******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:227473250-227473330 1.0000 80 chr13:19397230-19397310 1.0000 80 chr17:8029532-8029612 1.0000 80 chr18:68129408-68129488 1.0000 80 chr17:7308518-7308598 1.0000 80 chr19:35453921-35454001 1.0000 80 chr5:180497136-180497216 1.0000 80 chr13:28404158-28404238 1.0000 80 chrX:118544650-118544730 1.0000 80 chr17:8030151-8030231 1.0000 80 chr14:21150712-21150792 1.0000 80 chr2:145290972-145291052 1.0000 80 chr11:78316559-78316639 1.0000 80 chr19:7939449-7939529 1.0000 80 chr3:132736030-132736110 1.0000 80 chr2:61293662-61293742 1.0000 80 chr1:114940347-114940427 1.0000 80 chr8:23365234-23365314 1.0000 80 chr5:150428222-150428302 1.0000 80 chr6:139909576-139909656 1.0000 80 chr16:3182012-3182092 1.0000 80 chr20:22404231-22404311 1.0000 80 chrX:38801044-38801124 1.0000 80 chr21:15293898-15293978 1.0000 80 chr8:101804269-101804349 1.0000 80 chr18:32552810-32552890 1.0000 80 chr19:39470685-39470765 1.0000 80 chr20:49120909-49120989 1.0000 80 chr16:89574017-89574097 1.0000 80 chr12:83729632-83729712 1.0000 80 chr11:111956717-11195679 1.0000 80 chr12:109256514-10925659 1.0000 80 chr6:126656527-126656607 1.0000 80 chr6:150262815-150262895 1.0000 80 chr3:52567020-52567100 1.0000 80 chr4:1875209-1875289 1.0000 80 chr5:176981038-176981118 1.0000 80 chr1:31545326-31545406 1.0000 80 chr7:32674704-32674784 1.0000 80 chr17:80820697-80820777 1.0000 80 chr3:112530861-112530941 1.0000 80 chr22:19284538-19284618 1.0000 80 chr8:24857560-24857640 1.0000 80 chr21:40908185-40908265 1.0000 80 chr16:1429899-1429979 1.0000 80 chr16:46667238-46667318 1.0000 80 chr16:86794813-86794893 1.0000 80 chr7:116853128-116853208 1.0000 80 chr17:45820289-45820369 1.0000 80 chr10:73680634-73680714 1.0000 80 chr12:102819037-10281911 1.0000 80 chr12:31934961-31935041 1.0000 80 chr12:102831871-10283195 1.0000 80 chr9:136285594-136285674 1.0000 80 chr17:42706279-42706359 1.0000 80 chr6:150336908-150336988 1.0000 80 chr9:127532754-127532834 1.0000 80 chr6:42158718-42158798 1.0000 80 chr10:46762631-46762711 1.0000 80 chr4:1595708-1595788 1.0000 80 chr22:39151544-39151624 1.0000 80 chr10:75811952-75812032 1.0000 80 chr6:27768663-27768743 1.0000 80 chr18:23570608-23570688 1.0000 80 chr13:99711269-99711349 1.0000 80 chr19:42757694-42757774 1.0000 80 chr9:102582821-102582901 1.0000 80 chr6:27794212-27794292 1.0000 80 chr10:81664548-81664628 1.0000 80 chr19:1725434-1725514 1.0000 80 chr17:17942067-17942147 1.0000 80 chr5:68341208-68341288 1.0000 80 chr17:6478726-6478806 1.0000 80 chr14:101696649-10169672 1.0000 80 chr2:11019946-11020026 1.0000 80 chr12:110556317-11055639 1.0000 80 chr9:27441000-27441080 1.0000 80 chr15:43806607-43806687 1.0000 80 chr19:51611215-51611295 1.0000 80 chr12:47475087-47475167 1.0000 80 chr12:31771688-31771768 1.0000 80 chr9:33562362-33562442 1.0000 80 chr9:27462622-27462702 1.0000 80 chr6:37006513-37006593 1.0000 80 chr10:70884718-70884798 1.0000 80 chr19:23258218-23258298 1.0000 80 chr22:20177979-20178059 1.0000 80 chrX:18224938-18225018 1.0000 80 chr7:75368059-75368139 1.0000 80 chr12:6649681-6649761 1.0000 80 chrX:9325975-9326055 1.0000 80 chr12:102823623-10282370 1.0000 80 chr22:21056726-21056806 1.0000 80 chr19:41145609-41145689 1.0000 80 chr10:112261195-11226127 1.0000 80 chr10:13105015-13105095 1.0000 80 chr19:1203134-1203214 1.0000 80 chr20:1042611-1042691 1.0000 80 chr22:19620452-19620532 1.0000 80 chr19:51505500-51505580 1.0000 80 chr1:203103224-203103304 1.0000 80 chr16:46597039-46597119 1.0000 80 chr3:52568066-52568146 1.0000 80 chr12:2904054-2904134 1.0000 80 chr1:213582549-213582629 1.0000 80 chr13:21584978-21585058 1.0000 80 chr6:86390230-86390310 1.0000 80 chr2:32583250-32583330 1.0000 80 chr22:19654840-19654920 1.0000 80 chr6:43061738-43061818 1.0000 80 chr4:184320072-184320152 1.0000 80 chr20:47936094-47936174 1.0000 80 chr16:85762607-85762687 1.0000 80 chr1:76156426-76156506 1.0000 80 chr6:30290497-30290577 1.0000 80 chr3:49761761-49761841 1.0000 80 chr4:110317065-110317145 1.0000 80 chr20:61406301-61406381 1.0000 80 chr10:86080934-86081014 1.0000 80 chr17:37024600-37024680 1.0000 80 chr16:10407433-10407513 1.0000 80 chr9:136114378-136114458 1.0000 80 chr14:97230517-97230597 1.0000 80 chr7:149393589-149393669 1.0000 80 chr17:43129497-43129577 1.0000 80 chr2:130076424-130076504 1.0000 80 chr17:79375949-79376029 1.0000 80 chr11:67244282-67244362 1.0000 80 chr2:106286060-106286140 1.0000 80 chr6:150346996-150347076 1.0000 80 chr22:30304135-30304215 1.0000 80 chr18:711546-711626 1.0000 80 chr10:3826989-3827069 1.0000 80 chr5:38798126-38798206 1.0000 80 chr7:137910897-137910977 1.0000 80 chr22:30928173-30928253 1.0000 80 chr3:52568285-52568365 1.0000 80 chr16:3151505-3151585 1.0000 80 chr8:91251849-91251929 1.0000 80 chr2:219134618-219134698 1.0000 80 chr16:89558948-89559028 1.0000 80 chr13:96336311-96336391 1.0000 80 chr11:118978130-11897821 1.0000 80 chr14:92587699-92587779 1.0000 80 chr22:29479934-29480014 1.0000 80 chr2:112133117-112133197 1.0000 80 chr2:197230848-197230928 1.0000 80 chr11:102256260-10225634 1.0000 80 chr11:349475-349555 1.0000 80 chr15:67810877-67810957 1.0000 80 chr9:102860636-102860716 1.0000 80 chr6:123911237-123911317 1.0000 80 chr5:112250427-112250507 1.0000 80 chr7:135764448-135764528 1.0000 80 chr1:15614268-15614348 1.0000 80 chr19:17420568-17420648 1.0000 80 chr20:62151846-62151926 1.0000 80 chr12:1727852-1727932 1.0000 80 chr11:3663424-3663504 1.0000 80 chr19:40037343-40037423 1.0000 80 chr9:131465393-131465473 1.0000 80 chr20:32777684-32777764 1.0000 80 chr21:36261654-36261734 1.0000 80 chr17:17744982-17745062 1.0000 80 chr11:129820375-12982045 1.0000 80 chr14:58862415-58862495 1.0000 80 chr12:51611012-51611092 1.0000 80 chr16:1994325-1994405 1.0000 80 chr1:205735842-205735922 1.0000 80 chr22:36597888-36597968 1.0000 80 chr21:45905309-45905389 1.0000 80 chr22:37640315-37640395 1.0000 80 chr11:44797163-44797243 1.0000 80 chr16:58059491-58059571 1.0000 80 chr6:130068887-130068967 1.0000 80 chr8:2627605-2627685 1.0000 80 chr2:73296318-73296398 1.0000 80 chr10:25233836-25233916 1.0000 80 chr8:79428375-79428455 1.0000 80 chrX:24483046-24483126 1.0000 80 chr21:15972973-15973053 1.0000 80 chr1:149186354-149186434 1.0000 80 chr11:117923705-11792378 1.0000 80 chr15:89463911-89463991 1.0000 80 chr7:499312-499392 1.0000 80 chr2:63560598-63560678 1.0000 80 chr5:130518709-130518789 1.0000 80 chr11:60929866-60929946 1.0000 80 chr2:96823571-96823651 1.0000 80 chr8:145100916-145100996 1.0000 80 chr7:139498083-139498163 1.0000 80 chr12:117111651-11711173 1.0000 80 chr1:142704024-142704104 1.0000 80 chr1:94194428-94194508 1.0000 80 chr19:17873811-17873891 1.0000 80 chr4:140375509-140375589 1.0000 80 chr17:73761638-73761718 1.0000 80 chr14:38065274-38065354 1.0000 80 chr19:34656319-34656399 1.0000 80 chr8:144660803-144660883 1.0000 80 chr4:188982406-188982486 1.0000 80 chr1:115212574-115212654 1.0000 80 chr10:29431542-29431622 1.0000 80 chr5:55339567-55339647 1.0000 80 chr22:30752487-30752567 1.0000 80 chr4:48271563-48271643 1.0000 80 chr22:37415812-37415892 1.0000 80 chr19:10535004-10535084 1.0000 80 chr1:54750553-54750633 1.0000 80 chr19:47551251-47551331 1.0000 80 chr6:24659296-24659376 1.0000 80 chr4:108469495-108469575 1.0000 80 chr10:124897265-12489734 1.0000 80 chr19:33166433-33166513 1.0000 80 chr16:30662485-30662565 1.0000 80 chr8:142139671-142139751 1.0000 80 chr21:47645266-47645346 1.0000 80 chr13:114017819-11401789 1.0000 80 chrX:152605333-152605413 1.0000 80 chr4:138827250-138827330 1.0000 80 chr12:57872349-57872429 1.0000 80 chr6:13815631-13815711 1.0000 80 chr5:16936614-16936694 1.0000 80 chr20:42136978-42137058 1.0000 80 chr11:59521659-59521739 1.0000 80 chr16:68098859-68098939 1.0000 80 chr2:171571282-171571362 1.0000 80 chr12:113905420-11390550 1.0000 80 chr1:68177480-68177560 1.0000 80 chr7:2343300-2343380 1.0000 80 chr19:38908592-38908672 1.0000 80 chr18:7545891-7545971 1.0000 80 chr2:153276980-153277060 1.0000 80 chr4:7045945-7046025 1.0000 80 chr19:47194541-47194621 1.0000 80 chr4:53580928-53581008 1.0000 80 chr8:11654715-11654795 1.0000 80 chr17:27276550-27276630 1.0000 80 chr4:185570920-185571000 1.0000 80 chr17:7589427-7589507 1.0000 80 chr5:163787843-163787923 1.0000 80 chr1:55353087-55353167 1.0000 80 chr6:140469159-140469239 1.0000 80 chr22:50983592-50983672 1.0000 80 chrX:55187728-55187808 1.0000 80 chrX:129091578-129091658 1.0000 80 chr1:22138587-22138667 1.0000 80 chr5:70882367-70882447 1.0000 80 chr5:38379618-38379698 1.0000 80 chr1:93250577-93250657 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZBTB5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.225 C 0.274 G 0.281 T 0.22 Background letter frequencies (from file dataset with add-one prior applied): A 0.225 C 0.274 G 0.281 T 0.22 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CVCGGACC MEME-1 width = 8 sites = 36 llr = 314 E-value = 2.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CVCGGACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 23:::a:: pos.-specific C 72a:::aa probability G :4:aa::: matrix T 1::::::: bits 2.2 * 2.0 * *** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.6 bits) 0.9 ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGGACC consensus AA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCGGACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:113905420-11390550 4 5.07e-05 TTT CGCGGACC CGTGGGGCGA chr22:30752487-30752567 35 5.07e-05 ggggctgctc cgcggacc acttagagaa chr6:123911237-123911317 21 5.07e-05 acccccaggc cacggacc cattaggaac chr14:97230517-97230597 5 5.07e-05 ggag cgcggacc ctattgagaa chr4:110317065-110317145 22 5.07e-05 ctcacaggag cgcggacc ctactgtgaa chr22:19654840-19654920 9 5.07e-05 tccacccc cacggacc taggtgagga chr19:51611215-51611295 67 5.07e-05 GAAGAGAGGC CGCGGACC CCAGGG chr10:81664548-81664628 50 5.07e-05 TCCGGAGGCA CGCGGACC CGGTGGAACG chr22:39151544-39151624 70 5.07e-05 GGGCGCGGGC CGCGGACC CGG chr10:46762631-46762711 57 5.07e-05 GCCCCAGAGC CACGGACC CAACCGCCGC chr17:42706279-42706359 16 5.07e-05 gctccacccc cacggacc taggtgagga chr12:31934961-31935041 45 5.07e-05 gctccacccc cacggacc taggtgagga chr5:176981038-176981118 11 5.07e-05 GTCGCAGGAG CGCGGACC GAGCCTCGGC chr6:150262815-150262895 13 5.07e-05 GGGAGAGCGT CGCGGACC CAGGCGGGGA chr19:39470685-39470765 40 5.07e-05 cagataaatc cacggacc agattgagaa chr11:78316559-78316639 20 5.07e-05 gctccacccc cacggacc taggtgagga chr2:145290972-145291052 25 5.07e-05 acccccaggc cacggacc cgtgaggaac chr13:28404158-28404238 58 5.07e-05 CCGCAGGCCC CACGGACC CAGGAGAGGC chr4:48271563-48271643 16 7.81e-05 GTCCCTCCTT CCCGGACC GAAGAGGGGA chr1:149186354-149186434 35 7.81e-05 CTCACAGTGG CCCGGACC ACAGGGAAAT chr21:45905309-45905389 18 7.81e-05 gctccacccc cccggacc tgggtgagga chr20:62151846-62151926 15 7.81e-05 GGGCTGGGCT CCCGGACC CGGGCGCGGG chr19:17420568-17420648 51 7.81e-05 ACCTTCGACC CCCGGACC CTACCGAGAG chr16:85762607-85762687 20 7.81e-05 tacagaaggt cccggacc ccactgagaa chr5:70882367-70882447 45 1.20e-04 acaatgtggg agcggacc gagcagagct chr21:47645266-47645346 23 1.20e-04 cccgttgcca agcggacc caaccgtggt chr16:58059491-58059571 22 1.20e-04 GGGAAGCGTA AACGGACC GCCCACCTGT chr10:3826989-3827069 23 1.20e-04 GCCCAGGCCC AGCGGACC GCAGAGAGCA chr7:149393589-149393669 43 1.20e-04 catttgcata aacggacc ttatagagaa chr22:21056726-21056806 12 1.20e-04 TGATCCACCC AGCGGACC CAGGTGGGGG chr19:1725434-1725514 57 1.20e-04 TCCAGGATAC AGCGGACC CCGATGAAGC chr22:30304135-30304215 48 1.60e-04 GCTTTCCTTC TACGGACC TGGATGAGAA chr17:79375949-79376029 51 1.60e-04 TCCTCCCCCC TGCGGACC GAAGAGAACG chr4:1875209-1875289 29 1.60e-04 TGCTGAAGTG TGCGGACC CAAATGAAGC chr6:140469159-140469239 50 1.83e-04 tggatctcgc accggacc acaggtggaa chr10:124897265-12489734 23 2.05e-04 GGCCTCCTTG TCCGGACC CCGGAGGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCGGACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:113905420-11390550 5.1e-05 3_[+1]_69 chr22:30752487-30752567 5.1e-05 34_[+1]_38 chr6:123911237-123911317 5.1e-05 20_[+1]_52 chr14:97230517-97230597 5.1e-05 4_[+1]_68 chr4:110317065-110317145 5.1e-05 21_[+1]_51 chr22:19654840-19654920 5.1e-05 8_[+1]_64 chr19:51611215-51611295 5.1e-05 66_[+1]_6 chr10:81664548-81664628 5.1e-05 49_[+1]_23 chr22:39151544-39151624 5.1e-05 69_[+1]_3 chr10:46762631-46762711 5.1e-05 56_[+1]_16 chr17:42706279-42706359 5.1e-05 15_[+1]_57 chr12:31934961-31935041 5.1e-05 44_[+1]_28 chr5:176981038-176981118 5.1e-05 10_[+1]_62 chr6:150262815-150262895 5.1e-05 12_[+1]_60 chr19:39470685-39470765 5.1e-05 39_[+1]_33 chr11:78316559-78316639 5.1e-05 19_[+1]_53 chr2:145290972-145291052 5.1e-05 24_[+1]_48 chr13:28404158-28404238 5.1e-05 57_[+1]_15 chr4:48271563-48271643 7.8e-05 15_[+1]_57 chr1:149186354-149186434 7.8e-05 34_[+1]_38 chr21:45905309-45905389 7.8e-05 17_[+1]_55 chr20:62151846-62151926 7.8e-05 14_[+1]_58 chr19:17420568-17420648 7.8e-05 50_[+1]_22 chr16:85762607-85762687 7.8e-05 19_[+1]_53 chr5:70882367-70882447 0.00012 44_[+1]_28 chr21:47645266-47645346 0.00012 22_[+1]_50 chr16:58059491-58059571 0.00012 21_[+1]_51 chr10:3826989-3827069 0.00012 22_[+1]_50 chr7:149393589-149393669 0.00012 42_[+1]_30 chr22:21056726-21056806 0.00012 11_[+1]_61 chr19:1725434-1725514 0.00012 56_[+1]_16 chr22:30304135-30304215 0.00016 47_[+1]_25 chr17:79375949-79376029 0.00016 50_[+1]_22 chr4:1875209-1875289 0.00016 28_[+1]_44 chr6:140469159-140469239 0.00018 49_[+1]_23 chr10:124897265-12489734 0.0002 22_[+1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCGGACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CVCGGACC width=8 seqs=36 chr12:113905420-11390550 ( 4) CGCGGACC 1 chr22:30752487-30752567 ( 35) CGCGGACC 1 chr6:123911237-123911317 ( 21) CACGGACC 1 chr14:97230517-97230597 ( 5) CGCGGACC 1 chr4:110317065-110317145 ( 22) CGCGGACC 1 chr22:19654840-19654920 ( 9) CACGGACC 1 chr19:51611215-51611295 ( 67) CGCGGACC 1 chr10:81664548-81664628 ( 50) CGCGGACC 1 chr22:39151544-39151624 ( 70) CGCGGACC 1 chr10:46762631-46762711 ( 57) CACGGACC 1 chr17:42706279-42706359 ( 16) CACGGACC 1 chr12:31934961-31935041 ( 45) CACGGACC 1 chr5:176981038-176981118 ( 11) CGCGGACC 1 chr6:150262815-150262895 ( 13) CGCGGACC 1 chr19:39470685-39470765 ( 40) CACGGACC 1 chr11:78316559-78316639 ( 20) CACGGACC 1 chr2:145290972-145291052 ( 25) CACGGACC 1 chr13:28404158-28404238 ( 58) CACGGACC 1 chr4:48271563-48271643 ( 16) CCCGGACC 1 chr1:149186354-149186434 ( 35) CCCGGACC 1 chr21:45905309-45905389 ( 18) CCCGGACC 1 chr20:62151846-62151926 ( 15) CCCGGACC 1 chr19:17420568-17420648 ( 51) CCCGGACC 1 chr16:85762607-85762687 ( 20) CCCGGACC 1 chr5:70882367-70882447 ( 45) AGCGGACC 1 chr21:47645266-47645346 ( 23) AGCGGACC 1 chr16:58059491-58059571 ( 22) AACGGACC 1 chr10:3826989-3827069 ( 23) AGCGGACC 1 chr7:149393589-149393669 ( 43) AACGGACC 1 chr22:21056726-21056806 ( 12) AGCGGACC 1 chr19:1725434-1725514 ( 57) AGCGGACC 1 chr22:30304135-30304215 ( 48) TACGGACC 1 chr17:79375949-79376029 ( 51) TGCGGACC 1 chr4:1875209-1875289 ( 29) TGCGGACC 1 chr6:140469159-140469239 ( 50) ACCGGACC 1 chr10:124897265-12489734 ( 23) TCCGGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCGGACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.11739 E= 2.4e-010 -2 128 -1181 -99 57 -30 66 -1181 -1181 187 -1181 -1181 -1181 -1181 183 -1181 -1181 -1181 183 -1181 215 -1181 -1181 -1181 -1181 187 -1181 -1181 -1181 187 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCGGACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.4e-010 0.222222 0.666667 0.000000 0.111111 0.333333 0.222222 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVCGGACC MEME-1 regular expression -------------------------------------------------------------------------------- [CA][GAC]CGGACC -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TCYSRGAA MEME-2 width = 8 sites = 72 llr = 513 E-value = 4.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCYSRGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::125:89 pos.-specific C :a43:::: probability G :::44a2: matrix T a:521::1 bits 2.2 2.0 ** 1.7 ** * * 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 ** *** (10.3 bits) 0.9 ** *** 0.7 *** **** 0.4 *** **** 0.2 *** **** 0.0 -------- Multilevel TCTGAGAA consensus CCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYSRGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:112133117-112133197 34 1.19e-05 AATTGATCTT TCTGAGAA ATCATGTGCA chr16:10407433-10407513 42 1.19e-05 aaaaacaaat tctgagaa actgtcacag chr12:102823623-10282370 28 1.19e-05 GAATTTCCTT TCTGAGAA CTAGAGACTG chr12:102831871-10283195 47 1.19e-05 gattccatga tctgagaa aactaaagaa chr2:227473250-227473330 54 1.19e-05 TCTGATCTTT TCTGAGAA GCAGATTTTC chr2:153276980-153277060 45 5.33e-05 AAGGTCTTTC TCCGAGAA TTGTTGCTTA chrX:152605333-152605413 69 5.33e-05 AGGTCCTCTT TCTCAGAA GGTG chr21:47645266-47645346 1 5.33e-05 . tctgggaa gaggcccgtt chr4:140375509-140375589 49 5.33e-05 GGGGTGGATT TCCGAGAA CGAGCGGTGG chr16:58059491-58059571 9 5.33e-05 TCCTGCCG TCTGGGAA GCGTAAACGG chr12:1727852-1727932 73 5.33e-05 ATCTGCCATT TCTGGGAA chr9:33562362-33562442 48 5.33e-05 GATCTTGCAT TCTCAGAA ACCACGGTTT chr6:42158718-42158798 37 5.33e-05 CAGGACCATT TCTGGGAA ACGTCCAGCT chr6:150336908-150336988 35 5.33e-05 atatgggtat tctcagaa ctgctaggga chr3:52567020-52567100 41 5.33e-05 TCGAGGTGTG TCTGGGAA GTCCAACCGG chr1:68177480-68177560 42 7.22e-05 tcaTGGTCAT TCTTAGAA AAAGCTGTAC chrX:38801044-38801124 41 7.22e-05 TGAACCTAGT TCTAAGAA AAGATCAACT chr1:22138587-22138667 32 1.20e-04 TGGGTCCTCC TCCCAGAA GCCCTATGGC chr20:42136978-42137058 52 1.20e-04 CCCTCCCGAG TCCGGGAA GCAGCTGCGG chr1:149186354-149186434 9 1.20e-04 GTTCGGGG TCCCAGAA ACCGGGTTCT chr22:29479934-29480014 70 1.20e-04 tcatgagatt tccgggaa ggg chr6:37006513-37006593 58 1.20e-04 TGTGTGAACT TCTCGGAA AGAGCAGGTC chr19:51611215-51611295 52 1.20e-04 tAATAAGTGC TCCCAGAA GAGAGGCCGC chr3:132736030-132736110 47 1.20e-04 CACCCTCACT TCCCAGAA AATGGATCTC chr16:68098859-68098939 13 1.67e-04 GAGATCCAGT TCTTGGAA GAGGGTTCTT chr19:34656319-34656399 33 1.67e-04 atcgtgctgt tccaagaa gtgaagttag chr1:142704024-142704104 25 1.67e-04 AACGTTTTAT TCCAAGAA TCCTCTACTG chr5:130518709-130518789 18 1.67e-04 TTGATATGGT TCCAAGAA TTGATTCCTT chr22:36597888-36597968 45 1.67e-04 TGATTTTGGT TCCTAGAA AAACCCACAT chr17:17744982-17745062 30 1.67e-04 GAGACCTTTT TCTTGGAA AAACCACAGG chr22:19620452-19620532 1 1.67e-04 . tcttggaa aatgtaaggc chr10:112261195-11226127 22 1.67e-04 GATGACTCAT TCTAGGAA TTGGCTGCAG chr9:27462622-27462702 41 1.67e-04 GTCAATCCTT TCTTGGAA AAGTCTTAAA chr4:1875209-1875289 58 1.67e-04 TTAAGCAGAG TCCTAGAA TGAGTCAGGA chr18:68129408-68129488 49 1.67e-04 GGCTTTCTCC TCTAGGAA GGCGTGTTCA chr5:38379618-38379698 73 2.09e-04 taagagaagt tcagagaa chr2:197230848-197230928 10 2.09e-04 aaactgagc tcagagaa ttccaggaac chr18:23570608-23570688 63 2.09e-04 GGCGAGGTAT TCAGAGAA AACGATCCTT chr6:139909576-139909656 43 2.09e-04 TAGGTTTATC TCTGTGAA AAGATCACTT chr5:150428222-150428302 41 2.09e-04 CTGAGGCAGC TCAGAGAA CCCAAGGGAG chr19:1203134-1203214 32 2.24e-04 TCTGTGGGAC TCTGAGGA AAAGCTCGCA chr12:57872349-57872429 35 2.53e-04 GCTTGGTCCT TCCTGGAA AGGCTTCAGA chr4:108469495-108469575 47 2.53e-04 GAATCAGGTT TCCAGGAA GCTCAGCTTG chr1:76156426-76156506 57 2.53e-04 ttcacttttt tccaggaa ttttcatgaa chr13:19397230-19397310 3 2.53e-04 AT TCCAGGAA TCCTCTACTG chr7:2343300-2343380 4 3.18e-04 tgc tctctgaa acatgtgctg chr2:63560598-63560678 30 3.18e-04 caacctgttc tctctgaa gtccgctatc chr19:40037343-40037423 9 3.18e-04 cttgtagc tctgagat aggaggtggg chr3:112530861-112530941 70 3.18e-04 GGCAGTAACA TCTGAGAT TAA chr17:37024600-37024680 23 3.69e-04 TTCCCCGGGG TCCGAGGA ATGACACAAC chr17:6478726-6478806 13 3.69e-04 GGTGGGAGAT TCTGGGGA GCCAAGCCGA chr1:54750553-54750633 31 4.07e-04 GGTCCACAGT TCTTTGAA TGCAACGGCC chr8:91251849-91251929 55 4.07e-04 aatgcaggta tcatagaa gagtaaaaac chr12:102819037-10281911 11 4.07e-04 TGTTCTCTTT TCTATGAA CTGCATGTCA chr5:163787843-163787923 26 5.00e-04 GCAGCCAACT TCCCTGAA TAGAAAACCA chr18:711546-711626 43 5.00e-04 GGGAACAGGC TCCCTGAA AACCCTGCAC chr19:39470685-39470765 27 5.00e-04 aagctgcaag tctcagat aaatccacgg chr16:89558948-89559028 29 5.60e-04 gcttcaaact tccgggga tcaagtgatc chr6:86390230-86390310 56 5.60e-04 ttcactgcaa tctcggga tcaagtgatc chr17:45820289-45820369 71 5.60e-04 CTTACGTCCC TCTCGGGA CA chr20:49120909-49120989 53 5.60e-04 CTGTGCTATC TCCCAGGA AGAAGATCAG chr16:85762607-85762687 30 6.96e-04 cccggacccc actgagaa ccaTGCAGCA chr12:31771688-31771768 15 6.96e-04 aataatgagg tcctagga gaaacctagg chr19:51505500-51505580 24 7.43e-04 CCCTGAGAGG TCCGGGAT CTGGGAGGGC chr2:61293662-61293742 51 7.43e-04 TTCTTCCCGG TCCGGGAT GACTCGGTGT chr5:180497136-180497216 22 7.77e-04 gtccgcctgg tcccggga cttttatagg chr13:96336311-96336391 53 8.07e-04 tttggaggac tcagagga agacaggaag chr1:31545326-31545406 15 8.07e-04 tggggcccaa tcagagga aagtacacca chr19:47194541-47194621 22 8.53e-04 TCAATCAGAA TCTAGGAT CTAGCTCTGT chr8:2627605-2627685 23 9.32e-04 GCAGGAGCTT ACTGGGAA TAGCTGATCT chr14:21150712-21150792 61 1.09e-03 tgcctgatga tctgaggt ggaacagttt chr8:144660803-144660883 71 1.18e-03 ACCCCCACCG ACCCAGAA GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYSRGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:112133117-112133197 1.2e-05 33_[+2]_39 chr16:10407433-10407513 1.2e-05 41_[+2]_31 chr12:102823623-10282370 1.2e-05 27_[+2]_45 chr12:102831871-10283195 1.2e-05 46_[+2]_26 chr2:227473250-227473330 1.2e-05 53_[+2]_19 chr2:153276980-153277060 5.3e-05 44_[+2]_28 chrX:152605333-152605413 5.3e-05 68_[+2]_4 chr21:47645266-47645346 5.3e-05 [+2]_72 chr4:140375509-140375589 5.3e-05 48_[+2]_24 chr16:58059491-58059571 5.3e-05 8_[+2]_64 chr12:1727852-1727932 5.3e-05 72_[+2] chr9:33562362-33562442 5.3e-05 47_[+2]_25 chr6:42158718-42158798 5.3e-05 36_[+2]_36 chr6:150336908-150336988 5.3e-05 34_[+2]_38 chr3:52567020-52567100 5.3e-05 40_[+2]_32 chr1:68177480-68177560 7.2e-05 41_[+2]_31 chrX:38801044-38801124 7.2e-05 40_[+2]_32 chr1:22138587-22138667 0.00012 31_[+2]_41 chr20:42136978-42137058 0.00012 51_[+2]_21 chr1:149186354-149186434 0.00012 8_[+2]_64 chr22:29479934-29480014 0.00012 69_[+2]_3 chr6:37006513-37006593 0.00012 57_[+2]_15 chr19:51611215-51611295 0.00012 51_[+2]_21 chr3:132736030-132736110 0.00012 46_[+2]_26 chr16:68098859-68098939 0.00017 12_[+2]_60 chr19:34656319-34656399 0.00017 32_[+2]_40 chr1:142704024-142704104 0.00017 24_[+2]_48 chr5:130518709-130518789 0.00017 17_[+2]_55 chr22:36597888-36597968 0.00017 44_[+2]_28 chr17:17744982-17745062 0.00017 29_[+2]_43 chr22:19620452-19620532 0.00017 [+2]_72 chr10:112261195-11226127 0.00017 21_[+2]_51 chr9:27462622-27462702 0.00017 40_[+2]_32 chr4:1875209-1875289 0.00017 57_[+2]_15 chr18:68129408-68129488 0.00017 48_[+2]_24 chr5:38379618-38379698 0.00021 72_[+2] chr2:197230848-197230928 0.00021 9_[+2]_63 chr18:23570608-23570688 0.00021 62_[+2]_10 chr6:139909576-139909656 0.00021 42_[+2]_30 chr5:150428222-150428302 0.00021 40_[+2]_32 chr19:1203134-1203214 0.00022 31_[+2]_41 chr12:57872349-57872429 0.00025 34_[+2]_38 chr4:108469495-108469575 0.00025 46_[+2]_26 chr1:76156426-76156506 0.00025 56_[+2]_16 chr13:19397230-19397310 0.00025 2_[+2]_70 chr7:2343300-2343380 0.00032 3_[+2]_69 chr2:63560598-63560678 0.00032 29_[+2]_43 chr19:40037343-40037423 0.00032 8_[+2]_64 chr3:112530861-112530941 0.00032 69_[+2]_3 chr17:37024600-37024680 0.00037 22_[+2]_50 chr17:6478726-6478806 0.00037 12_[+2]_60 chr1:54750553-54750633 0.00041 30_[+2]_42 chr8:91251849-91251929 0.00041 54_[+2]_18 chr12:102819037-10281911 0.00041 10_[+2]_62 chr5:163787843-163787923 0.0005 25_[+2]_47 chr18:711546-711626 0.0005 42_[+2]_30 chr19:39470685-39470765 0.0005 26_[+2]_46 chr16:89558948-89559028 0.00056 28_[+2]_44 chr6:86390230-86390310 0.00056 55_[+2]_17 chr17:45820289-45820369 0.00056 70_[+2]_2 chr20:49120909-49120989 0.00056 52_[+2]_20 chr16:85762607-85762687 0.0007 29_[+2]_43 chr12:31771688-31771768 0.0007 14_[+2]_58 chr19:51505500-51505580 0.00074 23_[+2]_49 chr2:61293662-61293742 0.00074 50_[+2]_22 chr5:180497136-180497216 0.00078 21_[+2]_51 chr13:96336311-96336391 0.00081 52_[+2]_20 chr1:31545326-31545406 0.00081 14_[+2]_58 chr19:47194541-47194621 0.00085 21_[+2]_51 chr8:2627605-2627685 0.00093 22_[+2]_50 chr14:21150712-21150792 0.0011 60_[+2]_12 chr8:144660803-144660883 0.0012 70_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYSRGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCYSRGAA width=8 seqs=72 chr2:112133117-112133197 ( 34) TCTGAGAA 1 chr16:10407433-10407513 ( 42) TCTGAGAA 1 chr12:102823623-10282370 ( 28) TCTGAGAA 1 chr12:102831871-10283195 ( 47) TCTGAGAA 1 chr2:227473250-227473330 ( 54) TCTGAGAA 1 chr2:153276980-153277060 ( 45) TCCGAGAA 1 chrX:152605333-152605413 ( 69) TCTCAGAA 1 chr21:47645266-47645346 ( 1) TCTGGGAA 1 chr4:140375509-140375589 ( 49) TCCGAGAA 1 chr16:58059491-58059571 ( 9) TCTGGGAA 1 chr12:1727852-1727932 ( 73) TCTGGGAA 1 chr9:33562362-33562442 ( 48) TCTCAGAA 1 chr6:42158718-42158798 ( 37) TCTGGGAA 1 chr6:150336908-150336988 ( 35) TCTCAGAA 1 chr3:52567020-52567100 ( 41) TCTGGGAA 1 chr1:68177480-68177560 ( 42) TCTTAGAA 1 chrX:38801044-38801124 ( 41) TCTAAGAA 1 chr1:22138587-22138667 ( 32) TCCCAGAA 1 chr20:42136978-42137058 ( 52) TCCGGGAA 1 chr1:149186354-149186434 ( 9) TCCCAGAA 1 chr22:29479934-29480014 ( 70) TCCGGGAA 1 chr6:37006513-37006593 ( 58) TCTCGGAA 1 chr19:51611215-51611295 ( 52) TCCCAGAA 1 chr3:132736030-132736110 ( 47) TCCCAGAA 1 chr16:68098859-68098939 ( 13) TCTTGGAA 1 chr19:34656319-34656399 ( 33) TCCAAGAA 1 chr1:142704024-142704104 ( 25) TCCAAGAA 1 chr5:130518709-130518789 ( 18) TCCAAGAA 1 chr22:36597888-36597968 ( 45) TCCTAGAA 1 chr17:17744982-17745062 ( 30) TCTTGGAA 1 chr22:19620452-19620532 ( 1) TCTTGGAA 1 chr10:112261195-11226127 ( 22) TCTAGGAA 1 chr9:27462622-27462702 ( 41) TCTTGGAA 1 chr4:1875209-1875289 ( 58) TCCTAGAA 1 chr18:68129408-68129488 ( 49) TCTAGGAA 1 chr5:38379618-38379698 ( 73) TCAGAGAA 1 chr2:197230848-197230928 ( 10) TCAGAGAA 1 chr18:23570608-23570688 ( 63) TCAGAGAA 1 chr6:139909576-139909656 ( 43) TCTGTGAA 1 chr5:150428222-150428302 ( 41) TCAGAGAA 1 chr19:1203134-1203214 ( 32) TCTGAGGA 1 chr12:57872349-57872429 ( 35) TCCTGGAA 1 chr4:108469495-108469575 ( 47) TCCAGGAA 1 chr1:76156426-76156506 ( 57) TCCAGGAA 1 chr13:19397230-19397310 ( 3) TCCAGGAA 1 chr7:2343300-2343380 ( 4) TCTCTGAA 1 chr2:63560598-63560678 ( 30) TCTCTGAA 1 chr19:40037343-40037423 ( 9) TCTGAGAT 1 chr3:112530861-112530941 ( 70) TCTGAGAT 1 chr17:37024600-37024680 ( 23) TCCGAGGA 1 chr17:6478726-6478806 ( 13) TCTGGGGA 1 chr1:54750553-54750633 ( 31) TCTTTGAA 1 chr8:91251849-91251929 ( 55) TCATAGAA 1 chr12:102819037-10281911 ( 11) TCTATGAA 1 chr5:163787843-163787923 ( 26) TCCCTGAA 1 chr18:711546-711626 ( 43) TCCCTGAA 1 chr19:39470685-39470765 ( 27) TCTCAGAT 1 chr16:89558948-89559028 ( 29) TCCGGGGA 1 chr6:86390230-86390310 ( 56) TCTCGGGA 1 chr17:45820289-45820369 ( 71) TCTCGGGA 1 chr20:49120909-49120989 ( 53) TCCCAGGA 1 chr16:85762607-85762687 ( 30) ACTGAGAA 1 chr12:31771688-31771768 ( 15) TCCTAGGA 1 chr19:51505500-51505580 ( 24) TCCGGGAT 1 chr2:61293662-61293742 ( 51) TCCGGGAT 1 chr5:180497136-180497216 ( 22) TCCCGGGA 1 chr13:96336311-96336391 ( 53) TCAGAGGA 1 chr1:31545326-31545406 ( 15) TCAGAGGA 1 chr19:47194541-47194621 ( 22) TCTAGGAT 1 chr8:2627605-2627685 ( 23) ACTGGGAA 1 chr14:21150712-21150792 ( 61) TCTGAGGT 1 chr8:144660803-144660883 ( 71) ACCCAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYSRGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.11479 E= 4.9e-006 -243 -1281 -1281 212 -1281 187 -1281 -1281 -121 45 -1281 126 -56 -13 66 -53 123 -1281 42 -118 -1281 -1281 183 -1281 189 -1281 -75 -1281 201 -1281 -1281 -118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYSRGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 4.9e-006 0.041667 0.000000 0.000000 0.958333 0.000000 1.000000 0.000000 0.000000 0.097222 0.375000 0.000000 0.527778 0.152778 0.250000 0.444444 0.152778 0.527778 0.000000 0.375000 0.097222 0.000000 0.000000 1.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.902778 0.000000 0.000000 0.097222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYSRGAA MEME-2 regular expression -------------------------------------------------------------------------------- TC[TC][GC][AG]GAA -------------------------------------------------------------------------------- Time 8.93 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGTCCTC MEME-3 width = 8 sites = 23 llr = 211 E-value = 1.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGTCCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C a:::a73a probability G ::a::::: matrix T :7:a:37: bits 2.2 * 2.0 * ** * 1.7 * *** * 1.5 * *** * Relative 1.3 ***** * Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGTCCTC consensus A TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTCCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:94194428-94194508 39 1.69e-05 aaaaaaatgc ctgtcctc acttaggtcc chr7:135764448-135764528 5 1.69e-05 caag ctgtcctc tttatgagga chr11:102256260-10225634 26 1.69e-05 acaaaaatgc ctgtcctc acctaggtcc chr22:19620452-19620532 28 1.69e-05 caggaaatgc ctgtcctc acttaggtcc chr14:101696649-10169672 20 1.69e-05 caggaaatgc ctgtcctc atctaggtcc chr10:73680634-73680714 44 1.69e-05 ggagtcgaag ctgtcctc ctgtgctgag chr17:45820289-45820369 5 1.69e-05 TAGC CTGTCCTC TGCTGAGTCC chr22:19284538-19284618 28 1.69e-05 cagaaaatgc ctgtcctc acctaggtcc chr17:80820697-80820777 49 1.69e-05 GGCCAGGTGT CTGTCCTC TCACGCGTCC chr20:32777684-32777764 10 4.77e-05 AAAGGATGC CTGTCTTC CCAGTTGGGA chr22:21056726-21056806 47 4.77e-05 CAGGACTTCC CAGTCCTC AATCATGAGC chr19:23258218-23258298 68 4.77e-05 CCGCCGACCT CAGTCCTC TCTGG chr19:35453921-35454001 9 4.77e-05 tctacctc cagtcctc actctggtcc chr11:3663424-3663504 43 6.87e-05 GGGCGCTGCG CTGTCCCC GGAGGAGTCC chr5:38798126-38798206 37 6.87e-05 gcaggagtgc ctgtcccc acctaggtcc chr19:51505500-51505580 9 6.87e-05 CCCGCCCG CTGTCCCC TGAGAGGTCC chr19:1203134-1203214 66 6.87e-05 AGATGCTGTT CTGTCCCC ATGGGTA chr5:38379618-38379698 48 8.25e-05 tttggaggat cagtcttc aggcagataa chr20:61406301-61406381 14 8.25e-05 CCGCCCCCGC CAGTCTTC CACTTGGTCC chr6:126656527-126656607 22 8.25e-05 ggcaaggaaa cagtcttc cctagagtcc chr19:10535004-10535084 66 1.21e-04 TCGCTGGTCT CTGTCTCC ACTTGGG chr11:118978130-11897821 3 1.21e-04 AC CAGTCCCC TCCAGGGTCC chr3:112530861-112530941 1 1.21e-04 . CTGTCTCC CACACGGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTCCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:94194428-94194508 1.7e-05 38_[+3]_34 chr7:135764448-135764528 1.7e-05 4_[+3]_68 chr11:102256260-10225634 1.7e-05 25_[+3]_47 chr22:19620452-19620532 1.7e-05 27_[+3]_45 chr14:101696649-10169672 1.7e-05 19_[+3]_53 chr10:73680634-73680714 1.7e-05 43_[+3]_29 chr17:45820289-45820369 1.7e-05 4_[+3]_68 chr22:19284538-19284618 1.7e-05 27_[+3]_45 chr17:80820697-80820777 1.7e-05 48_[+3]_24 chr20:32777684-32777764 4.8e-05 9_[+3]_63 chr22:21056726-21056806 4.8e-05 46_[+3]_26 chr19:23258218-23258298 4.8e-05 67_[+3]_5 chr19:35453921-35454001 4.8e-05 8_[+3]_64 chr11:3663424-3663504 6.9e-05 42_[+3]_30 chr5:38798126-38798206 6.9e-05 36_[+3]_36 chr19:51505500-51505580 6.9e-05 8_[+3]_64 chr19:1203134-1203214 6.9e-05 65_[+3]_7 chr5:38379618-38379698 8.3e-05 47_[+3]_25 chr20:61406301-61406381 8.3e-05 13_[+3]_59 chr6:126656527-126656607 8.3e-05 21_[+3]_51 chr19:10535004-10535084 0.00012 65_[+3]_7 chr11:118978130-11897821 0.00012 2_[+3]_70 chr3:112530861-112530941 0.00012 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTCCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGTCCTC width=8 seqs=23 chr1:94194428-94194508 ( 39) CTGTCCTC 1 chr7:135764448-135764528 ( 5) CTGTCCTC 1 chr11:102256260-10225634 ( 26) CTGTCCTC 1 chr22:19620452-19620532 ( 28) CTGTCCTC 1 chr14:101696649-10169672 ( 20) CTGTCCTC 1 chr10:73680634-73680714 ( 44) CTGTCCTC 1 chr17:45820289-45820369 ( 5) CTGTCCTC 1 chr22:19284538-19284618 ( 28) CTGTCCTC 1 chr17:80820697-80820777 ( 49) CTGTCCTC 1 chr20:32777684-32777764 ( 10) CTGTCTTC 1 chr22:21056726-21056806 ( 47) CAGTCCTC 1 chr19:23258218-23258298 ( 68) CAGTCCTC 1 chr19:35453921-35454001 ( 9) CAGTCCTC 1 chr11:3663424-3663504 ( 43) CTGTCCCC 1 chr5:38798126-38798206 ( 37) CTGTCCCC 1 chr19:51505500-51505580 ( 9) CTGTCCCC 1 chr19:1203134-1203214 ( 66) CTGTCCCC 1 chr5:38379618-38379698 ( 48) CAGTCTTC 1 chr20:61406301-61406381 ( 14) CAGTCTTC 1 chr6:126656527-126656607 ( 22) CAGTCTTC 1 chr19:10535004-10535084 ( 66) CTGTCTCC 1 chr11:118978130-11897821 ( 3) CAGTCCCC 1 chr3:112530861-112530941 ( 1) CTGTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTCCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 1.6e-001 -1117 187 -1117 -1117 44 -1117 -1117 166 -1117 -1117 183 -1117 -1117 -1117 -1117 218 -1117 187 -1117 -1117 -1117 143 -1117 24 -1117 15 -1117 166 -1117 187 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTCCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.6e-001 0.000000 1.000000 0.000000 0.000000 0.304348 0.000000 0.000000 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.739130 0.000000 0.260870 0.000000 0.304348 0.000000 0.695652 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTCCTC MEME-3 regular expression -------------------------------------------------------------------------------- C[TA]GTC[CT][TC]C -------------------------------------------------------------------------------- Time 12.63 secs. ******************************************************************************** ******************************************************************************** MOTIF YKDGGTCC MEME-4 width = 8 sites = 53 llr = 406 E-value = 6.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif YKDGGTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :12::::: pos.-specific C 52::::aa probability G :34aa::: matrix T 544::a:: bits 2.2 * 2.0 *** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.1 bits) 0.9 * ***** 0.7 * ***** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel CTTGGTCC consensus TGG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKDGGTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:137910897-137910977 16 1.39e-05 GTGGCCTCTG TTTGGTCC TCCTGGACTT chr9:136285594-136285674 33 1.39e-05 aggttcccac tttggtcc acttatgcaa chr3:52567020-52567100 66 1.39e-05 CGGTGTCCCC TTTGGTCC GGCCGTC chr12:57872349-57872429 26 3.12e-05 GGATCTTCCG CTTGGTCC TTCCTGGAAA chr20:61406301-61406381 24 3.12e-05 CAGTCTTCCA CTTGGTCC CTGTGAGGAC chr16:3182012-3182092 8 3.12e-05 TCCTCac cttggtcc ggctcctgcc chr19:1203134-1203214 8 4.89e-05 GTCTCTG TTGGGTCC GGGTGCTCTG chr12:31771688-31771768 50 4.89e-05 ctgctctctg ttgggtcc agttggtttt chrX:55187728-55187808 4 1.03e-04 CCT CTGGGTCC GCCGCAGGCT chr4:138827250-138827330 51 1.03e-04 ctgagccctg tgtggtcc ggtgttaaga chr10:29431542-29431622 2 1.03e-04 g tgtggtcc ctggctaggg chr1:94194428-94194508 49 1.03e-04 ctgtcctcac ttaggtcc gtgggggtgg chr2:96823571-96823651 33 1.03e-04 AAGTTCCCTG CTGGGTCC AGGGCTGGGA chr12:51611012-51611092 46 1.03e-04 GAGCGTCCCC TGTGGTCC GCACCCCACA chr2:219134618-219134698 71 1.03e-04 CAGTTCTCAC CTGGGTCC GG chr6:150346996-150347076 19 1.03e-04 TTGTCCCCGC CTGGGTCC GCGGCACTCT chr20:47936094-47936174 66 1.03e-04 GAAGTCCATC TGTGGTCC GCGTGCT chr22:19620452-19620532 38 1.03e-04 ctgtcctcac ttaggtcc gtgggggtgg chr19:41145609-41145689 24 1.03e-04 aagtcctcac tgtggtcc agcagactct chr10:75811952-75812032 20 1.03e-04 tagtcctcta tgtggtcc agtgtccacg chr12:31934961-31935041 18 1.03e-04 tagagaaagg tgtggtcc ctgcctaggg chr8:101804269-101804349 50 1.03e-04 GTGGCTCCGA TGTGGTCC GCTGAAAGTG chr17:73761638-73761718 23 1.43e-04 AAGGGATCCC CTAGGTCC CCAGGGCCAG chr11:102256260-10225634 36 1.43e-04 ctgtcctcac ctaggtcc gtggggttgg chr5:38798126-38798206 47 1.43e-04 ctgtccccac ctaggtcc gtgggggtag chr14:101696649-10169672 30 1.43e-04 ctgtcctcat ctaggtcc gtgggggtgg chr22:19284538-19284618 38 1.43e-04 ctgtcctcac ctaggtcc gtggggggtg chrX:129091578-129091658 37 1.83e-04 CGGACTTCCC TGGGGTCC GTTTCGGGGG chr1:55353087-55353167 6 1.83e-04 GCCGG TGGGGTCC GCTGCGAATA chr19:7939449-7939529 68 1.83e-04 AGCAAATCCC TGGGGTCC TCCAC chr19:35453921-35454001 19 1.83e-04 cagtcctcac tctggtcc ggccagccgc chr1:93250577-93250657 57 2.65e-04 CTGGTTCCTC CGGGGTCC GGCCCGGCCG chr12:113905420-11390550 41 2.65e-04 ACTTGGGCTT CCTGGTCC CCGGCTCGCC chr8:142139671-142139751 24 2.65e-04 CTGGTTTCCT CCTGGTCC GCCTGTCTGT chr3:52568285-52568365 10 2.65e-04 CTCCTTTCC CGGGGTCC TGGTCCCCGG chr7:75368059-75368139 41 2.65e-04 AGGGATGCCC CGGGGTCC CCCGTCCTCA chr13:99711269-99711349 19 2.65e-04 cagtctcctg tgaggtcc tctctccact chr17:45820289-45820369 37 2.65e-04 CCCTTCCCTG CCTGGTCC TCCCCCTGTG chr22:20177979-20178059 15 2.82e-04 tagaggaagg catggtcc ctggctaggg chr12:47475087-47475167 58 2.82e-04 TTGTTTCCTA CATGGTCC GTGAGTCATT chr9:27441000-27441080 27 3.45e-04 cagttcacaa tagggtcc gtgctcccat chr11:117923705-11792378 36 3.90e-04 tagctcacag ccgggtcc ggtggctcac chr19:17420568-17420648 8 3.90e-04 GGTCCCC TCAGGTCC GGCCCGCCCC chr4:184320072-184320152 6 3.90e-04 GTCTC CCGGGTCC GCCGCGGCCG chr19:23258218-23258298 52 3.90e-04 CAGTCCGCTC CCGGGTCC GCCGACCTCA chr7:116853128-116853208 48 3.90e-04 CAGCTCCCTC TCAGGTCC GCTGGCCATG chr3:112530861-112530941 22 3.90e-04 ACGGCTTCAC TCAGGTCC GCGGAAGTGT chr19:33166433-33166513 42 4.28e-04 CTGTCGCCGA cagggtcc gggagtcagt chr11:118978130-11897821 13 4.28e-04 CAGTCCCCTC CAGGGTCC GGCGGGGCCC chr11:111956717-11195679 22 4.28e-04 CAGTTCTCTC TAAGGTCC TCAAGGATAG chr8:23365234-23365314 54 4.28e-04 AGGTCTCCTC CAGGGTCC GCCATTCATT chr2:130076424-130076504 11 4.82e-04 gtgcgtgctg attggtcc acgggcagcc chr16:46667238-46667318 2 4.82e-04 g attggtcc atgagtggcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKDGGTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:137910897-137910977 1.4e-05 15_[+4]_57 chr9:136285594-136285674 1.4e-05 32_[+4]_40 chr3:52567020-52567100 1.4e-05 65_[+4]_7 chr12:57872349-57872429 3.1e-05 25_[+4]_47 chr20:61406301-61406381 3.1e-05 23_[+4]_49 chr16:3182012-3182092 3.1e-05 7_[+4]_65 chr19:1203134-1203214 4.9e-05 7_[+4]_65 chr12:31771688-31771768 4.9e-05 49_[+4]_23 chrX:55187728-55187808 0.0001 3_[+4]_69 chr4:138827250-138827330 0.0001 50_[+4]_22 chr10:29431542-29431622 0.0001 1_[+4]_71 chr1:94194428-94194508 0.0001 48_[+4]_24 chr2:96823571-96823651 0.0001 32_[+4]_40 chr12:51611012-51611092 0.0001 45_[+4]_27 chr2:219134618-219134698 0.0001 70_[+4]_2 chr6:150346996-150347076 0.0001 18_[+4]_54 chr20:47936094-47936174 0.0001 65_[+4]_7 chr22:19620452-19620532 0.0001 37_[+4]_35 chr19:41145609-41145689 0.0001 23_[+4]_49 chr10:75811952-75812032 0.0001 19_[+4]_53 chr12:31934961-31935041 0.0001 17_[+4]_55 chr8:101804269-101804349 0.0001 49_[+4]_23 chr17:73761638-73761718 0.00014 22_[+4]_50 chr11:102256260-10225634 0.00014 35_[+4]_37 chr5:38798126-38798206 0.00014 46_[+4]_26 chr14:101696649-10169672 0.00014 29_[+4]_43 chr22:19284538-19284618 0.00014 37_[+4]_35 chrX:129091578-129091658 0.00018 36_[+4]_36 chr1:55353087-55353167 0.00018 5_[+4]_67 chr19:7939449-7939529 0.00018 67_[+4]_5 chr19:35453921-35454001 0.00018 18_[+4]_54 chr1:93250577-93250657 0.00026 56_[+4]_16 chr12:113905420-11390550 0.00026 40_[+4]_32 chr8:142139671-142139751 0.00026 23_[+4]_49 chr3:52568285-52568365 0.00026 9_[+4]_63 chr7:75368059-75368139 0.00026 40_[+4]_32 chr13:99711269-99711349 0.00026 18_[+4]_54 chr17:45820289-45820369 0.00026 36_[+4]_36 chr22:20177979-20178059 0.00028 14_[+4]_58 chr12:47475087-47475167 0.00028 57_[+4]_15 chr9:27441000-27441080 0.00035 26_[+4]_46 chr11:117923705-11792378 0.00039 35_[+4]_37 chr19:17420568-17420648 0.00039 7_[+4]_65 chr4:184320072-184320152 0.00039 5_[+4]_67 chr19:23258218-23258298 0.00039 51_[+4]_21 chr7:116853128-116853208 0.00039 47_[+4]_25 chr3:112530861-112530941 0.00039 21_[+4]_51 chr19:33166433-33166513 0.00043 41_[+4]_31 chr11:118978130-11897821 0.00043 12_[+4]_60 chr11:111956717-11195679 0.00043 21_[+4]_51 chr8:23365234-23365314 0.00043 53_[+4]_19 chr2:130076424-130076504 0.00048 10_[+4]_62 chr16:46667238-46667318 0.00048 1_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKDGGTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YKDGGTCC width=8 seqs=53 chr7:137910897-137910977 ( 16) TTTGGTCC 1 chr9:136285594-136285674 ( 33) TTTGGTCC 1 chr3:52567020-52567100 ( 66) TTTGGTCC 1 chr12:57872349-57872429 ( 26) CTTGGTCC 1 chr20:61406301-61406381 ( 24) CTTGGTCC 1 chr16:3182012-3182092 ( 8) CTTGGTCC 1 chr19:1203134-1203214 ( 8) TTGGGTCC 1 chr12:31771688-31771768 ( 50) TTGGGTCC 1 chrX:55187728-55187808 ( 4) CTGGGTCC 1 chr4:138827250-138827330 ( 51) TGTGGTCC 1 chr10:29431542-29431622 ( 2) TGTGGTCC 1 chr1:94194428-94194508 ( 49) TTAGGTCC 1 chr2:96823571-96823651 ( 33) CTGGGTCC 1 chr12:51611012-51611092 ( 46) TGTGGTCC 1 chr2:219134618-219134698 ( 71) CTGGGTCC 1 chr6:150346996-150347076 ( 19) CTGGGTCC 1 chr20:47936094-47936174 ( 66) TGTGGTCC 1 chr22:19620452-19620532 ( 38) TTAGGTCC 1 chr19:41145609-41145689 ( 24) TGTGGTCC 1 chr10:75811952-75812032 ( 20) TGTGGTCC 1 chr12:31934961-31935041 ( 18) TGTGGTCC 1 chr8:101804269-101804349 ( 50) TGTGGTCC 1 chr17:73761638-73761718 ( 23) CTAGGTCC 1 chr11:102256260-10225634 ( 36) CTAGGTCC 1 chr5:38798126-38798206 ( 47) CTAGGTCC 1 chr14:101696649-10169672 ( 30) CTAGGTCC 1 chr22:19284538-19284618 ( 38) CTAGGTCC 1 chrX:129091578-129091658 ( 37) TGGGGTCC 1 chr1:55353087-55353167 ( 6) TGGGGTCC 1 chr19:7939449-7939529 ( 68) TGGGGTCC 1 chr19:35453921-35454001 ( 19) TCTGGTCC 1 chr1:93250577-93250657 ( 57) CGGGGTCC 1 chr12:113905420-11390550 ( 41) CCTGGTCC 1 chr8:142139671-142139751 ( 24) CCTGGTCC 1 chr3:52568285-52568365 ( 10) CGGGGTCC 1 chr7:75368059-75368139 ( 41) CGGGGTCC 1 chr13:99711269-99711349 ( 19) TGAGGTCC 1 chr17:45820289-45820369 ( 37) CCTGGTCC 1 chr22:20177979-20178059 ( 15) CATGGTCC 1 chr12:47475087-47475167 ( 58) CATGGTCC 1 chr9:27441000-27441080 ( 27) TAGGGTCC 1 chr11:117923705-11792378 ( 36) CCGGGTCC 1 chr19:17420568-17420648 ( 8) TCAGGTCC 1 chr4:184320072-184320152 ( 6) CCGGGTCC 1 chr19:23258218-23258298 ( 52) CCGGGTCC 1 chr7:116853128-116853208 ( 48) TCAGGTCC 1 chr3:112530861-112530941 ( 22) TCAGGTCC 1 chr19:33166433-33166513 ( 42) CAGGGTCC 1 chr11:118978130-11897821 ( 13) CAGGGTCC 1 chr11:111956717-11195679 ( 22) TAAGGTCC 1 chr8:23365234-23365314 ( 54) CAGGGTCC 1 chr2:130076424-130076504 ( 11) ATTGGTCC 1 chr16:46667238-46667318 ( 2) ATTGGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKDGGTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 6.8e-006 -257 84 -1237 110 -77 -54 1 85 1 -1237 35 91 -1237 -1237 183 -1237 -1237 -1237 183 -1237 -1237 -1237 -1237 218 -1237 187 -1237 -1237 -1237 187 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKDGGTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 6.8e-006 0.037736 0.490566 0.000000 0.471698 0.132075 0.188679 0.283019 0.396226 0.226415 0.000000 0.358491 0.415094 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKDGGTCC MEME-4 regular expression -------------------------------------------------------------------------------- [CT][TG][TGA]GGTCC -------------------------------------------------------------------------------- Time 16.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGAGGAC MEME-5 width = 8 sites = 12 llr = 127 E-value = 4.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGAGGAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a::a1 pos.-specific C :::::::9 probability G a:a:aa:: matrix T :a:::::: bits 2.2 * * * 2.0 * * * 1.7 ******* 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGAGGAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAGGAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:29431542-29431622 40 1.90e-05 acgggcccag gtgaggac aggcactcct chr21:45905309-45905389 29 1.90e-05 ccggacctgg gtgaggac aggcacttct chr11:129820375-12982045 50 1.90e-05 CCCTGTGAGG GTGAGGAC TCCACAGGGA chr18:711546-711626 19 1.90e-05 ACGAGGGGCA GTGAGGAC CCAGTGGGGA chr20:61406301-61406381 34 1.90e-05 CTTGGTCCCT GTGAGGAC CCACATGAGG chr22:19654840-19654920 20 1.90e-05 acggacctag gtgaggac aggcattttt chr22:20177979-20178059 53 1.90e-05 atggacctag gtgaggac aggcatttcc chr15:43806607-43806687 11 1.90e-05 CCTTCTGTTA GTGAGGAC GCAAAGGGGA chr17:42706279-42706359 27 1.90e-05 acggacctag gtgaggac aggcattttt chr12:31934961-31935041 56 1.90e-05 acggacctag gtgaggac aggcatttcc chr11:78316559-78316639 31 1.90e-05 acggacctag gtgaggac aggcactcct chr2:145290972-145291052 34 3.47e-05 ccacggaccc gtgaggaa ccaggccaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAGGAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:29431542-29431622 1.9e-05 39_[+5]_33 chr21:45905309-45905389 1.9e-05 28_[+5]_44 chr11:129820375-12982045 1.9e-05 49_[+5]_23 chr18:711546-711626 1.9e-05 18_[+5]_54 chr20:61406301-61406381 1.9e-05 33_[+5]_39 chr22:19654840-19654920 1.9e-05 19_[+5]_53 chr22:20177979-20178059 1.9e-05 52_[+5]_20 chr15:43806607-43806687 1.9e-05 10_[+5]_62 chr17:42706279-42706359 1.9e-05 26_[+5]_46 chr12:31934961-31935041 1.9e-05 55_[+5]_17 chr11:78316559-78316639 1.9e-05 30_[+5]_42 chr2:145290972-145291052 3.5e-05 33_[+5]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAGGAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGAGGAC width=8 seqs=12 chr10:29431542-29431622 ( 40) GTGAGGAC 1 chr21:45905309-45905389 ( 29) GTGAGGAC 1 chr11:129820375-12982045 ( 50) GTGAGGAC 1 chr18:711546-711626 ( 19) GTGAGGAC 1 chr20:61406301-61406381 ( 34) GTGAGGAC 1 chr22:19654840-19654920 ( 20) GTGAGGAC 1 chr22:20177979-20178059 ( 53) GTGAGGAC 1 chr15:43806607-43806687 ( 11) GTGAGGAC 1 chr17:42706279-42706359 ( 27) GTGAGGAC 1 chr12:31934961-31935041 ( 56) GTGAGGAC 1 chr11:78316559-78316639 ( 31) GTGAGGAC 1 chr2:145290972-145291052 ( 34) GTGAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAGGAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 4.9e-001 -1023 -1023 183 -1023 -1023 -1023 -1023 218 -1023 -1023 183 -1023 215 -1023 -1023 -1023 -1023 -1023 183 -1023 -1023 -1023 183 -1023 215 -1023 -1023 -1023 -143 174 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAGGAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.9e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGAGGAC MEME-5 regular expression -------------------------------------------------------------------------------- GTGAGGAC -------------------------------------------------------------------------------- Time 19.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:227473250-227473330 3.34e-02 53_[+2(1.19e-05)]_19 chr13:19397230-19397310 3.10e-01 80 chr17:8029532-8029612 6.36e-01 80 chr18:68129408-68129488 1.03e-01 80 chr17:7308518-7308598 3.55e-01 80 chr19:35453921-35454001 7.06e-03 8_[+3(4.77e-05)]_64 chr5:180497136-180497216 1.49e-02 80 chr13:28404158-28404238 1.45e-02 57_[+1(5.07e-05)]_15 chrX:118544650-118544730 9.97e-01 80 chr17:8030151-8030231 4.05e-01 80 chr14:21150712-21150792 3.10e-01 80 chr2:145290972-145291052 2.43e-04 24_[+1(5.07e-05)]_1_[+5(3.47e-05)]_\ 39 chr11:78316559-78316639 7.81e-04 19_[+1(5.07e-05)]_3_[+5(1.90e-05)]_\ 42 chr19:7939449-7939529 1.19e-02 80 chr3:132736030-132736110 1.40e-01 80 chr2:61293662-61293742 1.76e-02 80 chr1:114940347-114940427 5.63e-01 80 chr8:23365234-23365314 8.06e-02 80 chr5:150428222-150428302 1.11e-01 80 chr6:139909576-139909656 2.69e-01 80 chr16:3182012-3182092 2.85e-03 7_[+4(3.12e-05)]_65 chr20:22404231-22404311 8.43e-01 80 chrX:38801044-38801124 1.88e-01 40_[+2(7.22e-05)]_32 chr21:15293898-15293978 7.06e-01 80 chr8:101804269-101804349 2.54e-02 80 chr18:32552810-32552890 3.12e-01 80 chr19:39470685-39470765 3.13e-04 39_[+1(5.07e-05)]_33 chr20:49120909-49120989 3.54e-02 80 chr16:89574017-89574097 9.99e-02 80 chr12:83729632-83729712 7.50e-01 80 chr11:111956717-11195679 1.21e-02 80 chr12:109256514-10925659 9.96e-01 80 chr6:126656527-126656607 4.80e-02 21_[+3(8.25e-05)]_51 chr6:150262815-150262895 9.40e-02 12_[+1(5.07e-05)]_60 chr3:52567020-52567100 1.24e-04 40_[+2(5.33e-05)]_17_[+4(1.39e-05)]_\ 7 chr4:1875209-1875289 2.02e-03 80 chr5:176981038-176981118 4.87e-03 10_[+1(5.07e-05)]_62 chr1:31545326-31545406 2.70e-01 80 chr7:32674704-32674784 1.65e-01 80 chr17:80820697-80820777 2.20e-02 48_[+3(1.69e-05)]_24 chr3:112530861-112530941 3.54e-03 80 chr22:19284538-19284618 2.56e-03 27_[+3(1.69e-05)]_45 chr8:24857560-24857640 2.52e-01 80 chr21:40908185-40908265 9.09e-01 80 chr16:1429899-1429979 2.68e-01 80 chr16:46667238-46667318 1.56e-01 80 chr16:86794813-86794893 4.33e-01 80 chr7:116853128-116853208 8.52e-02 80 chr17:45820289-45820369 1.24e-03 4_[+3(1.69e-05)]_68 chr10:73680634-73680714 7.93e-03 43_[+3(1.69e-05)]_29 chr12:102819037-10281911 3.86e-01 80 chr12:31934961-31935041 4.77e-05 44_[+1(5.07e-05)]_3_[+5(1.90e-05)]_\ 17 chr12:102831871-10283195 6.30e-02 28_[+2(5.33e-05)]_10_[+2(1.19e-05)]_\ 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