******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB11.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:20088465-20088545 1.0000 80 chr8:132902945-132903025 1.0000 80 chr2:29978255-29978335 1.0000 80 chr1:208067696-208067776 1.0000 80 chr9:131644837-131644917 1.0000 80 chr19:3151123-3151203 1.0000 80 chr8:126575900-126575980 1.0000 80 chr4:38607708-38607788 1.0000 80 chr3:193923573-193923653 1.0000 80 chr5:173719493-173719573 1.0000 80 chr17:2878814-2878894 1.0000 80 chr11:46025386-46025466 1.0000 80 chr8:125796890-125796970 1.0000 80 chr5:42756856-42756936 1.0000 80 chr17:3466540-3466620 1.0000 80 chr1:244427634-244427714 1.0000 80 chr14:89017839-89017919 1.0000 80 chr22:38412578-38412658 1.0000 80 chr18:73967189-73967269 1.0000 80 chr11:74699630-74699710 1.0000 80 chr10:105440775-10544085 1.0000 80 chr1:241987439-241987519 1.0000 80 chr1:177953448-177953528 1.0000 80 chr8:2129919-2129999 1.0000 80 chr12:108378897-10837897 1.0000 80 chr20:39949807-39949887 1.0000 80 chr16:19165316-19165396 1.0000 80 chr12:71988199-71988279 1.0000 80 chr6:84712126-84712206 1.0000 80 chr19:54291244-54291324 1.0000 80 chr6:6584230-6584310 1.0000 80 chr14:101129309-10112938 1.0000 80 chr4:135248646-135248726 1.0000 80 chr7:127761849-127761929 1.0000 80 chr3:139063304-139063384 1.0000 80 chr10:70845971-70846051 1.0000 80 chr1:16127157-16127237 1.0000 80 chr2:171786937-171787017 1.0000 80 chr2:130201024-130201104 1.0000 80 chr16:3162488-3162568 1.0000 80 chr19:37157734-37157814 1.0000 80 chr18:43355221-43355301 1.0000 80 chr8:28748903-28748983 1.0000 80 chr4:66107535-66107615 1.0000 80 chr14:37641222-37641302 1.0000 80 chr17:58156850-58156930 1.0000 80 chr1:39857905-39857985 1.0000 80 chr15:71184832-71184912 1.0000 80 chr14:105399775-10539985 1.0000 80 chr3:127279546-127279626 1.0000 80 chr2:172779815-172779895 1.0000 80 chr11:60425459-60425539 1.0000 80 chr7:6749621-6749701 1.0000 80 chr6:30119483-30119563 1.0000 80 chrX:25057303-25057383 1.0000 80 chr14:69291634-69291714 1.0000 80 chr5:134452650-134452730 1.0000 80 chr9:130218040-130218120 1.0000 80 chr6:52258774-52258854 1.0000 80 chr8:33579811-33579891 1.0000 80 chr7:102533278-102533358 1.0000 80 chr13:53191550-53191630 1.0000 80 chr19:39154977-39155057 1.0000 80 chr7:45189985-45190065 1.0000 80 chr1:94509814-94509894 1.0000 80 chr3:16276810-16276890 1.0000 80 chr10:80305686-80305766 1.0000 80 chr11:6947469-6947549 1.0000 80 chr14:90967274-90967354 1.0000 80 chr8:49959188-49959268 1.0000 80 chr10:135201820-13520190 1.0000 80 chr14:39583332-39583412 1.0000 80 chr14:100704318-10070439 1.0000 80 chr1:47693500-47693580 1.0000 80 chr19:8617757-8617837 1.0000 80 chr1:211780375-211780455 1.0000 80 chr22:47655906-47655986 1.0000 80 chr13:93031788-93031868 1.0000 80 chr14:45604927-45605007 1.0000 80 chr14:99492988-99493068 1.0000 80 chr19:49262484-49262564 1.0000 80 chr1:247372939-247373019 1.0000 80 chr12:3982217-3982297 1.0000 80 chr13:111521947-11152202 1.0000 80 chr5:132486748-132486828 1.0000 80 chr1:48217022-48217102 1.0000 80 chr18:21544365-21544445 1.0000 80 chr15:57179176-57179256 1.0000 80 chr21:37546294-37546374 1.0000 80 chr9:116413109-116413189 1.0000 80 chr19:37958420-37958500 1.0000 80 chr19:56152299-56152379 1.0000 80 chr16:72048150-72048230 1.0000 80 chr16:70666313-70666393 1.0000 80 chr11:6846681-6846761 1.0000 80 chr5:140997805-140997885 1.0000 80 chr12:119941461-11994154 1.0000 80 chr2:190627898-190627978 1.0000 80 chr4:111186315-111186395 1.0000 80 chrX:19003080-19003160 1.0000 80 chr13:41837652-41837732 1.0000 80 chr17:26898714-26898794 1.0000 80 chr7:66460779-66460859 1.0000 80 chr6:147982016-147982096 1.0000 80 chr1:27938134-27938214 1.0000 80 chr11:46271189-46271269 1.0000 80 chr5:139555488-139555568 1.0000 80 chr1:207326296-207326376 1.0000 80 chr19:17420905-17420985 1.0000 80 chr14:96087171-96087251 1.0000 80 chr9:98274344-98274424 1.0000 80 chr16:70465068-70465148 1.0000 80 chr3:132378989-132379069 1.0000 80 chr20:55776564-55776644 1.0000 80 chr9:140111781-140111861 1.0000 80 chr9:35812277-35812357 1.0000 80 chr16:89085199-89085279 1.0000 80 chr8:143254373-143254453 1.0000 80 chr19:44555789-44555869 1.0000 80 chr21:36089573-36089653 1.0000 80 chrX:48366832-48366912 1.0000 80 chr13:42535249-42535329 1.0000 80 chr19:56092290-56092370 1.0000 80 chr19:37329222-37329302 1.0000 80 chr10:124713710-12471379 1.0000 80 chrX:3061467-3061547 1.0000 80 chr12:38710471-38710551 1.0000 80 chrX:3060765-3060845 1.0000 80 chr17:40169850-40169930 1.0000 80 chr2:232853002-232853082 1.0000 80 chr16:47753809-47753889 1.0000 80 chrX:119077747-119077827 1.0000 80 chr20:52104155-52104235 1.0000 80 chr17:42976400-42976480 1.0000 80 chr14:24702053-24702133 1.0000 80 chr19:55720410-55720490 1.0000 80 chr10:134778996-13477907 1.0000 80 chr1:167121860-167121940 1.0000 80 chr17:31198905-31198985 1.0000 80 chr14:103851529-10385160 1.0000 80 chr22:35470718-35470798 1.0000 80 chr10:104180881-10418096 1.0000 80 chr14:76804054-76804134 1.0000 80 chr14:23030743-23030823 1.0000 80 chr14:61201397-61201477 1.0000 80 chr6:161865692-161865772 1.0000 80 chr20:40322112-40322192 1.0000 80 chr3:65605206-65605286 1.0000 80 chr22:45705755-45705835 1.0000 80 chr13:42833866-42833946 1.0000 80 chr17:8060166-8060246 1.0000 80 chr1:19201788-19201868 1.0000 80 chr17:37844331-37844411 1.0000 80 chr19:56165646-56165726 1.0000 80 chr22:20194090-20194170 1.0000 80 chr10:120937981-12093806 1.0000 80 chr5:169011011-169011091 1.0000 80 chr10:89879974-89880054 1.0000 80 chr8:30584796-30584876 1.0000 80 chr22:19749401-19749481 1.0000 80 chr2:16499788-16499868 1.0000 80 chr22:35415144-35415224 1.0000 80 chr2:30979140-30979220 1.0000 80 chr11:132934479-13293455 1.0000 80 chr7:72299780-72299860 1.0000 80 chr12:45342565-45342645 1.0000 80 chr14:21342062-21342142 1.0000 80 chr6:99842049-99842129 1.0000 80 chr3:9199501-9199581 1.0000 80 chr8:67578829-67578909 1.0000 80 chr20:55685689-55685769 1.0000 80 chrX:53024640-53024720 1.0000 80 chr2:905945-906025 1.0000 80 chr19:48210618-48210698 1.0000 80 chr6:138249146-138249226 1.0000 80 chr7:32697690-32697770 1.0000 80 chr1:36866735-36866815 1.0000 80 chr10:98346279-98346359 1.0000 80 chr10:131076183-13107626 1.0000 80 chr1:203652004-203652084 1.0000 80 chr13:52768581-52768661 1.0000 80 chr11:2913886-2913966 1.0000 80 chrX:71792872-71792952 1.0000 80 chr12:51327551-51327631 1.0000 80 chr12:6602509-6602589 1.0000 80 chr13:20763482-20763562 1.0000 80 chr6:27247640-27247720 1.0000 80 chrX:131352181-131352261 1.0000 80 chr17:31966562-31966642 1.0000 80 chr9:35646572-35646652 1.0000 80 chr14:69658190-69658270 1.0000 80 chr5:148668149-148668229 1.0000 80 chr4:120221760-120221840 1.0000 80 chr1:19641978-19642058 1.0000 80 chr19:49362015-49362095 1.0000 80 chr4:103746977-103747057 1.0000 80 chr22:36877375-36877455 1.0000 80 chr13:100150830-10015091 1.0000 80 chr19:52643143-52643223 1.0000 80 chr19:48725009-48725089 1.0000 80 chr15:82554336-82554416 1.0000 80 chr10:104433924-10443400 1.0000 80 chr3:8594219-8594299 1.0000 80 chr11:125808411-12580849 1.0000 80 chr9:140118155-140118235 1.0000 80 chr19:46119188-46119268 1.0000 80 chr5:7995969-7996049 1.0000 80 chr9:129978725-129978805 1.0000 80 chr3:121638102-121638182 1.0000 80 chr6:32160710-32160790 1.0000 80 chrX:49092073-49092153 1.0000 80 chr11:64009518-64009598 1.0000 80 chr18:372773-372853 1.0000 80 chr6:27721919-27721999 1.0000 80 chr16:5566315-5566395 1.0000 80 chr4:1722971-1723051 1.0000 80 chr11:31391317-31391397 1.0000 80 chr6:33388962-33389042 1.0000 80 chr20:18547962-18548042 1.0000 80 chr11:1283865-1283945 1.0000 80 chr19:19499532-19499612 1.0000 80 chr8:88886366-88886446 1.0000 80 chrX:108780005-108780085 1.0000 80 chr13:41345332-41345412 1.0000 80 chr20:19997930-19998010 1.0000 80 chr19:49310030-49310110 1.0000 80 chr16:13774317-13774397 1.0000 80 chr2:208890262-208890342 1.0000 80 chr3:127872202-127872282 1.0000 80 chr7:7606343-7606423 1.0000 80 chr22:43539428-43539508 1.0000 80 chr1:68614275-68614355 1.0000 80 chr13:115000253-11500033 1.0000 80 chr11:236567-236647 1.0000 80 chr9:140022127-140022207 1.0000 80 chr5:39266664-39266744 1.0000 80 chr12:123459217-12345929 1.0000 80 chr19:51963892-51963972 1.0000 80 chr19:17354817-17354897 1.0000 80 chr8:41908401-41908481 1.0000 80 chr10:122610740-12261082 1.0000 80 chr11:46958170-46958250 1.0000 80 chr2:63815385-63815465 1.0000 80 chr22:31556060-31556140 1.0000 80 chr2:73968066-73968146 1.0000 80 chr3:88198988-88199068 1.0000 80 chrX:40595008-40595088 1.0000 80 chr3:101395926-101396006 1.0000 80 chr15:55488848-55488928 1.0000 80 chr16:2771119-2771199 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZBTB11/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZBTB11.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.226 C 0.273 G 0.283 T 0.218 Background letter frequencies (from file dataset with add-one prior applied): A 0.226 C 0.273 G 0.283 T 0.218 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VGGAASYD MEME-1 width = 8 sites = 137 llr = 910 E-value = 1.3e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGGAASYD MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4::aa113 pos.-specific C 3::::552 probability G 3aa::3:3 matrix T ::::::42 bits 2.2 ** 2.0 ** 1.8 **** 1.5 **** Relative 1.3 **** Entropy 1.1 **** (9.6 bits) 0.9 **** 0.7 **** * 0.4 ******* 0.2 ******* 0.0 -------- Multilevel AGGAACCG consensus C GTA sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGGAASYD MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:36877375-36877455 6 1.24e-05 CAAGG AGGAACTA AGAGTGTGAG chr19:54291244-54291324 12 1.24e-05 GGTCTTCTGC AGGAACTA AAGAGCCTGT chrX:108780005-108780085 13 2.80e-05 AGGGATCTTC AGGAACTG AAGGGAAGTG chr17:31966562-31966642 7 2.80e-05 TCAAAG AGGAACTG CCCCGAGGAG chr6:147982016-147982096 25 2.80e-05 taatacaGGT AGGAACTG GGAAGTCAGG chr9:129978725-129978805 13 5.56e-05 tgttcttgat aggaacca aaaccctgga chr17:31198905-31198985 10 5.56e-05 AAGGAGAAA AGGAACCA ATGAGCTCCA chr1:207326296-207326376 24 5.56e-05 TAGCTCGCAC AGGAACTT AAACACAGAC chr16:70666313-70666393 21 5.56e-05 TTTAGCCTAT AGGAACCA AAGGAATGGA chr5:134452650-134452730 7 5.56e-05 AGATAA AGGAACCA CATAAGCCTT chr14:101129309-10112938 7 5.56e-05 TCAGGT AGGAACCA GAACCCCAGT chr12:108378897-10837897 26 5.56e-05 TGACTGCATC AGGAACTT TAAAATTCAC chr10:105440775-10544085 13 5.56e-05 CGCTGAAGTG AGGAACCA GTGACTTTCT chr2:73968066-73968146 58 1.05e-04 tttcccctaa aggaacct ggaaattctg chr1:203652004-203652084 12 1.05e-04 GGTCTAAGCT AGGAACCT ACCTACCCTG chr8:49959188-49959268 9 1.05e-04 GGCCAGGC AGGAACCT TTCATCAGAT chr2:29978255-29978335 11 1.05e-04 TGCTTTAAGA AGGAACCT TGCGGTTTTA chr5:7995969-7996049 10 1.37e-04 Atgttagag cggaactg ttctttcctg chr3:9199501-9199581 45 1.37e-04 GATGTGACAC AGGAAGTA ATCCTACAGG chrX:19003080-19003160 20 1.37e-04 CGCCGCCTAG CGGAACTG GAGTAGCGGG chr1:94509814-94509894 49 1.37e-04 GGTCCCAGAG AGGAAGTA CTTCAGGGCT chr18:43355221-43355301 14 1.37e-04 CTGAAGAAGG CGGAACTG TTGGGTTGCC chr3:88198988-88199068 20 2.02e-04 GTCCCCAGCC CGGAACCA CAAGTGAGGG chr11:46958170-46958250 18 2.02e-04 CGACTGCCCC CGGAACTT GAGTGGCCAG chr5:39266664-39266744 44 2.02e-04 TGGACAGTTC AGGAAGTG GGGGAGGTGG chr9:140022127-140022207 12 2.02e-04 aaaaaaaaaa aggaagtg gcttcattcc chr13:115000253-11500033 22 2.02e-04 GGAGAGGCAT CGGAACCA ACAACTCGGG chr16:13774317-13774397 37 2.02e-04 AGTGTTACAC AGGAAGTG ACACAGTGGG chr18:372773-372853 59 2.02e-04 GCTGTGACAC AGGAAGTG TCATGATGAC chr4:103746977-103747057 50 2.02e-04 TACAAAATAC AGGAAGTG GCAACACTGT chr22:35415144-35415224 6 2.02e-04 CCGGA AGGAAGTG TCAAGGGTGT chr17:42976400-42976480 32 2.02e-04 CGGATAGAAG AGGAAGTG AGCGAGGGGA chrX:3060765-3060845 72 2.02e-04 GGGGAGAAAT AGGAAGTG T chrX:3061467-3061547 58 2.02e-04 GGGGAGGAAC AGGAAGTG TGTCCTGCAA chr9:140111781-140111861 19 2.02e-04 GCTGGGAAGG CGGAACCA AGCCGTCCGT chr5:139555488-139555568 31 2.02e-04 CCTGACGGGT GGGAACTA ATCTCCCGGT chr14:99492988-99493068 38 2.02e-04 CATGTTGCAC AGGAAGTG TCCCAGCACT chr14:45604927-45605007 7 2.02e-04 TGGAAA CGGAACTT AAATTTAGAG chr1:211780375-211780455 25 2.02e-04 ACCCAAGAAC AGGAAGTG CATCTAGAAA chr16:19165316-19165396 11 2.02e-04 ttccttttgt gggaacta tccatctctt chr1:244427634-244427714 21 2.02e-04 GGTGAAGGGA AGGAAGTG TGCTTGGGGA chr17:3466540-3466620 1 2.02e-04 . gggaacta ataatagctt chr16:2771119-2771199 60 2.73e-04 AGGCTCGGGG AGGAAGTT ATTTGGGGCA chr3:101395926-101396006 10 2.73e-04 GTAACCAGG GGGAACTG CACTTCTCCA chr11:64009518-64009598 23 2.73e-04 AGGGACAGGC GGGAACTG AAGAGCGGAG chr14:61201397-61201477 3 2.73e-04 GG GGGAACTG ACTGCCGGAA chr8:28748903-28748983 27 2.73e-04 TATTTTATTC CGGAACCG TGTTTTGGTT chr6:6584230-6584310 32 2.73e-04 AGTGTTACAC AGGAAGTT GCATGGTTTC chr22:31556060-31556140 26 3.61e-04 TGCCCGCAGG CGGAACCT TAGAGCTTCA chr10:122610740-12261082 15 3.61e-04 CTGAAGGCAA CGGAACCT GGGGGCGATG chrX:53024640-53024720 22 3.61e-04 GAAGGCCAAT GGGAACCA GAGATGCGAA chr14:21342062-21342142 43 3.61e-04 GTTTCCCTAA AGGAAGCG GTTTCCCGCC chr1:19201788-19201868 5 3.61e-04 TACT GGGAACCA CGTCCAGGAG chr14:76804054-76804134 14 3.61e-04 CAACTTTTCT AGGAACTC ATGAGATCCT chrX:119077747-119077827 4 3.61e-04 GAC AGGAAGCG ATGTGTGCAT chr10:124713710-12471379 16 3.61e-04 AGCCCAGCCC CGGAACCT CTCTTCCAGT chr13:41837652-41837732 11 3.61e-04 TTACTGAGGT CGGAACCT TCCGAGACCC chr19:56152299-56152379 31 3.61e-04 CTCCAGGCGG CGGAACCT CCGCACTGGG chr9:116413109-116413189 3 3.61e-04 GG CGGAACCT TTCTCCTCCA chr18:21544365-21544445 54 3.61e-04 GGTGTTGCAC AGGAAGCG TCAGGGAGGC chr7:45189985-45190065 22 3.61e-04 GTGGCTTTGT GGGAACCA AGCTGTTTGT chr3:193923573-193923653 17 3.61e-04 AATCAAATAA GGGAACCA CTTGAACTGA chr11:20088465-20088545 28 3.61e-04 GAGCCCCTGT GGGAACCA GAGGAGAGGG chr12:123459217-12345929 3 4.17e-04 AC CGGAAGTA ATGCGAGACG chr13:100150830-10015091 38 4.17e-04 AGGCCGGATC CGGAAGTA GGGGGACCAC chr11:6947469-6947549 72 4.17e-04 GAGGCAGCGC CGGAAGTA T chr15:55488848-55488928 52 4.74e-04 GAACAACGGG AGGAACCC GGGCCAAACA chr7:7606343-7606423 23 4.74e-04 GTCCCAGCCT AGGAACCC GGGGATCCGG chr14:69658190-69658270 6 4.74e-04 AGGAA CGGAAGTG GTTACGGCCC chr12:51327551-51327631 16 4.74e-04 caaccacagg gggaacct aagctaagtg chr10:131076183-13107626 57 4.74e-04 GGTGGTGGGG AGGAACCC GGTGCAGTGA chr14:103851529-10385160 9 4.74e-04 GGGACAGG AGGAACCC GCAGCCCGCG chr16:47753809-47753889 5 4.74e-04 aagg gggaacct aagtgcttgg chr2:190627898-190627978 58 4.74e-04 TACCAAAGAA CGGAAGTG TTTCTCATCG chr10:80305686-80305766 69 4.74e-04 CTGGGAGCTG GGGAACCT GATA chr13:53191550-53191630 44 4.74e-04 GCAAAGGGAG AGGAACCC GCCAGACCAG chr11:74699630-74699710 18 4.74e-04 CTCTGAGGCC GGGAACCT TTGCTCAACT chr18:73967189-73967269 14 4.74e-04 CGTACTTAGC CGGAAGTG TGTCTGTCCA chr13:20763482-20763562 30 5.35e-04 GTGGGAGATG GGGAAGTA GTGATCGTAG chr12:6602509-6602589 33 5.35e-04 GTCCGCCTGC CGGAAGTT TTGGAGCGCC chr8:30584796-30584876 26 5.35e-04 CGCATCCGTG CGGAAGCA GACGCTGGCT chr17:37844331-37844411 3 5.35e-04 AC CGGAAGTT CCTGTGTTCT chr7:127761849-127761929 30 5.35e-04 TAGCTCAGGG AGGAAATA GTGGAGAGCA chr20:18547962-18548042 34 6.11e-04 GGGGCAGAGC CGGAAGCG GACGCTGAAA chr4:1722971-1723051 28 6.11e-04 GCGTCAGTTG CGGAACTC GAAATTCATG chr14:23030743-23030823 5 6.11e-04 GGCC AGGAAATG TGTGGGCAGG chr20:52104155-52104235 31 6.11e-04 GTTTGTCTAA AGGAAATG TTTCTGTTCA chr19:56092290-56092370 62 6.11e-04 GCTGGGAAGC CGGAAGCG GGAGGACGGG chr19:44555789-44555869 34 6.11e-04 TGGGTGTTGC GGGAAGTG TAATCGAGGA chr20:55776564-55776644 28 6.11e-04 AGTTGTCCCT GGGAAGTG GAACTCAGCA chr12:3982217-3982297 45 6.11e-04 ACTCCGGTCC CGGAACTC AACACCCAGA chr8:2129919-2129999 14 6.11e-04 GGGACACGTG GGGAAGTG ATGGCACCGG chr19:51963892-51963972 30 7.17e-04 caagggaagg gggaagtt ggagcagcag chr3:127872202-127872282 16 7.17e-04 CTCAGGAGGG CGGAAGCT TCCGGGCCGG chr13:42833866-42833946 40 7.17e-04 GTGAGTACAC AGGAAGTC ACGTCCCCAA chr22:35470718-35470798 1 7.17e-04 . AGGAACAA GTTCTAGGAC chr1:167121860-167121940 70 7.17e-04 GTTACAACAC AGGAAGTC AAT chr12:38710471-38710551 42 7.17e-04 CCGTCACTCC AGGAAACA GCGACCCGCT chrX:48366832-48366912 27 7.17e-04 TCGTCCCCAG GGGAAGCA CAGGCGCCTA chr13:111521947-11152202 43 7.17e-04 CCGAATAAAA AGGAAACA TGCCTCGTAA chr12:71988199-71988279 40 7.17e-04 ctcctatgga aggaaaca tcagggagtg chr20:39949807-39949887 73 7.17e-04 GTAGTGACAC AGGAAACA chr11:125808411-12580849 69 8.16e-04 tcttcacccc aggaacag cagg chr5:169011011-169011091 8 8.16e-04 CCTTCCC CGGAACCC TGGGGTCTTA chr15:57179176-57179256 21 8.16e-04 CTTTCTCCTA CGGAACCC TTGGACCTCT chrX:25057303-25057383 14 8.16e-04 AAATGAGCCA CGGAACCC TAGTGAACAG chr14:105399775-10539985 55 8.16e-04 AGGCTGCCGG GGGAAGCG AGAGGCGCGG chr16:3162488-3162568 6 8.16e-04 ACACC CGGAACCC TCAAAACCGG chr1:16127157-16127237 73 8.16e-04 CAAGACACCA GGGAACTC chr3:139063304-139063384 15 8.16e-04 atttccctgt gggaactc atgtccatgg chr14:89017839-89017919 9 8.16e-04 GGAGGCCC CGGAACCC TCTTTCTGCA chr1:208067696-208067776 17 8.16e-04 ataggaacat aggaacag aaagttgcca chr19:37958420-37958500 38 8.92e-04 AGGTCCGTGA AGGAAGCC CGGCTCAGTG chr5:173719493-173719573 13 8.92e-04 AGAATGaaga aggaacat ttattcccca chr8:132902945-132903025 15 8.92e-04 TTGTTAAAAC Aggaacat ttctgctctt chr10:98346279-98346359 35 9.31e-04 CGGGAGCGCA CGGAAATG CCTCCTCCAC chr6:30119483-30119563 55 9.31e-04 TTCCTGGGGA GGGAACCC AGAGTCCCAC chr14:37641222-37641302 22 9.31e-04 GGACAATGCC GGGAACCC GAGAGCGGCC chr11:31391317-31391397 51 1.07e-03 GCGAACACGT CGGAACAG TGACTTCCGG chr2:30979140-30979220 4 1.07e-03 GCC CGGAACAG ACTATCAATG chr19:37157734-37157814 29 1.07e-03 AGTGTCCTCT GGGAAATG CAGTCCGAGG chr19:52643143-52643223 51 1.22e-03 CCGGGAGTGA CGGAAACT GCTAGCGGAG chr4:120221760-120221840 5 1.22e-03 GCAC CGGAAACT GAGCGGAGTC chr19:48210618-48210698 1 1.22e-03 . gggaacaa agggcacctc chr2:16499788-16499868 51 1.22e-03 CAGTTTGTGC AGGAAGAG ATAGGGAGGA chr22:19749401-19749481 52 1.22e-03 AAGAGACAAG GGGAACAA GTTTTGCAGA chr10:89879974-89880054 49 1.22e-03 aggaaggagg gggaacaa gaaggagagg chr14:24702053-24702133 17 1.22e-03 ACCTCTATTC CGGAAACT AGTTATGAAC chr13:42535249-42535329 20 1.22e-03 CCGAGTCCGC CGGAAACT CCTTCCCCCG chr1:47693500-47693580 24 1.22e-03 ACCAACCCCT GGGAAACA TACAAGCTTC chr14:100704318-10070439 28 1.22e-03 AAGATCTACG GGGAAACA GGCACCCAAC chr19:49362015-49362095 64 1.27e-03 GAGGCCTGAT GGGAAACG TAGTCCCCT chr8:126575900-126575980 48 1.36e-03 ACAGGAGGCC AGGAAACC AAGGTTCCCA chr14:90967274-90967354 60 1.41e-03 AGGTTCCGGC CGGAAGAG GGAGAACAAC chr22:43539428-43539508 40 1.46e-03 CACCGGGAGC GGGAAGAA AGGTTCCGCA chr6:27247640-27247720 43 1.46e-03 TTGACCCTCC AGGAAAAA TGTTCCTGAG chr1:247372939-247373019 65 1.59e-03 TCTGTGCCTG GGGAAGAT AAAAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGGAASYD MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:36877375-36877455 1.2e-05 5_[+1]_67 chr19:54291244-54291324 1.2e-05 11_[+1]_61 chrX:108780005-108780085 2.8e-05 12_[+1]_60 chr17:31966562-31966642 2.8e-05 6_[+1]_66 chr6:147982016-147982096 2.8e-05 24_[+1]_48 chr9:129978725-129978805 5.6e-05 12_[+1]_60 chr17:31198905-31198985 5.6e-05 9_[+1]_63 chr1:207326296-207326376 5.6e-05 23_[+1]_49 chr16:70666313-70666393 5.6e-05 20_[+1]_52 chr5:134452650-134452730 5.6e-05 6_[+1]_66 chr14:101129309-10112938 5.6e-05 6_[+1]_66 chr12:108378897-10837897 5.6e-05 25_[+1]_47 chr10:105440775-10544085 5.6e-05 12_[+1]_60 chr2:73968066-73968146 0.00011 57_[+1]_15 chr1:203652004-203652084 0.00011 11_[+1]_61 chr8:49959188-49959268 0.00011 8_[+1]_64 chr2:29978255-29978335 0.00011 10_[+1]_62 chr5:7995969-7996049 0.00014 9_[+1]_63 chr3:9199501-9199581 0.00014 44_[+1]_28 chrX:19003080-19003160 0.00014 19_[+1]_53 chr1:94509814-94509894 0.00014 48_[+1]_24 chr18:43355221-43355301 0.00014 13_[+1]_59 chr3:88198988-88199068 0.0002 19_[+1]_53 chr11:46958170-46958250 0.0002 17_[+1]_55 chr5:39266664-39266744 0.0002 43_[+1]_29 chr9:140022127-140022207 0.0002 11_[+1]_61 chr13:115000253-11500033 0.0002 21_[+1]_51 chr16:13774317-13774397 0.0002 36_[+1]_36 chr18:372773-372853 0.0002 58_[+1]_14 chr4:103746977-103747057 0.0002 49_[+1]_23 chr22:35415144-35415224 0.0002 5_[+1]_67 chr17:42976400-42976480 0.0002 31_[+1]_41 chrX:3060765-3060845 0.0002 71_[+1]_1 chrX:3061467-3061547 0.0002 57_[+1]_15 chr9:140111781-140111861 0.0002 18_[+1]_54 chr5:139555488-139555568 0.0002 30_[+1]_42 chr14:99492988-99493068 0.0002 37_[+1]_35 chr14:45604927-45605007 0.0002 6_[+1]_66 chr1:211780375-211780455 0.0002 24_[+1]_48 chr16:19165316-19165396 0.0002 10_[+1]_62 chr1:244427634-244427714 0.0002 20_[+1]_52 chr17:3466540-3466620 0.0002 [+1]_72 chr16:2771119-2771199 0.00027 59_[+1]_13 chr3:101395926-101396006 0.00027 9_[+1]_63 chr11:64009518-64009598 0.00027 22_[+1]_50 chr14:61201397-61201477 0.00027 2_[+1]_70 chr8:28748903-28748983 0.00027 26_[+1]_46 chr6:6584230-6584310 0.00027 31_[+1]_41 chr22:31556060-31556140 0.00036 25_[+1]_47 chr10:122610740-12261082 0.00036 14_[+1]_58 chrX:53024640-53024720 0.00036 21_[+1]_51 chr14:21342062-21342142 0.00036 42_[+1]_30 chr1:19201788-19201868 0.00036 4_[+1]_68 chr14:76804054-76804134 0.00036 13_[+1]_59 chrX:119077747-119077827 0.00036 3_[+1]_69 chr10:124713710-12471379 0.00036 15_[+1]_57 chr13:41837652-41837732 0.00036 10_[+1]_62 chr19:56152299-56152379 0.00036 30_[+1]_42 chr9:116413109-116413189 0.00036 2_[+1]_70 chr18:21544365-21544445 0.00036 53_[+1]_19 chr7:45189985-45190065 0.00036 21_[+1]_51 chr3:193923573-193923653 0.00036 16_[+1]_56 chr11:20088465-20088545 0.00036 27_[+1]_45 chr12:123459217-12345929 0.00042 2_[+1]_70 chr13:100150830-10015091 0.00042 37_[+1]_35 chr11:6947469-6947549 0.00042 71_[+1]_1 chr15:55488848-55488928 0.00047 51_[+1]_21 chr7:7606343-7606423 0.00047 22_[+1]_50 chr14:69658190-69658270 0.00047 5_[+1]_67 chr12:51327551-51327631 0.00047 15_[+1]_57 chr10:131076183-13107626 0.00047 56_[+1]_16 chr14:103851529-10385160 0.00047 8_[+1]_64 chr16:47753809-47753889 0.00047 4_[+1]_68 chr2:190627898-190627978 0.00047 57_[+1]_15 chr10:80305686-80305766 0.00047 68_[+1]_4 chr13:53191550-53191630 0.00047 43_[+1]_29 chr11:74699630-74699710 0.00047 17_[+1]_55 chr18:73967189-73967269 0.00047 13_[+1]_59 chr13:20763482-20763562 0.00053 29_[+1]_43 chr12:6602509-6602589 0.00053 32_[+1]_40 chr8:30584796-30584876 0.00053 25_[+1]_47 chr17:37844331-37844411 0.00053 2_[+1]_70 chr7:127761849-127761929 0.00053 29_[+1]_43 chr20:18547962-18548042 0.00061 33_[+1]_39 chr4:1722971-1723051 0.00061 27_[+1]_45 chr14:23030743-23030823 0.00061 4_[+1]_68 chr20:52104155-52104235 0.00061 30_[+1]_42 chr19:56092290-56092370 0.00061 61_[+1]_11 chr19:44555789-44555869 0.00061 33_[+1]_39 chr20:55776564-55776644 0.00061 27_[+1]_45 chr12:3982217-3982297 0.00061 44_[+1]_28 chr8:2129919-2129999 0.00061 13_[+1]_59 chr19:51963892-51963972 0.00072 29_[+1]_43 chr3:127872202-127872282 0.00072 15_[+1]_57 chr13:42833866-42833946 0.00072 39_[+1]_33 chr22:35470718-35470798 0.00072 [+1]_72 chr1:167121860-167121940 0.00072 69_[+1]_3 chr12:38710471-38710551 0.00072 41_[+1]_31 chrX:48366832-48366912 0.00072 26_[+1]_46 chr13:111521947-11152202 0.00072 42_[+1]_30 chr12:71988199-71988279 0.00072 39_[+1]_33 chr20:39949807-39949887 0.00072 72_[+1] chr11:125808411-12580849 0.00082 68_[+1]_4 chr5:169011011-169011091 0.00082 7_[+1]_65 chr15:57179176-57179256 0.00082 20_[+1]_52 chrX:25057303-25057383 0.00082 13_[+1]_59 chr14:105399775-10539985 0.00082 54_[+1]_18 chr16:3162488-3162568 0.00082 5_[+1]_67 chr1:16127157-16127237 0.00082 72_[+1] chr3:139063304-139063384 0.00082 14_[+1]_58 chr14:89017839-89017919 0.00082 8_[+1]_64 chr1:208067696-208067776 0.00082 16_[+1]_56 chr19:37958420-37958500 0.00089 37_[+1]_35 chr5:173719493-173719573 0.00089 12_[+1]_60 chr8:132902945-132903025 0.00089 14_[+1]_58 chr10:98346279-98346359 0.00093 34_[+1]_38 chr6:30119483-30119563 0.00093 54_[+1]_18 chr14:37641222-37641302 0.00093 21_[+1]_51 chr11:31391317-31391397 0.0011 50_[+1]_22 chr2:30979140-30979220 0.0011 3_[+1]_69 chr19:37157734-37157814 0.0011 28_[+1]_44 chr19:52643143-52643223 0.0012 50_[+1]_22 chr4:120221760-120221840 0.0012 4_[+1]_68 chr19:48210618-48210698 0.0012 [+1]_72 chr2:16499788-16499868 0.0012 50_[+1]_22 chr22:19749401-19749481 0.0012 51_[+1]_21 chr10:89879974-89880054 0.0012 48_[+1]_24 chr14:24702053-24702133 0.0012 16_[+1]_56 chr13:42535249-42535329 0.0012 19_[+1]_53 chr1:47693500-47693580 0.0012 23_[+1]_49 chr14:100704318-10070439 0.0012 27_[+1]_45 chr19:49362015-49362095 0.0013 63_[+1]_9 chr8:126575900-126575980 0.0014 47_[+1]_25 chr14:90967274-90967354 0.0014 59_[+1]_13 chr22:43539428-43539508 0.0015 39_[+1]_33 chr6:27247640-27247720 0.0015 42_[+1]_30 chr1:247372939-247373019 0.0016 64_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGGAASYD MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGGAASYD width=8 seqs=137 chr22:36877375-36877455 ( 6) AGGAACTA 1 chr19:54291244-54291324 ( 12) AGGAACTA 1 chrX:108780005-108780085 ( 13) AGGAACTG 1 chr17:31966562-31966642 ( 7) AGGAACTG 1 chr6:147982016-147982096 ( 25) AGGAACTG 1 chr9:129978725-129978805 ( 13) AGGAACCA 1 chr17:31198905-31198985 ( 10) AGGAACCA 1 chr1:207326296-207326376 ( 24) AGGAACTT 1 chr16:70666313-70666393 ( 21) AGGAACCA 1 chr5:134452650-134452730 ( 7) AGGAACCA 1 chr14:101129309-10112938 ( 7) AGGAACCA 1 chr12:108378897-10837897 ( 26) AGGAACTT 1 chr10:105440775-10544085 ( 13) AGGAACCA 1 chr2:73968066-73968146 ( 58) AGGAACCT 1 chr1:203652004-203652084 ( 12) AGGAACCT 1 chr8:49959188-49959268 ( 9) AGGAACCT 1 chr2:29978255-29978335 ( 11) AGGAACCT 1 chr5:7995969-7996049 ( 10) CGGAACTG 1 chr3:9199501-9199581 ( 45) AGGAAGTA 1 chrX:19003080-19003160 ( 20) CGGAACTG 1 chr1:94509814-94509894 ( 49) AGGAAGTA 1 chr18:43355221-43355301 ( 14) CGGAACTG 1 chr3:88198988-88199068 ( 20) CGGAACCA 1 chr11:46958170-46958250 ( 18) CGGAACTT 1 chr5:39266664-39266744 ( 44) AGGAAGTG 1 chr9:140022127-140022207 ( 12) AGGAAGTG 1 chr13:115000253-11500033 ( 22) CGGAACCA 1 chr16:13774317-13774397 ( 37) AGGAAGTG 1 chr18:372773-372853 ( 59) AGGAAGTG 1 chr4:103746977-103747057 ( 50) AGGAAGTG 1 chr22:35415144-35415224 ( 6) AGGAAGTG 1 chr17:42976400-42976480 ( 32) AGGAAGTG 1 chrX:3060765-3060845 ( 72) AGGAAGTG 1 chrX:3061467-3061547 ( 58) AGGAAGTG 1 chr9:140111781-140111861 ( 19) CGGAACCA 1 chr5:139555488-139555568 ( 31) GGGAACTA 1 chr14:99492988-99493068 ( 38) AGGAAGTG 1 chr14:45604927-45605007 ( 7) CGGAACTT 1 chr1:211780375-211780455 ( 25) AGGAAGTG 1 chr16:19165316-19165396 ( 11) GGGAACTA 1 chr1:244427634-244427714 ( 21) AGGAAGTG 1 chr17:3466540-3466620 ( 1) GGGAACTA 1 chr16:2771119-2771199 ( 60) AGGAAGTT 1 chr3:101395926-101396006 ( 10) GGGAACTG 1 chr11:64009518-64009598 ( 23) GGGAACTG 1 chr14:61201397-61201477 ( 3) GGGAACTG 1 chr8:28748903-28748983 ( 27) CGGAACCG 1 chr6:6584230-6584310 ( 32) AGGAAGTT 1 chr22:31556060-31556140 ( 26) CGGAACCT 1 chr10:122610740-12261082 ( 15) CGGAACCT 1 chrX:53024640-53024720 ( 22) GGGAACCA 1 chr14:21342062-21342142 ( 43) AGGAAGCG 1 chr1:19201788-19201868 ( 5) GGGAACCA 1 chr14:76804054-76804134 ( 14) AGGAACTC 1 chrX:119077747-119077827 ( 4) AGGAAGCG 1 chr10:124713710-12471379 ( 16) CGGAACCT 1 chr13:41837652-41837732 ( 11) CGGAACCT 1 chr19:56152299-56152379 ( 31) CGGAACCT 1 chr9:116413109-116413189 ( 3) CGGAACCT 1 chr18:21544365-21544445 ( 54) AGGAAGCG 1 chr7:45189985-45190065 ( 22) GGGAACCA 1 chr3:193923573-193923653 ( 17) GGGAACCA 1 chr11:20088465-20088545 ( 28) GGGAACCA 1 chr12:123459217-12345929 ( 3) CGGAAGTA 1 chr13:100150830-10015091 ( 38) CGGAAGTA 1 chr11:6947469-6947549 ( 72) CGGAAGTA 1 chr15:55488848-55488928 ( 52) AGGAACCC 1 chr7:7606343-7606423 ( 23) AGGAACCC 1 chr14:69658190-69658270 ( 6) CGGAAGTG 1 chr12:51327551-51327631 ( 16) GGGAACCT 1 chr10:131076183-13107626 ( 57) AGGAACCC 1 chr14:103851529-10385160 ( 9) AGGAACCC 1 chr16:47753809-47753889 ( 5) GGGAACCT 1 chr2:190627898-190627978 ( 58) CGGAAGTG 1 chr10:80305686-80305766 ( 69) GGGAACCT 1 chr13:53191550-53191630 ( 44) AGGAACCC 1 chr11:74699630-74699710 ( 18) GGGAACCT 1 chr18:73967189-73967269 ( 14) CGGAAGTG 1 chr13:20763482-20763562 ( 30) GGGAAGTA 1 chr12:6602509-6602589 ( 33) CGGAAGTT 1 chr8:30584796-30584876 ( 26) CGGAAGCA 1 chr17:37844331-37844411 ( 3) CGGAAGTT 1 chr7:127761849-127761929 ( 30) AGGAAATA 1 chr20:18547962-18548042 ( 34) CGGAAGCG 1 chr4:1722971-1723051 ( 28) CGGAACTC 1 chr14:23030743-23030823 ( 5) AGGAAATG 1 chr20:52104155-52104235 ( 31) AGGAAATG 1 chr19:56092290-56092370 ( 62) CGGAAGCG 1 chr19:44555789-44555869 ( 34) GGGAAGTG 1 chr20:55776564-55776644 ( 28) GGGAAGTG 1 chr12:3982217-3982297 ( 45) CGGAACTC 1 chr8:2129919-2129999 ( 14) GGGAAGTG 1 chr19:51963892-51963972 ( 30) GGGAAGTT 1 chr3:127872202-127872282 ( 16) CGGAAGCT 1 chr13:42833866-42833946 ( 40) AGGAAGTC 1 chr22:35470718-35470798 ( 1) AGGAACAA 1 chr1:167121860-167121940 ( 70) AGGAAGTC 1 chr12:38710471-38710551 ( 42) AGGAAACA 1 chrX:48366832-48366912 ( 27) GGGAAGCA 1 chr13:111521947-11152202 ( 43) AGGAAACA 1 chr12:71988199-71988279 ( 40) AGGAAACA 1 chr20:39949807-39949887 ( 73) AGGAAACA 1 chr11:125808411-12580849 ( 69) AGGAACAG 1 chr5:169011011-169011091 ( 8) CGGAACCC 1 chr15:57179176-57179256 ( 21) CGGAACCC 1 chrX:25057303-25057383 ( 14) CGGAACCC 1 chr14:105399775-10539985 ( 55) GGGAAGCG 1 chr16:3162488-3162568 ( 6) CGGAACCC 1 chr1:16127157-16127237 ( 73) GGGAACTC 1 chr3:139063304-139063384 ( 15) GGGAACTC 1 chr14:89017839-89017919 ( 9) CGGAACCC 1 chr1:208067696-208067776 ( 17) AGGAACAG 1 chr19:37958420-37958500 ( 38) AGGAAGCC 1 chr5:173719493-173719573 ( 13) AGGAACAT 1 chr8:132902945-132903025 ( 15) AGGAACAT 1 chr10:98346279-98346359 ( 35) CGGAAATG 1 chr6:30119483-30119563 ( 55) GGGAACCC 1 chr14:37641222-37641302 ( 22) GGGAACCC 1 chr11:31391317-31391397 ( 51) CGGAACAG 1 chr2:30979140-30979220 ( 4) CGGAACAG 1 chr19:37157734-37157814 ( 29) GGGAAATG 1 chr19:52643143-52643223 ( 51) CGGAAACT 1 chr4:120221760-120221840 ( 5) CGGAAACT 1 chr19:48210618-48210698 ( 1) GGGAACAA 1 chr2:16499788-16499868 ( 51) AGGAAGAG 1 chr22:19749401-19749481 ( 52) GGGAACAA 1 chr10:89879974-89880054 ( 49) GGGAACAA 1 chr14:24702053-24702133 ( 17) CGGAAACT 1 chr13:42535249-42535329 ( 20) CGGAAACT 1 chr1:47693500-47693580 ( 24) GGGAAACA 1 chr14:100704318-10070439 ( 28) GGGAAACA 1 chr19:49362015-49362095 ( 64) GGGAAACG 1 chr8:126575900-126575980 ( 48) AGGAAACC 1 chr14:90967274-90967354 ( 60) CGGAAGAG 1 chr22:43539428-43539508 ( 40) GGGAAGAA 1 chr6:27247640-27247720 ( 43) AGGAAAAA 1 chr1:247372939-247373019 ( 65) GGGAAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGGAASYD MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.42349 E= 1.3e-044 95 17 -15 -1374 -1374 -1374 182 -1374 -1374 -1374 182 -1374 215 -1374 -1374 -1374 215 -1374 -1374 -1374 -78 98 21 -1374 -105 75 -1374 98 37 -83 21 6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGGAASYD MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 137 E= 1.3e-044 0.437956 0.306569 0.255474 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.131387 0.540146 0.328467 0.000000 0.109489 0.459854 0.000000 0.430657 0.291971 0.153285 0.328467 0.226277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGGAASYD MEME-1 regular expression -------------------------------------------------------------------------------- [ACG]GGAA[CG][CT][GAT] -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF STTCCKSB MEME-2 width = 8 sites = 122 llr = 783 E-value = 1.1e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif STTCCKSB MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1:1 pos.-specific C 5::9a243 probability G 4::::352 matrix T 1aa1:414 bits 2.2 ** 2.0 ** * 1.8 ** * 1.5 ** * Relative 1.3 **** Entropy 1.1 **** (9.3 bits) 0.9 **** 0.7 ***** * 0.4 ***** * 0.2 ******** 0.0 -------- Multilevel CTTCCTGT consensus G GCC sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTCCKSB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:5566315-5566395 20 1.30e-05 gtctccctca cttcctgt ctcccattat chr11:125808411-12580849 10 1.30e-05 gacaggctc cttcctgt ttgcatctgt chr1:36866735-36866815 73 1.30e-05 ccagccaccg cttcctgt chr22:35470718-35470798 20 1.30e-05 TTCTAGGACA CTTCCTGT GTCACATCTT chr1:48217022-48217102 44 1.30e-05 TAAAATGATA CTTCCTGT GTTACATAAT chr10:80305686-80305766 24 1.30e-05 TGCCATGACA CTTCCTGT GTAACGCACT chr7:102533278-102533358 42 1.30e-05 ctcttcccaa cttcctgt tggtagctta chr9:130218040-130218120 36 1.30e-05 ggggttggac cttcctgt gtcacattct chr3:127279546-127279626 1 1.30e-05 . CTTCCTGT TTCTCTTACA chr16:3162488-3162568 71 1.30e-05 CTGGGAGGGA CTTCCTGT CT chr2:130201024-130201104 17 1.30e-05 TGATGTGACA CTTCCTGT GTTGCACTAT chr22:31556060-31556140 11 5.53e-05 GGTTCCTCCG CTTCCTGC CCGCAGGCGG chr11:2913886-2913966 1 5.53e-05 . cttcctGC CCTATCCCCC chr10:134778996-13477907 33 5.53e-05 CTGGCGTTAC CTTCCTGC CATTCCCACT chr10:135201820-13520190 71 5.53e-05 ctgcttttct gttcctgt gt chrX:131352181-131352261 57 7.22e-05 GACGGGATCA CTTCCGGT GGGGAAAGTC chr12:6602509-6602589 17 7.22e-05 CGCCTCAGTG CTTCCGGT CCGCCTGCCG chr20:55685689-55685769 7 7.22e-05 TGCTGT CTTCCGGT TCGGCGTGTG chr13:41345332-41345412 35 1.18e-04 GGCCTGGCGC CTTCCTCC CCCTTTGCGC chr6:27721919-27721999 72 1.18e-04 CAGGGGGACA CTTCCTCC T chr5:148668149-148668229 28 1.18e-04 CAGTTTTCCA CTTCCTCC TGGACCCATT chr10:98346279-98346359 62 1.18e-04 CGCTCCCAAG GTTCCTGC TCCGCCAGGC chr13:111521947-11152202 27 1.18e-04 CTCTGCTTCT CTTCCTCC GAATAAAAAG chr13:93031788-93031868 34 1.18e-04 TTGCATATTA GTTCCTCT CTGTGCCCCC chr11:20088465-20088545 6 1.18e-04 GGAGG GTTCCTCT TTATGAGCCC chr2:73968066-73968146 24 1.35e-04 catccccaaa cttcctgg tgtcaccagc chr5:39266664-39266744 29 1.35e-04 GGCTTGCTCC CTTCCTGG ACAGTTCAGG chr13:41837652-41837732 66 1.35e-04 ATCACGTTCA CTTCCTGG TTCACTT chr22:47655906-47655986 21 1.35e-04 TTTCTGGCTC CTTCCTGG TGCAGCTTGG chr6:30119483-30119563 44 1.35e-04 GACTTGAGCA CTTCCTGG GGAGGGAACC chr2:171786937-171787017 34 1.35e-04 AGAGAGTGCA CTTCCTGG TGCTACCTTC chr20:19997930-19998010 52 1.90e-04 CTCCGGGAGA CTTCCGGC AGGGCGGGCG chr11:31391317-31391397 62 1.90e-04 GGAACAGTGA CTTCCGGC GGAAGAAGAA chr5:169011011-169011091 52 1.90e-04 CCGGTCTTAT CTTCCGCT GGACCACCTC chr19:56152299-56152379 57 1.90e-04 GGCTCGCGCG CTTCCGGC CGGCGCCTTT chr8:41908401-41908481 60 2.22e-04 TCCGACAGTC CTTCCCGT CCCCATTCCC chr2:905945-906025 42 2.22e-04 TGGTATTTCA GTTCCTCC TGGGGTCCTC chr3:16276810-16276890 57 2.22e-04 atgaagcaag gttcctcc GGCCTCACAA chr12:45342565-45342645 69 2.56e-04 CTTTGAGAAT GTTCCTGG GAAC chr17:58156850-58156930 31 2.56e-04 CCCAGAGTTT GTTCCTGG ACAGGGCTGA chr22:38412578-38412658 65 2.56e-04 CCTCTATTGT GTTCCTGG TTTATCTG chr3:88198988-88199068 72 3.15e-04 TTGGCGATTA CTTCCGCC C chr19:17354817-17354897 69 3.15e-04 CCCTGGGGAC CTTCCGCC AGAA chr1:68614275-68614355 51 3.15e-04 CTGCGATGTG GTTCCGCT CGTGCTGATC chr2:208890262-208890342 21 3.15e-04 CTCTGAAATG CTTCCGCC GGCGGCCCGG chr8:88886366-88886446 62 3.15e-04 TGAAACAAGA GTTCCGCT GCTTCTCTCG chr20:18547962-18548042 70 3.15e-04 CTCCTTAATG GTTCCGGC GGC chr17:8060166-8060246 50 3.15e-04 TGGCGCTGGG GTTCCGGC CCTGGGTCCC chr9:35812277-35812357 61 3.15e-04 GGGTTTTAGG GTTCCGCT GGCTTAAGAC chr9:98274344-98274424 57 3.15e-04 ATGTCCTCTG GTTCCGGC GGCTGCCACA chr14:90967274-90967354 52 3.15e-04 GAGGAGGCAG GTTCCGGC CGGAAGAGGG chr4:135248646-135248726 46 3.15e-04 TGTGCAGATC GTTCCGCT GTGCTGCAGG chr22:43539428-43539508 21 3.90e-04 CCTGCCGGGG CTTCCGGG GCACCGGGAG chr6:33388962-33389042 46 3.90e-04 CCCTTCTGTC CTTCCCCT ATATCAGTCC chr19:52643143-52643223 38 3.90e-04 GCGCAATCTG CTTCCGGG AGTGACGGAA chr11:132934479-13293455 66 3.90e-04 GGGAATGGGA CTTCCGGG CCGGGCC chr19:56165646-56165726 26 3.90e-04 TTCTCTATCC CTTCCCCT GATCCATCTC chr16:70465068-70465148 9 3.90e-04 CTCCTCAT CTTCCCCT CTTCACTGTC chr6:84712126-84712206 18 3.90e-04 CAGACAAATT CTTCCCCT CCCCTACTGT chr3:121638102-121638182 55 5.53e-04 agctcagcaa gttccggg ttcttgtccc chr1:19641978-19642058 10 5.53e-04 GCTGACTCA CTTCCTTT CCCTCCCGGT chr13:52768581-52768661 27 5.53e-04 GGTCTGGCTT GTTCCCCT CCCTTTGCTT chr6:161865692-161865772 66 5.53e-04 GGAAACATTT GTTCCCCT TGATGAA chr14:24702053-24702133 66 5.53e-04 ACATTCCTTC GTTCCCCT AAATCAG chr19:56092290-56092370 1 5.53e-04 . CTTCCCCC CGGAAACCTG chr13:42535249-42535329 29 5.53e-04 CCGGAAACTC CTTCCCCC GCGGCGCGGC chr2:172779815-172779895 27 5.53e-04 agcgatcata gttccggg cagcttccaa chr18:73967189-73967269 60 5.53e-04 TTCAGACTGA CTTCCTTT CAGGCGTTCT chr4:38607708-38607788 5 5.53e-04 ACCT CTTCCCCC ACTCCACCCT chr17:40169850-40169930 37 5.84e-04 TCCACAGCTT CTTCCCGG GAAAGTCAAG chr17:2878814-2878894 31 5.94e-04 actcctgatg tttcctgt ggctagaggg chr6:27247640-27247720 52 6.87e-04 CAGGAAAAAT GTTCCTGA GCGGAAAGAT chr19:37329222-37329302 46 6.87e-04 ATGGTGGAAG GTTCCGCG ATCTTTCTAT chr7:66460779-66460859 17 6.87e-04 GCACCACCTC GTTCCGCG GAATTCAAGG chr16:72048150-72048230 49 6.87e-04 gttaaaaata gttccccc agtgctccat chr8:126575900-126575980 72 6.87e-04 CCCACCCAAG GTTCCTTT C chr10:131076183-13107626 33 7.76e-04 TGCCCTGGGA CTTTCTGC CCAGCAGGTG chr17:37844331-37844411 62 7.76e-04 TTAAATTAAA GTTCCCGG ATTTTTGTGG chrX:119077747-119077827 63 7.76e-04 TGCGTGCATC CTTCCAGT TCCGAGTGAG chr10:124713710-12471379 26 7.76e-04 CGGAACCTCT CTTCCAGT GCTTGAATTT chr1:177953448-177953528 15 7.76e-04 TGCCCAGAAC CTTTCTGC TTCAGCAGCA chr14:89017839-89017919 18 7.76e-04 CCGGAACCCT CTTTCTGC AGCCGCGTTT chr5:173719493-173719573 55 7.76e-04 ctgggggaga ctttctct gagcattcgt chr5:7995969-7996049 21 8.30e-04 ggaactgttc tttcctgc ccagacgttt chr15:82554336-82554416 20 8.30e-04 TTTGCTCATC CTTCCGGA TCCAAAGGCT chr21:37546294-37546374 23 8.30e-04 CACAGTTCAG CTTCCGGA GTCTTCATCA chr1:244427634-244427714 44 8.30e-04 GGGGAAACTC CTTCCGGA TAGAAACCAA chr5:42756856-42756936 44 8.30e-04 GGGGATTCGG CTTCCGGA GGAGGGGACA chr21:36089573-36089653 58 8.70e-04 GCACACTTTG GTTCCTTC TCCGGGCGGC chr6:99842049-99842129 29 9.98e-04 TCCCACCTCT TTTCCGGT CCCTCCCGAA chr19:44555789-44555869 16 9.98e-04 TATGAAATTC GTTCCCCG TGGGTGTTGC chr3:132378989-132379069 29 9.98e-04 AAAAGACCCT GTTTCTCT TAGATACCCG chr14:96087171-96087251 62 9.98e-04 GAGGGGAAGG GTTTCTCT GATGCTCAGG chr19:17420905-17420985 27 9.98e-04 GATTGTCCCG GTTCCCCG GGCCCTGACC chr1:27938134-27938214 62 9.98e-04 AGCTTCCAGA GTTTCTCT CAGGGGAACG chr17:26898714-26898794 60 9.98e-04 CTGGAACGAA GTTCCCCG CTTCCCTGTA chr15:57179176-57179256 11 9.98e-04 CACAGATACT CTTTCTCC TACGGAACCC chr9:140118155-140118235 3 1.09e-03 GA CTTCCGTC GCCGGCCTCT chr4:120221760-120221840 53 1.09e-03 CGCGCCCCGG GTTCCGGA ATGCACTCTG chr10:105440775-10544085 25 1.09e-03 GAACCAGTGA CTTTCTGG CCGTGGGCCA chr16:2771119-2771199 4 1.18e-03 ACC GTTTCGGT GTCCCCGCCT chr11:6846681-6846761 61 1.29e-03 aagccattag gttccact cacgattgtg chr7:6749621-6749701 59 1.29e-03 gagcacttag gttccact tcgtggttgc chr8:67578829-67578909 62 1.38e-03 CGAGCAGCGC GTTCCGCA GCAGGTTGTG chr19:37958420-37958500 62 1.38e-03 AGTGTGTTTA GTTCCGTC TTTTTGGGTC chr19:19499532-19499612 47 1.52e-03 ATAACTTAAC CTTCCCTC CCCGTGCTGA chr6:32160710-32160790 45 1.52e-03 AGCCAGGTCC CTTCCCTC CCTAAGATAG chr7:45189985-45190065 5 1.52e-03 GTGG CTTCCGTG TGGCTTTGTG chr19:39154977-39155057 22 1.52e-03 TTGATATTGC CTTCCCCA CACCGACAAA chr12:119941461-11994154 50 1.62e-03 GTGCAAGAAG GTTCCACC CATAGTCAGT chr4:66107535-66107615 13 1.62e-03 tggacagctc ctttccgc aggcgggttg chr9:131644837-131644917 52 1.62e-03 GTTCCTAGAG GTTCCACC TCTGGGCTCT chr13:115000253-11500033 45 1.71e-03 TCGGGTCCGT TTTCCCGC GCCAGATGGG chr14:69658190-69658270 62 1.71e-03 GGCCGCACAG GTTCCAGG TCTTTAACGT chr14:21342062-21342142 52 1.71e-03 AAGGAAGCGG TTTCCCGC CAGGGTATCG chr8:125796890-125796970 25 1.71e-03 Tggaacctcc tttcccct tgctgtgtgt chr22:45705755-45705835 7 1.90e-03 CCGTTG GTTTCGGG ACGGAACGTT chr14:61201397-61201477 57 1.90e-03 TGCCGGTGCT CTTTCGCG AAGGGACCGT chr8:132902945-132903025 41 1.90e-03 tttatctgtt gtttccct ccaggtggaa chr14:100704318-10070439 60 1.99e-03 GCGTCTCAGG TTTCCGCG GGTCACTAAA chr6:6584230-6584310 46 1.99e-03 AGTTGCATGG TTTCCTGA CTTCTACACA chr6:147982016-147982096 48 2.14e-03 TCAGGCACAG GTTTCTTT GGGACAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTCCKSB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:5566315-5566395 1.3e-05 19_[+2]_53 chr11:125808411-12580849 1.3e-05 9_[+2]_63 chr1:36866735-36866815 1.3e-05 72_[+2] chr22:35470718-35470798 1.3e-05 19_[+2]_53 chr1:48217022-48217102 1.3e-05 43_[+2]_29 chr10:80305686-80305766 1.3e-05 23_[+2]_49 chr7:102533278-102533358 1.3e-05 41_[+2]_31 chr9:130218040-130218120 1.3e-05 35_[+2]_37 chr3:127279546-127279626 1.3e-05 [+2]_72 chr16:3162488-3162568 1.3e-05 70_[+2]_2 chr2:130201024-130201104 1.3e-05 16_[+2]_56 chr22:31556060-31556140 5.5e-05 10_[+2]_62 chr11:2913886-2913966 5.5e-05 [+2]_72 chr10:134778996-13477907 5.5e-05 32_[+2]_40 chr10:135201820-13520190 5.5e-05 70_[+2]_2 chrX:131352181-131352261 7.2e-05 56_[+2]_16 chr12:6602509-6602589 7.2e-05 16_[+2]_56 chr20:55685689-55685769 7.2e-05 6_[+2]_66 chr13:41345332-41345412 0.00012 34_[+2]_38 chr6:27721919-27721999 0.00012 71_[+2]_1 chr5:148668149-148668229 0.00012 27_[+2]_45 chr10:98346279-98346359 0.00012 61_[+2]_11 chr13:111521947-11152202 0.00012 26_[+2]_46 chr13:93031788-93031868 0.00012 33_[+2]_39 chr11:20088465-20088545 0.00012 5_[+2]_67 chr2:73968066-73968146 0.00013 23_[+2]_49 chr5:39266664-39266744 0.00013 28_[+2]_44 chr13:41837652-41837732 0.00013 65_[+2]_7 chr22:47655906-47655986 0.00013 20_[+2]_52 chr6:30119483-30119563 0.00013 43_[+2]_29 chr2:171786937-171787017 0.00013 33_[+2]_39 chr20:19997930-19998010 0.00019 51_[+2]_21 chr11:31391317-31391397 0.00019 61_[+2]_11 chr5:169011011-169011091 0.00019 51_[+2]_21 chr19:56152299-56152379 0.00019 56_[+2]_16 chr8:41908401-41908481 0.00022 59_[+2]_13 chr2:905945-906025 0.00022 41_[+2]_31 chr3:16276810-16276890 0.00022 56_[+2]_16 chr12:45342565-45342645 0.00026 68_[+2]_4 chr17:58156850-58156930 0.00026 30_[+2]_42 chr22:38412578-38412658 0.00026 64_[+2]_8 chr3:88198988-88199068 0.00032 71_[+2]_1 chr19:17354817-17354897 0.00032 68_[+2]_4 chr1:68614275-68614355 0.00032 50_[+2]_22 chr2:208890262-208890342 0.00032 20_[+2]_52 chr8:88886366-88886446 0.00032 61_[+2]_11 chr20:18547962-18548042 0.00032 69_[+2]_3 chr17:8060166-8060246 0.00032 49_[+2]_23 chr9:35812277-35812357 0.00032 60_[+2]_12 chr9:98274344-98274424 0.00032 56_[+2]_16 chr14:90967274-90967354 0.00032 51_[+2]_21 chr4:135248646-135248726 0.00032 45_[+2]_27 chr22:43539428-43539508 0.00039 20_[+2]_52 chr6:33388962-33389042 0.00039 45_[+2]_27 chr19:52643143-52643223 0.00039 37_[+2]_35 chr11:132934479-13293455 0.00039 65_[+2]_7 chr19:56165646-56165726 0.00039 25_[+2]_47 chr16:70465068-70465148 0.00039 8_[+2]_64 chr6:84712126-84712206 0.00039 17_[+2]_55 chr3:121638102-121638182 0.00055 54_[+2]_18 chr1:19641978-19642058 0.00055 9_[+2]_63 chr13:52768581-52768661 0.00055 26_[+2]_46 chr6:161865692-161865772 0.00055 65_[+2]_7 chr14:24702053-24702133 0.00055 65_[+2]_7 chr19:56092290-56092370 0.00055 [+2]_72 chr13:42535249-42535329 0.00055 28_[+2]_44 chr2:172779815-172779895 0.00055 26_[+2]_46 chr18:73967189-73967269 0.00055 59_[+2]_13 chr4:38607708-38607788 0.00055 4_[+2]_68 chr17:40169850-40169930 0.00058 36_[+2]_36 chr17:2878814-2878894 0.00059 30_[+2]_42 chr6:27247640-27247720 0.00069 51_[+2]_21 chr19:37329222-37329302 0.00069 45_[+2]_27 chr7:66460779-66460859 0.00069 16_[+2]_56 chr16:72048150-72048230 0.00069 48_[+2]_24 chr8:126575900-126575980 0.00069 71_[+2]_1 chr10:131076183-13107626 0.00078 32_[+2]_40 chr17:37844331-37844411 0.00078 61_[+2]_11 chrX:119077747-119077827 0.00078 62_[+2]_10 chr10:124713710-12471379 0.00078 25_[+2]_47 chr1:177953448-177953528 0.00078 14_[+2]_58 chr14:89017839-89017919 0.00078 17_[+2]_55 chr5:173719493-173719573 0.00078 54_[+2]_18 chr5:7995969-7996049 0.00083 20_[+2]_52 chr15:82554336-82554416 0.00083 19_[+2]_53 chr21:37546294-37546374 0.00083 22_[+2]_50 chr1:244427634-244427714 0.00083 43_[+2]_29 chr5:42756856-42756936 0.00083 43_[+2]_29 chr21:36089573-36089653 0.00087 57_[+2]_15 chr6:99842049-99842129 0.001 28_[+2]_44 chr19:44555789-44555869 0.001 15_[+2]_57 chr3:132378989-132379069 0.001 28_[+2]_44 chr14:96087171-96087251 0.001 61_[+2]_11 chr19:17420905-17420985 0.001 26_[+2]_46 chr1:27938134-27938214 0.001 61_[+2]_11 chr17:26898714-26898794 0.001 59_[+2]_13 chr15:57179176-57179256 0.001 10_[+2]_62 chr9:140118155-140118235 0.0011 2_[+2]_70 chr4:120221760-120221840 0.0011 52_[+2]_20 chr10:105440775-10544085 0.0011 24_[+2]_48 chr16:2771119-2771199 0.0012 3_[+2]_69 chr11:6846681-6846761 0.0013 60_[+2]_12 chr7:6749621-6749701 0.0013 58_[+2]_14 chr8:67578829-67578909 0.0014 61_[+2]_11 chr19:37958420-37958500 0.0014 61_[+2]_11 chr19:19499532-19499612 0.0015 46_[+2]_26 chr6:32160710-32160790 0.0015 44_[+2]_28 chr7:45189985-45190065 0.0015 4_[+2]_68 chr19:39154977-39155057 0.0015 21_[+2]_51 chr12:119941461-11994154 0.0016 49_[+2]_23 chr4:66107535-66107615 0.0016 12_[+2]_60 chr9:131644837-131644917 0.0016 51_[+2]_21 chr13:115000253-11500033 0.0017 44_[+2]_28 chr14:69658190-69658270 0.0017 61_[+2]_11 chr14:21342062-21342142 0.0017 51_[+2]_21 chr8:125796890-125796970 0.0017 24_[+2]_48 chr22:45705755-45705835 0.0019 6_[+2]_66 chr14:61201397-61201477 0.0019 56_[+2]_16 chr8:132902945-132903025 0.0019 40_[+2]_32 chr14:100704318-10070439 0.002 59_[+2]_13 chr6:6584230-6584310 0.002 45_[+2]_27 chr6:147982016-147982096 0.0021 47_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTCCKSB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STTCCKSB width=8 seqs=122 chr16:5566315-5566395 ( 20) CTTCCTGT 1 chr11:125808411-12580849 ( 10) CTTCCTGT 1 chr1:36866735-36866815 ( 73) CTTCCTGT 1 chr22:35470718-35470798 ( 20) CTTCCTGT 1 chr1:48217022-48217102 ( 44) CTTCCTGT 1 chr10:80305686-80305766 ( 24) CTTCCTGT 1 chr7:102533278-102533358 ( 42) CTTCCTGT 1 chr9:130218040-130218120 ( 36) CTTCCTGT 1 chr3:127279546-127279626 ( 1) CTTCCTGT 1 chr16:3162488-3162568 ( 71) CTTCCTGT 1 chr2:130201024-130201104 ( 17) CTTCCTGT 1 chr22:31556060-31556140 ( 11) CTTCCTGC 1 chr11:2913886-2913966 ( 1) CTTCCTGC 1 chr10:134778996-13477907 ( 33) CTTCCTGC 1 chr10:135201820-13520190 ( 71) GTTCCTGT 1 chrX:131352181-131352261 ( 57) CTTCCGGT 1 chr12:6602509-6602589 ( 17) CTTCCGGT 1 chr20:55685689-55685769 ( 7) CTTCCGGT 1 chr13:41345332-41345412 ( 35) CTTCCTCC 1 chr6:27721919-27721999 ( 72) CTTCCTCC 1 chr5:148668149-148668229 ( 28) CTTCCTCC 1 chr10:98346279-98346359 ( 62) GTTCCTGC 1 chr13:111521947-11152202 ( 27) CTTCCTCC 1 chr13:93031788-93031868 ( 34) GTTCCTCT 1 chr11:20088465-20088545 ( 6) GTTCCTCT 1 chr2:73968066-73968146 ( 24) CTTCCTGG 1 chr5:39266664-39266744 ( 29) CTTCCTGG 1 chr13:41837652-41837732 ( 66) CTTCCTGG 1 chr22:47655906-47655986 ( 21) CTTCCTGG 1 chr6:30119483-30119563 ( 44) CTTCCTGG 1 chr2:171786937-171787017 ( 34) CTTCCTGG 1 chr20:19997930-19998010 ( 52) CTTCCGGC 1 chr11:31391317-31391397 ( 62) CTTCCGGC 1 chr5:169011011-169011091 ( 52) CTTCCGCT 1 chr19:56152299-56152379 ( 57) CTTCCGGC 1 chr8:41908401-41908481 ( 60) CTTCCCGT 1 chr2:905945-906025 ( 42) GTTCCTCC 1 chr3:16276810-16276890 ( 57) GTTCCTCC 1 chr12:45342565-45342645 ( 69) GTTCCTGG 1 chr17:58156850-58156930 ( 31) GTTCCTGG 1 chr22:38412578-38412658 ( 65) GTTCCTGG 1 chr3:88198988-88199068 ( 72) CTTCCGCC 1 chr19:17354817-17354897 ( 69) CTTCCGCC 1 chr1:68614275-68614355 ( 51) GTTCCGCT 1 chr2:208890262-208890342 ( 21) CTTCCGCC 1 chr8:88886366-88886446 ( 62) GTTCCGCT 1 chr20:18547962-18548042 ( 70) GTTCCGGC 1 chr17:8060166-8060246 ( 50) GTTCCGGC 1 chr9:35812277-35812357 ( 61) GTTCCGCT 1 chr9:98274344-98274424 ( 57) GTTCCGGC 1 chr14:90967274-90967354 ( 52) GTTCCGGC 1 chr4:135248646-135248726 ( 46) GTTCCGCT 1 chr22:43539428-43539508 ( 21) CTTCCGGG 1 chr6:33388962-33389042 ( 46) CTTCCCCT 1 chr19:52643143-52643223 ( 38) CTTCCGGG 1 chr11:132934479-13293455 ( 66) CTTCCGGG 1 chr19:56165646-56165726 ( 26) CTTCCCCT 1 chr16:70465068-70465148 ( 9) CTTCCCCT 1 chr6:84712126-84712206 ( 18) CTTCCCCT 1 chr3:121638102-121638182 ( 55) GTTCCGGG 1 chr1:19641978-19642058 ( 10) CTTCCTTT 1 chr13:52768581-52768661 ( 27) GTTCCCCT 1 chr6:161865692-161865772 ( 66) GTTCCCCT 1 chr14:24702053-24702133 ( 66) GTTCCCCT 1 chr19:56092290-56092370 ( 1) CTTCCCCC 1 chr13:42535249-42535329 ( 29) CTTCCCCC 1 chr2:172779815-172779895 ( 27) GTTCCGGG 1 chr18:73967189-73967269 ( 60) CTTCCTTT 1 chr4:38607708-38607788 ( 5) CTTCCCCC 1 chr17:40169850-40169930 ( 37) CTTCCCGG 1 chr17:2878814-2878894 ( 31) TTTCCTGT 1 chr6:27247640-27247720 ( 52) GTTCCTGA 1 chr19:37329222-37329302 ( 46) GTTCCGCG 1 chr7:66460779-66460859 ( 17) GTTCCGCG 1 chr16:72048150-72048230 ( 49) GTTCCCCC 1 chr8:126575900-126575980 ( 72) GTTCCTTT 1 chr10:131076183-13107626 ( 33) CTTTCTGC 1 chr17:37844331-37844411 ( 62) GTTCCCGG 1 chrX:119077747-119077827 ( 63) CTTCCAGT 1 chr10:124713710-12471379 ( 26) CTTCCAGT 1 chr1:177953448-177953528 ( 15) CTTTCTGC 1 chr14:89017839-89017919 ( 18) CTTTCTGC 1 chr5:173719493-173719573 ( 55) CTTTCTCT 1 chr5:7995969-7996049 ( 21) TTTCCTGC 1 chr15:82554336-82554416 ( 20) CTTCCGGA 1 chr21:37546294-37546374 ( 23) CTTCCGGA 1 chr1:244427634-244427714 ( 44) CTTCCGGA 1 chr5:42756856-42756936 ( 44) CTTCCGGA 1 chr21:36089573-36089653 ( 58) GTTCCTTC 1 chr6:99842049-99842129 ( 29) TTTCCGGT 1 chr19:44555789-44555869 ( 16) GTTCCCCG 1 chr3:132378989-132379069 ( 29) GTTTCTCT 1 chr14:96087171-96087251 ( 62) GTTTCTCT 1 chr19:17420905-17420985 ( 27) GTTCCCCG 1 chr1:27938134-27938214 ( 62) GTTTCTCT 1 chr17:26898714-26898794 ( 60) GTTCCCCG 1 chr15:57179176-57179256 ( 11) CTTTCTCC 1 chr9:140118155-140118235 ( 3) CTTCCGTC 1 chr4:120221760-120221840 ( 53) GTTCCGGA 1 chr10:105440775-10544085 ( 25) CTTTCTGG 1 chr16:2771119-2771199 ( 4) GTTTCGGT 1 chr11:6846681-6846761 ( 61) GTTCCACT 1 chr7:6749621-6749701 ( 59) GTTCCACT 1 chr8:67578829-67578909 ( 62) GTTCCGCA 1 chr19:37958420-37958500 ( 62) GTTCCGTC 1 chr19:19499532-19499612 ( 47) CTTCCCTC 1 chr6:32160710-32160790 ( 45) CTTCCCTC 1 chr7:45189985-45190065 ( 5) CTTCCGTG 1 chr19:39154977-39155057 ( 22) CTTCCCCA 1 chr12:119941461-11994154 ( 50) GTTCCACC 1 chr4:66107535-66107615 ( 13) CTTTCCGC 1 chr9:131644837-131644917 ( 52) GTTCCACC 1 chr13:115000253-11500033 ( 45) TTTCCCGC 1 chr14:69658190-69658270 ( 62) GTTCCAGG 1 chr14:21342062-21342142 ( 52) TTTCCCGC 1 chr8:125796890-125796970 ( 25) TTTCCCCT 1 chr22:45705755-45705835 ( 7) GTTTCGGG 1 chr14:61201397-61201477 ( 57) CTTTCGCG 1 chr8:132902945-132903025 ( 41) GTTTCCCT 1 chr14:100704318-10070439 ( 60) TTTCCGCG 1 chr6:6584230-6584310 ( 46) TTTCCTGA 1 chr6:147982016-147982096 ( 48) GTTTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTCCKSB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.50779 E= 1.1e-017 -1357 101 44 -173 -1357 -1357 -1357 220 -1357 -1357 -1357 220 -1357 168 -1357 -82 -1357 187 -1357 -1357 -198 -41 17 94 -1357 50 91 -141 -161 23 -36 82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTCCKSB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 122 E= 1.1e-017 0.000000 0.549180 0.385246 0.065574 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.877049 0.000000 0.122951 0.000000 1.000000 0.000000 0.000000 0.057377 0.204918 0.319672 0.418033 0.000000 0.385246 0.532787 0.081967 0.073770 0.319672 0.221311 0.385246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTCCKSB MEME-2 regular expression -------------------------------------------------------------------------------- [CG]TTCC[TGC][GC][TCG] -------------------------------------------------------------------------------- Time 8.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTKACAC MEME-3 width = 8 sites = 24 llr = 216 E-value = 1.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTKACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::28:a: pos.-specific C :::12a:a probability G 2a:4:::: matrix T 8:a4:::: bits 2.2 * * 2.0 * *** 1.8 ** *** 1.5 ** **** Relative 1.3 *** **** Entropy 1.1 *** **** (13.0 bits) 0.9 *** **** 0.7 *** **** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel TGTGACAC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:13774317-13774397 29 1.12e-05 TGCTTAATAG TGTTACAC AGGAAGTGAC chr19:48210618-48210698 57 1.12e-05 atgatttcgc tgttacac tgagacggga chr19:8617757-8617837 41 1.12e-05 CATTTAAGAA TGTTACAC AGGGGTGTCA chr6:6584230-6584310 24 1.12e-05 TGTGAAACAG TGTTACAC AGGAAGTTGC chr11:46958170-46958250 64 2.56e-05 AGACTGTTTG TGTGACAC CTCCTCCAG chr18:372773-372853 51 2.56e-05 CATTTAACGC TGTGACAC AGGAAGTGTC chr9:129978725-129978805 62 2.56e-05 GACCCTATTG TGTGACAC TTGATAGTTA chr17:31966562-31966642 61 2.56e-05 CTGTTAATCC TGTGACAC AGGAAGTACA chr3:9199501-9199581 37 2.56e-05 CAACTAATGA TGTGACAC AGGAAGTAAT chr5:7995969-7996049 66 3.72e-05 gcctaataag tgtaacac gctgacc chr5:132486748-132486828 63 3.72e-05 TACTCTTTGG TGTAACAC CTGACTGGTT chr8:125796890-125796970 68 3.72e-05 catcgatgca tgtaacac tcctg chr17:2878814-2878894 59 3.72e-05 aatactttgg tgtaacac ccgggctctc chr8:28748903-28748983 41 5.17e-05 ACCGTGTTTT GGTTACAC TATTGGGGCT chr3:193923573-193923653 68 5.17e-05 GGCCTTGAGA GGTTACAC GTAGT chr12:45342565-45342645 20 6.57e-05 CTCTAGGTGG TGTCACAC ACCCTTGCTT chr21:37546294-37546374 8 6.57e-05 TCTGTGG TGTCACAC AGTTCAGCTT chr14:21342062-21342142 5 8.45e-05 TTCC GGTGACAC CCCTGGAGCC chrX:48366832-48366912 58 8.45e-05 TGTGTTCCTA GGTGACAC AGTCATTACT chr19:49262484-49262564 38 8.45e-05 GCTTTTACGA GGTGACAC AGCACACTCA chr11:1283865-1283945 22 9.80e-05 CCTTTCACCC TGTTCCAC GCGCACCTCT chrX:3061467-3061547 39 9.80e-05 AGAAAGTGTA TGTTCCAC AGGGGAGGAA chr3:16276810-16276890 3 9.80e-05 ag tgttccac taattgatgc chr11:31391317-31391397 9 1.15e-04 TTCTGAGC TGTGCCAC GGCCACATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:13774317-13774397 1.1e-05 28_[+3]_44 chr19:48210618-48210698 1.1e-05 56_[+3]_16 chr19:8617757-8617837 1.1e-05 40_[+3]_32 chr6:6584230-6584310 1.1e-05 23_[+3]_49 chr11:46958170-46958250 2.6e-05 63_[+3]_9 chr18:372773-372853 2.6e-05 50_[+3]_22 chr9:129978725-129978805 2.6e-05 61_[+3]_11 chr17:31966562-31966642 2.6e-05 60_[+3]_12 chr3:9199501-9199581 2.6e-05 36_[+3]_36 chr5:7995969-7996049 3.7e-05 65_[+3]_7 chr5:132486748-132486828 3.7e-05 62_[+3]_10 chr8:125796890-125796970 3.7e-05 67_[+3]_5 chr17:2878814-2878894 3.7e-05 58_[+3]_14 chr8:28748903-28748983 5.2e-05 40_[+3]_32 chr3:193923573-193923653 5.2e-05 67_[+3]_5 chr12:45342565-45342645 6.6e-05 19_[+3]_53 chr21:37546294-37546374 6.6e-05 7_[+3]_65 chr14:21342062-21342142 8.4e-05 4_[+3]_68 chrX:48366832-48366912 8.4e-05 57_[+3]_15 chr19:49262484-49262564 8.4e-05 37_[+3]_35 chr11:1283865-1283945 9.8e-05 21_[+3]_51 chrX:3061467-3061547 9.8e-05 38_[+3]_34 chr3:16276810-16276890 9.8e-05 2_[+3]_70 chr11:31391317-31391397 0.00012 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTKACAC width=8 seqs=24 chr16:13774317-13774397 ( 29) TGTTACAC 1 chr19:48210618-48210698 ( 57) TGTTACAC 1 chr19:8617757-8617837 ( 41) TGTTACAC 1 chr6:6584230-6584310 ( 24) TGTTACAC 1 chr11:46958170-46958250 ( 64) TGTGACAC 1 chr18:372773-372853 ( 51) TGTGACAC 1 chr9:129978725-129978805 ( 62) TGTGACAC 1 chr17:31966562-31966642 ( 61) TGTGACAC 1 chr3:9199501-9199581 ( 37) TGTGACAC 1 chr5:7995969-7996049 ( 66) TGTAACAC 1 chr5:132486748-132486828 ( 63) TGTAACAC 1 chr8:125796890-125796970 ( 68) TGTAACAC 1 chr17:2878814-2878894 ( 59) TGTAACAC 1 chr8:28748903-28748983 ( 41) GGTTACAC 1 chr3:193923573-193923653 ( 68) GGTTACAC 1 chr12:45342565-45342645 ( 20) TGTCACAC 1 chr21:37546294-37546374 ( 8) TGTCACAC 1 chr14:21342062-21342142 ( 5) GGTGACAC 1 chrX:48366832-48366912 ( 58) GGTGACAC 1 chr19:49262484-49262564 ( 38) GGTGACAC 1 chr11:1283865-1283945 ( 22) TGTTCCAC 1 chrX:3061467-3061547 ( 39) TGTTCCAC 1 chr3:16276810-16276890 ( 3) TGTTCCAC 1 chr11:31391317-31391397 ( 9) TGTGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.6e-001 -1123 -1123 -44 186 -1123 -1123 182 -1123 -1123 -1123 -1123 220 -44 -171 40 78 188 -71 -1123 -1123 -1123 187 -1123 -1123 215 -1123 -1123 -1123 -1123 187 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.6e-001 0.000000 0.000000 0.208333 0.791667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.083333 0.375000 0.375000 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKACAC MEME-3 regular expression -------------------------------------------------------------------------------- [TG]GT[GT]ACAC -------------------------------------------------------------------------------- Time 12.04 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCCTG MEME-4 width = 8 sites = 10 llr = 106 E-value = 2.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3::aaa:: probability G :::::::a matrix T 7aa:::a: bits 2.2 ** * 2.0 ****** 1.8 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCCTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:17354817-17354897 56 1.30e-05 CCCCGATCGC TTTCCCTG GGGACCTTCC chr19:52643143-52643223 20 1.30e-05 CGATAAGGCC TTTCCCTG GCGCAATCTG chrX:131352181-131352261 3 1.30e-05 GG TTTCCCTG ACACACTGGC chr3:65605206-65605286 33 1.30e-05 CACGAGCCCA TTTCCCTG CAGCACAGTT chr15:57179176-57179256 46 1.30e-05 TCTTGCCCCG TTTCCCTG TCACTTTAGG chr3:139063304-139063384 6 1.30e-05 agaca tttccctg tgggaactca chr5:173719493-173719573 40 1.30e-05 acttgtattg tttccctg ggggagactt chr12:45342565-45342645 35 2.93e-05 CACACCCTTG CTTCCCTG GGCAACATCC chr17:26898714-26898794 68 2.93e-05 AAGTTCCCCG CTTCCCTG TAGAA chr13:93031788-93031868 10 2.93e-05 TGCATAGTT CTTCCCTG TGCCCCTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:17354817-17354897 1.3e-05 55_[+4]_17 chr19:52643143-52643223 1.3e-05 19_[+4]_53 chrX:131352181-131352261 1.3e-05 2_[+4]_70 chr3:65605206-65605286 1.3e-05 32_[+4]_40 chr15:57179176-57179256 1.3e-05 45_[+4]_27 chr3:139063304-139063384 1.3e-05 5_[+4]_67 chr5:173719493-173719573 1.3e-05 39_[+4]_33 chr12:45342565-45342645 2.9e-05 34_[+4]_38 chr17:26898714-26898794 2.9e-05 67_[+4]_5 chr13:93031788-93031868 2.9e-05 9_[+4]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCCTG width=8 seqs=10 chr19:17354817-17354897 ( 56) TTTCCCTG 1 chr19:52643143-52643223 ( 20) TTTCCCTG 1 chrX:131352181-131352261 ( 3) TTTCCCTG 1 chr3:65605206-65605286 ( 33) TTTCCCTG 1 chr15:57179176-57179256 ( 46) TTTCCCTG 1 chr3:139063304-139063384 ( 6) TTTCCCTG 1 chr5:173719493-173719573 ( 40) TTTCCCTG 1 chr12:45342565-45342645 ( 35) CTTCCCTG 1 chr17:26898714-26898794 ( 68) CTTCCCTG 1 chr13:93031788-93031868 ( 10) CTTCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 2.7e+001 -997 14 -997 168 -997 -997 -997 220 -997 -997 -997 220 -997 187 -997 -997 -997 187 -997 -997 -997 187 -997 -997 -997 -997 -997 220 -997 -997 182 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.7e+001 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCTG MEME-4 regular expression -------------------------------------------------------------------------------- [TC]TTCCCTG -------------------------------------------------------------------------------- Time 15.41 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGGTTCC MEME-5 width = 8 sites = 6 llr = 67 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGGTTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa:::::: pos.-specific C ::::::aa probability G ::aa:::: matrix T ::::aa:: bits 2.2 ** ** 2.0 ** **** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGGTTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:63815385-63815465 43 1.45e-05 CCCCGGGCAG AAGGTTCC TAGGCTAGGT chr2:208890262-208890342 59 1.45e-05 CCGGACACAC AAGGTTCC AGGCCGCGAG chr6:99842049-99842129 64 1.45e-05 CCCCAACATA AAGGTTCC GAGATCACT chr11:46025386-46025466 60 1.45e-05 CTATTTTGGA AAGGTTCC CTATTTCAGA chr8:126575900-126575980 56 1.45e-05 CCAGGAAACC AAGGTTCC CACCCAAGGT chr11:20088465-20088545 51 1.45e-05 GAGGGAAAGA AAGGTTCC TCCTGCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:63815385-63815465 1.4e-05 42_[+5]_30 chr2:208890262-208890342 1.4e-05 58_[+5]_14 chr6:99842049-99842129 1.4e-05 63_[+5]_9 chr11:46025386-46025466 1.4e-05 59_[+5]_13 chr8:126575900-126575980 1.4e-05 55_[+5]_17 chr11:20088465-20088545 1.4e-05 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGGTTCC width=8 seqs=6 chr2:63815385-63815465 ( 43) AAGGTTCC 1 chr2:208890262-208890342 ( 59) AAGGTTCC 1 chr6:99842049-99842129 ( 64) AAGGTTCC 1 chr11:46025386-46025466 ( 60) AAGGTTCC 1 chr8:126575900-126575980 ( 56) AAGGTTCC 1 chr11:20088465-20088545 ( 51) AAGGTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 1.4e+004 214 -923 -923 -923 214 -923 -923 -923 -923 -923 182 -923 -923 -923 182 -923 -923 -923 -923 220 -923 -923 -923 220 -923 187 -923 -923 -923 187 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGTTCC MEME-5 regular expression -------------------------------------------------------------------------------- AAGGTTCC -------------------------------------------------------------------------------- Time 18.82 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:20088465-20088545 1.87e-04 50_[+5(1.45e-05)]_22 chr8:132902945-132903025 3.56e-03 80 chr2:29978255-29978335 3.97e-02 80 chr1:208067696-208067776 3.02e-02 80 chr9:131644837-131644917 7.24e-03 80 chr19:3151123-3151203 2.57e-01 80 chr8:126575900-126575980 3.77e-05 55_[+5(1.45e-05)]_5_[+5(1.45e-05)]_\ 4 chr4:38607708-38607788 2.63e-01 80 chr3:193923573-193923653 8.44e-03 67_[+3(5.17e-05)]_5 chr5:173719493-173719573 1.52e-03 39_[+4(1.30e-05)]_33 chr17:2878814-2878894 1.40e-03 58_[+3(3.72e-05)]_14 chr11:46025386-46025466 2.99e-03 59_[+5(1.45e-05)]_13 chr8:125796890-125796970 1.02e-03 67_[+3(3.72e-05)]_5 chr5:42756856-42756936 3.76e-01 80 chr17:3466540-3466620 2.63e-01 80 chr1:244427634-244427714 7.14e-03 80 chr14:89017839-89017919 1.18e-01 80 chr22:38412578-38412658 3.75e-02 80 chr18:73967189-73967269 9.62e-02 80 chr11:74699630-74699710 1.30e-01 80 chr10:105440775-10544085 2.96e-03 12_[+1(5.56e-05)]_60 chr1:241987439-241987519 4.06e-01 80 chr1:177953448-177953528 1.12e-01 80 chr8:2129919-2129999 3.03e-01 80 chr12:108378897-10837897 1.26e-01 25_[+1(5.56e-05)]_47 chr20:39949807-39949887 1.41e-02 80 chr16:19165316-19165396 9.94e-02 80 chr12:71988199-71988279 7.74e-02 80 chr6:84712126-84712206 6.92e-02 80 chr19:54291244-54291324 1.16e-02 11_[+1(1.24e-05)]_61 chr6:6584230-6584310 1.08e-04 23_[+3(1.12e-05)]_49 chr14:101129309-10112938 2.93e-02 6_[+1(5.56e-05)]_66 chr4:135248646-135248726 3.96e-02 80 chr7:127761849-127761929 4.62e-01 80 chr3:139063304-139063384 8.55e-04 5_[+4(1.30e-05)]_67 chr10:70845971-70846051 4.35e-01 80 chr1:16127157-16127237 6.61e-01 80 chr2:171786937-171787017 8.66e-03 80 chr2:130201024-130201104 7.25e-04 16_[+2(1.30e-05)]_56 chr16:3162488-3162568 1.83e-02 70_[+2(1.30e-05)]_2 chr19:37157734-37157814 3.18e-01 80 chr18:43355221-43355301 1.30e-02 80 chr8:28748903-28748983 7.27e-03 40_[+3(5.17e-05)]_32 chr4:66107535-66107615 5.43e-01 80 chr14:37641222-37641302 1.75e-01 80 chr17:58156850-58156930 7.10e-02 80 chr1:39857905-39857985 3.77e-01 80 chr15:71184832-71184912 5.89e-01 80 chr14:105399775-10539985 3.84e-01 80 chr3:127279546-127279626 2.73e-04 [+2(1.30e-05)]_72 chr2:172779815-172779895 1.66e-01 80 chr11:60425459-60425539 9.78e-01 80 chr7:6749621-6749701 1.04e-02 80 chr6:30119483-30119563 2.37e-02 80 chrX:25057303-25057383 9.22e-02 80 chr14:69291634-69291714 9.08e-01 80 chr5:134452650-134452730 1.21e-02 6_[+1(5.56e-05)]_66 chr9:130218040-130218120 5.69e-03 35_[+2(1.30e-05)]_37 chr6:52258774-52258854 5.91e-01 80 chr8:33579811-33579891 8.78e-01 80 chr7:102533278-102533358 3.86e-03 41_[+2(1.30e-05)]_31 chr13:53191550-53191630 3.65e-01 80 chr19:39154977-39155057 1.93e-02 80 chr7:45189985-45190065 2.90e-02 80 chr1:94509814-94509894 2.53e-02 80 chr3:16276810-16276890 1.04e-04 2_[+3(9.80e-05)]_43_[+5(1.45e-05)]_\ 19 chr10:80305686-80305766 5.42e-04 23_[+2(1.30e-05)]_49 chr11:6947469-6947549 1.18e-02 80 chr14:90967274-90967354 2.28e-02 80 chr8:49959188-49959268 5.41e-02 80 chr10:135201820-13520190 1.69e-02 70_[+2(5.53e-05)]_2 chr14:39583332-39583412 1.77e-01 80 chr14:100704318-10070439 8.17e-02 80 chr1:47693500-47693580 2.50e-02 80 chr19:8617757-8617837 1.35e-02 40_[+3(1.12e-05)]_32 chr1:211780375-211780455 4.57e-01 80 chr22:47655906-47655986 1.40e-02 80 chr13:93031788-93031868 2.66e-03 9_[+4(2.93e-05)]_63 chr14:45604927-45605007 3.53e-01 80 chr14:99492988-99493068 3.09e-03 80 chr19:49262484-49262564 1.16e-01 37_[+3(8.45e-05)]_35 chr1:247372939-247373019 1.03e-01 80 chr12:3982217-3982297 3.39e-01 80 chr13:111521947-11152202 9.84e-03 80 chr5:132486748-132486828 3.08e-02 62_[+3(3.72e-05)]_10 chr1:48217022-48217102 3.45e-03 43_[+2(1.30e-05)]_29 chr18:21544365-21544445 7.88e-02 80 chr15:57179176-57179256 3.16e-03 45_[+4(1.30e-05)]_27 chr21:37546294-37546374 2.37e-02 7_[+3(6.57e-05)]_65 chr9:116413109-116413189 2.04e-02 80 chr19:37958420-37958500 1.06e-01 80 chr19:56152299-56152379 6.62e-03 80 chr16:72048150-72048230 4.06e-02 80 chr16:70666313-70666393 2.34e-03 20_[+1(5.56e-05)]_52 chr11:6846681-6846761 2.13e-03 80 chr5:140997805-140997885 8.06e-02 80 chr12:119941461-11994154 1.05e-03 46_[+5(1.45e-05)]_26 chr2:190627898-190627978 7.86e-02 80 chr4:111186315-111186395 8.44e-01 80 chrX:19003080-19003160 2.47e-01 80 chr13:41837652-41837732 4.15e-03 80 chr17:26898714-26898794 6.25e-03 67_[+4(2.93e-05)]_5 chr7:66460779-66460859 2.36e-01 80 chr6:147982016-147982096 2.63e-03 24_[+1(2.80e-05)]_48 chr1:27938134-27938214 2.55e-03 14_[+4(5.97e-05)]_58 chr11:46271189-46271269 7.55e-01 80 chr5:139555488-139555568 4.58e-02 80 chr1:207326296-207326376 3.45e-02 23_[+1(5.56e-05)]_49 chr19:17420905-17420985 1.18e-01 80 chr14:96087171-96087251 8.89e-03 80 chr9:98274344-98274424 1.35e-01 80 chr16:70465068-70465148 4.55e-02 80 chr3:132378989-132379069 1.49e-01 80 chr20:55776564-55776644 8.27e-02 80 chr9:140111781-140111861 2.30e-01 80 chr9:35812277-35812357 1.53e-02 80 chr16:89085199-89085279 4.03e-01 80 chr8:143254373-143254453 6.59e-01 80 chr19:44555789-44555869 5.81e-02 80 chr21:36089573-36089653 5.00e-02 80 chrX:48366832-48366912 2.49e-02 57_[+3(8.45e-05)]_15 chr13:42535249-42535329 1.44e-01 80 chr19:56092290-56092370 9.17e-02 80 chr19:37329222-37329302 1.75e-03 42_[+5(1.45e-05)]_30 chr10:124713710-12471379 1.01e-01 80 chrX:3061467-3061547 1.96e-03 38_[+3(9.80e-05)]_34 chr12:38710471-38710551 1.54e-01 80 chrX:3060765-3060845 2.78e-01 80 chr17:40169850-40169930 8.31e-02 80 chr2:232853002-232853082 5.18e-01 80 chr16:47753809-47753889 3.91e-01 80 chrX:119077747-119077827 8.36e-02 80 chr20:52104155-52104235 6.27e-03 80 chr17:42976400-42976480 5.12e-01 80 chr14:24702053-24702133 2.52e-02 80 chr19:55720410-55720490 2.77e-01 80 chr10:134778996-13477907 3.30e-02 32_[+2(5.53e-05)]_27_[+2(5.53e-05)]_\ 5 chr1:167121860-167121940 1.10e-01 80 chr17:31198905-31198985 1.44e-01 9_[+1(5.56e-05)]_63 chr14:103851529-10385160 6.44e-01 80 chr22:35470718-35470798 4.77e-04 19_[+2(1.30e-05)]_53 chr10:104180881-10418096 5.23e-01 80 chr14:76804054-76804134 2.49e-01 80 chr14:23030743-23030823 2.65e-01 80 chr14:61201397-61201477 4.25e-02 80 chr6:161865692-161865772 4.85e-02 80 chr20:40322112-40322192 3.54e-01 80 chr3:65605206-65605286 7.93e-03 32_[+4(1.30e-05)]_40 chr22:45705755-45705835 1.94e-01 80 chr13:42833866-42833946 3.43e-01 80 chr17:8060166-8060246 2.44e-02 80 chr1:19201788-19201868 2.72e-01 80 chr17:37844331-37844411 5.13e-04 7_[+2(5.53e-05)]_65 chr19:56165646-56165726 6.21e-02 80 chr22:20194090-20194170 5.70e-01 80 chr10:120937981-12093806 9.52e-01 80 chr5:169011011-169011091 2.82e-03 80 chr10:89879974-89880054 8.67e-01 80 chr8:30584796-30584876 5.04e-01 80 chr22:19749401-19749481 5.91e-01 80 chr2:16499788-16499868 6.90e-01 80 chr22:35415144-35415224 1.06e-01 80 chr2:30979140-30979220 2.72e-02 80 chr11:132934479-13293455 2.88e-02 80 chr7:72299780-72299860 2.43e-01 80 chr12:45342565-45342645 1.45e-05 19_[+3(6.57e-05)]_7_[+4(2.93e-05)]_\ 38 chr14:21342062-21342142 5.73e-04 4_[+3(8.45e-05)]_68 chr6:99842049-99842129 5.20e-03 63_[+5(1.45e-05)]_9 chr3:9199501-9199581 8.04e-04 36_[+3(2.56e-05)]_36 chr8:67578829-67578909 1.23e-01 80 chr20:55685689-55685769 2.51e-01 6_[+2(7.22e-05)]_66 chrX:53024640-53024720 2.29e-01 80 chr2:905945-906025 6.93e-02 80 chr19:48210618-48210698 8.17e-04 56_[+3(1.12e-05)]_16 chr6:138249146-138249226 1.40e-01 80 chr7:32697690-32697770 2.29e-01 80 chr1:36866735-36866815 9.06e-03 72_[+2(1.30e-05)] chr10:98346279-98346359 3.85e-04 58_[+5(1.45e-05)]_14 chr10:131076183-13107626 4.09e-02 80 chr1:203652004-203652084 8.16e-03 80 chr13:52768581-52768661 8.79e-02 80 chr11:2913886-2913966 1.47e-01 [+2(5.53e-05)]_72 chrX:71792872-71792952 6.62e-01 80 chr12:51327551-51327631 5.85e-01 80 chr12:6602509-6602589 1.81e-02 16_[+2(7.22e-05)]_56 chr13:20763482-20763562 2.95e-01 80 chr6:27247640-27247720 1.04e-02 80 chrX:131352181-131352261 2.83e-04 2_[+4(1.30e-05)]_46_[+2(7.22e-05)]_\ 16 chr17:31966562-31966642 1.07e-03 6_[+1(2.80e-05)]_46_[+3(2.56e-05)]_\ 12 chr9:35646572-35646652 4.21e-01 80 chr14:69658190-69658270 1.07e-02 80 chr5:148668149-148668229 6.63e-03 80 chr4:120221760-120221840 1.85e-01 80 chr1:19641978-19642058 3.00e-02 80 chr19:49362015-49362095 5.30e-01 80 chr4:103746977-103747057 4.31e-02 80 chr22:36877375-36877455 9.45e-02 5_[+1(1.24e-05)]_10_[+1(5.56e-05)]_\ 49 chr13:100150830-10015091 3.13e-01 80 chr19:52643143-52643223 2.77e-03 19_[+4(1.30e-05)]_53 chr19:48725009-48725089 5.92e-02 80 chr15:82554336-82554416 2.63e-01 80 chr10:104433924-10443400 7.28e-01 80 chr3:8594219-8594299 8.77e-01 80 chr11:125808411-12580849 1.47e-04 9_[+2(1.30e-05)]_12_[+4(5.97e-05)]_\ 43 chr9:140118155-140118235 1.98e-01 80 chr19:46119188-46119268 9.73e-01 80 chr5:7995969-7996049 4.94e-05 65_[+3(3.72e-05)]_7 chr9:129978725-129978805 2.96e-03 12_[+1(5.56e-05)]_41_[+3(2.56e-05)]_\ 11 chr3:121638102-121638182 3.60e-02 80 chr6:32160710-32160790 3.84e-02 80 chrX:49092073-49092153 2.19e-01 80 chr11:64009518-64009598 3.70e-01 80 chr18:372773-372853 5.82e-03 50_[+3(2.56e-05)]_22 chr6:27721919-27721999 2.92e-02 80 chr16:5566315-5566395 4.14e-03 3_[+2(1.30e-05)]_8_[+2(1.30e-05)]_\ 26_[+2(1.30e-05)]_19 chr4:1722971-1723051 5.41e-01 80 chr11:31391317-31391397 8.98e-03 80 chr6:33388962-33389042 3.39e-01 80 chr20:18547962-18548042 1.50e-02 80 chr11:1283865-1283945 4.53e-03 21_[+3(9.80e-05)]_51 chr19:19499532-19499612 3.02e-02 80 chr8:88886366-88886446 4.69e-02 80 chrX:108780005-108780085 2.82e-02 12_[+1(2.80e-05)]_60 chr13:41345332-41345412 1.70e-01 80 chr20:19997930-19998010 9.79e-02 80 chr19:49310030-49310110 2.81e-01 80 chr16:13774317-13774397 2.24e-03 28_[+3(1.12e-05)]_44 chr2:208890262-208890342 5.57e-04 58_[+5(1.45e-05)]_14 chr3:127872202-127872282 5.83e-03 80 chr7:7606343-7606423 3.11e-01 80 chr22:43539428-43539508 2.17e-04 46_[+5(1.45e-05)]_26 chr1:68614275-68614355 1.58e-02 80 chr13:115000253-11500033 7.83e-02 80 chr11:236567-236647 4.30e-01 80 chr9:140022127-140022207 1.33e-01 80 chr5:39266664-39266744 6.75e-03 80 chr12:123459217-12345929 2.13e-01 80 chr19:51963892-51963972 1.77e-01 80 chr19:17354817-17354897 2.45e-03 55_[+4(1.30e-05)]_17 chr8:41908401-41908481 2.28e-01 80 chr10:122610740-12261082 5.25e-01 80 chr11:46958170-46958250 6.01e-03 63_[+3(2.56e-05)]_9 chr2:63815385-63815465 2.77e-02 42_[+5(1.45e-05)]_30 chr22:31556060-31556140 8.72e-03 10_[+2(5.53e-05)]_42_[+2(7.22e-05)]_\ 12 chr2:73968066-73968146 4.33e-04 80 chr3:88198988-88199068 5.89e-03 80 chrX:40595008-40595088 4.34e-01 80 chr3:101395926-101396006 1.67e-01 80 chr15:55488848-55488928 2.93e-01 80 chr16:2771119-2771199 2.68e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************