MEME-3 width = 8 sites = 13 llr = 128 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:9:: pos.-specific C ::2::1:7 probability G a8::a:a3 matrix T :28::::: bits 2.3 * * * 2.0 * * * 1.8 * ** * 1.6 ** ** * Relative 1.4 ** ***** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTAGAGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:59323850-59323930 69 9.78e-06 tagctcagtc ggtagagc atca chr6:26553678-26553758 69 9.78e-06 gtagctcagt ggtagagc gcat chr6:26577288-26577368 61 9.78e-06 tagctcagtt ggtagagc ggaggactgt chr6:28912283-28912363 36 9.78e-06 TAATCATCTT GGTAGAGC CGTTGGTTAA chr6:28918786-28918866 37 9.78e-06 tagctcagtc ggtagagc atcagacttt chr8:67026377-67026457 64 9.78e-06 tagctcaaat ggtagagc gctcgctta chr12:125424354-12542443 38 1.96e-05 ATCCAAGGCG GGTAGAGG CCCCTTTGAG chr6:161513138-161513218 18 1.96e-05 ATGTGAGAGT GGTAGAGG TACAAGACCC chr6:26554321-26554401 47 4.03e-05 agctcagttg gttagagc gtggtgctaa chr1:222638317-222638397 47 4.03e-05 tagctcagtg gttagagc actggtcttg chr12:98897991-98898071 55 5.42e-05 gtggcgcaac ggtagcgc gtctgactcc chr11:124041861-12404194 46 5.42e-05 tgggagccca ggcagagg aggcgccgag chr3:85554258-85554338 69 5.42e-05 tgggagccca ggcagagg aggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:59323850-59323930 9.8e-06 68_[+3]_4 chr6:26553678-26553758 9.8e-06 68_[+3]_4 chr6:26577288-26577368 9.8e-06 60_[+3]_12 chr6:28912283-28912363 9.8e-06 35_[+3]_37 chr6:28918786-28918866 9.8e-06 36_[+3]_36 chr8:67026377-67026457 9.8e-06 63_[+3]_9 chr12:125424354-12542443 2e-05 37_[+3]_35 chr6:161513138-161513218 2e-05 17_[+3]_55 chr6:26554321-26554401 4e-05 46_[+3]_26 chr1:222638317-222638397 4e-05 46_[+3]_26 chr12:98897991-98898071 5.4e-05 54_[+3]_18 chr11:124041861-12404194 5.4e-05 45_[+3]_27 chr3:85554258-85554338 5.4e-05 68_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTAGAGC width=8 seqs=13 chr11:59323850-59323930 ( 69) GGTAGAGC 1 chr6:26553678-26553758 ( 69) GGTAGAGC 1 chr6:26577288-26577368 ( 61) GGTAGAGC 1 chr6:28912283-28912363 ( 36) GGTAGAGC 1 chr6:28918786-28918866 ( 37) GGTAGAGC 1 chr8:67026377-67026457 ( 64) GGTAGAGC 1 chr12:125424354-12542443 ( 38) GGTAGAGG 1 chr6:161513138-161513218 ( 18) GGTAGAGG 1 chr6:26554321-26554401 ( 47) GTTAGAGC 1 chr1:222638317-222638397 ( 47) GTTAGAGC 1 chr12:98897991-98898071 ( 55) GGTAGCGC 1 chr11:124041861-12404194 ( 46) GGCAGAGG 1 chr3:85554258-85554338 ( 69) GGCAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 3.9e+003 -1035 -1035 226 -1035 -1035 -1035 202 -93 -1035 -44 -1035 153 179 -1035 -1035 -1035 -1035 -1035 226 -1035 167 -143 -1035 -1035 -1035 -1035 226 -1035 -1035 173 56 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.846154 0.153846 0.000000 0.153846 0.000000 0.846154 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.692308 0.307692 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 regular expression -------------------------------------------------------------------------------- GGTAGAG[CG] -------------------------------------------------------------------------------- Time 12.64 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCACCAR MEME-4 width = 8 sites = 7 llr = 75 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCACCAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::a::a4 pos.-specific C :aa:aa:: probability G :::::::6 matrix T :::::::: bits 2.3 ** ** 2.0 ** ** 1.8 ******* 1.6 ******* Relative 1.4 ******* Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCACCAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACCAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:126101444-126101524 10 9.54e-06 aaccactag accaccag ggaACTTGCA chr1:149680268-149680348 2 9.54e-06 a accaccag tgcCTCTCTC chr1:145399261-145399341 33 9.54e-06 taaccactag accaccag ggaAGCTGCT chr1:149294673-149294753 53 9.54e-06 ctaccactga accaccag tgcCTCTCCC chr6:27870732-27870812 14 2.28e-05 ctaccactga accaccaa tgcCTCGCGT chr1:145397919-145397999 6 2.28e-05 actat accaccaa cgcATCTGAA chr1:16872481-16872561 13 2.28e-05 ctaccactga accaccaa tgcCTCTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACCAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:126101444-126101524 9.5e-06 9_[+4]_63 chr1:149680268-149680348 9.5e-06 1_[+4]_71 chr1:145399261-145399341 9.5e-06 32_[+4]_40 chr1:149294673-149294753 9.5e-06 52_[+4]_20 chr6:27870732-27870812 2.3e-05 13_[+4]_59 chr1:145397919-145397999 2.3e-05 5_[+4]_67 chr1:16872481-16872561 2.3e-05 12_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACCAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCACCAR width=8 seqs=7 chr6:126101444-126101524 ( 10) ACCACCAG 1 chr1:149680268-149680348 ( 2) ACCACCAG 1 chr1:145399261-145399341 ( 33) ACCACCAG 1 chr1:149294673-149294753 ( 53) ACCACCAG 1 chr6:27870732-27870812 ( 14) ACCACCAA 1 chr1:145397919-145397999 ( 6) ACCACCAA 1 chr1:16872481-16872561 ( 13) ACCACCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACCAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 1.2e+004 178 -945 -945 -945 -945 226 -945 -945 -945 226 -945 -945 178 -945 -945 -945 -945 226 -945 -945 -945 226 -945 -945 178 -945 -945 -945 56 -945 145 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACCAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.2e+004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCACCAR MEME-4 regular expression -------------------------------------------------------------------------------- ACCACCA[GA] -------------------------------------------------------------------------------- Time 16.41 secs. ******************************************************************************** ******************************************************************************** MOTIF GYGCCSGG MEME-5 width = 8 sites = 21 llr = 186 E-value = 4.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGCCSGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C :4:8a6:: probability G a1a2:38a matrix T :4:::1:: bits 2.3 * * * 2.0 * * * * 1.8 * * * * 1.6 * * * * Relative 1.4 * *** ** Entropy 1.1 * *** ** (12.8 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGCCCGG consensus C G GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCCSGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:134555575-134555655 69 3.57e-06 GCCTCCGGAG GCGCCCGG AAAG chr20:32398929-32399009 20 1.22e-05 AGCAAAAGAC GCGCCGGG GAGCGCCTGA chr12:125424354-12542443 1 1.22e-05 . GCGCCGGG CACCCTGGCT chr11:59323850-59323930 50 2.08e-05 TTTTCTTCAG GGgcccgg atagctcagt chr6:28806201-28806281 25 2.08e-05 AGGAAtggag gtgccggg gattgaaccc chr19:6361586-6361666 25 2.08e-05 TTGGTAGGGG GGGCCCGG GTGGCGTCAT chr6:27636342-27636422 18 3.44e-05 GCGCATTCGT GTggccgg ttagctcagt chr6:26554321-26554401 27 3.44e-05 TTGGAGACAG GTggccgg ttagctcagt chr17:8089600-8089680 66 3.44e-05 GAGCTGCCGA GTGGCCGG CCgacct chr1:148000719-148000799 57 3.44e-05 CCTTCCTATA GCGCCCAG TAGAACTGAC chr1:67895909-67895989 63 5.01e-05 CTTCCTGTAA GTGCCCAG GCATGATGGT chr17:37025617-37025697 11 5.01e-05 CGCCTCTACA GCGCCTGG AGGCGGCTCC chr8:67026377-67026457 35 5.01e-05 ATAATAAGCC GTGCCCAG CCGTggggga chr16:12009904-12009984 47 5.37e-05 GCTATTTAGC GCGGCGGG AGGTGGAACT chr3:85554258-85554338 24 5.37e-05 ccacagtgca gcggcggg ctgaagggct chr6:26286681-26286761 59 6.07e-05 GTGAGACCGT GTGCCTGG CAGAACagca chr6:4337080-4337160 59 6.07e-05 tgtagcgcca gtgcctgg gaaagcaccc chr11:124041861-12404194 56 7.44e-05 ggcagaggag gcgccgag agcgagcaag chr6:27300778-27300858 25 9.14e-05 tctgggttat gggcccag cacgcttccg chr6:28918786-28918866 18 9.14e-05 CTTTTGCAGG GAgcccgg atagctcagt chr1:151138495-151138575 1 1.50e-04 . GTCCCCGG AAGTACGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCCSGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:134555575-134555655 3.6e-06 68_[+5]_4 chr20:32398929-32399009 1.2e-05 19_[+5]_53 chr12:125424354-12542443 1.2e-05 [+5]_72 chr11:59323850-59323930 2.1e-05 49_[+5]_23 chr6:28806201-28806281 2.1e-05 24_[+5]_48 chr19:6361586-6361666 2.1e-05 24_[+5]_48 chr6:27636342-27636422 3.4e-05 17_[+5]_55 chr6:26554321-26554401 3.4e-05 26_[+5]_46 chr17:8089600-8089680 3.4e-05 65_[+5]_7 chr1:148000719-148000799 3.4e-05 56_[+5]_16 chr1:67895909-67895989 5e-05 62_[+5]_10 chr17:37025617-37025697 5e-05 10_[+5]_62 chr8:67026377-67026457 5e-05 34_[+5]_38 chr16:12009904-12009984 5.4e-05 46_[+5]_26 chr3:85554258-85554338 5.4e-05 23_[+5]_49 chr6:26286681-26286761 6.1e-05 58_[+5]_14 chr6:4337080-4337160 6.1e-05 58_[+5]_14 chr11:124041861-12404194 7.4e-05 55_[+5]_17 chr6:27300778-27300858 9.1e-05 24_[+5]_48 chr6:28918786-28918866 9.1e-05 17_[+5]_55 chr1:151138495-151138575 0.00015 [+5]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCCSGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGCCSGG width=8 seqs=21 chrX:134555575-134555655 ( 69) GCGCCCGG 1 chr20:32398929-32399009 ( 20) GCGCCGGG 1 chr12:125424354-12542443 ( 1) GCGCCGGG 1 chr11:59323850-59323930 ( 50) GGGCCCGG 1 chr6:28806201-28806281 ( 25) GTGCCGGG 1 chr19:6361586-6361666 ( 25) GGGCCCGG 1 chr6:27636342-27636422 ( 18) GTGGCCGG 1 chr6:26554321-26554401 ( 27) GTGGCCGG 1 chr17:8089600-8089680 ( 66) GTGGCCGG 1 chr1:148000719-148000799 ( 57) GCGCCCAG 1 chr1:67895909-67895989 ( 63) GTGCCCAG 1 chr17:37025617-37025697 ( 11) GCGCCTGG 1 chr8:67026377-67026457 ( 35) GTGCCCAG 1 chr16:12009904-12009984 ( 47) GCGGCGGG 1 chr3:85554258-85554338 ( 24) GCGGCGGG 1 chr6:26286681-26286761 ( 59) GTGCCTGG 1 chr6:4337080-4337160 ( 59) GTGCCTGG 1 chr11:124041861-12404194 ( 56) GCGCCGAG 1 chr6:27300778-27300858 ( 25) GGGCCCAG 1 chr6:28918786-28918866 ( 18) GAGCCCGG 1 chr1:151138495-151138575 ( 1) GTCCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCCSGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 4.5e+003 -1104 -1104 226 -1104 -260 87 -55 55 -1104 -213 219 -1104 -1104 187 19 -1104 -1104 226 -1104 -1104 -1104 146 45 -103 -28 -1104 186 -1104 -1104 -1104 226 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCCSGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.5e+003 0.000000 0.000000 1.000000 0.000000 0.047619 0.380952 0.142857 0.428571 0.000000 0.047619 0.952381 0.000000 0.000000 0.761905 0.238095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.285714 0.142857 0.238095 0.000000 0.761905 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCCSGG MEME-5 regular expression -------------------------------------------------------------------------------- G[TC]G[CG]C[CG][GA]G -------------------------------------------------------------------------------- Time 20.18 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:134555575-134555655 1.10e-03 68_[+5(3.57e-06)]_4 chr2:65284655-65284735 7.34e-01 80 chr17:72209469-72209549 5.86e-01 80 chr6:122601568-122601648 7.86e-01 80 chr3:85554258-85554338 2.88e-04 23_[+5(5.37e-05)]_37_[+3(5.42e-05)]_\ 4 chr3:6812087-6812167 9.22e-01 80 chr11:124041861-12404194 8.99e-04 45_[+3(5.42e-05)]_2_[+5(7.44e-05)]_\ 17 chr6:157756571-157756651 2.39e-01 80 chr7:111127059-111127139 8.13e-01 80 chr6:4337080-4337160 1.34e-02 58_[+5(6.07e-05)]_14 chr11:63506532-63506612 4.11e-01 80 chr5:130503281-130503361 2.96e-01 80 chr1:246349185-246349265 7.36e-01 80 chr1:142797590-142797670 9.06e-01 80 chr20:29589282-29589362 9.50e-01 80 chr16:72660863-72660943 6.37e-01 80 chr3:150152535-150152615 1.00e+00 80 chr4:129730303-129730383 9.69e-01 80 chr1:41157049-41157129 5.90e-01 80 chr13:81300035-81300115 9.90e-01 80 chr8:106645866-106645946 9.72e-01 80 chr7:16300840-16300920 6.09e-01 80 chr1:220052661-220052741 3.83e-01 80 chr5:137804787-137804867 5.59e-01 80 chr4:164416898-164416978 6.71e-01 80 chr6:15698243-15698323 9.62e-01 80 chr17:76982505-76982585 9.61e-01 80 chr2:171996737-171996817 9.27e-01 80 chr8:67026377-67026457 1.74e-04 34_[+5(5.01e-05)]_21_[+3(9.78e-06)]_\ 9 chrX:134233118-134233198 5.14e-02 80 chr6:7118752-7118832 8.37e-01 80 chr6:11778960-11779040 8.58e-01 80 chr8:30897397-30897477 9.70e-01 80 chr6:105389970-105390050 6.97e-01 80 chr7:104666117-104666197 6.51e-01 80 chr6:151150131-151150211 1.00e+00 80 chr18:32683636-32683716 6.42e-01 80 chr4:100764713-100764793 9.83e-01 80 chr3:179276370-179276450 9.00e-01 80 chr3:6532792-6532872 1.00e+00 80 chr13:81238083-81238163 2.75e-01 80 chr1:211555599-211555679 8.76e-01 80 chr17:73029961-73030041 3.44e-01 80 chr6:27520622-27520702 9.20e-01 80 chr1:225742136-225742216 9.78e-01 80 chr6:13988452-13988532 9.90e-01 80 chr1:186345539-186345619 9.92e-01 80 chr1:149298600-149298680 4.87e-02 80 chr12:108296945-10829702 3.10e-01 80 chr6:27265696-27265776 3.33e-01 80 chr6:28918786-28918866 6.27e-06 17_[+5(9.14e-05)]_1_[+1(1.36e-05)]_\ 2_[+3(9.78e-06)]_36 chr7:128911496-128911576 8.53e-01 80 chr1:149684158-149684238 3.19e-02 80 chr17:8042806-8042886 8.04e-02 80 chr19:6361586-6361666 7.51e-03 24_[+5(2.08e-05)]_48 chr6:28912283-28912363 5.67e-02 35_[+3(9.78e-06)]_37 chr17:8090237-8090317 2.20e-01 80 chr7:120883523-120883603 7.26e-01 80 chr1:161493698-161493778 1.40e-01 80 chr8:11208783-11208863 6.29e-01 80 chr6:26328340-26328420 5.77e-02 80 chr17:37023806-37023886 9.28e-01 80 chr5:81346124-81346204 9.74e-01 80 chr1:16872481-16872561 1.06e-03 4_[+2(1.34e-05)]_[+4(2.28e-05)]_60 chr21:11142720-11142800 6.23e-01 80 chr1:193027466-193027546 9.44e-01 80 chr6:18258513-18258593 5.98e-01 80 chr12:125411975-12541205 8.93e-01 80 chr14:21152120-21152200 3.92e-02 80 chr12:124068860-12406894 3.63e-01 80 chr17:37310801-37310881 5.85e-01 80 chr6:26327766-26327846 6.38e-01 80 chr17:37309993-37310073 9.78e-03 46_[+2(1.34e-05)]_26 chr10:52345029-52345109 9.41e-01 80 chr17:42786107-42786187 1.40e-02 80 chr1:169281030-169281110 8.79e-01 80 chr11:113536333-11353641 6.68e-01 80 chr1:149294673-149294753 2.70e-05 44_[+2(1.34e-05)]_[+4(9.54e-06)]_20 chr1:142781794-142781874 9.78e-01 80 chr6:27471495-27471575 3.29e-01 80 chr11:59318617-59318697 7.80e-01 80 chr7:116594899-116594979 1.00e+00 80 chr6:28849109-28849189 3.87e-01 80 chr17:8023690-8023770 6.23e-01 80 chr21:38727919-38727999 8.61e-01 80 chr7:158638820-158638900 3.32e-01 80 chr2:157257720-157257800 6.76e-01 80 chr6:27129968-27130048 7.50e-01 80 chr6:28234508-28234588 9.99e-01 80 chr2:172014013-172014093 8.73e-01 80 chr1:148000719-148000799 2.61e-02 56_[+5(3.44e-05)]_16 chr7:104644916-104644996 9.99e-01 80 chr6:161513138-161513218 5.75e-02 17_[+3(1.96e-05)]_55 chr6:28456880-28456960 9.97e-01 80 chr6:26313448-26313528 7.94e-01 80 chr22:23340314-23340394 7.26e-01 80 chr6:26701727-26701807 1.02e-01 1_[+3(8.98e-05)]_71 chr6:27518981-27519061 9.58e-01 80 chr1:145399261-145399341 1.01e-03 32_[+4(9.54e-06)]_40 chr17:73030596-73030676 5.97e-01 80 chr6:28442390-28442470 4.42e-01 80 chr17:37025617-37025697 8.46e-02 10_[+5(5.01e-05)]_62 chr18:729019-729099 8.54e-01 80 chr6:27526541-27526621 1.18e-01 80 chr17:8089600-8089680 1.21e-02 65_[+5(3.44e-05)]_7 chr13:93272112-93272192 6.48e-01 80 chr6:27059490-27059570 4.52e-01 80 chr15:60777325-60777405 7.91e-01 80 chr1:161736041-161736121 3.60e-01 80 chr19:4724692-4724772 5.40e-01 80 chr7:131091841-131091921 7.30e-01 80 chr6:68607968-68608048 8.19e-01 80 chr6:27559655-27559735 9.28e-01 80 chr6:26474754-26474834 1.87e-01 80 chr1:55741428-55741508 9.70e-01 80 chr15:93427885-93427965 6.94e-01 80 chr6:26286681-26286761 8.48e-03 58_[+5(6.07e-05)]_14 chr17:8023031-8023111 1.26e-01 80 chr6:27551397-27551477 9.89e-01 80 chr18:846699-846779 8.78e-01 80 chr2:12072369-12072449 5.73e-01 80 chr12:69723404-69723484 9.91e-01 80 chr6:28911468-28911548 1.81e-01 80 chr21:30374580-30374660 1.00e+00 80 chr6:26577288-26577368 3.84e-04 50_[+1(1.36e-05)]_2_[+3(9.78e-06)]_\ 12 chr6:28785112-28785192 6.42e-01 80 chr6:13661642-13661722 9.54e-01 80 chr6:27763713-27763793 3.03e-01 80 chr7:135764733-135764813 9.86e-01 80 chr6:26553678-26553758 3.32e-04 59_[+1(1.36e-05)]_1_[+3(9.78e-06)]_\ 4 chr7:106376735-106376815 1.00e+00 80 chr6:27263154-27263234 3.00e-01 80 chr3:3221885-3221965 9.99e-01 80 chr11:59327861-59327941 5.86e-01 80 chr2:70476203-70476283 6.53e-01 80 chr9:100718945-100719025 9.81e-01 80 chr6:28908764-28908844 7.24e-01 80 chr5:89952163-89952243 1.42e-01 80 chr5:173043731-173043811 7.60e-02 80 chr6:28949927-28950007 8.37e-01 80 chr1:204476165-204476245 3.19e-01 80 chr2:70471457-70471537 5.72e-01 80 chr19:1383469-1383549 5.94e-01 80 chr2:70143190-70143270 4.68e-01 80 chr6:26569025-26569105 7.60e-03 67_[+1(1.36e-05)]_5 chr14:21077549-21077629 6.79e-01 80 chr1:145397919-145397999 6.23e-02 5_[+4(2.28e-05)]_67 chr12:125424354-12542443 1.41e-03 [+5(1.22e-05)]_29_[+3(1.96e-05)]_35 chr6:147944816-147944896 8.00e-01 80 chr22:23308843-23308923 8.95e-01 80 chr6:28763822-28763902 5.64e-01 80 chr10:65222367-65222447 7.53e-01 80 chr6:28806201-28806281 3.61e-04 24_[+5(2.08e-05)]_40_[+2(1.34e-05)] chr6:28909420-28909500 4.68e-01 80 chr2:27273944-27274024 4.33e-01 80 chr6:26533187-26533267 6.45e-02 80 chr6:45413242-45413322 1.67e-01 80 chr16:12009904-12009984 7.79e-03 46_[+5(5.37e-05)]_26 chr19:45458279-45458359 6.52e-01 80 chr6:26334376-26334456 3.86e-01 80 chr19:56826325-56826405 6.99e-01 80 chr1:151138495-151138575 6.74e-02 80 chr3:160167180-160167260 2.40e-01 80 chr6:28831521-28831601 1.97e-01 80 chr10:22518468-22518548 3.53e-01 80 chr12:31886339-31886419 6.00e-01 80 chr6:147214893-147214973 9.83e-01 80 chr1:179849686-179849766 5.39e-01 80 chr18:1406906-1406986 8.90e-01 80 chr7:129806502-129806582 9.89e-01 80 chr1:161369542-161369622 5.28e-04 80 chr1:220050436-220050516 6.38e-01 80 chr1:142808390-142808470 9.77e-01 80 chr6:26556648-26556728 5.57e-01 80 chr6:27515608-27515688 4.86e-01 80 chr5:180600569-180600649 4.85e-02 80 chr3:33867325-33867405 8.39e-01 80 chr3:169489969-169490049 9.70e-01 80 chr12:98897991-98898071 5.20e-03 54_[+3(5.42e-05)]_18 chr6:36068092-36068172 9.64e-02 80 chr6:27344107-27344187 8.24e-01 80 chr15:26327437-26327517 5.71e-01 80 chr6:27779603-27779683 9.12e-01 80 chr6:32223925-32224005 9.14e-01 80 chr5:171433754-171433834 6.69e-02 80 chr1:12471245-12471325 9.74e-01 80 chr6:110501479-110501559 9.54e-01 80 chr18:1407651-1407731 9.71e-01 80 chr7:103255094-103255174 8.74e-01 80 chr12:96429757-96429837 7.52e-01 80 chr1:149680268-149680348 2.87e-02 1_[+4(9.54e-06)]_71 chr3:33817891-33817971 8.84e-01 80 chr1:167684760-167684840 4.30e-01 80 chr8:126348262-126348342 6.93e-01 80 chr1:222638317-222638397 4.70e-04 36_[+1(1.36e-05)]_2_[+3(4.03e-05)]_\ 26 chr7:130757314-130757394 9.80e-01 80 chr1:161510000-161510080 1.36e-01 80 chr11:59323850-59323930 9.53e-06 49_[+5(2.08e-05)]_1_[+1(1.36e-05)]_\ 2_[+3(9.78e-06)]_4 chr5:180649458-180649538 8.77e-03 80 chr6:28510977-28511057 1.00e+00 80 chr1:161397920-161398000 2.72e-01 80 chr1:185122626-185122706 8.15e-01 80 chr6:26595027-26595107 9.80e-01 80 chr8:26245002-26245082 7.13e-02 80 chr6:26322975-26323055 1.86e-01 80 chr7:139025367-139025447 5.56e-01 80 chr21:31030073-31030153 1.41e-01 80 chr6:27560669-27560749 3.88e-01 80 chr7:158989374-158989454 1.07e-02 80 chr1:212962963-212963043 8.17e-01 80 chr15:40886078-40886158 2.86e-01 80 chr12:94135366-94135446 5.76e-01 80 chr6:26554321-26554401 1.70e-05 26_[+5(3.44e-05)]_1_[+1(1.36e-05)]_\ 3_[+3(4.03e-05)]_26 chr2:174650566-174650646 9.64e-01 80 chr6:28921113-28921193 2.94e-01 80 chr1:67895909-67895989 2.49e-02 62_[+5(5.01e-05)]_10 chr3:169852451-169852531 7.72e-01 80 chr5:180645307-180645387 1.90e-01 80 chr6:126101444-126101524 3.86e-02 9_[+4(9.54e-06)]_63 chr1:78224381-78224461 9.80e-01 80 chr6:50968703-50968783 5.78e-01 80 chr1:223999388-223999468 9.73e-01 80 chr17:36373938-36374018 3.73e-01 80 chr20:32398929-32399009 1.12e-02 19_[+5(1.22e-05)]_53 chr17:73031161-73031241 1.76e-01 80 chr6:28626057-28626137 4.51e-02 9_[+2(1.34e-05)]_63 chr6:27300778-27300858 7.92e-04 24_[+5(9.14e-05)]_40_[+2(1.34e-05)] chr17:45693180-45693260 4.35e-01 80 chr6:27636342-27636422 5.66e-05 17_[+5(3.44e-05)]_1_[+1(1.36e-05)]_\ 46 chr6:27870732-27870812 7.01e-04 5_[+2(1.34e-05)]_[+4(2.28e-05)]_59 chr1:142830272-142830352 8.99e-01 80 chr1:246354958-246355038 2.22e-01 80 chr1:167683879-167683959 3.41e-02 80 chr6:126269855-126269935 9.35e-01 80 chr8:42697418-42697498 2.40e-01 80 chr15:65597125-65597205 1.00e+00 80 chr14:58706704-58706784 9.99e-01 80 chr6:27487246-27487326 8.65e-01 80 chr17:8130383-8130463 7.53e-01 80 chr1:145082371-145082451 7.07e-01 80 chr17:66016026-66016106 4.41e-02 80 chr21:27107514-27107594 2.70e-01 80 chr7:149388325-149388405 7.47e-01 80 chr11:17376452-17376532 1.26e-01 55_[+1(2.74e-05)]_17 chr1:45196649-45196729 8.71e-01 80 chr20:29634216-29634296 1.00e+00 80 chr2:232646298-232646378 5.34e-03 80 chr1:11968345-11968425 8.07e-01 80 chr6:143386732-143386812 1.00e+00 80 chr6:27302828-27302908 8.62e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************