******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr20:35580141-35580221 1.0000 80 chr19:46406082-46406162 1.0000 80 chrX:148622441-148622521 1.0000 80 chr19:9420486-9420566 1.0000 80 chr7:6487593-6487673 1.0000 80 chr17:259906-259986 1.0000 80 chr5:42909082-42909162 1.0000 80 chr6:164461227-164461307 1.0000 80 chr17:47754901-47754981 1.0000 80 chrX:54835285-54835365 1.0000 80 chr19:40023486-40023566 1.0000 80 chr10:27389422-27389502 1.0000 80 chr19:35615520-35615600 1.0000 80 chr17:7210671-7210751 1.0000 80 chr5:218294-218374 1.0000 80 chr2:3522767-3522847 1.0000 80 chr11:18417745-18417825 1.0000 80 chr22:24199986-24200066 1.0000 80 chr19:6199692-6199772 1.0000 80 chrX:48456465-48456545 1.0000 80 chr19:42721905-42721985 1.0000 80 chr3:120315001-120315081 1.0000 80 chrX:149106778-149106858 1.0000 80 chr5:52095846-52095926 1.0000 80 chr7:44621916-44621996 1.0000 80 chr13:20357162-20357242 1.0000 80 chr7:149444-149524 1.0000 80 chr9:124922018-124922098 1.0000 80 chr19:9434820-9434900 1.0000 80 chr19:48867249-48867329 1.0000 80 chr17:63534167-63534247 1.0000 80 chr5:130500981-130501061 1.0000 80 chr4:54243760-54243840 1.0000 80 chrX:15692938-15693018 1.0000 80 chr2:190526068-190526148 1.0000 80 chr2:33824367-33824447 1.0000 80 chr14:23058113-23058193 1.0000 80 chr19:3762945-3763025 1.0000 80 chr14:75518174-75518254 1.0000 80 chr9:139685764-139685844 1.0000 80 chr16:27215154-27215234 1.0000 80 chr20:34042599-34042679 1.0000 80 chr17:36452902-36452982 1.0000 80 chr6:122793021-122793101 1.0000 80 chrX:133507263-133507343 1.0000 80 chr10:124639101-12463918 1.0000 80 chr9:80850891-80850971 1.0000 80 chr10:1851472-1851552 1.0000 80 chr22:28315374-28315454 1.0000 80 chr14:102771500-10277158 1.0000 80 chr2:27357472-27357552 1.0000 80 chr16:71598815-71598895 1.0000 80 chr17:47439864-47439944 1.0000 80 chr3:135915236-135915316 1.0000 80 chr1:100731670-100731750 1.0000 80 chr12:13080554-13080634 1.0000 80 chr22:25843991-25844071 1.0000 80 chr13:28024310-28024390 1.0000 80 chr13:49106839-49106919 1.0000 80 chr2:216979572-216979652 1.0000 80 chr5:132073333-132073413 1.0000 80 chr12:31226750-31226830 1.0000 80 chr12:27090906-27090986 1.0000 80 chr7:50518030-50518110 1.0000 80 chr5:133561966-133562046 1.0000 80 chr6:169852562-169852642 1.0000 80 chr7:6388641-6388721 1.0000 80 chr2:113012701-113012781 1.0000 80 chr19:5720593-5720673 1.0000 80 chr7:149570999-149571079 1.0000 80 chr19:38085654-38085734 1.0000 80 chr19:11616711-11616791 1.0000 80 chr20:37101342-37101422 1.0000 80 chr16:188714-188794 1.0000 80 chr21:35747666-35747746 1.0000 80 chr3:80819710-80819790 1.0000 80 chr4:26862211-26862291 1.0000 80 chr17:27278691-27278771 1.0000 80 chr19:38210654-38210734 1.0000 80 chr7:6746566-6746646 1.0000 80 chr5:112043121-112043201 1.0000 80 chr10:15001268-15001348 1.0000 80 chr5:162887111-162887191 1.0000 80 chr17:8103563-8103643 1.0000 80 chr3:195717202-195717282 1.0000 80 chr9:71394905-71394985 1.0000 80 chr8:117887092-117887172 1.0000 80 chr12:9600790-9600870 1.0000 80 chr17:21831460-21831540 1.0000 80 chr10:99185871-99185951 1.0000 80 chr12:44152587-44152667 1.0000 80 chr2:99758104-99758184 1.0000 80 chr1:176176679-176176759 1.0000 80 chr19:40324885-40324965 1.0000 80 chr2:37311610-37311690 1.0000 80 chr19:57874703-57874783 1.0000 80 chr20:25834639-25834719 1.0000 80 chr14:64854930-64855010 1.0000 80 chr3:197354789-197354869 1.0000 80 chr19:40030795-40030875 1.0000 80 chr7:11013404-11013484 1.0000 80 chr17:45570014-45570094 1.0000 80 chr18:19320713-19320793 1.0000 80 chr18:77748577-77748657 1.0000 80 chr7:74508834-74508914 1.0000 80 chr21:48055439-48055519 1.0000 80 chr19:56915368-56915448 1.0000 80 chr13:50656282-50656362 1.0000 80 chr2:37423608-37423688 1.0000 80 chr3:119396312-119396392 1.0000 80 chr22:38349617-38349697 1.0000 80 chr1:151170961-151171041 1.0000 80 chr3:195384798-195384878 1.0000 80 chr12:9436213-9436293 1.0000 80 chr4:1408946-1409026 1.0000 80 chr3:127293886-127293966 1.0000 80 chr21:46293722-46293802 1.0000 80 chr19:50169179-50169259 1.0000 80 chr20:30539803-30539883 1.0000 80 chr13:21872164-21872244 1.0000 80 chr11:61582751-61582831 1.0000 80 chr11:76092323-76092403 1.0000 80 chr19:984680-984760 1.0000 80 chr16:14164898-14164978 1.0000 80 chr12:69753447-69753527 1.0000 80 chr17:21030153-21030233 1.0000 80 chr18:71815065-71815145 1.0000 80 chr17:27169802-27169882 1.0000 80 chr11:65101247-65101327 1.0000 80 chr12:121063713-12106379 1.0000 80 chr8:67560685-67560765 1.0000 80 chr17:34257739-34257819 1.0000 80 chr21:40759666-40759746 1.0000 80 chr11:63448880-63448960 1.0000 80 chr18:47808102-47808182 1.0000 80 chr7:102004248-102004328 1.0000 80 chr17:37213249-37213329 1.0000 80 chr19:5622947-5623027 1.0000 80 chr5:175395246-175395326 1.0000 80 chr14:35451726-35451806 1.0000 80 chr18:10525833-10525913 1.0000 80 chr19:44259072-44259152 1.0000 80 chr12:120554652-12055473 1.0000 80 chr20:35402188-35402268 1.0000 80 chr15:78832719-78832799 1.0000 80 chr5:43007796-43007876 1.0000 80 chr7:25896677-25896757 1.0000 80 chr6:121655680-121655760 1.0000 80 chr3:48594462-48594542 1.0000 80 chr7:99869855-99869935 1.0000 80 chr1:142890984-142891064 1.0000 80 chr1:35734190-35734270 1.0000 80 chr3:52232068-52232148 1.0000 80 chr20:3185040-3185120 1.0000 80 chr15:101626631-10162671 1.0000 80 chr1:231473628-231473708 1.0000 80 chr2:227700738-227700818 1.0000 80 chr12:54673917-54673997 1.0000 80 chr4:148605355-148605435 1.0000 80 chr9:131580593-131580673 1.0000 80 chr16:15068521-15068601 1.0000 80 chr20:42939849-42939929 1.0000 80 chr1:39339032-39339112 1.0000 80 chr1:170043850-170043930 1.0000 80 chr19:36606058-36606138 1.0000 80 chr21:43430148-43430228 1.0000 80 chr17:36714575-36714655 1.0000 80 chr6:52535834-52535914 1.0000 80 chr5:138678046-138678126 1.0000 80 chrX:30265126-30265206 1.0000 80 chr12:120875653-12087573 1.0000 80 chrX:73512281-73512361 1.0000 80 chr2:99953737-99953817 1.0000 80 chr20:25176222-25176302 1.0000 80 chr3:184081110-184081190 1.0000 80 chr2:48667770-48667850 1.0000 80 chr19:45972470-45972550 1.0000 80 chr7:72349865-72349945 1.0000 80 chr7:56131890-56131970 1.0000 80 chr12:57623420-57623500 1.0000 80 chr19:7968501-7968581 1.0000 80 chr2:91847951-91848031 1.0000 80 chr19:46088119-46088199 1.0000 80 chr7:76178565-76178645 1.0000 80 chr7:5085431-5085511 1.0000 80 chr16:4234021-4234101 1.0000 80 chr14:96968632-96968712 1.0000 80 chr17:47755457-47755537 1.0000 80 chr7:66057329-66057409 1.0000 80 chr16:70100143-70100223 1.0000 80 chr6:24403100-24403180 1.0000 80 chr21:34697215-34697295 1.0000 80 chrX:347978-348058 1.0000 80 chr22:46692620-46692700 1.0000 80 chr17:73401855-73401935 1.0000 80 chr19:37178454-37178534 1.0000 80 chr12:106751783-10675186 1.0000 80 chr9:140118061-140118141 1.0000 80 chr1:91966385-91966465 1.0000 80 chr6:30614750-30614830 1.0000 80 chr15:90319852-90319932 1.0000 80 chr19:11670154-11670234 1.0000 80 chr11:43333462-43333542 1.0000 80 chr2:70475871-70475951 1.0000 80 chr19:6678092-6678172 1.0000 80 chr6:88118149-88118229 1.0000 80 chr19:50861778-50861858 1.0000 80 chr3:75834706-75834786 1.0000 80 chr12:25099526-25099606 1.0000 80 chr3:150320999-150321079 1.0000 80 chr17:7518565-7518645 1.0000 80 chr14:24036742-24036822 1.0000 80 chr7:39989159-39989239 1.0000 80 chr19:36705605-36705685 1.0000 80 chr16:27561216-27561296 1.0000 80 chr19:56135960-56136040 1.0000 80 chr10:16859620-16859700 1.0000 80 chr4:6675601-6675681 1.0000 80 chr18:77439685-77439765 1.0000 80 chr1:3773791-3773871 1.0000 80 chr2:26256886-26256966 1.0000 80 chr5:77590518-77590598 1.0000 80 chr4:144434530-144434610 1.0000 80 chr11:8932702-8932782 1.0000 80 chr17:57970309-57970389 1.0000 80 chr22:42017245-42017325 1.0000 80 chr20:25604599-25604679 1.0000 80 chr6:153304743-153304823 1.0000 80 chr10:124713864-12471394 1.0000 80 chr20:46089345-46089425 1.0000 80 chr17:58603573-58603653 1.0000 80 chr1:167189771-167189851 1.0000 80 chr1:161129178-161129258 1.0000 80 chr7:157129599-157129679 1.0000 80 chr19:16222133-16222213 1.0000 80 chr2:73053167-73053247 1.0000 80 chr3:46600022-46600102 1.0000 80 chr7:100861362-100861442 1.0000 80 chr14:52456094-52456174 1.0000 80 chr6:99872758-99872838 1.0000 80 chr1:154947360-154947440 1.0000 80 chr5:169010581-169010661 1.0000 80 chr6:41040331-41040411 1.0000 80 chr20:61493505-61493585 1.0000 80 chr17:80606317-80606397 1.0000 80 chr17:3571978-3572058 1.0000 80 chr17:17739535-17739615 1.0000 80 chr19:44100392-44100472 1.0000 80 chr8:94753275-94753355 1.0000 80 chr1:22379119-22379199 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZBTB2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.165 C 0.333 G 0.331 T 0.171 Background letter frequencies (from file dataset with add-one prior applied): A 0.165 C 0.333 G 0.331 T 0.171 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGCATGCG MEME-1 width = 8 sites = 222 llr = 1814 E-value = 3.5e-309 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCATGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C 9:a1::a: probability G :a:11a:a matrix T ::::9::: bits 2.6 2.3 2.1 1.8 Relative 1.6 ** *** Entropy 1.3 ******* (11.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCATGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCATGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:44100392-44100472 65 3.78e-05 AGCCTACCCA CGCATGCG CAAAAGGC chr17:17739535-17739615 49 3.78e-05 AGCGCCCATG CGCATGCG CAAGAGCTCC chr6:41040331-41040411 5 3.78e-05 CCCG CGCATGCG TAACGAAACT chr1:154947360-154947440 15 3.78e-05 ATAGAATTGG CGCATGCG TACGAGGTGC chr3:46600022-46600102 33 3.78e-05 gtcagatcca cgcatgcg cagctagggg chr7:157129599-157129679 33 3.78e-05 GTGGAAACTG CGCATGCG CGGCGTCAGG chr1:167189771-167189851 16 3.78e-05 CTAGAGGGAG CGCATGCG CCGGCGACAC chr20:25604599-25604679 31 3.78e-05 CCGCCGCCTG CGCATGCG CAAGGCGGAC chr22:42017245-42017325 51 3.78e-05 ACAGGGCCCG CGCATGCG TGGATTGTCG chr11:8932702-8932782 43 3.78e-05 TAGCGTTGCG CGCATGCG CCTTGACGAG chr4:144434530-144434610 41 3.78e-05 GGGCAGTATG CGCATGCG CGCTCAGGAC chr5:77590518-77590598 50 3.78e-05 CCACCCCCTG CGCATGCG CAGTGTGCAG chr4:6675601-6675681 37 3.78e-05 ACATGGGgtg cgcatgcg tgcggggggg chr16:27561216-27561296 23 3.78e-05 GCGCCCGGGG CGCATGCG CAACGCACCG chr12:25099526-25099606 28 3.78e-05 attactcctg cgcatgcg tacgggggga chr3:75834706-75834786 48 3.78e-05 GGCGGGGCGG CGCATGCG CAGAGAGAAA chr19:50861778-50861858 11 3.78e-05 CCACCCGCTG CGCATGCG CTTCACTTGG chr6:88118149-88118229 20 3.78e-05 GGCAGCGGCG CGCATGCG CACACAGATC chr15:90319852-90319932 13 3.78e-05 GGAGAAACTG CGCATGCG CACGCTGGCC chr9:140118061-140118141 25 3.78e-05 GCCTTGTTTG CGCATGCG CCATAGGCGC chr12:106751783-10675186 49 3.78e-05 GCGGTTTGTG CGCATGCG CCGGGCTTCT chr19:37178454-37178534 51 3.78e-05 CGTGGGAGTG CGCATGCG CAGACGCCCG chr17:73401855-73401935 51 3.78e-05 GGTGTCAGGG CGCATGCG CCAGACCTCC chr22:46692620-46692700 39 3.78e-05 TGAAGCAGTG CGCATGCG CACTGGACGC chr16:70100143-70100223 50 3.78e-05 AGCAACCTTG CGCATGCG CAGGACTCGC chr16:4234021-4234101 29 3.78e-05 GAAGGCAGTG CGCATGCG CGGGGCGAGC chr7:5085431-5085511 40 3.78e-05 TGCGTGTTCG CGCATGCG CGCCGCCGCT chr19:7968501-7968581 59 3.78e-05 CGGGAATTGG CGCATGCG CACTACGGTG chr12:57623420-57623500 1 3.78e-05 . CGCATGCG TAGATCCCTC chr7:56131890-56131970 65 3.78e-05 TGCATGAGGG CGCATGCG CAGCGGGG chr3:184081110-184081190 29 3.78e-05 CTTGTTTGTG CGCATGCG CCACTCTCGT chr20:25176222-25176302 71 3.78e-05 CTCCCGCCTG CGCATGCG CG chr12:120875653-12087573 44 3.78e-05 GGAGGGCACA CGCATGCG CACGAAGGAA chr6:52535834-52535914 27 3.78e-05 AGGGACACAG CGCATGCG CGCGGCAGGG chr19:36606058-36606138 51 3.78e-05 AAGGCCAGTG CGCATGCG CGAGTTTACC chr1:170043850-170043930 4 3.78e-05 CGA CGCATGCG CTTGCTCTGC chr20:42939849-42939929 32 3.78e-05 TCCCTTCGAG CGCATGCG CACTGCCCGC chr16:15068521-15068601 23 3.78e-05 GCGAGTCCTG CGCATGCG CAAGGTTGCC chr12:54673917-54673997 51 3.78e-05 CCGCCCACTA CGCATGCG CAAAGCTAGG chr20:3185040-3185120 25 3.78e-05 CGCACGGACG CGCATGCG TCCCGCCCGC chr3:52232068-52232148 53 3.78e-05 GCGCCCAAGG CGCATGCG CAGCGGTCAC chr7:99869855-99869935 23 3.78e-05 GTCCCCACTG CGCATGCG CGGTCCGCGC chr7:25896677-25896757 49 3.78e-05 CGCCATAGCG CGCATGCG CACTGGTGGA chr5:43007796-43007876 51 3.78e-05 attaagagcg cgcatgcg cactggggga chr15:78832719-78832799 51 3.78e-05 AGCGGTTCTG CGCATGCG CGGGGGCCAT chr20:35402188-35402268 27 3.78e-05 CAACCAAGGG CGCATGCG CGGCCGTCAG chr19:44259072-44259152 8 3.78e-05 CGTCCTG CGCATGCG CTGAGGGCTG chr14:35451726-35451806 48 3.78e-05 GCTGGCATTG CGCATGCG CAAGCAGAGA chr5:175395246-175395326 42 3.78e-05 CGCTGCCGCA CGCATGCG CCCGGAAGAG chr19:5622947-5623027 15 3.78e-05 ATCTGCAGCT CGCATGCG TCCCGGCAGT chr18:47808102-47808182 31 3.78e-05 ATCTAGCTGG CGCATGCG CTTTCCAGCC chr11:63448880-63448960 41 3.78e-05 GCCCTTTGTG CGCATGCG CGCTCGCGCT chr21:40759666-40759746 22 3.78e-05 AGAAACCACG CGCATGCG CAGACACCCT chr12:121063713-12106379 36 3.78e-05 AATCGCCCTG CGCATGCG CAGCCGCCAT chr18:71815065-71815145 48 3.78e-05 ACCCCTTATG CGCATGCG CGCGTGAGCA chr17:21030153-21030233 42 3.78e-05 CCACCCAACG CGCATGCG CAGCCTCAAT chr16:14164898-14164978 24 3.78e-05 CCCGGACATG CGCATGCG CACGCGCACC chr19:984680-984760 20 3.78e-05 GGGCGCTCTG CGCATGCG CGGGTCTGGG chr11:76092323-76092403 41 3.78e-05 GAGAGAATTG CGCATGCG CGCCTGTCTC chr11:61582751-61582831 12 3.78e-05 GTTTCGTCTG CGCATGCG CCGGGACACG chr3:127293886-127293966 28 3.78e-05 TATGTGCGTG CGCATGCG CACTGTATGC chr12:9436213-9436293 29 3.78e-05 TCCCGGAGTG CGCATGCG CAGCGGCGGG chr1:151170961-151171041 50 3.78e-05 GAAGGTCGGG CGCATGCG CAGTGCTCGG chr22:38349617-38349697 15 3.78e-05 CACCAGTCAG CGCATGCG CACTTTCCCC chr3:119396312-119396392 49 3.78e-05 CCCCCTTCAG CGCATGCG CAAGGAGGCC chr2:37423608-37423688 24 3.78e-05 CCAACCGTTG CGCATGCG CAGTCCCCCT chr18:19320713-19320793 25 3.78e-05 CTAGACCGCG CGCATGCG CACTCTCCTT chr7:11013404-11013484 40 3.78e-05 GCGAGTCCTG CGCATGCG CCCTCAATTC chr14:64854930-64855010 45 3.78e-05 TTCCGAACTG CGCATGCG CCACCGCGTC chr20:25834639-25834719 56 3.78e-05 tcaggccttg cgcatgcg cactggcgag chr2:37311610-37311690 48 3.78e-05 GGTCGGTGGG CGCATGCG CAGCGCGCGC chr19:40324885-40324965 25 3.78e-05 CTTACCTGCA CGCATGCG CAGCGAGCTA chr2:99758104-99758184 49 3.78e-05 GGATGGAACG CGCATGCG CAAGGCTGTC chr10:99185871-99185951 20 3.78e-05 CAGGATGCAG CGCATGCG CACACCTGGA chr12:9600790-9600870 31 3.78e-05 CCCGCCGCTG CGCATGCG CACTCCGGGA chr9:71394905-71394985 47 3.78e-05 CGAAGGGCTA CGCATGCG CAGAGGGGCC chr17:8103563-8103643 30 3.78e-05 gtgaacactg cgcatgcg gtccctccca chr5:162887111-162887191 46 3.78e-05 CGGGTCACTG CGCATGCG CAGGAACGCA chr10:15001268-15001348 26 3.78e-05 CCAGCCCTCG CGCATGCG CATAAAAGCC chr5:112043121-112043201 67 3.78e-05 ACACCTCTCA CGCATGCG CATTGT chr7:6746566-6746646 25 3.78e-05 GGCCGCGGCG CGCATGCG CGAACACGCA chr19:38210654-38210734 24 3.78e-05 GCCTCGAGTG CGCATGCG CAGATCGGCC chr19:11616711-11616791 29 3.78e-05 ATGGAAACTG CGCATGCG CACAACCAAC chr19:5720593-5720673 62 3.78e-05 CTCATTGATG CGCATGCG CAGGGCTTCA chr7:6388641-6388721 48 3.78e-05 AGGTAAGACG CGCATGCG CGGGAGAGGA chr12:31226750-31226830 25 3.78e-05 TCCCGGAGTG CGCATGCG CAGCGGCGGG chr2:216979572-216979652 36 3.78e-05 aaccacacta cgcatgcg gccccctctt chr13:49106839-49106919 51 3.78e-05 AGCGGAATTG CGCATGCG CAGGGCCGCC chr22:25843991-25844071 11 3.78e-05 CCACATGGTG CGCATGCG TGTTCTCACC chr1:100731670-100731750 45 3.78e-05 CCGAGCTACG CGCATGCG CACTGACTGC chr3:135915236-135915316 51 3.78e-05 GCTCACTCCA CGCATGCG CAAGCTGCTA chr17:47439864-47439944 32 3.78e-05 ACGAGAGCTG CGCATGCG CGGCGCTCTC chr16:71598815-71598895 37 3.78e-05 CTAGCGACGG CGCATGCG CACTGACTAG chr2:27357472-27357552 34 3.78e-05 ACGCGCACTG CGCATGCG CACCTGTCTC chr14:102771500-10277158 24 3.78e-05 CTGTCGCCTG CGCATGCG CAAGATGCCC chr10:1851472-1851552 44 3.78e-05 TTGAGATGTG CGCATGCG CGTGCCCCCA chr6:122793021-122793101 46 3.78e-05 GCTGAGACTG CGCATGCG CGTCACTAGA chr16:27215154-27215234 65 3.78e-05 AGTGGTTTTG CGCATGCG TGAGGGCA chr14:75518174-75518254 43 3.78e-05 GACACCAGTG CGCATGCG CACCAGTTGT chr14:23058113-23058193 26 3.78e-05 GTGCTGTTTG CGCATGCG CACCCTCGTG chr2:190526068-190526148 30 3.78e-05 ACCCGGCCTG CGCATGCG TTCAAGTGAG chrX:15692938-15693018 53 3.78e-05 TAGGTAAGTG CGCATGCG CAGGATGCGA chr4:54243760-54243840 49 3.78e-05 GGGTCTCCTG CGCATGCG CAGACGGACC chr17:63534167-63534247 35 3.78e-05 gcagcccacg cgcatgcg catgcaaccc chr19:48867249-48867329 63 3.78e-05 ACATCAACTA CGCATGCG TTGCCTGCCT chr19:9434820-9434900 32 3.78e-05 TCTGCGTGGG CGCATGCG CATAACGGCC chr9:124922018-124922098 36 3.78e-05 ACGGCGCCTG CGCATGCG CATCCGGCAA chr13:20357162-20357242 43 3.78e-05 TGACTGACCG CGCATGCG CATAACGCTG chr5:52095846-52095926 71 3.78e-05 ACGGGGGCTG CGCATGCG CC chr3:120315001-120315081 24 3.78e-05 GAGCACTTCG CGCATGCG CATATCACCG chr19:42721905-42721985 26 3.78e-05 GCCCCTTCGG CGCATGCG CAGAACGAGG chr11:18417745-18417825 22 3.78e-05 CGCTGTAATG CGCATGCG CACGCGCACA chr19:35615520-35615600 59 3.78e-05 GGCGGCCGCA CGCATGCG CACAAGCAGC chr10:27389422-27389502 7 3.78e-05 CAAGTG CGCATGCG CACCTCAGAT chr19:40023486-40023566 17 3.78e-05 GCGAGACCTG CGCATGCG CGAGTCTCAG chrX:54835285-54835365 12 3.78e-05 ACGACCATTG CGCATGCG CACTATGTTT chr17:47754901-47754981 24 3.78e-05 CACCGCGATG CGCATGCG CCCCCGGGGC chr6:164461227-164461307 12 3.78e-05 ctgctgtctg cgcatgcg ccttcacagg chr5:42909082-42909162 31 3.78e-05 cttggtcctg cgcatgcg cagttcacaa chr17:259906-259986 18 3.78e-05 GATGGAAGCA CGCATGCG CGCACCGCTG chr19:9420486-9420566 22 3.78e-05 TGTCGACTCG CGCATGCG CAGAAGCACA chr19:46406082-46406162 65 3.78e-05 CTCCATCGCG CGCATGCG CGTGCCTC chr5:169010581-169010661 25 1.14e-04 TCTGCGCCTG CGCCTGCG CCAAGCCCAC chr19:16222133-16222213 49 1.14e-04 GTGCCTACTG CGCCTGCG CGAGCTGTGA chr6:153304743-153304823 70 1.14e-04 GGCGGGTCGG CGCCTGCG CAC chr1:3773791-3773871 31 1.14e-04 CCCCAGGCCG CGCCTGCG CACAAGGGGA chr3:150320999-150321079 63 1.14e-04 TGGCTGATCG CGCCTGCG CAGTGGGGAG chr19:11670154-11670234 47 1.14e-04 AGACGCAGTG CGCCTGCG CAAGAGCCGG chr2:91847951-91848031 39 1.14e-04 cgcctctcgg cgcctgcg cccgcgctgt chr5:138678046-138678126 27 1.14e-04 ACCCACTTTA CGCCTGCG CGTCGCCACG chr1:39339032-39339112 32 1.14e-04 AGGGGGCGCG CGCCTGCG CACTTGCAAA chr1:231473628-231473708 18 1.14e-04 TCAGACACTG CGCCTGCG CAAGTGGGCC chr15:101626631-10162671 29 1.14e-04 CCTCCTCCGG CGCCTGCG CGGCTCTTCC chr18:10525833-10525913 11 1.14e-04 TATCTCACCG CGCCTGCG CTAGATGCCC chr17:34257739-34257819 38 1.14e-04 CCCAGCATTG CGCCTGCG CAAGGCACGC chr11:65101247-65101327 9 1.14e-04 CCGGACGG CGCCTGCG CAGAGGGCAA chr17:27169802-27169882 24 1.14e-04 GCCGCTCCTG CGCCTGCG CAGCGTGTAG chr12:69753447-69753527 49 1.14e-04 GAGCCCGTTG CGCCTGCG CGCGGTGCGG chr20:30539803-30539883 57 1.14e-04 GCTTCCGGCG CGCCTGCG CAGTTAAAAG chr21:46293722-46293802 22 1.14e-04 AGGTTCAGTG CGCCTGCG CGATAGAGGA chr21:48055439-48055519 72 1.14e-04 CTTAGGACTG CGCCTgcg c chr3:197354789-197354869 27 1.14e-04 GGGGACATTG CGCCTGCG CACCACGCCA chr8:117887092-117887172 9 1.14e-04 TACCTGTG CGCCTGCG CAGCCAGCCC chr3:195717202-195717282 24 1.14e-04 GGGGACATTG CGCCTGCG CACCACGCGA chr21:35747666-35747746 44 1.14e-04 GGGCCCACTG CGCCTGCG CACGGAGTAG chr7:50518030-50518110 22 1.14e-04 GACTGACGTG CGCCTGCG CGCTGCTGTC chr10:124639101-12463918 3 1.14e-04 CG CGCCTGCG CATGGTCTCC chr9:139685764-139685844 23 1.14e-04 CTTCCGCCTG CGCCTGCG CAGGCCCGCT chr7:149444-149524 25 1.14e-04 ctcctctctg cgcctgcg cAGAGGCCAC chr19:6199692-6199772 7 1.14e-04 gtcctg cgcctgcg cGCCTTTCTT chr17:7210671-7210751 61 1.14e-04 AAACCGGGTG CGCCTGCG CGTTGCAGAT chr10:124713864-12471394 63 1.33e-04 TCGAGAGCGG AGCATGCG CACTGGCAGA chr14:24036742-24036822 14 1.33e-04 CTTCCTATTG AGCATGCG CGGGAGCCCC chr6:24403100-24403180 9 1.33e-04 ACCTTCCG AGCATGCG TGGGGAAGTA chr5:133561966-133562046 50 1.33e-04 ATGGAGCTGG AGCATGCG CAGTGCGCAC chr2:3522767-3522847 9 1.33e-04 CGCTGCTG AGCATGCG CAGCCCACCC chr2:26256886-26256966 1 2.47e-04 . CGCGTGCG CAGAGGCGGA chr10:16859620-16859700 45 2.47e-04 CCGAAGTTGG CGCGTGCG CAGTAGACTT chr21:34697215-34697295 5 2.47e-04 GCGG CGCGTGCG TAGAGGGGCG chr7:76178565-76178645 51 2.47e-04 TGCGTGTTCG CGCGTGCG TGCTCGCACA chr7:72349865-72349945 29 2.47e-04 TGCGTGTTCG CGCGTGCG TGCTCGCACA chr17:36714575-36714655 2 2.47e-04 G CGCATGCT CAGCTCTGCC chr3:48594462-48594542 10 2.47e-04 TCGAGAATG CGCATGCT CAACTCCGGA chr7:102004248-102004328 48 2.47e-04 TGCGTGTTCG CGCGTGCG TGCTTGCACA chr19:56915368-56915448 19 2.47e-04 GCGGTCACTG CGCGTGCG CCTCACCGCG chr17:45570014-45570094 8 2.47e-04 ACGGCCG CGCGTGCG CAGGGAGACA chr19:40030795-40030875 6 2.47e-04 CAGTG CGCGTGCG TGGGCGCTAT chr7:149570999-149571079 12 2.47e-04 TCAGGAGATG CGCGTGCG CGGCCCGGCC chr12:27090906-27090986 13 2.47e-04 AGCAGGAgcg cgcgtgcg cgtgcacaca chr5:132073333-132073413 42 2.47e-04 ACTGAGGCCG CGCGTGCG CAATGCTGCC chr12:13080554-13080634 27 2.47e-04 ccacacactg cgcatgcT CCCCTCCCAG chr5:130500981-130501061 49 2.47e-04 CCTAATCTTG CGCGTGCG CACTGGCGAC chrX:48456465-48456545 5 2.47e-04 GTGG TGCATGCG CAATGGCGAT chr22:24199986-24200066 61 2.47e-04 ACGCTCACTG CGCGTGCG CTAGCGCCTC chr7:6487593-6487673 11 2.47e-04 CGGGGACCTG CGCATGCT CACGCTGAGG chr17:3571978-3572058 70 3.21e-04 GCGCCCACGG CGCAGGCG CGG chr19:56135960-56136040 46 3.21e-04 AGAGCTACTG CGCAggcg cagtgcgggg chr2:70475871-70475951 50 3.21e-04 CCTCAGACTG CGCAGGCG CAAGTATTAA chr6:30614750-30614830 38 3.21e-04 AGCCCGCGGG CGCAGGCG CGCTTACAGC chr1:91966385-91966465 27 3.21e-04 GGAAGTGTTG CGCAGGCG CATCCGATCG chr14:96968632-96968712 45 3.21e-04 GGCGCTGGTG CGCAGGCG CACGCACGGC chr9:131580593-131580673 27 3.21e-04 GAGCTCCCTG CGCAGGCG CAGAGGAGAG chr2:227700738-227700818 45 3.21e-04 GACGTGGGGA CGCAGGCG GGTCGTAGAG chr12:120554652-12055473 12 3.21e-04 CCCACCACTG CGCAGGCG CAGCGTCTGG chr17:37213249-37213329 16 3.21e-04 GCGTGCCTTG CGCAGGCG CAGTACTGCG chr19:50169179-50169259 49 3.21e-04 CGGCCCAGTG CGCAGGCG CGGGAAAGTT chr3:195384798-195384878 14 3.21e-04 GTCCGCTTTG CGCAGGCG CGGCGTCCCC chr1:176176679-176176759 7 3.21e-04 CGACTG CGCAGGCG CGCGCCGGGC chr17:27278691-27278771 9 3.21e-04 AGGTCTCG CGCAGGCG CTTGAGAAAG chr16:188714-188794 40 3.21e-04 cAGCGGAATG CGCAGGCG CGGGGCCTTC chr20:37101342-37101422 3 3.21e-04 TG CGCAGGCG CAGCTTCCGG chr2:113012701-113012781 70 3.21e-04 CTCGGCTCTG CGCAGGCG CCG chr20:34042599-34042679 26 3.21e-04 TGGAGCTGTG CGCAGGCG CACCTAGAAC chr19:3762945-3763025 3 3.21e-04 TG CGCAGGCG CAGTTTGAGG chr5:218294-218374 25 3.21e-04 TGGCATGGTG CGCAGGCG CGATGTCCCC chr13:50656282-50656362 26 3.39e-04 TCCCGCCAGG CACATGCG CAGAATCATC chr8:94753275-94753355 23 4.13e-04 ACCAAGCTTG CGCACGCG CGCTGCCGCT chr6:99872758-99872838 28 4.13e-04 GTTCCCACTG CGCACGCG CAGTGTTTAA chr7:100861362-100861442 11 4.13e-04 AAAGCTGTGG CGCACGCG CAGAAGTACA chr19:6678092-6678172 47 4.13e-04 GGCGGTCGCG CGCACGCG CAGGGAAAGC chr21:43430148-43430228 49 4.13e-04 CCAGGTCCCG CGCACGCG CAGAAGCGCT chr4:26862211-26862291 53 4.13e-04 TGGGATGCCG CGCACGCG CAGTACAGCA chr17:36452902-36452982 44 4.13e-04 TGTCTCCCTG CGCACGCG CGGCCGTACT chr1:161129178-161129258 34 4.49e-04 GGCGGGCTCA CGCAAGCG CCAAGGGACC chr1:142890984-142891064 50 4.49e-04 GGCCGGGCGG CGCAAGCG CAGAGAGAAA chr17:7518565-7518645 26 5.06e-04 GTTAGGGATG GGCATGCG CCTGAACGAC chr18:77748577-77748657 20 5.06e-04 GCGTGCTGAC GGCATGCG CGCGCGCTAG chr17:21831460-21831540 49 5.06e-04 ctcgccagtg cgcatgca cgaggccaga chr6:121655680-121655760 32 6.22e-04 CGAGCGCCTG TGCCTGCG CCCTCAGCTG chr17:58603573-58603653 51 7.70e-04 CGTAAGCGCA CGCCGGCG CGCCGGAGGG chrX:347978-348058 51 8.17e-04 CGGTCGGGTG AGCGTGCG CAATGGCTGC chr22:28315374-28315454 44 8.17e-04 CCTGCCGAAG AGCGTGCG GCTTCTACTG chr2:33824367-33824447 58 8.17e-04 GCATGTCCGG AGCGTGCG CAAGAAACTT chr17:80606317-80606397 16 9.41e-04 CGGAcgtacg tgcgtgcg tgctggatgt chr19:57874703-57874783 37 9.41e-04 TTtgcgtgcg tgcgtgcg tgcgtgcgtc chr13:28024310-28024390 28 9.41e-04 ACGTACTGCG TGCGTGCG TGCGCACAAA chrX:133507263-133507343 58 9.41e-04 GTGGGTCGTG TGCGTGCG AGGGGGGCGA chr20:35580141-35580221 27 1.16e-03 TGGCCTCCTG CGCAGGCT CACTGACAGT chr20:61493505-61493585 11 1.45e-03 TCCGTGCGTG CACGTGCG CCCCATTACA chrX:148622441-148622521 51 1.45e-03 GTGGTGTGCA TACATGCG TGATTGCGAG chr4:148605355-148605435 19 1.71e-03 TGGCCAGCGG CGCACGCT ACGCGAACGT chr1:35734190-35734270 36 1.71e-03 CCACTTACCG CGCACGCT CAGGACCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCATGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:44100392-44100472 3.8e-05 64_[+1]_8 chr17:17739535-17739615 3.8e-05 48_[+1]_24 chr6:41040331-41040411 3.8e-05 4_[+1]_68 chr1:154947360-154947440 3.8e-05 14_[+1]_58 chr3:46600022-46600102 3.8e-05 32_[+1]_40 chr7:157129599-157129679 3.8e-05 32_[+1]_40 chr1:167189771-167189851 3.8e-05 15_[+1]_57 chr20:25604599-25604679 3.8e-05 30_[+1]_42 chr22:42017245-42017325 3.8e-05 50_[+1]_22 chr11:8932702-8932782 3.8e-05 42_[+1]_30 chr4:144434530-144434610 3.8e-05 40_[+1]_32 chr5:77590518-77590598 3.8e-05 49_[+1]_23 chr4:6675601-6675681 3.8e-05 36_[+1]_36 chr16:27561216-27561296 3.8e-05 22_[+1]_50 chr12:25099526-25099606 3.8e-05 27_[+1]_45 chr3:75834706-75834786 3.8e-05 47_[+1]_25 chr19:50861778-50861858 3.8e-05 10_[+1]_62 chr6:88118149-88118229 3.8e-05 19_[+1]_53 chr15:90319852-90319932 3.8e-05 12_[+1]_60 chr9:140118061-140118141 3.8e-05 24_[+1]_48 chr12:106751783-10675186 3.8e-05 48_[+1]_24 chr19:37178454-37178534 3.8e-05 50_[+1]_22 chr17:73401855-73401935 3.8e-05 50_[+1]_22 chr22:46692620-46692700 3.8e-05 38_[+1]_34 chr16:70100143-70100223 3.8e-05 49_[+1]_23 chr16:4234021-4234101 3.8e-05 28_[+1]_44 chr7:5085431-5085511 3.8e-05 39_[+1]_33 chr19:7968501-7968581 3.8e-05 58_[+1]_14 chr12:57623420-57623500 3.8e-05 [+1]_72 chr7:56131890-56131970 3.8e-05 64_[+1]_8 chr3:184081110-184081190 3.8e-05 28_[+1]_44 chr20:25176222-25176302 3.8e-05 70_[+1]_2 chr12:120875653-12087573 3.8e-05 43_[+1]_29 chr6:52535834-52535914 3.8e-05 26_[+1]_46 chr19:36606058-36606138 3.8e-05 50_[+1]_22 chr1:170043850-170043930 3.8e-05 3_[+1]_69 chr20:42939849-42939929 3.8e-05 31_[+1]_41 chr16:15068521-15068601 3.8e-05 22_[+1]_50 chr12:54673917-54673997 3.8e-05 50_[+1]_22 chr20:3185040-3185120 3.8e-05 24_[+1]_48 chr3:52232068-52232148 3.8e-05 52_[+1]_20 chr7:99869855-99869935 3.8e-05 22_[+1]_50 chr7:25896677-25896757 3.8e-05 48_[+1]_24 chr5:43007796-43007876 3.8e-05 50_[+1]_22 chr15:78832719-78832799 3.8e-05 50_[+1]_22 chr20:35402188-35402268 3.8e-05 26_[+1]_46 chr19:44259072-44259152 3.8e-05 7_[+1]_65 chr14:35451726-35451806 3.8e-05 47_[+1]_25 chr5:175395246-175395326 3.8e-05 41_[+1]_31 chr19:5622947-5623027 3.8e-05 14_[+1]_58 chr18:47808102-47808182 3.8e-05 30_[+1]_42 chr11:63448880-63448960 3.8e-05 40_[+1]_32 chr21:40759666-40759746 3.8e-05 21_[+1]_51 chr12:121063713-12106379 3.8e-05 35_[+1]_37 chr18:71815065-71815145 3.8e-05 47_[+1]_25 chr17:21030153-21030233 3.8e-05 41_[+1]_31 chr16:14164898-14164978 3.8e-05 23_[+1]_49 chr19:984680-984760 3.8e-05 19_[+1]_53 chr11:76092323-76092403 3.8e-05 40_[+1]_32 chr11:61582751-61582831 3.8e-05 11_[+1]_61 chr3:127293886-127293966 3.8e-05 27_[+1]_45 chr12:9436213-9436293 3.8e-05 28_[+1]_44 chr1:151170961-151171041 3.8e-05 49_[+1]_23 chr22:38349617-38349697 3.8e-05 14_[+1]_58 chr3:119396312-119396392 3.8e-05 48_[+1]_24 chr2:37423608-37423688 3.8e-05 23_[+1]_49 chr18:19320713-19320793 3.8e-05 24_[+1]_48 chr7:11013404-11013484 3.8e-05 39_[+1]_33 chr14:64854930-64855010 3.8e-05 44_[+1]_28 chr20:25834639-25834719 3.8e-05 55_[+1]_17 chr2:37311610-37311690 3.8e-05 47_[+1]_25 chr19:40324885-40324965 3.8e-05 24_[+1]_48 chr2:99758104-99758184 3.8e-05 48_[+1]_24 chr10:99185871-99185951 3.8e-05 19_[+1]_53 chr12:9600790-9600870 3.8e-05 30_[+1]_42 chr9:71394905-71394985 3.8e-05 46_[+1]_26 chr17:8103563-8103643 3.8e-05 29_[+1]_43 chr5:162887111-162887191 3.8e-05 45_[+1]_27 chr10:15001268-15001348 3.8e-05 25_[+1]_47 chr5:112043121-112043201 3.8e-05 66_[+1]_6 chr7:6746566-6746646 3.8e-05 24_[+1]_48 chr19:38210654-38210734 3.8e-05 23_[+1]_49 chr19:11616711-11616791 3.8e-05 28_[+1]_44 chr19:5720593-5720673 3.8e-05 61_[+1]_11 chr7:6388641-6388721 3.8e-05 47_[+1]_25 chr12:31226750-31226830 3.8e-05 24_[+1]_48 chr2:216979572-216979652 3.8e-05 35_[+1]_37 chr13:49106839-49106919 3.8e-05 50_[+1]_22 chr22:25843991-25844071 3.8e-05 10_[+1]_62 chr1:100731670-100731750 3.8e-05 44_[+1]_28 chr3:135915236-135915316 3.8e-05 50_[+1]_22 chr17:47439864-47439944 3.8e-05 31_[+1]_41 chr16:71598815-71598895 3.8e-05 36_[+1]_36 chr2:27357472-27357552 3.8e-05 33_[+1]_39 chr14:102771500-10277158 3.8e-05 23_[+1]_49 chr10:1851472-1851552 3.8e-05 43_[+1]_29 chr6:122793021-122793101 3.8e-05 45_[+1]_27 chr16:27215154-27215234 3.8e-05 64_[+1]_8 chr14:75518174-75518254 3.8e-05 42_[+1]_30 chr14:23058113-23058193 3.8e-05 25_[+1]_47 chr2:190526068-190526148 3.8e-05 29_[+1]_43 chrX:15692938-15693018 3.8e-05 52_[+1]_20 chr4:54243760-54243840 3.8e-05 48_[+1]_24 chr17:63534167-63534247 3.8e-05 34_[+1]_38 chr19:48867249-48867329 3.8e-05 62_[+1]_10 chr19:9434820-9434900 3.8e-05 31_[+1]_41 chr9:124922018-124922098 3.8e-05 35_[+1]_37 chr13:20357162-20357242 3.8e-05 42_[+1]_30 chr5:52095846-52095926 3.8e-05 70_[+1]_2 chr3:120315001-120315081 3.8e-05 23_[+1]_49 chr19:42721905-42721985 3.8e-05 25_[+1]_47 chr11:18417745-18417825 3.8e-05 21_[+1]_51 chr19:35615520-35615600 3.8e-05 58_[+1]_14 chr10:27389422-27389502 3.8e-05 6_[+1]_66 chr19:40023486-40023566 3.8e-05 16_[+1]_56 chrX:54835285-54835365 3.8e-05 11_[+1]_61 chr17:47754901-47754981 3.8e-05 23_[+1]_49 chr6:164461227-164461307 3.8e-05 11_[+1]_61 chr5:42909082-42909162 3.8e-05 30_[+1]_42 chr17:259906-259986 3.8e-05 17_[+1]_55 chr19:9420486-9420566 3.8e-05 21_[+1]_51 chr19:46406082-46406162 3.8e-05 64_[+1]_8 chr5:169010581-169010661 0.00011 24_[+1]_48 chr19:16222133-16222213 0.00011 48_[+1]_24 chr6:153304743-153304823 0.00011 69_[+1]_3 chr1:3773791-3773871 0.00011 30_[+1]_42 chr3:150320999-150321079 0.00011 62_[+1]_10 chr19:11670154-11670234 0.00011 46_[+1]_26 chr2:91847951-91848031 0.00011 38_[+1]_34 chr5:138678046-138678126 0.00011 26_[+1]_46 chr1:39339032-39339112 0.00011 31_[+1]_41 chr1:231473628-231473708 0.00011 17_[+1]_55 chr15:101626631-10162671 0.00011 28_[+1]_44 chr18:10525833-10525913 0.00011 10_[+1]_62 chr17:34257739-34257819 0.00011 37_[+1]_35 chr11:65101247-65101327 0.00011 8_[+1]_64 chr17:27169802-27169882 0.00011 23_[+1]_49 chr12:69753447-69753527 0.00011 48_[+1]_24 chr20:30539803-30539883 0.00011 56_[+1]_16 chr21:46293722-46293802 0.00011 21_[+1]_51 chr21:48055439-48055519 0.00011 71_[+1]_1 chr3:197354789-197354869 0.00011 26_[+1]_46 chr8:117887092-117887172 0.00011 8_[+1]_64 chr3:195717202-195717282 0.00011 23_[+1]_49 chr21:35747666-35747746 0.00011 43_[+1]_29 chr7:50518030-50518110 0.00011 21_[+1]_51 chr10:124639101-12463918 0.00011 2_[+1]_70 chr9:139685764-139685844 0.00011 22_[+1]_50 chr7:149444-149524 0.00011 24_[+1]_48 chr19:6199692-6199772 0.00011 6_[+1]_66 chr17:7210671-7210751 0.00011 60_[+1]_12 chr10:124713864-12471394 0.00013 62_[+1]_10 chr14:24036742-24036822 0.00013 13_[+1]_59 chr6:24403100-24403180 0.00013 8_[+1]_64 chr5:133561966-133562046 0.00013 49_[+1]_23 chr2:3522767-3522847 0.00013 8_[+1]_64 chr2:26256886-26256966 0.00025 [+1]_72 chr10:16859620-16859700 0.00025 44_[+1]_28 chr21:34697215-34697295 0.00025 4_[+1]_68 chr7:76178565-76178645 0.00025 50_[+1]_22 chr7:72349865-72349945 0.00025 28_[+1]_44 chr17:36714575-36714655 0.00025 1_[+1]_71 chr3:48594462-48594542 0.00025 9_[+1]_63 chr7:102004248-102004328 0.00025 47_[+1]_25 chr19:56915368-56915448 0.00025 18_[+1]_54 chr17:45570014-45570094 0.00025 7_[+1]_65 chr19:40030795-40030875 0.00025 5_[+1]_67 chr7:149570999-149571079 0.00025 11_[+1]_61 chr12:27090906-27090986 0.00025 12_[+1]_60 chr5:132073333-132073413 0.00025 41_[+1]_31 chr12:13080554-13080634 0.00025 26_[+1]_46 chr5:130500981-130501061 0.00025 48_[+1]_24 chrX:48456465-48456545 0.00025 4_[+1]_68 chr22:24199986-24200066 0.00025 60_[+1]_12 chr7:6487593-6487673 0.00025 10_[+1]_62 chr17:3571978-3572058 0.00032 69_[+1]_3 chr19:56135960-56136040 0.00032 45_[+1]_27 chr2:70475871-70475951 0.00032 49_[+1]_23 chr6:30614750-30614830 0.00032 37_[+1]_35 chr1:91966385-91966465 0.00032 26_[+1]_46 chr14:96968632-96968712 0.00032 44_[+1]_28 chr9:131580593-131580673 0.00032 26_[+1]_46 chr2:227700738-227700818 0.00032 44_[+1]_28 chr12:120554652-12055473 0.00032 11_[+1]_61 chr17:37213249-37213329 0.00032 15_[+1]_57 chr19:50169179-50169259 0.00032 48_[+1]_24 chr3:195384798-195384878 0.00032 13_[+1]_59 chr1:176176679-176176759 0.00032 6_[+1]_66 chr17:27278691-27278771 0.00032 8_[+1]_64 chr16:188714-188794 0.00032 39_[+1]_33 chr20:37101342-37101422 0.00032 2_[+1]_70 chr2:113012701-113012781 0.00032 69_[+1]_3 chr20:34042599-34042679 0.00032 25_[+1]_47 chr19:3762945-3763025 0.00032 2_[+1]_70 chr5:218294-218374 0.00032 24_[+1]_48 chr13:50656282-50656362 0.00034 25_[+1]_47 chr8:94753275-94753355 0.00041 22_[+1]_50 chr6:99872758-99872838 0.00041 27_[+1]_45 chr7:100861362-100861442 0.00041 10_[+1]_62 chr19:6678092-6678172 0.00041 46_[+1]_26 chr21:43430148-43430228 0.00041 48_[+1]_24 chr4:26862211-26862291 0.00041 52_[+1]_20 chr17:36452902-36452982 0.00041 43_[+1]_29 chr1:161129178-161129258 0.00045 33_[+1]_39 chr1:142890984-142891064 0.00045 49_[+1]_23 chr17:7518565-7518645 0.00051 25_[+1]_47 chr18:77748577-77748657 0.00051 19_[+1]_53 chr17:21831460-21831540 0.00051 48_[+1]_24 chr6:121655680-121655760 0.00062 31_[+1]_41 chr17:58603573-58603653 0.00077 50_[+1]_22 chrX:347978-348058 0.00082 50_[+1]_22 chr22:28315374-28315454 0.00082 43_[+1]_29 chr2:33824367-33824447 0.00082 57_[+1]_15 chr17:80606317-80606397 0.00094 15_[+1]_57 chr19:57874703-57874783 0.00094 36_[+1]_36 chr13:28024310-28024390 0.00094 27_[+1]_45 chrX:133507263-133507343 0.00094 57_[+1]_15 chr20:35580141-35580221 0.0012 26_[+1]_46 chr20:61493505-61493585 0.0015 10_[+1]_62 chrX:148622441-148622521 0.0015 50_[+1]_22 chr4:148605355-148605435 0.0017 18_[+1]_54 chr1:35734190-35734270 0.0017 35_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCATGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCATGCG width=8 seqs=222 chr19:44100392-44100472 ( 65) CGCATGCG 1 chr17:17739535-17739615 ( 49) CGCATGCG 1 chr6:41040331-41040411 ( 5) CGCATGCG 1 chr1:154947360-154947440 ( 15) CGCATGCG 1 chr3:46600022-46600102 ( 33) CGCATGCG 1 chr7:157129599-157129679 ( 33) CGCATGCG 1 chr1:167189771-167189851 ( 16) CGCATGCG 1 chr20:25604599-25604679 ( 31) CGCATGCG 1 chr22:42017245-42017325 ( 51) CGCATGCG 1 chr11:8932702-8932782 ( 43) CGCATGCG 1 chr4:144434530-144434610 ( 41) CGCATGCG 1 chr5:77590518-77590598 ( 50) CGCATGCG 1 chr4:6675601-6675681 ( 37) CGCATGCG 1 chr16:27561216-27561296 ( 23) CGCATGCG 1 chr12:25099526-25099606 ( 28) CGCATGCG 1 chr3:75834706-75834786 ( 48) CGCATGCG 1 chr19:50861778-50861858 ( 11) CGCATGCG 1 chr6:88118149-88118229 ( 20) CGCATGCG 1 chr15:90319852-90319932 ( 13) CGCATGCG 1 chr9:140118061-140118141 ( 25) CGCATGCG 1 chr12:106751783-10675186 ( 49) CGCATGCG 1 chr19:37178454-37178534 ( 51) CGCATGCG 1 chr17:73401855-73401935 ( 51) CGCATGCG 1 chr22:46692620-46692700 ( 39) CGCATGCG 1 chr16:70100143-70100223 ( 50) CGCATGCG 1 chr16:4234021-4234101 ( 29) CGCATGCG 1 chr7:5085431-5085511 ( 40) CGCATGCG 1 chr19:7968501-7968581 ( 59) CGCATGCG 1 chr12:57623420-57623500 ( 1) CGCATGCG 1 chr7:56131890-56131970 ( 65) CGCATGCG 1 chr3:184081110-184081190 ( 29) CGCATGCG 1 chr20:25176222-25176302 ( 71) CGCATGCG 1 chr12:120875653-12087573 ( 44) CGCATGCG 1 chr6:52535834-52535914 ( 27) CGCATGCG 1 chr19:36606058-36606138 ( 51) CGCATGCG 1 chr1:170043850-170043930 ( 4) CGCATGCG 1 chr20:42939849-42939929 ( 32) CGCATGCG 1 chr16:15068521-15068601 ( 23) CGCATGCG 1 chr12:54673917-54673997 ( 51) CGCATGCG 1 chr20:3185040-3185120 ( 25) CGCATGCG 1 chr3:52232068-52232148 ( 53) CGCATGCG 1 chr7:99869855-99869935 ( 23) CGCATGCG 1 chr7:25896677-25896757 ( 49) CGCATGCG 1 chr5:43007796-43007876 ( 51) CGCATGCG 1 chr15:78832719-78832799 ( 51) CGCATGCG 1 chr20:35402188-35402268 ( 27) CGCATGCG 1 chr19:44259072-44259152 ( 8) CGCATGCG 1 chr14:35451726-35451806 ( 48) CGCATGCG 1 chr5:175395246-175395326 ( 42) CGCATGCG 1 chr19:5622947-5623027 ( 15) CGCATGCG 1 chr18:47808102-47808182 ( 31) CGCATGCG 1 chr11:63448880-63448960 ( 41) CGCATGCG 1 chr21:40759666-40759746 ( 22) CGCATGCG 1 chr12:121063713-12106379 ( 36) CGCATGCG 1 chr18:71815065-71815145 ( 48) CGCATGCG 1 chr17:21030153-21030233 ( 42) CGCATGCG 1 chr16:14164898-14164978 ( 24) CGCATGCG 1 chr19:984680-984760 ( 20) CGCATGCG 1 chr11:76092323-76092403 ( 41) CGCATGCG 1 chr11:61582751-61582831 ( 12) CGCATGCG 1 chr3:127293886-127293966 ( 28) CGCATGCG 1 chr12:9436213-9436293 ( 29) CGCATGCG 1 chr1:151170961-151171041 ( 50) CGCATGCG 1 chr22:38349617-38349697 ( 15) CGCATGCG 1 chr3:119396312-119396392 ( 49) CGCATGCG 1 chr2:37423608-37423688 ( 24) CGCATGCG 1 chr18:19320713-19320793 ( 25) CGCATGCG 1 chr7:11013404-11013484 ( 40) CGCATGCG 1 chr14:64854930-64855010 ( 45) CGCATGCG 1 chr20:25834639-25834719 ( 56) CGCATGCG 1 chr2:37311610-37311690 ( 48) CGCATGCG 1 chr19:40324885-40324965 ( 25) CGCATGCG 1 chr2:99758104-99758184 ( 49) CGCATGCG 1 chr10:99185871-99185951 ( 20) CGCATGCG 1 chr12:9600790-9600870 ( 31) CGCATGCG 1 chr9:71394905-71394985 ( 47) CGCATGCG 1 chr17:8103563-8103643 ( 30) CGCATGCG 1 chr5:162887111-162887191 ( 46) CGCATGCG 1 chr10:15001268-15001348 ( 26) CGCATGCG 1 chr5:112043121-112043201 ( 67) CGCATGCG 1 chr7:6746566-6746646 ( 25) CGCATGCG 1 chr19:38210654-38210734 ( 24) CGCATGCG 1 chr19:11616711-11616791 ( 29) CGCATGCG 1 chr19:5720593-5720673 ( 62) CGCATGCG 1 chr7:6388641-6388721 ( 48) CGCATGCG 1 chr12:31226750-31226830 ( 25) CGCATGCG 1 chr2:216979572-216979652 ( 36) CGCATGCG 1 chr13:49106839-49106919 ( 51) CGCATGCG 1 chr22:25843991-25844071 ( 11) CGCATGCG 1 chr1:100731670-100731750 ( 45) CGCATGCG 1 chr3:135915236-135915316 ( 51) CGCATGCG 1 chr17:47439864-47439944 ( 32) CGCATGCG 1 chr16:71598815-71598895 ( 37) CGCATGCG 1 chr2:27357472-27357552 ( 34) CGCATGCG 1 chr14:102771500-10277158 ( 24) CGCATGCG 1 chr10:1851472-1851552 ( 44) CGCATGCG 1 chr6:122793021-122793101 ( 46) CGCATGCG 1 chr16:27215154-27215234 ( 65) CGCATGCG 1 chr14:75518174-75518254 ( 43) CGCATGCG 1 chr14:23058113-23058193 ( 26) CGCATGCG 1 chr2:190526068-190526148 ( 30) CGCATGCG 1 chrX:15692938-15693018 ( 53) CGCATGCG 1 chr4:54243760-54243840 ( 49) CGCATGCG 1 chr17:63534167-63534247 ( 35) CGCATGCG 1 chr19:48867249-48867329 ( 63) CGCATGCG 1 chr19:9434820-9434900 ( 32) CGCATGCG 1 chr9:124922018-124922098 ( 36) CGCATGCG 1 chr13:20357162-20357242 ( 43) CGCATGCG 1 chr5:52095846-52095926 ( 71) CGCATGCG 1 chr3:120315001-120315081 ( 24) CGCATGCG 1 chr19:42721905-42721985 ( 26) CGCATGCG 1 chr11:18417745-18417825 ( 22) CGCATGCG 1 chr19:35615520-35615600 ( 59) CGCATGCG 1 chr10:27389422-27389502 ( 7) CGCATGCG 1 chr19:40023486-40023566 ( 17) CGCATGCG 1 chrX:54835285-54835365 ( 12) CGCATGCG 1 chr17:47754901-47754981 ( 24) CGCATGCG 1 chr6:164461227-164461307 ( 12) CGCATGCG 1 chr5:42909082-42909162 ( 31) CGCATGCG 1 chr17:259906-259986 ( 18) CGCATGCG 1 chr19:9420486-9420566 ( 22) CGCATGCG 1 chr19:46406082-46406162 ( 65) CGCATGCG 1 chr5:169010581-169010661 ( 25) CGCCTGCG 1 chr19:16222133-16222213 ( 49) CGCCTGCG 1 chr6:153304743-153304823 ( 70) CGCCTGCG 1 chr1:3773791-3773871 ( 31) CGCCTGCG 1 chr3:150320999-150321079 ( 63) CGCCTGCG 1 chr19:11670154-11670234 ( 47) CGCCTGCG 1 chr2:91847951-91848031 ( 39) CGCCTGCG 1 chr5:138678046-138678126 ( 27) CGCCTGCG 1 chr1:39339032-39339112 ( 32) CGCCTGCG 1 chr1:231473628-231473708 ( 18) CGCCTGCG 1 chr15:101626631-10162671 ( 29) CGCCTGCG 1 chr18:10525833-10525913 ( 11) CGCCTGCG 1 chr17:34257739-34257819 ( 38) CGCCTGCG 1 chr11:65101247-65101327 ( 9) CGCCTGCG 1 chr17:27169802-27169882 ( 24) CGCCTGCG 1 chr12:69753447-69753527 ( 49) CGCCTGCG 1 chr20:30539803-30539883 ( 57) CGCCTGCG 1 chr21:46293722-46293802 ( 22) CGCCTGCG 1 chr21:48055439-48055519 ( 72) CGCCTGCG 1 chr3:197354789-197354869 ( 27) CGCCTGCG 1 chr8:117887092-117887172 ( 9) CGCCTGCG 1 chr3:195717202-195717282 ( 24) CGCCTGCG 1 chr21:35747666-35747746 ( 44) CGCCTGCG 1 chr7:50518030-50518110 ( 22) CGCCTGCG 1 chr10:124639101-12463918 ( 3) CGCCTGCG 1 chr9:139685764-139685844 ( 23) CGCCTGCG 1 chr7:149444-149524 ( 25) CGCCTGCG 1 chr19:6199692-6199772 ( 7) CGCCTGCG 1 chr17:7210671-7210751 ( 61) CGCCTGCG 1 chr10:124713864-12471394 ( 63) AGCATGCG 1 chr14:24036742-24036822 ( 14) AGCATGCG 1 chr6:24403100-24403180 ( 9) AGCATGCG 1 chr5:133561966-133562046 ( 50) AGCATGCG 1 chr2:3522767-3522847 ( 9) AGCATGCG 1 chr2:26256886-26256966 ( 1) CGCGTGCG 1 chr10:16859620-16859700 ( 45) CGCGTGCG 1 chr21:34697215-34697295 ( 5) CGCGTGCG 1 chr7:76178565-76178645 ( 51) CGCGTGCG 1 chr7:72349865-72349945 ( 29) CGCGTGCG 1 chr17:36714575-36714655 ( 2) CGCATGCT 1 chr3:48594462-48594542 ( 10) CGCATGCT 1 chr7:102004248-102004328 ( 48) CGCGTGCG 1 chr19:56915368-56915448 ( 19) CGCGTGCG 1 chr17:45570014-45570094 ( 8) CGCGTGCG 1 chr19:40030795-40030875 ( 6) CGCGTGCG 1 chr7:149570999-149571079 ( 12) CGCGTGCG 1 chr12:27090906-27090986 ( 13) CGCGTGCG 1 chr5:132073333-132073413 ( 42) CGCGTGCG 1 chr12:13080554-13080634 ( 27) CGCATGCT 1 chr5:130500981-130501061 ( 49) CGCGTGCG 1 chrX:48456465-48456545 ( 5) TGCATGCG 1 chr22:24199986-24200066 ( 61) CGCGTGCG 1 chr7:6487593-6487673 ( 11) CGCATGCT 1 chr17:3571978-3572058 ( 70) CGCAGGCG 1 chr19:56135960-56136040 ( 46) CGCAGGCG 1 chr2:70475871-70475951 ( 50) CGCAGGCG 1 chr6:30614750-30614830 ( 38) CGCAGGCG 1 chr1:91966385-91966465 ( 27) CGCAGGCG 1 chr14:96968632-96968712 ( 45) CGCAGGCG 1 chr9:131580593-131580673 ( 27) CGCAGGCG 1 chr2:227700738-227700818 ( 45) CGCAGGCG 1 chr12:120554652-12055473 ( 12) CGCAGGCG 1 chr17:37213249-37213329 ( 16) CGCAGGCG 1 chr19:50169179-50169259 ( 49) CGCAGGCG 1 chr3:195384798-195384878 ( 14) CGCAGGCG 1 chr1:176176679-176176759 ( 7) CGCAGGCG 1 chr17:27278691-27278771 ( 9) CGCAGGCG 1 chr16:188714-188794 ( 40) CGCAGGCG 1 chr20:37101342-37101422 ( 3) CGCAGGCG 1 chr2:113012701-113012781 ( 70) CGCAGGCG 1 chr20:34042599-34042679 ( 26) CGCAGGCG 1 chr19:3762945-3763025 ( 3) CGCAGGCG 1 chr5:218294-218374 ( 25) CGCAGGCG 1 chr13:50656282-50656362 ( 26) CACATGCG 1 chr8:94753275-94753355 ( 23) CGCACGCG 1 chr6:99872758-99872838 ( 28) CGCACGCG 1 chr7:100861362-100861442 ( 11) CGCACGCG 1 chr19:6678092-6678172 ( 47) CGCACGCG 1 chr21:43430148-43430228 ( 49) CGCACGCG 1 chr4:26862211-26862291 ( 53) CGCACGCG 1 chr17:36452902-36452982 ( 44) CGCACGCG 1 chr1:161129178-161129258 ( 34) CGCAAGCG 1 chr1:142890984-142891064 ( 50) CGCAAGCG 1 chr17:7518565-7518645 ( 26) GGCATGCG 1 chr18:77748577-77748657 ( 20) GGCATGCG 1 chr17:21831460-21831540 ( 49) CGCATGCA 1 chr6:121655680-121655760 ( 32) TGCCTGCG 1 chr17:58603573-58603653 ( 51) CGCCGGCG 1 chrX:347978-348058 ( 51) AGCGTGCG 1 chr22:28315374-28315454 ( 44) AGCGTGCG 1 chr2:33824367-33824447 ( 58) AGCGTGCG 1 chr17:80606317-80606397 ( 16) TGCGTGCG 1 chr19:57874703-57874783 ( 37) TGCGTGCG 1 chr13:28024310-28024390 ( 28) TGCGTGCG 1 chrX:133507263-133507343 ( 58) TGCGTGCG 1 chr20:35580141-35580221 ( 27) CGCAGGCT 1 chr20:61493505-61493585 ( 11) CACGTGCG 1 chrX:148622441-148622521 ( 51) TACATGCG 1 chr4:148605355-148605435 ( 19) CGCACGCT 1 chr1:35734190-35734270 ( 36) CGCACGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCATGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.94625 E= 3.5e-309 -219 147 -520 -244 -361 -1444 158 -1444 -1444 158 -1444 -1444 221 -126 -174 -1444 -419 -304 -174 232 -1444 -1444 160 -1444 -1444 158 -1444 -1444 -519 -1444 154 -244 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCATGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 222 E= 3.5e-309 0.036036 0.923423 0.009009 0.031532 0.013514 0.000000 0.986486 0.000000 0.000000 1.000000 0.000000 0.000000 0.761261 0.139640 0.099099 0.000000 0.009009 0.040541 0.099099 0.851351 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.004505 0.000000 0.963964 0.031532 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCATGCG MEME-1 regular expression -------------------------------------------------------------------------------- CGCATGCG -------------------------------------------------------------------------------- Time 4.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGCATG MEME-2 width = 8 sites = 51 llr = 409 E-value = 1.3e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGCATG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::913 pos.-specific C ::a:a:2: probability G :a:a:126 matrix T a:::::51 bits 2.6 * 2.3 * 2.1 * 1.8 * * Relative 1.6 *** * Entropy 1.3 ****** (11.6 bits) 1.0 ****** 0.8 ****** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCGCATG consensus GA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCATG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:57970309-57970389 36 1.94e-05 GCTGGTGTTT TGCGCATG TTTCTGCCAG chr12:106751783-10675186 66 1.94e-05 GCCGGGCTTC TGCGCATG CCCAGAG chr7:56131890-56131970 21 1.94e-05 TGGCGCAGCC TGCGCATG TGCATAGGGG chr17:8103563-8103643 64 1.94e-05 ggcaggccac tgcgcatg cggcaatta chr7:149570999-149571079 61 1.94e-05 CGACTCCTGT TGCGCATG CTCAGCGCGC chr2:216979572-216979652 12 1.94e-05 ctactgagca tgcgcatg actagtaacc chr12:13080554-13080634 64 1.94e-05 GGCCacacac tgcgcatg ctcccctcc chr10:124639101-12463918 45 1.94e-05 GGCCTGCCAG TGCGCATG CTCCGCTCTT chr2:33824367-33824447 45 1.94e-05 GCTCCCGCAC TGCGCATG TCCGGAGCGT chr19:40023486-40023566 66 1.94e-05 TGCCAGAGTG TGCGCATG CGTAAGC chr6:164461227-164461307 47 1.94e-05 ggcttgatct tgcgcatg cgcaggcctc chr12:69753447-69753527 28 2.91e-05 GTACACTGCG TGCGCATA CGCGAGCCCG chr5:112043121-112043201 14 2.91e-05 CCATTGCGCC TGCGCATA ACAGGCTCTA chr6:153304743-153304823 24 6.66e-05 CCCACGCCTC TGCGCAGG CGCCTTGGCG chr1:170043850-170043930 32 6.66e-05 ACCTCTTGTA TGCGCAGG CTCAGTCTGA chr5:175395246-175395326 72 6.66e-05 ACGGCCCCTC TGCGCAGG C chr3:195384798-195384878 64 6.66e-05 CGTGTCGTGG TGCGCAGG CGCGATGTC chr7:6746566-6746646 61 6.66e-05 GGGGTGCACA TGCGCAGG AATGCACCGG chr5:130500981-130501061 10 6.66e-05 AGCCAAGCC TGCGCAGG TGCCCCGGCT chr5:218294-218374 72 6.66e-05 TCCGGCGTGG TGCGCAGG C chr17:3571978-3572058 22 1.23e-04 TCCCTGCGCG TGCGCAGA AAAGCGGGCA chr1:167189771-167189851 60 1.23e-04 AAGGCGCGCA TGCGCAGA GCCGAGACGA chr20:3185040-3185120 48 1.23e-04 CCCGCCCAGG TGCGCACG CGCAGGAGCC chr3:52232068-52232148 27 1.23e-04 GCGGCGCGCC TGCGCAGA AGAAGGCAGC chr20:30539803-30539883 24 1.23e-04 CGACTCCCGC TGCGCACG CGCCGCTCTC chr10:27389422-27389502 42 1.23e-04 TCCACGCGCG TGCGCACG AAGGCCCAGT chr16:27561216-27561296 65 1.42e-04 CCATCGCGCC TGCGCACA ACGATCCG chr19:5622947-5623027 66 1.42e-04 GCAACGCGTC TGCGCACA TCCCCGC chr11:76092323-76092403 7 1.42e-04 TGCGAC TGCGCACA GTCTAATCCG chr5:133561966-133562046 61 1.42e-04 GCATGCGCAG TGCGCACA GCGGCGAACC chr12:27090906-27090986 55 1.42e-04 ggctcgcgcg tgcgcaca gcgcTCTCCG chr13:28024310-28024390 36 1.42e-04 CGTGCGTGCG TGCGCACA AACGAGGGCG chr17:63534167-63534247 60 1.42e-04 cccacgcacA TGCGCACA CCCTAACGCA chr17:259906-259986 65 1.42e-04 GATGTACGCA TGCGCACA ACGCTCTG chr6:41040331-41040411 50 1.52e-04 AAGTGGCGCT TGCGCATT AGCCGCAGGG chr6:30614750-30614830 1 1.71e-04 . TGCGCAAG CGCACTCAGG chr22:28315374-28315454 66 1.71e-04 CTACTGCGGC TGCGCAAG CTCGACG chr19:48867249-48867329 1 1.80e-04 . TGCGCAAA GCTTCGGTCA chr5:169010581-169010661 54 2.00e-04 GCGCGCCACT TGCACATG CGCAGTAGCT chr20:34042599-34042679 54 2.00e-04 CAGGTGACCT TGCACATG CGCTGTATGT chr16:27215154-27215234 34 2.00e-04 GTTCCGCGCG TGCGTATG CTCGTCTCTT chr4:6675601-6675681 71 2.48e-04 tgcgtgcaag tgcgcgtg cg chr7:5085431-5085511 6 2.48e-04 ACTCC TGCGCGTG TGCACCTCTC chr7:76178565-76178645 17 2.48e-04 GGTGCACTCC TGCGCGTG TGCACCTCTC chr5:138678046-138678126 61 2.48e-04 CCCTACTTGC TGCGCGTG CGCGCCTCAG chr7:102004248-102004328 14 2.48e-04 GGTGCACTCC TGCGCGTG TGCACCTCTC chr18:77748577-77748657 60 2.48e-04 TGACGGCATG TGCGTATA GGCGCCGCGC chr19:9434820-9434900 5 2.48e-04 CCTT TGCGCGTG CGCGGCGTGT chr13:20357162-20357242 59 2.48e-04 CGCATAACGC TGCGCGTG CAATCGACAA chr19:50861778-50861858 51 2.87e-04 GAACTGCGCC TGCGCAGT CTCTCCCCAT chr14:102771500-10277158 56 2.87e-04 CATGTACGCG TGCGCAGT GCAGCCCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCATG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:57970309-57970389 1.9e-05 35_[+2]_37 chr12:106751783-10675186 1.9e-05 65_[+2]_7 chr7:56131890-56131970 1.9e-05 20_[+2]_52 chr17:8103563-8103643 1.9e-05 63_[+2]_9 chr7:149570999-149571079 1.9e-05 60_[+2]_12 chr2:216979572-216979652 1.9e-05 11_[+2]_61 chr12:13080554-13080634 1.9e-05 63_[+2]_9 chr10:124639101-12463918 1.9e-05 44_[+2]_28 chr2:33824367-33824447 1.9e-05 44_[+2]_28 chr19:40023486-40023566 1.9e-05 65_[+2]_7 chr6:164461227-164461307 1.9e-05 46_[+2]_26 chr12:69753447-69753527 2.9e-05 27_[+2]_45 chr5:112043121-112043201 2.9e-05 13_[+2]_59 chr6:153304743-153304823 6.7e-05 23_[+2]_49 chr1:170043850-170043930 6.7e-05 31_[+2]_41 chr5:175395246-175395326 6.7e-05 71_[+2]_1 chr3:195384798-195384878 6.7e-05 63_[+2]_9 chr7:6746566-6746646 6.7e-05 60_[+2]_12 chr5:130500981-130501061 6.7e-05 9_[+2]_63 chr5:218294-218374 6.7e-05 71_[+2]_1 chr17:3571978-3572058 0.00012 21_[+2]_51 chr1:167189771-167189851 0.00012 59_[+2]_13 chr20:3185040-3185120 0.00012 47_[+2]_25 chr3:52232068-52232148 0.00012 26_[+2]_46 chr20:30539803-30539883 0.00012 23_[+2]_49 chr10:27389422-27389502 0.00012 41_[+2]_31 chr16:27561216-27561296 0.00014 64_[+2]_8 chr19:5622947-5623027 0.00014 65_[+2]_7 chr11:76092323-76092403 0.00014 6_[+2]_66 chr5:133561966-133562046 0.00014 60_[+2]_12 chr12:27090906-27090986 0.00014 54_[+2]_18 chr13:28024310-28024390 0.00014 35_[+2]_37 chr17:63534167-63534247 0.00014 59_[+2]_13 chr17:259906-259986 0.00014 64_[+2]_8 chr6:41040331-41040411 0.00015 49_[+2]_23 chr6:30614750-30614830 0.00017 [+2]_72 chr22:28315374-28315454 0.00017 65_[+2]_7 chr19:48867249-48867329 0.00018 [+2]_72 chr5:169010581-169010661 0.0002 53_[+2]_19 chr20:34042599-34042679 0.0002 53_[+2]_19 chr16:27215154-27215234 0.0002 33_[+2]_39 chr4:6675601-6675681 0.00025 70_[+2]_2 chr7:5085431-5085511 0.00025 5_[+2]_67 chr7:76178565-76178645 0.00025 16_[+2]_56 chr5:138678046-138678126 0.00025 60_[+2]_12 chr7:102004248-102004328 0.00025 13_[+2]_59 chr18:77748577-77748657 0.00025 59_[+2]_13 chr19:9434820-9434900 0.00025 4_[+2]_68 chr13:20357162-20357242 0.00025 58_[+2]_14 chr19:50861778-50861858 0.00029 50_[+2]_22 chr14:102771500-10277158 0.00029 55_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCATG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGCATG width=8 seqs=51 chr17:57970309-57970389 ( 36) TGCGCATG 1 chr12:106751783-10675186 ( 66) TGCGCATG 1 chr7:56131890-56131970 ( 21) TGCGCATG 1 chr17:8103563-8103643 ( 64) TGCGCATG 1 chr7:149570999-149571079 ( 61) TGCGCATG 1 chr2:216979572-216979652 ( 12) TGCGCATG 1 chr12:13080554-13080634 ( 64) TGCGCATG 1 chr10:124639101-12463918 ( 45) TGCGCATG 1 chr2:33824367-33824447 ( 45) TGCGCATG 1 chr19:40023486-40023566 ( 66) TGCGCATG 1 chr6:164461227-164461307 ( 47) TGCGCATG 1 chr12:69753447-69753527 ( 28) TGCGCATA 1 chr5:112043121-112043201 ( 14) TGCGCATA 1 chr6:153304743-153304823 ( 24) TGCGCAGG 1 chr1:170043850-170043930 ( 32) TGCGCAGG 1 chr5:175395246-175395326 ( 72) TGCGCAGG 1 chr3:195384798-195384878 ( 64) TGCGCAGG 1 chr7:6746566-6746646 ( 61) TGCGCAGG 1 chr5:130500981-130501061 ( 10) TGCGCAGG 1 chr5:218294-218374 ( 72) TGCGCAGG 1 chr17:3571978-3572058 ( 22) TGCGCAGA 1 chr1:167189771-167189851 ( 60) TGCGCAGA 1 chr20:3185040-3185120 ( 48) TGCGCACG 1 chr3:52232068-52232148 ( 27) TGCGCAGA 1 chr20:30539803-30539883 ( 24) TGCGCACG 1 chr10:27389422-27389502 ( 42) TGCGCACG 1 chr16:27561216-27561296 ( 65) TGCGCACA 1 chr19:5622947-5623027 ( 66) TGCGCACA 1 chr11:76092323-76092403 ( 7) TGCGCACA 1 chr5:133561966-133562046 ( 61) TGCGCACA 1 chr12:27090906-27090986 ( 55) TGCGCACA 1 chr13:28024310-28024390 ( 36) TGCGCACA 1 chr17:63534167-63534247 ( 60) TGCGCACA 1 chr17:259906-259986 ( 65) TGCGCACA 1 chr6:41040331-41040411 ( 50) TGCGCATT 1 chr6:30614750-30614830 ( 1) TGCGCAAG 1 chr22:28315374-28315454 ( 66) TGCGCAAG 1 chr19:48867249-48867329 ( 1) TGCGCAAA 1 chr5:169010581-169010661 ( 54) TGCACATG 1 chr20:34042599-34042679 ( 54) TGCACATG 1 chr16:27215154-27215234 ( 34) TGCGTATG 1 chr4:6675601-6675681 ( 71) TGCGCGTG 1 chr7:5085431-5085511 ( 6) TGCGCGTG 1 chr7:76178565-76178645 ( 17) TGCGCGTG 1 chr5:138678046-138678126 ( 61) TGCGCGTG 1 chr7:102004248-102004328 ( 14) TGCGCGTG 1 chr18:77748577-77748657 ( 60) TGCGTATA 1 chr19:9434820-9434900 ( 5) TGCGCGTG 1 chr13:20357162-20357242 ( 59) TGCGCGTG 1 chr19:50861778-50861858 ( 51) TGCGCAGT 1 chr14:102771500-10277158 ( 56) TGCGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCATG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.63023 E= 1.3e-010 -1232 -1232 -1232 255 -1232 -1232 160 -1232 -1232 158 -1232 -1232 -207 -1232 154 -1232 -1232 153 -1232 -212 239 -1232 -127 -1232 -149 -63 -49 152 83 -1232 97 -154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCATG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.3e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.039216 0.000000 0.960784 0.000000 0.000000 0.960784 0.000000 0.039216 0.862745 0.000000 0.137255 0.000000 0.058824 0.215686 0.235294 0.490196 0.294118 0.000000 0.647059 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCATG MEME-2 regular expression -------------------------------------------------------------------------------- TGCGCA[TGC][GA] -------------------------------------------------------------------------------- Time 8.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CGTGCGTG MEME-3 width = 8 sites = 27 llr = 240 E-value = 8.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGTGCGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 8:::a::2 probability G :a:a:a:7 matrix T 2:a:::a: bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * Relative 1.6 ***** Entropy 1.3 ****** (12.8 bits) 1.0 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGTGCGTG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:80606317-80606397 52 3.89e-05 gctggacgtg cgtgcgtg cgtgctggac chr20:61493505-61493585 3 3.89e-05 TC CGTGCGTG CACGTGCGCC chr4:6675601-6675681 59 3.89e-05 ggggggtacg cgtgcgtg caagtgcgcg chr14:96968632-96968712 62 3.89e-05 GCACGCACGG CGTGCGTG GTGGCGTCAG chr7:76178565-76178645 39 3.89e-05 CCTCTCCCTG CGTGCGTG TTCGCGCGTG chr7:72349865-72349945 17 3.89e-05 CCTCTCCCTG CGTGCGTG TTCGCGCGTG chr2:227700738-227700818 7 3.89e-05 CGGGAA CGTGCGTG ATGACGCACG chr19:44259072-44259152 60 3.89e-05 CCGGGCTGAG CGTGCGTG GATGGAGGCG chr7:102004248-102004328 36 3.89e-05 CCTCTCCCTG CGTGCGTG TTCGCGCGTG chr18:77748577-77748657 41 3.89e-05 GCGCTAGCGC CGTGCGTG CTGACGGCAT chr6:169852562-169852642 44 3.89e-05 AGAGAGGAGC CGTGCGTG GGGTCAGAGA chr7:50518030-50518110 64 3.89e-05 GCcgtacgtg cgtgcgtg agtgcgtga chr22:25843991-25844071 44 3.89e-05 CGCtgcgtgg cgtgcgtg gcgtgcgtgg chrX:148622441-148622521 36 3.89e-05 CTCCCGCGTA CGTGCGTG GTGTGCATAC chr7:5085431-5085511 28 5.89e-05 CCTCTCTCTG TGTGCGTG TTCGCGCATG chr3:127293886-127293966 20 5.89e-05 CATGTATGTA TGTGCGTG CGCATGCGCA chr7:74508834-74508914 9 5.89e-05 AGCGGGGG TGTGCGTG ATGCCACGCT chr19:40023486-40023566 50 5.89e-05 GCGTAAACGC TGTGCGTG CCAGAGTGTG chr2:26256886-26256966 62 9.81e-05 TACGCCCTTG CGTGCGTC TCAGGCAGCG chr19:57874703-57874783 47 9.81e-05 tgcgtgcgtg cgtgcgtc cgtCCTCGTG chr3:80819710-80819790 73 9.81e-05 CTCCTCTTAA CGTGCGTC chr19:38085654-38085734 9 9.81e-05 ACAAGCTC CGTGCGTC AAGACATAAC chr5:52095846-52095926 43 9.81e-05 GGACGGGAGA CGTGCGTC GGGTCGCGGG chr19:45972470-45972550 21 1.17e-04 ACGGGGGACC CGTGCGTA ACGGCTGACG chr1:22379119-22379199 20 1.38e-04 GGCACCCAAC TGTGCGTC TCCTGCGCGC chr19:40030795-40030875 41 1.48e-04 GTAAATGCAG TGTGCGTA ACCGGGCGCG chr9:80850891-80850971 35 1.87e-04 GGAGGCGGGA CCTGCGTG CCGACGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:80606317-80606397 3.9e-05 51_[+3]_21 chr20:61493505-61493585 3.9e-05 2_[+3]_70 chr4:6675601-6675681 3.9e-05 58_[+3]_14 chr14:96968632-96968712 3.9e-05 61_[+3]_11 chr7:76178565-76178645 3.9e-05 38_[+3]_34 chr7:72349865-72349945 3.9e-05 16_[+3]_56 chr2:227700738-227700818 3.9e-05 6_[+3]_66 chr19:44259072-44259152 3.9e-05 59_[+3]_13 chr7:102004248-102004328 3.9e-05 35_[+3]_37 chr18:77748577-77748657 3.9e-05 40_[+3]_32 chr6:169852562-169852642 3.9e-05 43_[+3]_29 chr7:50518030-50518110 3.9e-05 63_[+3]_9 chr22:25843991-25844071 3.9e-05 43_[+3]_29 chrX:148622441-148622521 3.9e-05 35_[+3]_37 chr7:5085431-5085511 5.9e-05 27_[+3]_45 chr3:127293886-127293966 5.9e-05 19_[+3]_53 chr7:74508834-74508914 5.9e-05 8_[+3]_64 chr19:40023486-40023566 5.9e-05 49_[+3]_23 chr2:26256886-26256966 9.8e-05 61_[+3]_11 chr19:57874703-57874783 9.8e-05 46_[+3]_26 chr3:80819710-80819790 9.8e-05 72_[+3] chr19:38085654-38085734 9.8e-05 8_[+3]_64 chr5:52095846-52095926 9.8e-05 42_[+3]_30 chr19:45972470-45972550 0.00012 20_[+3]_52 chr1:22379119-22379199 0.00014 19_[+3]_53 chr19:40030795-40030875 0.00015 40_[+3]_32 chr9:80850891-80850971 0.00019 34_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGTGCGTG width=8 seqs=27 chr17:80606317-80606397 ( 52) CGTGCGTG 1 chr20:61493505-61493585 ( 3) CGTGCGTG 1 chr4:6675601-6675681 ( 59) CGTGCGTG 1 chr14:96968632-96968712 ( 62) CGTGCGTG 1 chr7:76178565-76178645 ( 39) CGTGCGTG 1 chr7:72349865-72349945 ( 17) CGTGCGTG 1 chr2:227700738-227700818 ( 7) CGTGCGTG 1 chr19:44259072-44259152 ( 60) CGTGCGTG 1 chr7:102004248-102004328 ( 36) CGTGCGTG 1 chr18:77748577-77748657 ( 41) CGTGCGTG 1 chr6:169852562-169852642 ( 44) CGTGCGTG 1 chr7:50518030-50518110 ( 64) CGTGCGTG 1 chr22:25843991-25844071 ( 44) CGTGCGTG 1 chrX:148622441-148622521 ( 36) CGTGCGTG 1 chr7:5085431-5085511 ( 28) TGTGCGTG 1 chr3:127293886-127293966 ( 20) TGTGCGTG 1 chr7:74508834-74508914 ( 9) TGTGCGTG 1 chr19:40023486-40023566 ( 50) TGTGCGTG 1 chr2:26256886-26256966 ( 62) CGTGCGTC 1 chr19:57874703-57874783 ( 47) CGTGCGTC 1 chr3:80819710-80819790 ( 73) CGTGCGTC 1 chr19:38085654-38085734 ( 9) CGTGCGTC 1 chr5:52095846-52095926 ( 43) CGTGCGTC 1 chr19:45972470-45972550 ( 21) CGTGCGTA 1 chr1:22379119-22379199 ( 20) TGTGCGTC 1 chr19:40030795-40030875 ( 41) TGTGCGTA 1 chr9:80850891-80850971 ( 35) CCTGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 8.7e-002 -1140 122 -1140 38 -1140 -317 154 -1140 -1140 -1140 -1140 255 -1140 -1140 160 -1140 -1140 158 -1140 -1140 -1140 -1140 160 -1140 -1140 -1140 -1140 255 -115 -58 109 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 8.7e-002 0.000000 0.777778 0.000000 0.222222 0.000000 0.037037 0.962963 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.074074 0.222222 0.703704 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGTG MEME-3 regular expression -------------------------------------------------------------------------------- [CT]GTGCGT[GC] -------------------------------------------------------------------------------- Time 11.65 secs. ******************************************************************************** ******************************************************************************** MOTIF AATAAAGT MEME-4 width = 8 sites = 2 llr = 27 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATAAAGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa:aaa:: pos.-specific C :::::::: probability G ::::::a: matrix T ::a::::a bits 2.6 ****** * 2.3 ****** * 2.1 ****** * 1.8 ****** * Relative 1.6 ******** Entropy 1.3 ******** (19.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AATAAAGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAAGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:52456094-52456174 18 1.18e-06 GGAAGCTGAC AATAAAGT TTATTTGAGC chr19:50169179-50169259 72 1.18e-06 AAGTTGAACT AATAAAGT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAAGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:52456094-52456174 1.2e-06 17_[+4]_55 chr19:50169179-50169259 1.2e-06 71_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAAGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATAAAGT width=8 seqs=2 chr14:52456094-52456174 ( 18) AATAAAGT 1 chr19:50169179-50169259 ( 72) AATAAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAAGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.9e+003 259 -765 -765 -765 259 -765 -765 -765 -765 -765 -765 254 259 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 -765 -765 159 -765 -765 -765 -765 254 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAAGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAAAGT MEME-4 regular expression -------------------------------------------------------------------------------- AATAAAGT -------------------------------------------------------------------------------- Time 14.85 secs. ******************************************************************************** ******************************************************************************** MOTIF TTWAAWAA MEME-5 width = 8 sites = 3 llr = 39 E-value = 7.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTWAAWAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::7aa7aa pos.-specific C :::::::: probability G :::::::: matrix T aa3::3:: bits 2.6 ** ** ** 2.3 ** ** ** 2.1 ** ** ** 1.8 ** ** ** Relative 1.6 ******** Entropy 1.3 ******** (18.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTAAAAAA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWAAWAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:7210671-7210751 46 5.90e-07 GTTGAAGAGA TTAAAAAA CCGGGTGCGC chr12:25099526-25099606 11 1.81e-06 caaaatgtct ttaaataa ttactcctgc chr17:34257739-34257819 65 1.81e-06 CCCGCGCTTT TTTAAAAA GAGGCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWAAWAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:7210671-7210751 5.9e-07 45_[+5]_27 chr12:25099526-25099606 1.8e-06 10_[+5]_62 chr17:34257739-34257819 1.8e-06 64_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWAAWAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTWAAWAA width=8 seqs=3 chr17:7210671-7210751 ( 46) TTAAAAAA 1 chr12:25099526-25099606 ( 11) TTAAATAA 1 chr17:34257739-34257819 ( 65) TTTAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWAAWAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 7.7e+002 -823 -823 -823 254 -823 -823 -823 254 201 -823 -823 96 260 -823 -823 -823 260 -823 -823 -823 201 -823 -823 96 260 -823 -823 -823 260 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWAAWAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 7.7e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWAAWAA MEME-5 regular expression -------------------------------------------------------------------------------- TT[AT]AA[AT]AA -------------------------------------------------------------------------------- Time 17.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:35580141-35580221 5.24e-02 24_[+2(6.66e-05)]_48 chr19:46406082-46406162 3.15e-04 64_[+1(3.78e-05)]_8 chrX:148622441-148622521 1.38e-02 35_[+3(3.89e-05)]_37 chr19:9420486-9420566 6.15e-03 21_[+1(3.78e-05)]_51 chr7:6487593-6487673 9.11e-03 8_[+2(1.94e-05)]_64 chr17:259906-259986 5.10e-03 17_[+1(3.78e-05)]_35_[+1(3.78e-05)]_\ 12 chr5:42909082-42909162 3.96e-05 28_[+2(1.94e-05)]_44 chr6:164461227-164461307 2.22e-03 9_[+2(1.94e-05)]_29_[+2(1.94e-05)]_\ 26 chr17:47754901-47754981 1.87e-03 21_[+2(1.94e-05)]_51 chrX:54835285-54835365 4.94e-04 9_[+2(1.94e-05)]_63 chr19:40023486-40023566 6.09e-05 14_[+2(1.94e-05)]_27_[+3(5.89e-05)]_\ 8_[+2(1.94e-05)]_7 chr10:27389422-27389502 4.46e-04 4_[+2(1.94e-05)]_68 chr19:35615520-35615600 1.42e-02 58_[+1(3.78e-05)]_14 chr17:7210671-7210751 5.97e-06 45_[+5(5.90e-07)]_27 chr5:218294-218374 9.83e-03 22_[+2(6.66e-05)]_41_[+2(6.66e-05)]_\ 1 chr2:3522767-3522847 4.10e-02 80 chr11:18417745-18417825 1.00e-03 19_[+2(1.94e-05)]_53 chr22:24199986-24200066 1.56e-02 80 chr19:6199692-6199772 8.32e-02 80 chrX:48456465-48456545 2.33e-02 80 chr19:42721905-42721985 1.45e-02 25_[+1(3.78e-05)]_47 chr3:120315001-120315081 1.77e-03 27_[+2(2.91e-05)]_45 chrX:149106778-149106858 2.08e-01 80 chr5:52095846-52095926 1.31e-04 42_[+3(9.81e-05)]_18_[+2(1.94e-05)]_\ 4 chr7:44621916-44621996 9.97e-01 80 chr13:20357162-20357242 2.10e-04 46_[+2(2.91e-05)]_26 chr7:149444-149524 1.89e-02 80 chr9:124922018-124922098 2.37e-03 33_[+2(1.94e-05)]_39 chr19:9434820-9434900 6.34e-05 35_[+2(2.91e-05)]_37 chr19:48867249-48867329 1.84e-03 62_[+1(3.78e-05)]_10 chr17:63534167-63534247 3.03e-03 38_[+2(1.94e-05)]_34 chr5:130500981-130501061 8.50e-03 9_[+2(6.66e-05)]_63 chr4:54243760-54243840 2.33e-03 46_[+2(1.94e-05)]_26 chrX:15692938-15693018 7.94e-04 50_[+2(1.94e-05)]_22 chr2:190526068-190526148 7.22e-04 27_[+2(1.94e-05)]_45 chr2:33824367-33824447 1.41e-04 44_[+2(1.94e-05)]_28 chr14:23058113-23058193 1.84e-03 23_[+2(1.94e-05)]_49 chr19:3762945-3763025 6.48e-03 [+2(6.66e-05)]_72 chr14:75518174-75518254 3.80e-03 40_[+2(1.94e-05)]_32 chr9:139685764-139685844 9.67e-03 26_[+2(6.66e-05)]_46 chr16:27215154-27215234 1.14e-05 62_[+2(1.94e-05)]_10 chr20:34042599-34042679 4.71e-03 23_[+2(6.66e-05)]_49 chr17:36452902-36452982 1.04e-02 80 chr6:122793021-122793101 2.07e-05 43_[+2(1.94e-05)]_29 chrX:133507263-133507343 9.83e-03 55_[+3(5.89e-05)]_17 chr10:124639101-12463918 2.07e-03 6_[+2(1.94e-05)]_30_[+2(1.94e-05)]_\ 28 chr9:80850891-80850971 2.54e-01 80 chr10:1851472-1851552 4.43e-04 41_[+2(1.94e-05)]_31 chr22:28315374-28315454 2.98e-02 80 chr14:102771500-10277158 1.23e-03 21_[+2(1.94e-05)]_51 chr2:27357472-27357552 3.81e-03 31_[+2(1.94e-05)]_41 chr16:71598815-71598895 6.11e-03 36_[+1(3.78e-05)]_36 chr17:47439864-47439944 1.40e-04 29_[+2(1.94e-05)]_43 chr3:135915236-135915316 1.59e-03 50_[+1(3.78e-05)]_22 chr1:100731670-100731750 1.22e-02 44_[+1(3.78e-05)]_28 chr12:13080554-13080634 1.17e-02 24_[+2(1.94e-05)]_31_[+2(1.94e-05)]_\ 9 chr22:25843991-25844071 6.28e-05 8_[+2(1.94e-05)]_27_[+3(3.89e-05)]_\ 1_[+3(3.89e-05)]_1_[+3(3.89e-05)]_11 chr13:28024310-28024390 1.09e-04 25_[+3(3.89e-05)]_47 chr13:49106839-49106919 9.42e-04 48_[+2(1.94e-05)]_24 chr2:216979572-216979652 1.02e-03 11_[+2(1.94e-05)]_16_[+1(3.78e-05)]_\ 28_[+2(1.94e-05)]_1 chr5:132073333-132073413 5.96e-03 80 chr12:31226750-31226830 6.96e-04 22_[+2(1.94e-05)]_50 chr12:27090906-27090986 1.25e-02 80 chr7:50518030-50518110 1.50e-03 59_[+3(3.89e-05)]_13 chr5:133561966-133562046 3.32e-02 80 chr6:169852562-169852642 5.60e-02 43_[+3(3.89e-05)]_15_[+3(3.89e-05)]_\ 6 chr7:6388641-6388721 2.92e-02 47_[+1(3.78e-05)]_25 chr2:113012701-113012781 2.18e-02 67_[+2(6.66e-05)]_5 chr19:5720593-5720673 2.82e-03 59_[+2(1.94e-05)]_13 chr7:149570999-149571079 3.20e-03 60_[+2(1.94e-05)]_12 chr19:38085654-38085734 1.13e-02 8_[+3(9.81e-05)]_64 chr19:11616711-11616791 1.01e-03 26_[+2(1.94e-05)]_46 chr20:37101342-37101422 2.39e-03 [+2(6.66e-05)]_72 chr16:188714-188794 3.89e-02 37_[+2(6.66e-05)]_35 chr21:35747666-35747746 1.53e-02 80 chr3:80819710-80819790 1.06e-01 72_[+3(9.81e-05)] chr4:26862211-26862291 5.22e-02 80 chr17:27278691-27278771 2.00e-02 80 chr19:38210654-38210734 3.52e-03 21_[+2(1.94e-05)]_51 chr7:6746566-6746646 6.78e-03 24_[+1(3.78e-05)]_28_[+2(6.66e-05)]_\ 12 chr5:112043121-112043201 2.33e-03 13_[+2(2.91e-05)]_45_[+1(3.78e-05)]_\ 6 chr10:15001268-15001348 3.68e-04 29_[+2(2.91e-05)]_43 chr5:162887111-162887191 3.43e-03 43_[+2(1.94e-05)]_29 chr17:8103563-8103643 2.72e-03 27_[+2(1.94e-05)]_28_[+2(1.94e-05)]_\ 9 chr3:195717202-195717282 6.73e-02 80 chr9:71394905-71394985 5.21e-03 46_[+1(3.78e-05)]_26 chr8:117887092-117887172 5.67e-02 80 chr12:9600790-9600870 2.07e-03 28_[+2(1.94e-05)]_44 chr17:21831460-21831540 2.25e-02 46_[+2(1.94e-05)]_26 chr10:99185871-99185951 4.25e-03 19_[+1(3.78e-05)]_53 chr12:44152587-44152667 6.41e-02 80 chr2:99758104-99758184 1.23e-03 48_[+1(3.78e-05)]_24 chr1:176176679-176176759 2.05e-02 4_[+2(6.66e-05)]_68 chr19:40324885-40324965 2.85e-02 24_[+1(3.78e-05)]_48 chr2:37311610-37311690 8.84e-02 47_[+1(3.78e-05)]_25 chr19:57874703-57874783 2.58e-03 30_[+3(3.89e-05)]_[+3(3.89e-05)]_\ [+3(9.81e-05)]_26 chr20:25834639-25834719 1.87e-03 53_[+2(1.94e-05)]_19 chr14:64854930-64855010 2.90e-04 42_[+2(1.94e-05)]_30 chr3:197354789-197354869 9.31e-02 80 chr19:40030795-40030875 1.19e-04 7_[+3(3.89e-05)]_65 chr7:11013404-11013484 1.84e-03 37_[+2(1.94e-05)]_35 chr17:45570014-45570094 1.44e-03 11_[+2(6.66e-05)]_61 chr18:19320713-19320793 1.22e-02 24_[+1(3.78e-05)]_48 chr18:77748577-77748657 3.14e-03 6_[+3(3.89e-05)]_26_[+3(3.89e-05)]_\ 32 chr7:74508834-74508914 5.00e-02 8_[+3(5.89e-05)]_64 chr21:48055439-48055519 1.33e-01 80 chr19:56915368-56915448 1.54e-02 80 chr13:50656282-50656362 4.84e-02 80 chr2:37423608-37423688 1.84e-03 21_[+2(1.94e-05)]_51 chr3:119396312-119396392 5.83e-03 48_[+1(3.78e-05)]_24 chr22:38349617-38349697 1.15e-02 14_[+1(3.78e-05)]_58 chr1:151170961-151171041 1.03e-02 49_[+1(3.78e-05)]_23 chr3:195384798-195384878 7.29e-03 11_[+2(6.66e-05)]_44_[+2(6.66e-05)]_\ 9 chr12:9436213-9436293 6.96e-04 26_[+2(1.94e-05)]_46 chr4:1408946-1409026 4.07e-01 80 chr3:127293886-127293966 3.30e-05 25_[+2(1.94e-05)]_47 chr21:46293722-46293802 2.65e-02 80 chr19:50169179-50169259 2.43e-06 46_[+2(6.66e-05)]_17_[+4(1.18e-06)]_\ 1 chr20:30539803-30539883 9.32e-05 67_[+5(2.49e-05)]_5 chr13:21872164-21872244 8.29e-01 80 chr11:61582751-61582831 2.25e-03 9_[+2(1.94e-05)]_63 chr11:76092323-76092403 1.83e-03 38_[+2(1.94e-05)]_34 chr19:984680-984760 1.38e-03 17_[+2(1.94e-05)]_55 chr16:14164898-14164978 3.35e-03 21_[+2(1.94e-05)]_51 chr12:69753447-69753527 3.69e-03 27_[+2(2.91e-05)]_45 chr17:21030153-21030233 3.65e-02 41_[+1(3.78e-05)]_31 chr18:71815065-71815145 1.69e-04 45_[+2(1.94e-05)]_27 chr17:27169802-27169882 9.54e-02 80 chr11:65101247-65101327 1.01e-02 80 chr12:121063713-12106379 4.04e-05 33_[+2(1.94e-05)]_39 chr8:67560685-67560765 9.77e-01 80 chr17:34257739-34257819 1.19e-05 64_[+5(1.81e-06)]_8 chr21:40759666-40759746 3.04e-03 21_[+1(3.78e-05)]_51 chr11:63448880-63448960 1.64e-03 38_[+2(1.94e-05)]_34 chr18:47808102-47808182 8.80e-02 30_[+1(3.78e-05)]_42 chr7:102004248-102004328 1.22e-03 35_[+3(3.89e-05)]_6_[+3(3.89e-05)]_\ 23 chr17:37213249-37213329 1.10e-02 13_[+2(6.66e-05)]_59 chr19:5622947-5623027 4.23e-03 14_[+1(3.78e-05)]_58 chr5:175395246-175395326 5.82e-03 41_[+1(3.78e-05)]_22_[+2(6.66e-05)]_\ 1 chr14:35451726-35451806 2.72e-03 45_[+2(1.94e-05)]_27 chr18:10525833-10525913 3.61e-02 80 chr19:44259072-44259152 3.48e-05 5_[+2(1.94e-05)]_46_[+3(3.89e-05)]_\ 13 chr12:120554652-12055473 4.44e-02 9_[+2(6.66e-05)]_63 chr20:35402188-35402268 2.11e-02 26_[+1(3.78e-05)]_46 chr15:78832719-78832799 2.22e-03 48_[+2(1.94e-05)]_24 chr5:43007796-43007876 2.16e-03 50_[+1(3.78e-05)]_22 chr7:25896677-25896757 9.47e-03 48_[+1(3.78e-05)]_24 chr6:121655680-121655760 3.77e-02 80 chr3:48594462-48594542 8.82e-03 7_[+2(1.94e-05)]_65 chr7:99869855-99869935 1.36e-03 20_[+2(1.94e-05)]_52 chr1:142890984-142891064 3.40e-02 80 chr1:35734190-35734270 4.70e-01 80 chr3:52232068-52232148 3.19e-03 52_[+1(3.78e-05)]_20 chr20:3185040-3185120 3.99e-03 24_[+1(3.78e-05)]_48 chr15:101626631-10162671 1.46e-01 80 chr1:231473628-231473708 3.07e-03 80 chr2:227700738-227700818 3.81e-03 6_[+3(3.89e-05)]_66 chr12:54673917-54673997 2.02e-03 50_[+1(3.78e-05)]_22 chr4:148605355-148605435 5.43e-01 80 chr9:131580593-131580673 4.74e-03 24_[+2(6.66e-05)]_48 chr16:15068521-15068601 1.41e-03 20_[+2(1.94e-05)]_52 chr20:42939849-42939929 4.38e-03 31_[+1(3.78e-05)]_41 chr1:39339032-39339112 1.25e-02 80 chr1:170043850-170043930 6.85e-03 3_[+1(3.78e-05)]_20_[+2(6.66e-05)]_\ 41 chr19:36606058-36606138 2.57e-03 48_[+2(1.94e-05)]_24 chr21:43430148-43430228 4.16e-01 80 chr17:36714575-36714655 2.18e-01 80 chr6:52535834-52535914 2.50e-02 26_[+1(3.78e-05)]_46 chr5:138678046-138678126 1.16e-02 80 chrX:30265126-30265206 4.55e-01 80 chr12:120875653-12087573 7.16e-03 43_[+1(3.78e-05)]_29 chrX:73512281-73512361 1.89e-01 80 chr2:99953737-99953817 5.01e-01 80 chr20:25176222-25176302 2.33e-03 68_[+2(1.94e-05)]_4 chr3:184081110-184081190 8.02e-04 26_[+2(1.94e-05)]_46 chr2:48667770-48667850 6.77e-01 80 chr19:45972470-45972550 2.09e-01 80 chr7:72349865-72349945 5.88e-03 16_[+3(3.89e-05)]_6_[+3(3.89e-05)]_\ 42 chr7:56131890-56131970 1.40e-03 20_[+2(1.94e-05)]_36_[+1(3.78e-05)]_\ 8 chr12:57623420-57623500 1.19e-02 [+1(3.78e-05)]_44_[+1(3.78e-05)]_20 chr19:7968501-7968581 7.02e-03 58_[+1(3.78e-05)]_14 chr2:91847951-91848031 9.21e-02 80 chr19:46088119-46088199 5.99e-01 80 chr7:76178565-76178645 1.93e-03 38_[+3(3.89e-05)]_6_[+3(3.89e-05)]_\ 20 chr7:5085431-5085511 6.49e-04 27_[+3(5.89e-05)]_4_[+1(3.78e-05)]_\ 33 chr16:4234021-4234101 1.79e-03 26_[+2(1.94e-05)]_46 chr14:96968632-96968712 8.83e-04 42_[+2(6.66e-05)]_11_[+3(3.89e-05)]_\ 11 chr17:47755457-47755537 8.53e-01 80 chr7:66057329-66057409 4.83e-01 80 chr16:70100143-70100223 2.22e-03 47_[+2(1.94e-05)]_25 chr6:24403100-24403180 6.86e-03 80 chr21:34697215-34697295 6.25e-03 80 chrX:347978-348058 6.42e-02 80 chr22:46692620-46692700 1.15e-03 36_[+2(1.94e-05)]_36 chr17:73401855-73401935 3.24e-02 50_[+1(3.78e-05)]_22 chr19:37178454-37178534 2.07e-03 48_[+2(1.94e-05)]_24 chr12:106751783-10675186 1.68e-03 46_[+2(1.94e-05)]_11_[+2(1.94e-05)]_\ 7 chr9:140118061-140118141 4.32e-04 22_[+2(1.94e-05)]_50 chr1:91966385-91966465 3.20e-02 24_[+2(6.66e-05)]_48 chr6:30614750-30614830 7.03e-02 80 chr15:90319852-90319932 3.86e-04 10_[+2(1.94e-05)]_62 chr19:11670154-11670234 3.74e-04 80 chr11:43333462-43333542 1.93e-01 80 chr2:70475871-70475951 2.17e-03 47_[+2(6.66e-05)]_25 chr19:6678092-6678172 8.07e-02 80 chr6:88118149-88118229 1.39e-02 19_[+1(3.78e-05)]_53 chr19:50861778-50861858 1.60e-03 8_[+2(1.94e-05)]_64 chr3:75834706-75834786 5.55e-04 47_[+1(3.78e-05)]_25 chr12:25099526-25099606 8.30e-08 10_[+5(1.81e-06)]_7_[+2(1.94e-05)]_\ 47 chr3:150320999-150321079 3.12e-02 80 chr17:7518565-7518645 6.84e-02 80 chr14:24036742-24036822 5.30e-02 80 chr7:39989159-39989239 3.70e-01 80 chr19:36705605-36705685 8.69e-01 80 chr16:27561216-27561296 9.35e-03 22_[+1(3.78e-05)]_50 chr19:56135960-56136040 1.84e-02 43_[+2(6.66e-05)]_29 chr10:16859620-16859700 9.60e-03 80 chr4:6675601-6675681 6.32e-05 34_[+2(1.94e-05)]_16_[+3(3.89e-05)]_\ 14 chr18:77439685-77439765 6.57e-01 80 chr1:3773791-3773871 8.10e-03 80 chr2:26256886-26256966 1.94e-03 61_[+3(9.81e-05)]_11 chr5:77590518-77590598 1.11e-03 47_[+2(1.94e-05)]_25 chr4:144434530-144434610 1.59e-04 38_[+2(1.94e-05)]_34 chr11:8932702-8932782 2.14e-03 42_[+1(3.78e-05)]_30 chr17:57970309-57970389 7.57e-02 35_[+2(1.94e-05)]_37 chr22:42017245-42017325 5.85e-03 50_[+1(3.78e-05)]_22 chr20:25604599-25604679 2.33e-03 28_[+2(1.94e-05)]_44 chr6:153304743-153304823 9.45e-03 23_[+2(6.66e-05)]_49 chr10:124713864-12471394 3.70e-03 80 chr20:46089345-46089425 9.31e-01 80 chr17:58603573-58603653 5.36e-02 80 chr1:167189771-167189851 5.53e-03 15_[+1(3.78e-05)]_32_[+1(3.78e-05)]_\ 17 chr1:161129178-161129258 4.88e-01 80 chr7:157129599-157129679 2.47e-03 30_[+2(1.94e-05)]_42 chr19:16222133-16222213 5.03e-02 80 chr2:73053167-73053247 9.52e-02 80 chr3:46600022-46600102 1.50e-03 32_[+1(3.78e-05)]_40 chr7:100861362-100861442 3.87e-02 80 chr14:52456094-52456174 7.41e-04 17_[+4(1.18e-06)]_55 chr6:99872758-99872838 3.85e-02 80 chr1:154947360-154947440 1.95e-03 14_[+1(3.78e-05)]_47_[+1(3.78e-05)]_\ 3 chr5:169010581-169010661 1.88e-02 80 chr6:41040331-41040411 3.45e-04 4_[+1(3.78e-05)]_68 chr20:61493505-61493585 1.18e-04 2_[+3(3.89e-05)]_70 chr17:80606317-80606397 1.10e-02 13_[+3(3.89e-05)]_9_[+3(5.89e-05)]_\ 9_[+3(3.89e-05)]_[+3(3.89e-05)]_17 chr17:3571978-3572058 3.17e-03 80 chr17:17739535-17739615 3.91e-03 46_[+2(1.94e-05)]_26 chr19:44100392-44100472 4.05e-04 64_[+1(3.78e-05)]_8 chr8:94753275-94753355 5.56e-02 80 chr1:22379119-22379199 6.17e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************