******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/YBX3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:20816173-20816253 1.0000 80 chr1:204640230-204640310 1.0000 80 chr22:20915625-20915705 1.0000 80 chr11:62264316-62264396 1.0000 80 chr6:7391034-7391114 1.0000 80 chr6:37177708-37177788 1.0000 80 chr6:158786465-158786545 1.0000 80 chr22:21240694-21240774 1.0000 80 chr22:21377514-21377594 1.0000 80 chr1:38413040-38413120 1.0000 80 chr9:130913432-130913512 1.0000 80 chr16:85421578-85421658 1.0000 80 chr19:916257-916337 1.0000 80 chr7:135399794-135399874 1.0000 80 chr10:74263523-74263603 1.0000 80 chr22:19405801-19405881 1.0000 80 chr7:99841537-99841617 1.0000 80 chr22:22254881-22254961 1.0000 80 chr1:93645042-93645122 1.0000 80 chr9:75814579-75814659 1.0000 80 chr22:19089637-19089717 1.0000 80 chr6:8101900-8101980 1.0000 80 chr14:71067310-71067390 1.0000 80 chr7:95864868-95864948 1.0000 80 chr22:21811107-21811187 1.0000 80 chr5:85913254-85913334 1.0000 80 chr17:27193107-27193187 1.0000 80 chr8:56909140-56909220 1.0000 80 chr14:23938868-23938948 1.0000 80 chr22:23608152-23608232 1.0000 80 chr2:239197489-239197569 1.0000 80 chr6:26338179-26338259 1.0000 80 chr22:19815690-19815770 1.0000 80 chr14:68283250-68283330 1.0000 80 chr19:46219692-46219772 1.0000 80 chr7:158256208-158256288 1.0000 80 chr22:19768571-19768651 1.0000 80 chr1:197748162-197748242 1.0000 80 chr1:167901892-167901972 1.0000 80 chr1:26559933-26560013 1.0000 80 chr10:103543089-10354316 1.0000 80 chr17:36453210-36453290 1.0000 80 chr22:19981726-19981806 1.0000 80 chr20:18447973-18448053 1.0000 80 chr19:9695825-9695905 1.0000 80 chr10:75404421-75404501 1.0000 80 chr22:19940913-19940993 1.0000 80 chr1:179922494-179922574 1.0000 80 chr5:180707004-180707084 1.0000 80 chr12:107487535-10748761 1.0000 80 chr1:169636703-169636783 1.0000 80 chr12:66010039-66010119 1.0000 80 chr1:23881962-23882042 1.0000 80 chr3:122101901-122101981 1.0000 80 chr10:102027387-10202746 1.0000 80 chr8:74502183-74502263 1.0000 80 chr1:215742536-215742616 1.0000 80 chr16:29607650-29607730 1.0000 80 chr17:79499116-79499196 1.0000 80 chr7:150726518-150726598 1.0000 80 chr2:26986763-26986843 1.0000 80 chr7:99430403-99430483 1.0000 80 chr22:41777447-41777527 1.0000 80 chr6:147543010-147543090 1.0000 80 chr5:37554745-37554825 1.0000 80 chr6:1403087-1403167 1.0000 80 chr7:152611373-152611453 1.0000 80 chr1:205781149-205781229 1.0000 80 chr6:30509909-30509989 1.0000 80 chr6:166767168-166767248 1.0000 80 chr2:96607499-96607579 1.0000 80 chr22:22265802-22265882 1.0000 80 chr9:6015561-6015641 1.0000 80 chr7:2665686-2665766 1.0000 80 chr6:20529040-20529120 1.0000 80 chr5:180456642-180456722 1.0000 80 chr20:48551652-48551732 1.0000 80 chr1:151254587-151254667 1.0000 80 chr12:132024570-13202465 1.0000 80 chr1:44494429-44494509 1.0000 80 chr8:145159216-145159296 1.0000 80 chr4:82730227-82730307 1.0000 80 chr22:22617761-22617841 1.0000 80 chr5:10708449-10708529 1.0000 80 chr1:201547170-201547250 1.0000 80 chr2:91781134-91781214 1.0000 80 chr20:29650405-29650485 1.0000 80 chr19:49453886-49453966 1.0000 80 chr21:33652695-33652775 1.0000 80 chrX:49047620-49047700 1.0000 80 chr16:21514514-21514594 1.0000 80 chr16:5083884-5083964 1.0000 80 chr11:75112078-75112158 1.0000 80 chr17:73409299-73409379 1.0000 80 chr10:70996982-70997062 1.0000 80 chr11:2605700-2605780 1.0000 80 chr6:31653600-31653680 1.0000 80 chr1:241899170-241899250 1.0000 80 chr19:30829034-30829114 1.0000 80 chr10:62042260-62042340 1.0000 80 chr18:2867039-2867119 1.0000 80 chr22:22768629-22768709 1.0000 80 chr1:192954726-192954806 1.0000 80 chr17:74667896-74667976 1.0000 80 chr2:70365964-70366044 1.0000 80 chr1:142834608-142834688 1.0000 80 chr11:46269640-46269720 1.0000 80 chr2:70314944-70315024 1.0000 80 chr12:118499561-11849964 1.0000 80 chr20:2644796-2644876 1.0000 80 chr1:151735970-151736050 1.0000 80 chr13:91973406-91973486 1.0000 80 chr7:38373856-38373936 1.0000 80 chr3:195891605-195891685 1.0000 80 chr19:7894891-7894971 1.0000 80 chr6:16128735-16128815 1.0000 80 chr11:45868762-45868842 1.0000 80 chr3:12747826-12747906 1.0000 80 chr7:137859057-137859137 1.0000 80 chr11:119205350-11920543 1.0000 80 chr1:47797600-47797680 1.0000 80 chr6:43721665-43721745 1.0000 80 chr22:19992560-19992640 1.0000 80 chr19:14495553-14495633 1.0000 80 chr1:149860470-149860550 1.0000 80 chr12:76574860-76574940 1.0000 80 chr21:40286190-40286270 1.0000 80 chr18:9093841-9093921 1.0000 80 chr22:23624812-23624892 1.0000 80 chr11:59383423-59383503 1.0000 80 chr5:60240777-60240857 1.0000 80 chr22:20910931-20911011 1.0000 80 chr22:21293977-21294057 1.0000 80 chr2:232651094-232651174 1.0000 80 chr12:120107405-12010748 1.0000 80 chr14:55878467-55878547 1.0000 80 chr17:4870632-4870712 1.0000 80 chr22:20846325-20846405 1.0000 80 chr1:206926049-206926129 1.0000 80 chr10:73619423-73619503 1.0000 80 chr11:57163842-57163922 1.0000 80 chr14:23563555-23563635 1.0000 80 chr5:96265139-96265219 1.0000 80 chr11:63953466-63953546 1.0000 80 chr1:894528-894608 1.0000 80 chr17:40374077-40374157 1.0000 80 chr1:201612349-201612429 1.0000 80 chr17:26368569-26368649 1.0000 80 chr3:99667501-99667581 1.0000 80 chr19:47365731-47365811 1.0000 80 chr14:99947767-99947847 1.0000 80 chr7:139684543-139684623 1.0000 80 chr3:45167742-45167822 1.0000 80 chr6:28910989-28911069 1.0000 80 chr1:32538059-32538139 1.0000 80 chr7:100184113-100184193 1.0000 80 chr12:131365651-13136573 1.0000 80 chr17:17875922-17876002 1.0000 80 chr8:125700502-125700582 1.0000 80 chr19:45394335-45394415 1.0000 80 chr22:18359864-18359944 1.0000 80 chr17:8059830-8059910 1.0000 80 chr19:34012616-34012696 1.0000 80 chr7:47268557-47268637 1.0000 80 chr12:53773582-53773662 1.0000 80 chrX:54466809-54466889 1.0000 80 chr1:142818556-142818636 1.0000 80 chr17:61627657-61627737 1.0000 80 chr19:42773075-42773155 1.0000 80 chr1:174841237-174841317 1.0000 80 chr6:41733903-41733983 1.0000 80 chr19:18758330-18758410 1.0000 80 chr6:32146087-32146167 1.0000 80 chr19:14117205-14117285 1.0000 80 chr16:88086924-88087004 1.0000 80 chr10:114206878-11420695 1.0000 80 chr12:56367623-56367703 1.0000 80 chr16:84149555-84149635 1.0000 80 chr7:86668697-86668777 1.0000 80 chr6:17819699-17819779 1.0000 80 chr7:142585114-142585194 1.0000 80 chr22:19804072-19804152 1.0000 80 chr19:49016100-49016180 1.0000 80 chr10:22971934-22972014 1.0000 80 chr12:65073834-65073914 1.0000 80 chr1:182205949-182206029 1.0000 80 chr22:22367272-22367352 1.0000 80 chr11:20384828-20384908 1.0000 80 chr16:22206646-22206726 1.0000 80 chrX:19362009-19362089 1.0000 80 chr6:33396720-33396800 1.0000 80 chr7:55271939-55272019 1.0000 80 chr21:35318823-35318903 1.0000 80 chr6:137088501-137088581 1.0000 80 chr21:39488065-39488145 1.0000 80 chr8:146277856-146277936 1.0000 80 chr15:67333465-67333545 1.0000 80 chr11:47869806-47869886 1.0000 80 chr1:244530153-244530233 1.0000 80 chr17:38210610-38210690 1.0000 80 chr19:10828455-10828535 1.0000 80 chr22:22641857-22641937 1.0000 80 chr11:5310377-5310457 1.0000 80 chr1:8937755-8937835 1.0000 80 chr9:135674989-135675069 1.0000 80 chr19:6425170-6425250 1.0000 80 chr15:89631480-89631560 1.0000 80 chr9:138730236-138730316 1.0000 80 chr8:2587797-2587877 1.0000 80 chr22:20423490-20423570 1.0000 80 chr6:14891004-14891084 1.0000 80 chr1:234668007-234668087 1.0000 80 chr5:133892596-133892676 1.0000 80 chr16:74401175-74401255 1.0000 80 chr19:8626537-8626617 1.0000 80 chr16:70557304-70557384 1.0000 80 chr3:41643787-41643867 1.0000 80 chr11:62521647-62521727 1.0000 80 chr1:27995587-27995667 1.0000 80 chr9:130829742-130829822 1.0000 80 chr19:45943670-45943750 1.0000 80 chr17:73663394-73663474 1.0000 80 chr20:562020-562100 1.0000 80 chr7:135176165-135176245 1.0000 80 chr19:47748536-47748616 1.0000 80 chr22:19822316-19822396 1.0000 80 chr20:62478439-62478519 1.0000 80 chr4:107237502-107237582 1.0000 80 chr22:22445280-22445360 1.0000 80 chr19:12848264-12848344 1.0000 80 chr12:114404004-11440408 1.0000 80 chr4:152682099-152682179 1.0000 80 chr7:842657-842737 1.0000 80 chr2:27294025-27294105 1.0000 80 chr1:145080541-145080621 1.0000 80 chr15:75628329-75628409 1.0000 80 chr17:74543922-74544002 1.0000 80 chr17:57615777-57615857 1.0000 80 chr1:156627723-156627803 1.0000 80 chrX:108780008-108780088 1.0000 80 chr22:17015632-17015712 1.0000 80 chr2:200820370-200820450 1.0000 80 chr15:27333006-27333086 1.0000 80 chr9:139305151-139305231 1.0000 80 chr17:74214984-74215064 1.0000 80 chr17:33288541-33288621 1.0000 80 chr12:4647732-4647812 1.0000 80 chr1:211820077-211820157 1.0000 80 chr19:47930867-47930947 1.0000 80 chr16:33342900-33342980 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_YBX3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/YBX3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.266 C 0.239 G 0.245 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.266 C 0.239 G 0.245 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTCTTTYT MEME-1 width = 8 sites = 47 llr = 384 E-value = 5.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCTTTYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C ::61::51 probability G ::1:::1: matrix T aa29aa49 bits 2.1 * 1.9 * ** 1.7 ** ** * 1.4 ** *** * Relative 1.2 ** *** * Entropy 1.0 ** *** * (11.8 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTTTCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTTYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:211820077-211820157 72 1.39e-05 ttctttttct ttctttct t chr21:35318823-35318903 1 1.39e-05 . ttctttct ttttctttct chr1:201612349-201612429 11 1.39e-05 tcccttttct ttctttct ttccttcctt chr5:96265139-96265219 56 1.39e-05 cttccttcct ttctttct tcttgagacg chr1:206926049-206926129 3 1.39e-05 ct ttctttct ttcctccttt chr18:9093841-9093921 6 1.39e-05 tctct ttctttct ccttctctct chr12:76574860-76574940 63 1.39e-05 ccctttctct ttctttct cccttccttc chr17:73409299-73409379 3 1.39e-05 cc ttctttct tttttctttc chr6:166767168-166767248 23 1.39e-05 cttttcttcc ttctttct tccacacttt chr6:7391034-7391114 71 1.39e-05 aaaggaatca ttctttct ag chr1:174841237-174841317 24 2.85e-05 CCACTGGTTT TTCTTTTT TTAGTTTAAT chr3:45167742-45167822 21 2.85e-05 ctctctctgt ttctttTT TTTGTCTACC chr12:66010039-66010119 29 2.85e-05 ttcttttctt ttcttttt ccttccttcc chr5:85913254-85913334 32 2.85e-05 TTGTTCTTCC TTCTTTTT TATTCGATTC chr22:22254881-22254961 8 2.85e-05 gtataat ttcttttt gtctatcctg chr6:158786465-158786545 21 2.85e-05 AGtttttttt ttcttttt ttcttttttc chr19:8626537-8626617 54 4.31e-05 ccttcctcct ttttttct atcttttttt chr1:201547170-201547250 14 4.31e-05 ttttcaacta ttttttct tggagtactt chr7:150726518-150726598 46 4.31e-05 TGAttccttt ttttttct tttcttttct chr11:5310377-5310457 40 5.84e-05 aatttttttt tttttttt aagtagagac chr6:16128735-16128815 1 5.84e-05 . tttttttt gtatttttag chr22:22768629-22768709 11 5.84e-05 tcttttgtat tttttttt gttttgactt chr19:45943670-45943750 68 7.27e-05 ATTTCTTGGT TTGTTTCT ACTGT chr19:14495553-14495633 19 7.27e-05 tatgggcccc ttgtttct ctctccacct chr20:29650405-29650485 6 8.82e-05 tggct ttatttct gtgttctcta chr6:28910989-28911069 11 1.03e-04 GTTGGTTCGT TTGTTTTT TCAGCCTTAG chr10:70996982-70997062 7 1.03e-04 TTATTC TTGTTTTT GAGGGAACAG chr20:48551652-48551732 25 1.03e-04 gttgttgttg ttgttttt tgagagggag chr22:19768571-19768651 39 1.03e-04 cggccctgtt ttgttttt atttttggtg chr17:57615777-57615857 1 1.33e-04 . ttccttct tccttcttct chr10:22971934-22972014 4 1.33e-04 TCT TTATTTTT GCGTAGCTGA chr1:142834608-142834688 60 1.33e-04 gcgtatgttt ttattttt ctggagtata chr7:2665686-2665766 9 1.33e-04 tttatttt ttattttt gagacggagt chr8:56909140-56909220 35 1.33e-04 tccttgttcc ttccttct ttccttgctt chr6:8101900-8101980 15 1.33e-04 TACAACCAAT TTCCTTCT CTAATACATT chr6:32146087-32146167 47 1.47e-04 TTCTTTTGAA TTCTTTGT GACTGGCAGG chr12:65073834-65073914 40 1.61e-04 TTTTCTTCTC TTCCTTTT TCCTGGGCAT chr22:20846325-20846405 50 1.74e-04 GAGCCCATCC TTCTTTCC CAGTGGTTCA chrX:49047620-49047700 72 1.88e-04 AGCACCATTC TTCTTTTC T chr2:200820370-200820450 66 2.02e-04 GCTCTCCAGT CTCTTTCT CCGACAC chr10:73619423-73619503 22 2.02e-04 tattccctgc ctctttct ctggtaaact chr1:142818556-142818636 73 2.30e-04 acctgtctaa ttttttgt chr11:75112078-75112158 16 2.30e-04 accttgctaa ttttttgt gtttttagta chr6:147543010-147543090 67 3.01e-04 tctgttctgt ttttttcc agtttt chr16:84149555-84149635 17 3.43e-04 ATGAGAGGAA TTACTTCT CTTCTGCAAG chr2:91781134-91781214 24 3.43e-04 TGTTTTTTTG TTCTTCCT CTCTCTCTGC chr14:71067310-71067390 66 4.45e-04 CGTTTACAGG TTCTCTTT CCGGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTTYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:211820077-211820157 1.4e-05 71_[+1]_1 chr21:35318823-35318903 1.4e-05 [+1]_72 chr1:201612349-201612429 1.4e-05 10_[+1]_62 chr5:96265139-96265219 1.4e-05 55_[+1]_17 chr1:206926049-206926129 1.4e-05 2_[+1]_70 chr18:9093841-9093921 1.4e-05 5_[+1]_67 chr12:76574860-76574940 1.4e-05 62_[+1]_10 chr17:73409299-73409379 1.4e-05 2_[+1]_70 chr6:166767168-166767248 1.4e-05 22_[+1]_50 chr6:7391034-7391114 1.4e-05 70_[+1]_2 chr1:174841237-174841317 2.9e-05 23_[+1]_49 chr3:45167742-45167822 2.9e-05 20_[+1]_52 chr12:66010039-66010119 2.9e-05 28_[+1]_44 chr5:85913254-85913334 2.9e-05 31_[+1]_41 chr22:22254881-22254961 2.9e-05 7_[+1]_65 chr6:158786465-158786545 2.9e-05 20_[+1]_52 chr19:8626537-8626617 4.3e-05 53_[+1]_19 chr1:201547170-201547250 4.3e-05 13_[+1]_59 chr7:150726518-150726598 4.3e-05 45_[+1]_27 chr11:5310377-5310457 5.8e-05 39_[+1]_33 chr6:16128735-16128815 5.8e-05 [+1]_72 chr22:22768629-22768709 5.8e-05 10_[+1]_62 chr19:45943670-45943750 7.3e-05 67_[+1]_5 chr19:14495553-14495633 7.3e-05 18_[+1]_54 chr20:29650405-29650485 8.8e-05 5_[+1]_67 chr6:28910989-28911069 0.0001 10_[+1]_62 chr10:70996982-70997062 0.0001 6_[+1]_66 chr20:48551652-48551732 0.0001 24_[+1]_48 chr22:19768571-19768651 0.0001 38_[+1]_34 chr17:57615777-57615857 0.00013 [+1]_72 chr10:22971934-22972014 0.00013 3_[+1]_69 chr1:142834608-142834688 0.00013 59_[+1]_13 chr7:2665686-2665766 0.00013 8_[+1]_64 chr8:56909140-56909220 0.00013 34_[+1]_38 chr6:8101900-8101980 0.00013 14_[+1]_58 chr6:32146087-32146167 0.00015 46_[+1]_26 chr12:65073834-65073914 0.00016 39_[+1]_33 chr22:20846325-20846405 0.00017 49_[+1]_23 chrX:49047620-49047700 0.00019 71_[+1]_1 chr2:200820370-200820450 0.0002 65_[+1]_7 chr10:73619423-73619503 0.0002 21_[+1]_51 chr1:142818556-142818636 0.00023 72_[+1] chr11:75112078-75112158 0.00023 15_[+1]_57 chr6:147543010-147543090 0.0003 66_[+1]_6 chr16:84149555-84149635 0.00034 16_[+1]_56 chr2:91781134-91781214 0.00034 23_[+1]_49 chr14:71067310-71067390 0.00044 65_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTTYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCTTTYT width=8 seqs=47 chr1:211820077-211820157 ( 72) TTCTTTCT 1 chr21:35318823-35318903 ( 1) TTCTTTCT 1 chr1:201612349-201612429 ( 11) TTCTTTCT 1 chr5:96265139-96265219 ( 56) TTCTTTCT 1 chr1:206926049-206926129 ( 3) TTCTTTCT 1 chr18:9093841-9093921 ( 6) TTCTTTCT 1 chr12:76574860-76574940 ( 63) TTCTTTCT 1 chr17:73409299-73409379 ( 3) TTCTTTCT 1 chr6:166767168-166767248 ( 23) TTCTTTCT 1 chr6:7391034-7391114 ( 71) TTCTTTCT 1 chr1:174841237-174841317 ( 24) TTCTTTTT 1 chr3:45167742-45167822 ( 21) TTCTTTTT 1 chr12:66010039-66010119 ( 29) TTCTTTTT 1 chr5:85913254-85913334 ( 32) TTCTTTTT 1 chr22:22254881-22254961 ( 8) TTCTTTTT 1 chr6:158786465-158786545 ( 21) TTCTTTTT 1 chr19:8626537-8626617 ( 54) TTTTTTCT 1 chr1:201547170-201547250 ( 14) TTTTTTCT 1 chr7:150726518-150726598 ( 46) TTTTTTCT 1 chr11:5310377-5310457 ( 40) TTTTTTTT 1 chr6:16128735-16128815 ( 1) TTTTTTTT 1 chr22:22768629-22768709 ( 11) TTTTTTTT 1 chr19:45943670-45943750 ( 68) TTGTTTCT 1 chr19:14495553-14495633 ( 19) TTGTTTCT 1 chr20:29650405-29650485 ( 6) TTATTTCT 1 chr6:28910989-28911069 ( 11) TTGTTTTT 1 chr10:70996982-70997062 ( 7) TTGTTTTT 1 chr20:48551652-48551732 ( 25) TTGTTTTT 1 chr22:19768571-19768651 ( 39) TTGTTTTT 1 chr17:57615777-57615857 ( 1) TTCCTTCT 1 chr10:22971934-22972014 ( 4) TTATTTTT 1 chr1:142834608-142834688 ( 60) TTATTTTT 1 chr7:2665686-2665766 ( 9) TTATTTTT 1 chr8:56909140-56909220 ( 35) TTCCTTCT 1 chr6:8101900-8101980 ( 15) TTCCTTCT 1 chr6:32146087-32146167 ( 47) TTCTTTGT 1 chr12:65073834-65073914 ( 40) TTCCTTTT 1 chr22:20846325-20846405 ( 50) TTCTTTCC 1 chrX:49047620-49047700 ( 72) TTCTTTTC 1 chr2:200820370-200820450 ( 66) CTCTTTCT 1 chr10:73619423-73619503 ( 22) CTCTTTCT 1 chr1:142818556-142818636 ( 73) TTTTTTGT 1 chr11:75112078-75112158 ( 16) TTTTTTGT 1 chr6:147543010-147543090 ( 67) TTTTTTCC 1 chr16:84149555-84149635 ( 17) TTACTTCT 1 chr2:91781134-91781214 ( 24) TTCTTCCT 1 chr14:71067310-71067390 ( 66) TTCTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTTYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 5.1e-011 -1220 -249 -1220 194 -1220 -1220 -1220 200 -132 127 -94 -39 -1220 -117 -1220 184 -1220 -349 -1220 197 -1220 -349 -1220 197 -1220 116 -194 69 -1220 -190 -1220 190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTTYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 5.1e-011 0.000000 0.042553 0.000000 0.957447 0.000000 0.000000 0.000000 1.000000 0.106383 0.574468 0.127660 0.191489 0.000000 0.106383 0.000000 0.893617 0.000000 0.021277 0.000000 0.978723 0.000000 0.021277 0.000000 0.978723 0.000000 0.531915 0.063830 0.404255 0.000000 0.063830 0.000000 0.936170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTTTYT MEME-1 regular expression -------------------------------------------------------------------------------- TTCTTT[CT]T -------------------------------------------------------------------------------- Time 5.04 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTTCCTC MEME-2 width = 8 sites = 31 llr = 268 E-value = 8.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTTCCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C aa::9917 probability G :::3:::: matrix T ::971193 bits 2.1 ** 1.9 ** 1.7 ** ** 1.4 *** *** Relative 1.2 *** **** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTCCTC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:8626537-8626617 44 1.22e-05 ttccttcctt ccttcctc ctttttttct chr19:10828455-10828535 54 1.22e-05 GGAAACACCC CCTTCCTC TCTTGACAAC chr7:47268557-47268637 23 1.22e-05 tccagtcctg ccttcctc cTCCTCTGAT chr1:201612349-201612429 25 1.22e-05 ttctttcctt ccttcctc cctccttcct chr12:76574860-76574940 20 1.22e-05 ttccttcttt ccttcctc tctttctctc chr1:211820077-211820157 55 2.49e-05 ttcctttctt ccttcctt tctttttctt chr21:35318823-35318903 41 2.49e-05 ttccttcctt ccttcctt ccttcctttc chr5:96265139-96265219 45 2.49e-05 tttttttctt ccttcctt cctttctttc chr1:206926049-206926129 59 2.49e-05 ctccttcctt ccttcctt tttctttctt chr6:166767168-166767248 72 2.49e-05 ctcctttctt ccttcctt c chr12:66010039-66010119 58 2.49e-05 tcccttttct ccttcctt ccttctcttc chr8:56909140-56909220 13 2.49e-05 ttgtttcctt ccttcctt catttccttg chr14:23563555-23563635 22 3.69e-05 TATATATCAA CCTGCCTC GCCTCTCTCA chr1:215742536-215742616 38 3.69e-05 aagcgattct cctgcctc agcatcccga chr1:179922494-179922574 24 3.69e-05 aagcgatact cctgcctc cgcctcccga chr22:19940913-19940993 13 3.69e-05 aagcgattct cctgcctc agcctcccga chr6:26338179-26338259 40 3.69e-05 aagcaattct cctgcctc agcctactga chr1:156627723-156627803 52 6.10e-05 tctcctttcc ccttcccC GGGAGATCCC chr11:57163842-57163922 20 6.10e-05 CCATCTTCTA CCTTCCCC AGTCCGTCTA chr11:62521647-62521727 62 7.40e-05 TCTCCACTAA CCATCCTC CCTCTAACTG chr1:201547170-201547250 40 7.40e-05 tttttcagca ccatcctc tttcttttct chr22:19768571-19768651 60 7.40e-05 tttggtgtac ccatcctc atgggtgtaa chr7:158256208-158256288 36 7.40e-05 attgttatca ccatcctc attgtcatca chr17:57615777-57615857 10 1.12e-04 ttccttctt ccttcttc ttcttcttcc chr10:103543089-10354316 69 1.12e-04 GCTGTAAGAG CCTTCTTC AAAC chr19:47365731-47365811 72 1.37e-04 ATCTCACAGA CCTGCCCC T chr6:32146087-32146167 34 1.74e-04 TTGGGCCAAT CCTTTCTT TTGAATTCTT chr17:73409299-73409379 24 1.74e-04 ttctttcttt cctttctt tttcctttca chrX:49047620-49047700 25 1.74e-04 TGCCCTTCTA CCTCCCTC CCATTGGCTC chr22:22265802-22265882 40 1.87e-04 acagtgaaac cctgtctc tactaaaaat chr5:85913254-85913334 14 2.25e-04 TTGAGTTTTC CCTGCCCT TTGTTCTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:8626537-8626617 1.2e-05 43_[+2]_29 chr19:10828455-10828535 1.2e-05 53_[+2]_19 chr7:47268557-47268637 1.2e-05 22_[+2]_50 chr1:201612349-201612429 1.2e-05 24_[+2]_48 chr12:76574860-76574940 1.2e-05 19_[+2]_53 chr1:211820077-211820157 2.5e-05 54_[+2]_18 chr21:35318823-35318903 2.5e-05 40_[+2]_32 chr5:96265139-96265219 2.5e-05 44_[+2]_28 chr1:206926049-206926129 2.5e-05 58_[+2]_14 chr6:166767168-166767248 2.5e-05 71_[+2]_1 chr12:66010039-66010119 2.5e-05 57_[+2]_15 chr8:56909140-56909220 2.5e-05 12_[+2]_60 chr14:23563555-23563635 3.7e-05 21_[+2]_51 chr1:215742536-215742616 3.7e-05 37_[+2]_35 chr1:179922494-179922574 3.7e-05 23_[+2]_49 chr22:19940913-19940993 3.7e-05 12_[+2]_60 chr6:26338179-26338259 3.7e-05 39_[+2]_33 chr1:156627723-156627803 6.1e-05 51_[+2]_21 chr11:57163842-57163922 6.1e-05 19_[+2]_53 chr11:62521647-62521727 7.4e-05 61_[+2]_11 chr1:201547170-201547250 7.4e-05 39_[+2]_33 chr22:19768571-19768651 7.4e-05 59_[+2]_13 chr7:158256208-158256288 7.4e-05 35_[+2]_37 chr17:57615777-57615857 0.00011 9_[+2]_63 chr10:103543089-10354316 0.00011 68_[+2]_4 chr19:47365731-47365811 0.00014 71_[+2]_1 chr6:32146087-32146167 0.00017 33_[+2]_39 chr17:73409299-73409379 0.00017 23_[+2]_49 chrX:49047620-49047700 0.00017 24_[+2]_48 chr22:22265802-22265882 0.00019 39_[+2]_33 chr5:85913254-85913334 0.00022 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTTCCTC width=8 seqs=31 chr19:8626537-8626617 ( 44) CCTTCCTC 1 chr19:10828455-10828535 ( 54) CCTTCCTC 1 chr7:47268557-47268637 ( 23) CCTTCCTC 1 chr1:201612349-201612429 ( 25) CCTTCCTC 1 chr12:76574860-76574940 ( 20) CCTTCCTC 1 chr1:211820077-211820157 ( 55) CCTTCCTT 1 chr21:35318823-35318903 ( 41) CCTTCCTT 1 chr5:96265139-96265219 ( 45) CCTTCCTT 1 chr1:206926049-206926129 ( 59) CCTTCCTT 1 chr6:166767168-166767248 ( 72) CCTTCCTT 1 chr12:66010039-66010119 ( 58) CCTTCCTT 1 chr8:56909140-56909220 ( 13) CCTTCCTT 1 chr14:23563555-23563635 ( 22) CCTGCCTC 1 chr1:215742536-215742616 ( 38) CCTGCCTC 1 chr1:179922494-179922574 ( 24) CCTGCCTC 1 chr22:19940913-19940993 ( 13) CCTGCCTC 1 chr6:26338179-26338259 ( 40) CCTGCCTC 1 chr1:156627723-156627803 ( 52) CCTTCCCC 1 chr11:57163842-57163922 ( 20) CCTTCCCC 1 chr11:62521647-62521727 ( 62) CCATCCTC 1 chr1:201547170-201547250 ( 40) CCATCCTC 1 chr22:19768571-19768651 ( 60) CCATCCTC 1 chr7:158256208-158256288 ( 36) CCATCCTC 1 chr17:57615777-57615857 ( 10) CCTTCTTC 1 chr10:103543089-10354316 ( 69) CCTTCTTC 1 chr19:47365731-47365811 ( 72) CCTGCCCC 1 chr6:32146087-32146167 ( 34) CCTTTCTT 1 chr17:73409299-73409379 ( 24) CCTTTCTT 1 chrX:49047620-49047700 ( 25) CCTCCCTC 1 chr22:22265802-22265882 ( 40) CCTGTCTC 1 chr5:85913254-85913334 ( 14) CCTGCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 8.2e-004 -1160 207 -1160 -1160 -1160 207 -1160 -1160 -104 -1160 -1160 180 -1160 -288 7 150 -1160 192 -1160 -137 -1160 197 -1160 -195 -1160 -89 -1160 180 -1160 150 -1160 37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 8.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.129032 0.000000 0.000000 0.870968 0.000000 0.032258 0.258065 0.709677 0.000000 0.903226 0.000000 0.096774 0.000000 0.935484 0.000000 0.064516 0.000000 0.129032 0.000000 0.870968 0.000000 0.677419 0.000000 0.322581 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCTC MEME-2 regular expression -------------------------------------------------------------------------------- CCT[TG]CCT[CT] -------------------------------------------------------------------------------- Time 8.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCTTTY MEME-3 width = 8 sites = 27 llr = 244 E-value = 7.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTTTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C :::a1:34 probability G :::::::: matrix T aaa:7a76 bits 2.1 **** * 1.9 **** * 1.7 **** * 1.4 **** * Relative 1.2 **** ** Entropy 1.0 **** *** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTTTT consensus A CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:174841237-174841317 55 1.46e-05 AGGTTTTTTT TTTCTTTT TTTGAACAAT chr5:96265139-96265219 12 1.46e-05 ccctccctct tttctttt ccttccttcc chr22:22768629-22768709 61 1.46e-05 cattatttct tttctttt cctgggtttg chr17:73409299-73409379 43 1.46e-05 ttcctttcat tttctttt tttctctttc chr1:201547170-201547250 48 1.46e-05 caccatcctc tttctttt ctcttaccag chr7:150726518-150726598 64 1.46e-05 tttcttttct tttctttt cttttcttt chr12:66010039-66010119 8 1.46e-05 ctttcct tttctttt cctttctttt chr6:158786465-158786545 35 1.46e-05 ttttttcttt tttctttt ttcttttttt chr1:211820077-211820157 29 2.85e-05 tccttctttc tttctttc tttctttctt chr19:8626537-8626617 1 2.85e-05 . tttctttc cttctttcct chr21:35318823-35318903 14 2.85e-05 tttctttttc tttctttc tttctttctt chr1:201612349-201612429 59 2.85e-05 cctctctttc tttctttc ttcccttcct chr1:206926049-206926129 22 2.85e-05 tcctcctttc tttctttc ttcttctttc chr18:9093841-9093921 36 2.85e-05 cgtttccagc tttctttc AGTACATATA chr12:65073834-65073914 31 4.25e-05 TGGGTTTCGT TTTCTTCT CTTCCTTTTT chr6:166767168-166767248 7 4.25e-05 catctt tttcttct tttcttcctt chr16:33342900-33342980 55 5.80e-05 tatctcacca tttcattt catctcatct chr1:197748162-197748242 48 5.80e-05 tcttttgtat tttcattt tagatcttct chr17:57615777-57615857 53 7.13e-05 tcttcccctt tttcttcc ccttctcctc chr8:56909140-56909220 55 7.13e-05 ccttgcttgc tttcttcc atccttcctt chr20:562020-562100 58 8.62e-05 ccatccatta tttcattc atCATTTATG chr10:114206878-11420695 8 1.00e-04 GGGCGCT TTTCCTTT GCGAACTTAC chr22:22641857-22641937 5 1.15e-04 atca tttcatct cgtttcatct chr6:31653600-31653680 23 1.15e-04 CTTTGGGGTC TTTCATCT GGAAAAGAGA chr12:76574860-76574940 9 1.28e-04 cttcattc tttccttc tttccttcct chr22:20846325-20846405 18 1.42e-04 GACCTCTCTC TTTCATCC CACACACCCT chr1:241899170-241899250 51 1.56e-04 CAATCTACAC TTTCCTCT ACCTGGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:174841237-174841317 1.5e-05 54_[+3]_18 chr5:96265139-96265219 1.5e-05 11_[+3]_61 chr22:22768629-22768709 1.5e-05 60_[+3]_12 chr17:73409299-73409379 1.5e-05 42_[+3]_30 chr1:201547170-201547250 1.5e-05 47_[+3]_25 chr7:150726518-150726598 1.5e-05 63_[+3]_9 chr12:66010039-66010119 1.5e-05 7_[+3]_65 chr6:158786465-158786545 1.5e-05 34_[+3]_38 chr1:211820077-211820157 2.9e-05 28_[+3]_44 chr19:8626537-8626617 2.9e-05 [+3]_72 chr21:35318823-35318903 2.9e-05 13_[+3]_59 chr1:201612349-201612429 2.9e-05 58_[+3]_14 chr1:206926049-206926129 2.9e-05 21_[+3]_51 chr18:9093841-9093921 2.9e-05 35_[+3]_37 chr12:65073834-65073914 4.2e-05 30_[+3]_42 chr6:166767168-166767248 4.2e-05 6_[+3]_66 chr16:33342900-33342980 5.8e-05 54_[+3]_18 chr1:197748162-197748242 5.8e-05 47_[+3]_25 chr17:57615777-57615857 7.1e-05 52_[+3]_20 chr8:56909140-56909220 7.1e-05 54_[+3]_18 chr20:562020-562100 8.6e-05 57_[+3]_15 chr10:114206878-11420695 0.0001 7_[+3]_65 chr22:22641857-22641937 0.00011 4_[+3]_68 chr6:31653600-31653680 0.00011 22_[+3]_50 chr12:76574860-76574940 0.00013 8_[+3]_64 chr22:20846325-20846405 0.00014 17_[+3]_55 chr1:241899170-241899250 0.00016 50_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTTTY width=8 seqs=27 chr1:174841237-174841317 ( 55) TTTCTTTT 1 chr5:96265139-96265219 ( 12) TTTCTTTT 1 chr22:22768629-22768709 ( 61) TTTCTTTT 1 chr17:73409299-73409379 ( 43) TTTCTTTT 1 chr1:201547170-201547250 ( 48) TTTCTTTT 1 chr7:150726518-150726598 ( 64) TTTCTTTT 1 chr12:66010039-66010119 ( 8) TTTCTTTT 1 chr6:158786465-158786545 ( 35) TTTCTTTT 1 chr1:211820077-211820157 ( 29) TTTCTTTC 1 chr19:8626537-8626617 ( 1) TTTCTTTC 1 chr21:35318823-35318903 ( 14) TTTCTTTC 1 chr1:201612349-201612429 ( 59) TTTCTTTC 1 chr1:206926049-206926129 ( 22) TTTCTTTC 1 chr18:9093841-9093921 ( 36) TTTCTTTC 1 chr12:65073834-65073914 ( 31) TTTCTTCT 1 chr6:166767168-166767248 ( 7) TTTCTTCT 1 chr16:33342900-33342980 ( 55) TTTCATTT 1 chr1:197748162-197748242 ( 48) TTTCATTT 1 chr17:57615777-57615857 ( 53) TTTCTTCC 1 chr8:56909140-56909220 ( 55) TTTCTTCC 1 chr20:562020-562100 ( 58) TTTCATTC 1 chr10:114206878-11420695 ( 8) TTTCCTTT 1 chr22:22641857-22641937 ( 5) TTTCATCT 1 chr6:31653600-31653680 ( 23) TTTCATCT 1 chr12:76574860-76574940 ( 9) TTTCCTTC 1 chr22:20846325-20846405 ( 18) TTTCATCC 1 chr1:241899170-241899250 ( 51) TTTCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 7.1e-004 -1140 -1140 -1140 200 -1140 -1140 -1140 200 -1140 -1140 -1140 200 -1140 207 -1140 -1140 -26 -110 -1140 141 -1140 -1140 -1140 200 -1140 31 -1140 149 -1140 77 -1140 124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 7.1e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.111111 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.296296 0.000000 0.703704 0.000000 0.407407 0.000000 0.592593 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTY MEME-3 regular expression -------------------------------------------------------------------------------- TTTC[TA]T[TC][TC] -------------------------------------------------------------------------------- Time 12.55 secs. ******************************************************************************** ******************************************************************************** MOTIF VAMASAAA MEME-4 width = 8 sites = 65 llr = 468 E-value = 1.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAMASAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3a69:a7a pos.-specific C 3:4:4:3: probability G 4:116::: matrix T :::::::: bits 2.1 1.9 * * * 1.7 * * * 1.4 * * * * Relative 1.2 * * * * Entropy 1.0 * ***** (10.4 bits) 0.8 * ***** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAGAAA consensus C C C C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAMASAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:842657-842737 63 2.13e-05 aggaaagaga gaaagaaa gagaaaaaaa chr1:244530153-244530233 41 2.13e-05 aaaaaagaaa gaaagaaa aaCTaaacag chr15:67333465-67333545 4 2.13e-05 aaa gaaagaaa aagggagaag chr6:41733903-41733983 18 2.13e-05 aagaaagaaa gaaagaaa gaaagagaga chr7:139684543-139684623 32 2.13e-05 aggaaagaaa gaaagaaa agaaagaaag chr7:137859057-137859137 39 2.13e-05 gaaagaaaga gaaagaaa agaaacaaag chr13:91973406-91973486 5 2.13e-05 aaaa gaaagaaa gaaagaaagg chr1:192954726-192954806 6 2.13e-05 gttat gaaagaaa aagaaaaaag chr1:44494429-44494509 38 2.13e-05 gagagagaaa gaaagaaa ggaaggaagg chr1:169636703-169636783 62 2.13e-05 gaaacagaga gaaagaaa gagacaggaa chr11:62264316-62264396 49 2.13e-05 aggaaggaag gaaagaaa gaaagaaaAG chr17:74214984-74215064 61 4.20e-05 aaaataaaaa CAAAGAAA ATACAGTACA chr6:30509909-30509989 57 4.20e-05 tccacctctc caaagaaa tgctcccacc chr15:75628329-75628409 68 8.42e-05 CGGGACCGGA AAAAGAAA TTCCC chr6:33396720-33396800 14 8.42e-05 AGTAAGTGGG GACAGAAA AGCTTAAaaa chr10:22971934-22972014 44 8.42e-05 AGCCAAAAAG AAAAGAAA AAGAAAaaca chr3:45167742-45167822 47 8.42e-05 CCCTGGAGGT GACAGAAA CTGCCATTCT chr2:232651094-232651174 47 8.42e-05 GGTCGGCGGA GACAGAAA AGCGCCGGAC chr9:75814579-75814659 2 8.42e-05 g aaaagaaa aaggcaggaa chr8:2587797-2587877 35 1.44e-04 CAGAAAATTA GAAACAAA AGATGTTTag chr10:70996982-70997062 20 1.44e-04 TTTTTGAGGG AACAGAAA GTCTTAACCA chr5:180456642-180456722 2 1.44e-04 t gaaacaaa ggcttagttt chr22:19815690-19815770 70 1.44e-04 atatggggca aacagaaa caa chr22:22367272-22367352 14 1.65e-04 caaaccaaaa caaacaaa aCCCCccgaa chr1:47797600-47797680 15 1.65e-04 aaaagaaggg caaacaaa ggcaagtagg chr22:22445280-22445360 8 2.25e-04 aacgaac aaaaCAAA CCAAAAAAGC chr6:14891004-14891084 70 2.25e-04 tccatctcaa aaaacaaa aca chr1:8937755-8937835 21 2.25e-04 caacaaaaaa aaaacaaa attagccggg chr4:82730227-82730307 45 2.25e-04 TATTAAATCa aaaacaaa ggaagaaagg chr2:96607499-96607579 38 2.25e-04 AGGTCACCCT GAAAGACA TATATAGATA chr22:19089637-19089717 41 2.25e-04 aaagaagaca gacacaaa agaggcaaat chr7:99841537-99841617 4 2.25e-04 AAA AAAACAAA AACACCTggc chr7:135176165-135176245 45 2.62e-04 acaagtatat caaagaca aggagaaaat chr5:133892596-133892676 67 2.62e-04 cctcacacat cacacaaa acacac chr1:182205949-182206029 64 2.62e-04 atacacacca cacacaaa cacagagag chr7:86668697-86668777 60 2.62e-04 caaaaccaga caaagaca cataataaaa chr21:40286190-40286270 62 2.62e-04 ctgcacacac cacacaaa cacattacac chr8:145159216-145159296 44 3.20e-04 CGAGAAGAGT GACAGACA GGCTCCATAA chr6:8101900-8101980 56 3.20e-04 ACAACTATAA AACACAAA CGTTCTAACA chr17:74543922-74544002 10 3.37e-04 tcacacaca cacagaca tacacatata chr19:49016100-49016180 47 3.37e-04 catacataag cacagaca taggcacaca chr5:10708449-10708529 36 3.37e-04 tacacacatg cacagaca tacatacaca chr6:1403087-1403167 5 3.37e-04 cact cacagaca cacacataca chr1:145080541-145080621 66 3.74e-04 cagcatgggc aacagaca gagactc chr3:99667501-99667581 39 4.12e-04 ggagaaagga gagagaaa gggagaggaa chr16:21514514-21514594 1 4.12e-04 . gagagaaa GCagggaggg chr1:234668007-234668087 33 4.87e-04 caatgaggca cagagaaa caggcagaga chr9:138730236-138730316 8 4.87e-04 TTCTACA GACACACA TCATCACGCA chr16:29607650-29607730 44 4.87e-04 agggaggaag gaaggaaa ggagggagga chr17:27193107-27193187 18 4.87e-04 cataatatgc aaaacaca cacatacaaa chr9:135674989-135675069 4 5.23e-04 aca cacacaca ccacacaccc chr7:55271939-55272019 15 5.23e-04 atacacacca cacacaca ccacacatac chr22:19804072-19804152 67 5.23e-04 aacacacaat cacacaca ccacac chr10:62042260-62042340 5 5.23e-04 attg cacacaca cacacacacc chr8:74502183-74502263 6 5.23e-04 gaaga caaggaaa aggagaaggg chr22:19822316-19822396 19 5.44e-04 agagaagaaa aagagaaa acaacaaaat chr17:33288541-33288621 8 6.01e-04 CTCGCCC GACGGAAA CCAGAATCGT chr3:41643787-41643867 57 6.01e-04 aagggaaagg aaaggaaa ggaggaaggg chr7:38373856-38373936 4 6.01e-04 aag aaaggaaa aaaagaagga chr2:27294025-27294105 32 6.94e-04 CTACTCTGTG CAGACAAA GGGGCCCAGT chr12:107487535-10748761 45 6.94e-04 CCGTCCCTTG GAAGCAAA TCGCGTTGAC chr1:93645042-93645122 9 6.94e-04 ATAACTTA AACGGAAA TGTATCATTA chr19:45394335-45394415 26 9.30e-04 AACCAATACA AAAGGACA TTTCAGGGAA chr22:19992560-19992640 33 9.30e-04 tatgttcatc aaaggaca caatcaatat chr1:204640230-204640310 4 1.01e-03 ctg cagacaca ggagggaagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAMASAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:842657-842737 2.1e-05 62_[+4]_10 chr1:244530153-244530233 2.1e-05 40_[+4]_32 chr15:67333465-67333545 2.1e-05 3_[+4]_69 chr6:41733903-41733983 2.1e-05 17_[+4]_55 chr7:139684543-139684623 2.1e-05 31_[+4]_41 chr7:137859057-137859137 2.1e-05 38_[+4]_34 chr13:91973406-91973486 2.1e-05 4_[+4]_68 chr1:192954726-192954806 2.1e-05 5_[+4]_67 chr1:44494429-44494509 2.1e-05 37_[+4]_35 chr1:169636703-169636783 2.1e-05 61_[+4]_11 chr11:62264316-62264396 2.1e-05 48_[+4]_24 chr17:74214984-74215064 4.2e-05 60_[+4]_12 chr6:30509909-30509989 4.2e-05 56_[+4]_16 chr15:75628329-75628409 8.4e-05 67_[+4]_5 chr6:33396720-33396800 8.4e-05 13_[+4]_59 chr10:22971934-22972014 8.4e-05 43_[+4]_29 chr3:45167742-45167822 8.4e-05 46_[+4]_26 chr2:232651094-232651174 8.4e-05 46_[+4]_26 chr9:75814579-75814659 8.4e-05 1_[+4]_71 chr8:2587797-2587877 0.00014 34_[+4]_38 chr10:70996982-70997062 0.00014 19_[+4]_53 chr5:180456642-180456722 0.00014 1_[+4]_71 chr22:19815690-19815770 0.00014 69_[+4]_3 chr22:22367272-22367352 0.00016 13_[+4]_59 chr1:47797600-47797680 0.00016 14_[+4]_58 chr22:22445280-22445360 0.00022 7_[+4]_65 chr6:14891004-14891084 0.00022 69_[+4]_3 chr1:8937755-8937835 0.00022 20_[+4]_52 chr4:82730227-82730307 0.00022 44_[+4]_28 chr2:96607499-96607579 0.00022 37_[+4]_35 chr22:19089637-19089717 0.00022 40_[+4]_32 chr7:99841537-99841617 0.00022 3_[+4]_69 chr7:135176165-135176245 0.00026 44_[+4]_28 chr5:133892596-133892676 0.00026 66_[+4]_6 chr1:182205949-182206029 0.00026 63_[+4]_9 chr7:86668697-86668777 0.00026 59_[+4]_13 chr21:40286190-40286270 0.00026 61_[+4]_11 chr8:145159216-145159296 0.00032 43_[+4]_29 chr6:8101900-8101980 0.00032 55_[+4]_17 chr17:74543922-74544002 0.00034 9_[+4]_63 chr19:49016100-49016180 0.00034 46_[+4]_26 chr5:10708449-10708529 0.00034 35_[+4]_37 chr6:1403087-1403167 0.00034 4_[+4]_68 chr1:145080541-145080621 0.00037 65_[+4]_7 chr3:99667501-99667581 0.00041 38_[+4]_34 chr16:21514514-21514594 0.00041 [+4]_72 chr1:234668007-234668087 0.00049 32_[+4]_40 chr9:138730236-138730316 0.00049 7_[+4]_65 chr16:29607650-29607730 0.00049 43_[+4]_29 chr17:27193107-27193187 0.00049 17_[+4]_55 chr9:135674989-135675069 0.00052 3_[+4]_69 chr7:55271939-55272019 0.00052 14_[+4]_58 chr22:19804072-19804152 0.00052 66_[+4]_6 chr10:62042260-62042340 0.00052 4_[+4]_68 chr8:74502183-74502263 0.00052 5_[+4]_67 chr22:19822316-19822396 0.00054 18_[+4]_54 chr17:33288541-33288621 0.0006 7_[+4]_65 chr3:41643787-41643867 0.0006 56_[+4]_16 chr7:38373856-38373936 0.0006 3_[+4]_69 chr2:27294025-27294105 0.00069 31_[+4]_41 chr12:107487535-10748761 0.00069 44_[+4]_28 chr1:93645042-93645122 0.00069 8_[+4]_64 chr19:45394335-45394415 0.00093 25_[+4]_47 chr22:19992560-19992640 0.00093 32_[+4]_40 chr1:204640230-204640310 0.001 3_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAMASAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAMASAAA width=8 seqs=65 chr7:842657-842737 ( 63) GAAAGAAA 1 chr1:244530153-244530233 ( 41) GAAAGAAA 1 chr15:67333465-67333545 ( 4) GAAAGAAA 1 chr6:41733903-41733983 ( 18) GAAAGAAA 1 chr7:139684543-139684623 ( 32) GAAAGAAA 1 chr7:137859057-137859137 ( 39) GAAAGAAA 1 chr13:91973406-91973486 ( 5) GAAAGAAA 1 chr1:192954726-192954806 ( 6) GAAAGAAA 1 chr1:44494429-44494509 ( 38) GAAAGAAA 1 chr1:169636703-169636783 ( 62) GAAAGAAA 1 chr11:62264316-62264396 ( 49) GAAAGAAA 1 chr17:74214984-74215064 ( 61) CAAAGAAA 1 chr6:30509909-30509989 ( 57) CAAAGAAA 1 chr15:75628329-75628409 ( 68) AAAAGAAA 1 chr6:33396720-33396800 ( 14) GACAGAAA 1 chr10:22971934-22972014 ( 44) AAAAGAAA 1 chr3:45167742-45167822 ( 47) GACAGAAA 1 chr2:232651094-232651174 ( 47) GACAGAAA 1 chr9:75814579-75814659 ( 2) AAAAGAAA 1 chr8:2587797-2587877 ( 35) GAAACAAA 1 chr10:70996982-70997062 ( 20) AACAGAAA 1 chr5:180456642-180456722 ( 2) GAAACAAA 1 chr22:19815690-19815770 ( 70) AACAGAAA 1 chr22:22367272-22367352 ( 14) CAAACAAA 1 chr1:47797600-47797680 ( 15) CAAACAAA 1 chr22:22445280-22445360 ( 8) AAAACAAA 1 chr6:14891004-14891084 ( 70) AAAACAAA 1 chr1:8937755-8937835 ( 21) AAAACAAA 1 chr4:82730227-82730307 ( 45) AAAACAAA 1 chr2:96607499-96607579 ( 38) GAAAGACA 1 chr22:19089637-19089717 ( 41) GACACAAA 1 chr7:99841537-99841617 ( 4) AAAACAAA 1 chr7:135176165-135176245 ( 45) CAAAGACA 1 chr5:133892596-133892676 ( 67) CACACAAA 1 chr1:182205949-182206029 ( 64) CACACAAA 1 chr7:86668697-86668777 ( 60) CAAAGACA 1 chr21:40286190-40286270 ( 62) CACACAAA 1 chr8:145159216-145159296 ( 44) GACAGACA 1 chr6:8101900-8101980 ( 56) AACACAAA 1 chr17:74543922-74544002 ( 10) CACAGACA 1 chr19:49016100-49016180 ( 47) CACAGACA 1 chr5:10708449-10708529 ( 36) CACAGACA 1 chr6:1403087-1403167 ( 5) CACAGACA 1 chr1:145080541-145080621 ( 66) AACAGACA 1 chr3:99667501-99667581 ( 39) GAGAGAAA 1 chr16:21514514-21514594 ( 1) GAGAGAAA 1 chr1:234668007-234668087 ( 33) CAGAGAAA 1 chr9:138730236-138730316 ( 8) GACACACA 1 chr16:29607650-29607730 ( 44) GAAGGAAA 1 chr17:27193107-27193187 ( 18) AAAACACA 1 chr9:135674989-135675069 ( 4) CACACACA 1 chr7:55271939-55272019 ( 15) CACACACA 1 chr22:19804072-19804152 ( 67) CACACACA 1 chr10:62042260-62042340 ( 5) CACACACA 1 chr8:74502183-74502263 ( 6) CAAGGAAA 1 chr22:19822316-19822396 ( 19) AAGAGAAA 1 chr17:33288541-33288621 ( 8) GACGGAAA 1 chr3:41643787-41643867 ( 57) AAAGGAAA 1 chr7:38373856-38373936 ( 4) AAAGGAAA 1 chr2:27294025-27294105 ( 32) CAGACAAA 1 chr12:107487535-10748761 ( 45) GAAGCAAA 1 chr1:93645042-93645122 ( 9) AACGGAAA 1 chr19:45394335-45394415 ( 26) AAAGGACA 1 chr22:19992560-19992640 ( 33) AAAGGACA 1 chr1:204640230-204640310 ( 4) CAGACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAMASAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.46427 E= 1.4e-001 14 44 65 -1267 191 -1267 -1267 -1267 106 57 -141 -1267 170 -1267 -82 -1267 -1267 57 140 -1267 191 -1267 -1267 -1267 144 21 -1267 -1267 191 -1267 -1267 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAMASAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 1.4e-001 0.292308 0.323077 0.384615 0.000000 1.000000 0.000000 0.000000 0.000000 0.553846 0.353846 0.092308 0.000000 0.861538 0.000000 0.138462 0.000000 0.000000 0.353846 0.646154 0.000000 1.000000 0.000000 0.000000 0.000000 0.723077 0.276923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAMASAAA MEME-4 regular expression -------------------------------------------------------------------------------- [GCA]A[AC]A[GC]A[AC]A -------------------------------------------------------------------------------- Time 16.24 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTCYYTC MEME-5 width = 8 sites = 26 llr = 224 E-value = 1.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTCYYTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 58:a66:a probability G :::::::: matrix T 52a:44a: bits 2.1 * ** 1.9 ** ** 1.7 ** ** 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 ******** (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCTC consensus T TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTCYYTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:47268557-47268637 44 1.16e-05 CTCTGATCAG CCTCCCTC CTCCTCAACT chr1:201612349-201612429 45 1.16e-05 tccttccttc cctccctc tctttctttc chr5:96265139-96265219 3 1.16e-05 tc cctccctc ttttcttttc chr6:166767168-166767248 44 1.16e-05 acactttctt cctccctc tctccctatc chr1:156627723-156627803 17 2.38e-05 tggctcccat tctccctc ccctaaagtc chr12:56367623-56367703 31 2.38e-05 CTTCGAGGTT TCTCCCTC GCTATTGGCT chr5:180707004-180707084 65 2.38e-05 cactgtcttt tctccctc tccctggc chr17:57615777-57615857 67 4.82e-05 ttccccttct cctccttc tcctcc chr16:88086924-88087004 60 4.82e-05 cccactccca cctccttc actatcatca chr14:23563555-23563635 31 4.82e-05 ACCTGCCTCG CCTCTCTC ACCAATATTC chr22:20846325-20846405 10 4.82e-05 CTTTTCTGA CCTCTCTC TTTCATCCCA chr19:14495553-14495633 34 4.82e-05 tctctctcca cctctctc tatcACCATG chr2:27294025-27294105 15 7.37e-05 GACAGCGCGC TCTCTCTC TACTCTGTGC chr21:35318823-35318903 71 7.37e-05 tctctctctc tctctctc tc chr3:45167742-45167822 6 7.37e-05 ttctc tctctctc tctctgtttc chr1:206926049-206926129 48 7.37e-05 tctttgtttt tctccttc cttccttcct chr22:23608152-23608232 62 7.37e-05 atctctctag tctccttc catctgtacc chr18:9093841-9093921 19 9.98e-05 tttctccttc tctctttc gtttccagct chr12:76574860-76574940 44 9.98e-05 tctctttttc tctctttc tccctttctc chr17:73409299-73409379 53 9.98e-05 tttctttttt tctctttc tttcttcatt chr19:7894891-7894971 29 1.12e-04 TCCTTCACCG CTTCCCTC ATTTCAATTC chr8:56909140-56909220 70 1.12e-04 tccatccttc cttccctc ctt chr12:66010039-66010119 42 1.50e-04 tttttccttc cttccttc ccttttctcc chr1:211820077-211820157 4 1.77e-04 ttc tttccttc ttttgtttcc chr19:8626537-8626617 33 1.77e-04 tcccttccct tttccttc cttccttcct chr19:47930867-47930947 47 2.50e-04 ccctcctact cccctctc ccctcgtctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTCYYTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:47268557-47268637 1.2e-05 43_[+5]_29 chr1:201612349-201612429 1.2e-05 44_[+5]_28 chr5:96265139-96265219 1.2e-05 2_[+5]_70 chr6:166767168-166767248 1.2e-05 43_[+5]_29 chr1:156627723-156627803 2.4e-05 16_[+5]_56 chr12:56367623-56367703 2.4e-05 30_[+5]_42 chr5:180707004-180707084 2.4e-05 64_[+5]_8 chr17:57615777-57615857 4.8e-05 66_[+5]_6 chr16:88086924-88087004 4.8e-05 59_[+5]_13 chr14:23563555-23563635 4.8e-05 30_[+5]_42 chr22:20846325-20846405 4.8e-05 9_[+5]_63 chr19:14495553-14495633 4.8e-05 33_[+5]_39 chr2:27294025-27294105 7.4e-05 14_[+5]_58 chr21:35318823-35318903 7.4e-05 70_[+5]_2 chr3:45167742-45167822 7.4e-05 5_[+5]_67 chr1:206926049-206926129 7.4e-05 47_[+5]_25 chr22:23608152-23608232 7.4e-05 61_[+5]_11 chr18:9093841-9093921 0.0001 18_[+5]_54 chr12:76574860-76574940 0.0001 43_[+5]_29 chr17:73409299-73409379 0.0001 52_[+5]_20 chr19:7894891-7894971 0.00011 28_[+5]_44 chr8:56909140-56909220 0.00011 69_[+5]_3 chr12:66010039-66010119 0.00015 41_[+5]_31 chr1:211820077-211820157 0.00018 3_[+5]_69 chr19:8626537-8626617 0.00018 32_[+5]_40 chr19:47930867-47930947 0.00025 46_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTCYYTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTCYYTC width=8 seqs=26 chr7:47268557-47268637 ( 44) CCTCCCTC 1 chr1:201612349-201612429 ( 45) CCTCCCTC 1 chr5:96265139-96265219 ( 3) CCTCCCTC 1 chr6:166767168-166767248 ( 44) CCTCCCTC 1 chr1:156627723-156627803 ( 17) TCTCCCTC 1 chr12:56367623-56367703 ( 31) TCTCCCTC 1 chr5:180707004-180707084 ( 65) TCTCCCTC 1 chr17:57615777-57615857 ( 67) CCTCCTTC 1 chr16:88086924-88087004 ( 60) CCTCCTTC 1 chr14:23563555-23563635 ( 31) CCTCTCTC 1 chr22:20846325-20846405 ( 10) CCTCTCTC 1 chr19:14495553-14495633 ( 34) CCTCTCTC 1 chr2:27294025-27294105 ( 15) TCTCTCTC 1 chr21:35318823-35318903 ( 71) TCTCTCTC 1 chr3:45167742-45167822 ( 6) TCTCTCTC 1 chr1:206926049-206926129 ( 48) TCTCCTTC 1 chr22:23608152-23608232 ( 62) TCTCCTTC 1 chr18:9093841-9093921 ( 19) TCTCTTTC 1 chr12:76574860-76574940 ( 44) TCTCTTTC 1 chr17:73409299-73409379 ( 53) TCTCTTTC 1 chr19:7894891-7894971 ( 29) CTTCCCTC 1 chr8:56909140-56909220 ( 70) CTTCCCTC 1 chr12:66010039-66010119 ( 42) CTTCCTTC 1 chr1:211820077-211820157 ( 4) TTTCCTTC 1 chr19:8626537-8626617 ( 33) TTTCCTTC 1 chr19:47930867-47930947 ( 47) CCCCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTCYYTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 1.7e+002 -1134 107 -1134 100 -1134 176 -1134 -38 -1134 -263 -1134 194 -1134 207 -1134 -1134 -1134 137 -1134 62 -1134 137 -1134 62 -1134 -1134 -1134 200 -1134 207 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTCYYTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.7e+002 0.000000 0.500000 0.000000 0.500000 0.000000 0.807692 0.000000 0.192308 0.000000 0.038462 0.000000 0.961538 0.000000 1.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.384615 0.000000 0.615385 0.000000 0.384615 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTCYYTC MEME-5 regular expression -------------------------------------------------------------------------------- [CT]CTC[CT][CT]TC -------------------------------------------------------------------------------- Time 19.82 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:20816173-20816253 8.62e-02 80 chr1:204640230-204640310 8.56e-01 80 chr22:20915625-20915705 2.81e-01 80 chr11:62264316-62264396 2.27e-01 48_[+4(2.13e-05)]_[+4(2.13e-05)]_16 chr6:7391034-7391114 1.54e-03 70_[+1(1.39e-05)]_2 chr6:37177708-37177788 9.99e-01 80 chr6:158786465-158786545 2.63e-04 19_[+3(1.46e-05)]_[+3(1.46e-05)]_6_\ [+3(1.46e-05)]_31 chr22:21240694-21240774 4.46e-01 80 chr22:21377514-21377594 4.55e-02 80 chr1:38413040-38413120 8.42e-02 80 chr9:130913432-130913512 1.00e+00 80 chr16:85421578-85421658 1.00e+00 80 chr19:916257-916337 9.62e-01 80 chr7:135399794-135399874 9.98e-01 80 chr10:74263523-74263603 6.47e-01 80 chr22:19405801-19405881 9.17e-01 80 chr7:99841537-99841617 3.68e-01 80 chr22:22254881-22254961 4.25e-04 6_[+3(1.46e-05)]_66 chr1:93645042-93645122 5.23e-01 80 chr9:75814579-75814659 4.24e-01 1_[+4(8.42e-05)]_10_[+4(8.42e-05)]_\ 53 chr22:19089637-19089717 8.65e-02 80 chr6:8101900-8101980 8.74e-06 80 chr14:71067310-71067390 6.59e-03 66_[+5(9.98e-05)]_6 chr7:95864868-95864948 1.00e+00 80 chr22:21811107-21811187 5.52e-01 80 chr5:85913254-85913334 6.12e-05 31_[+1(2.85e-05)]_41 chr17:27193107-27193187 6.80e-01 80 chr8:56909140-56909220 7.36e-06 8_[+2(2.49e-05)]_16_[+2(2.49e-05)]_\ 14_[+3(7.13e-05)]_2_[+2(2.49e-05)]_8 chr14:23938868-23938948 9.99e-01 80 chr22:23608152-23608232 7.12e-03 61_[+5(7.37e-05)]_11 chr2:239197489-239197569 6.76e-01 80 chr6:26338179-26338259 2.52e-02 39_[+2(3.69e-05)]_33 chr22:19815690-19815770 5.20e-01 80 chr14:68283250-68283330 6.44e-01 80 chr19:46219692-46219772 4.22e-01 80 chr7:158256208-158256288 1.69e-01 35_[+2(7.40e-05)]_37 chr22:19768571-19768651 1.70e-03 59_[+2(7.40e-05)]_13 chr1:197748162-197748242 1.67e-02 47_[+3(5.80e-05)]_25 chr1:167901892-167901972 9.85e-01 80 chr1:26559933-26560013 1.49e-01 80 chr10:103543089-10354316 3.88e-02 80 chr17:36453210-36453290 4.05e-01 80 chr22:19981726-19981806 9.51e-01 80 chr20:18447973-18448053 2.10e-01 80 chr19:9695825-9695905 3.62e-01 80 chr10:75404421-75404501 9.68e-01 80 chr22:19940913-19940993 4.34e-03 12_[+2(3.69e-05)]_60 chr1:179922494-179922574 2.66e-02 23_[+2(3.69e-05)]_49 chr5:180707004-180707084 8.89e-04 64_[+5(2.38e-05)]_8 chr12:107487535-10748761 1.41e-03 80 chr1:169636703-169636783 2.27e-01 61_[+4(2.13e-05)]_11 chr12:66010039-66010119 3.88e-07 7_[+3(1.46e-05)]_2_[+3(1.46e-05)]_2_\ [+3(1.46e-05)]_1_[+2(2.49e-05)]_13_[+2(2.49e-05)]_15 chr1:23881962-23882042 9.87e-01 80 chr3:122101901-122101981 7.85e-02 80 chr10:102027387-10202746 9.60e-01 80 chr8:74502183-74502263 7.65e-01 80 chr1:215742536-215742616 2.40e-02 37_[+2(3.69e-05)]_35 chr16:29607650-29607730 7.53e-01 80 chr17:79499116-79499196 1.00e+00 80 chr7:150726518-150726598 1.15e-04 48_[+3(1.46e-05)]_2_[+3(1.46e-05)]_\ 2_[+3(1.46e-05)]_4 chr2:26986763-26986843 9.12e-01 80 chr7:99430403-99430483 1.15e-02 80 chr22:41777447-41777527 9.97e-01 80 chr6:147543010-147543090 7.96e-03 80 chr5:37554745-37554825 7.19e-01 80 chr6:1403087-1403167 6.84e-01 80 chr7:152611373-152611453 7.82e-01 80 chr1:205781149-205781229 9.97e-02 80 chr6:30509909-30509989 4.93e-03 56_[+4(4.20e-05)]_16 chr6:166767168-166767248 1.10e-07 6_[+3(4.25e-05)]_[+3(7.13e-05)]_\ [+1(1.39e-05)]_13_[+5(1.16e-05)]_20_[+2(2.49e-05)]_1 chr2:96607499-96607579 4.89e-01 80 chr22:22265802-22265882 1.81e-02 80 chr9:6015561-6015641 8.62e-01 80 chr7:2665686-2665766 2.83e-02 80 chr6:20529040-20529120 7.52e-01 80 chr5:180456642-180456722 1.63e-01 80 chr20:48551652-48551732 4.90e-02 80 chr1:151254587-151254667 9.97e-01 80 chr12:132024570-13202465 1.00e+00 80 chr1:44494429-44494509 2.27e-01 2_[+4(8.42e-05)]_5_[+4(8.42e-05)]_\ 10_[+4(2.13e-05)]_39 chr8:145159216-145159296 6.49e-01 80 chr4:82730227-82730307 3.17e-01 80 chr22:22617761-22617841 2.98e-01 80 chr5:10708449-10708529 6.83e-01 80 chr1:201547170-201547250 1.46e-06 13_[+1(4.31e-05)]_18_[+2(7.40e-05)]_\ [+3(1.46e-05)]_25 chr2:91781134-91781214 4.93e-04 28_[+5(4.82e-05)]_44 chr20:29650405-29650485 2.89e-02 5_[+1(8.82e-05)]_67 chr19:49453886-49453966 2.09e-01 80 chr21:33652695-33652775 6.78e-02 80 chrX:49047620-49047700 2.26e-05 24_[+5(1.16e-05)]_48 chr16:21514514-21514594 7.22e-01 80 chr16:5083884-5083964 9.82e-01 80 chr11:75112078-75112158 1.97e-01 80 chr17:73409299-73409379 1.40e-06 2_[+1(1.39e-05)]_3_[+1(1.39e-05)]_4_\ [+3(1.46e-05)]_9_[+3(1.46e-05)]_7_[+1(1.39e-05)]_5_[+1(1.39e-05)]_2 chr10:70996982-70997062 4.88e-04 80 chr11:2605700-2605780 9.98e-01 80 chr6:31653600-31653680 7.39e-02 80 chr1:241899170-241899250 6.33e-03 80 chr19:30829034-30829114 1.00e+00 80 chr10:62042260-62042340 1.56e-01 80 chr18:2867039-2867119 1.30e-01 80 chr22:22768629-22768709 7.70e-04 9_[+1(5.84e-05)]_38_[+3(1.46e-05)]_\ 17 chr1:192954726-192954806 1.61e-01 5_[+4(2.13e-05)]_67 chr17:74667896-74667976 9.10e-01 80 chr2:70365964-70366044 3.53e-01 80 chr1:142834608-142834688 8.55e-02 80 chr11:46269640-46269720 9.86e-01 80 chr2:70314944-70315024 9.37e-01 80 chr12:118499561-11849964 9.75e-01 80 chr20:2644796-2644876 6.95e-01 80 chr1:151735970-151736050 9.56e-01 80 chr13:91973406-91973486 2.27e-01 4_[+4(2.13e-05)]_[+4(2.13e-05)]_60 chr7:38373856-38373936 7.90e-01 80 chr3:195891605-195891685 9.86e-01 80 chr19:7894891-7894971 3.90e-03 80 chr6:16128735-16128815 3.26e-02 [+1(5.84e-05)]_72 chr11:45868762-45868842 4.03e-01 80 chr3:12747826-12747906 9.18e-01 80 chr7:137859057-137859137 2.27e-01 1_[+4(2.13e-05)]_15_[+4(2.13e-05)]_\ 6_[+4(2.13e-05)]_5_[+4(4.20e-05)]_21 chr11:119205350-11920543 8.83e-01 80 chr1:47797600-47797680 5.46e-01 80 chr6:43721665-43721745 1.00e+00 80 chr22:19992560-19992640 7.72e-01 80 chr19:14495553-14495633 1.51e-04 18_[+1(7.27e-05)]_7_[+5(4.82e-05)]_\ 39 chr1:149860470-149860550 1.41e-02 80 chr12:76574860-76574940 2.63e-07 19_[+2(1.22e-05)]_16_[+5(9.98e-05)]_\ 2_[+2(8.67e-05)]_1_[+1(1.39e-05)]_1_[+2(2.49e-05)]_1 chr21:40286190-40286270 6.25e-01 80 chr18:9093841-9093921 3.14e-06 5_[+1(1.39e-05)]_5_[+5(9.98e-05)]_9_\ [+3(2.85e-05)]_37 chr22:23624812-23624892 4.70e-01 80 chr11:59383423-59383503 6.39e-01 80 chr5:60240777-60240857 6.75e-01 80 chr22:20910931-20911011 9.51e-01 80 chr22:21293977-21294057 2.47e-01 80 chr2:232651094-232651174 4.23e-01 46_[+4(8.42e-05)]_26 chr12:120107405-12010748 9.07e-02 80 chr14:55878467-55878547 1.46e-01 80 chr17:4870632-4870712 7.97e-01 80 chr22:20846325-20846405 1.64e-05 9_[+5(4.82e-05)]_63 chr1:206926049-206926129 3.73e-07 2_[+1(1.39e-05)]_8_[+1(1.39e-05)]_6_\ [+1(1.39e-05)]_10_[+2(2.49e-05)]_[+2(2.49e-05)]_1_[+1(1.39e-05)]_5 chr10:73619423-73619503 1.49e-04 16_[+2(3.69e-05)]_56 chr11:57163842-57163922 1.36e-02 19_[+2(6.10e-05)]_53 chr14:23563555-23563635 3.13e-03 21_[+2(3.69e-05)]_1_[+5(4.82e-05)]_\ 42 chr5:96265139-96265219 4.39e-08 2_[+5(1.16e-05)]_1_[+3(1.46e-05)]_\ [+2(2.49e-05)]_[+2(2.49e-05)]_[+1(4.31e-05)]_1_[+2(2.49e-05)]_3_\ [+1(1.39e-05)]_17 chr11:63953466-63953546 5.26e-01 80 chr1:894528-894608 1.00e-01 80 chr17:40374077-40374157 9.93e-01 80 chr1:201612349-201612429 4.23e-08 6_[+1(1.39e-05)]_10_[+2(1.22e-05)]_\ 3_[+2(2.49e-05)]_1_[+5(1.16e-05)]_3_[+1(1.39e-05)]_6_[+2(2.49e-05)]_3 chr17:26368569-26368649 7.38e-02 80 chr3:99667501-99667581 7.22e-01 80 chr19:47365731-47365811 9.38e-03 80 chr14:99947767-99947847 9.80e-01 80 chr7:139684543-139684623 2.27e-01 7_[+4(2.13e-05)]_8_[+4(2.13e-05)]_\ [+4(2.13e-05)]_1_[+4(2.13e-05)]_13_[+4(2.13e-05)]_11 chr3:45167742-45167822 5.65e-08 1_[+5(7.37e-05)]_[+5(7.37e-05)]_2_\ [+3(1.46e-05)]_19_[+4(8.42e-05)]_26 chr6:28910989-28911069 1.46e-02 80 chr1:32538059-32538139 8.98e-01 80 chr7:100184113-100184193 8.18e-01 80 chr12:131365651-13136573 1.87e-01 80 chr17:17875922-17876002 2.05e-01 80 chr8:125700502-125700582 1.00e+00 80 chr19:45394335-45394415 8.21e-01 80 chr22:18359864-18359944 1.00e+00 80 chr17:8059830-8059910 9.94e-01 80 chr19:34012616-34012696 9.80e-01 80 chr7:47268557-47268637 6.09e-05 3_[+2(7.40e-05)]_11_[+2(1.22e-05)]_\ 13_[+5(1.16e-05)]_29 chr12:53773582-53773662 2.82e-01 80 chrX:54466809-54466889 9.48e-01 80 chr1:142818556-142818636 4.85e-02 80 chr17:61627657-61627737 8.86e-01 80 chr19:42773075-42773155 1.46e-01 80 chr1:174841237-174841317 7.45e-04 22_[+3(1.46e-05)]_24_[+3(1.46e-05)]_\ 18 chr6:41733903-41733983 2.27e-01 5_[+4(2.13e-05)]_[+4(2.13e-05)]_\ [+4(2.13e-05)]_28_[+4(2.13e-05)]_15 chr19:18758330-18758410 1.00e+00 80 chr6:32146087-32146167 7.40e-05 35_[+3(1.46e-05)]_37 chr19:14117205-14117285 8.31e-01 80 chr16:88086924-88087004 6.28e-03 59_[+5(4.82e-05)]_13 chr10:114206878-11420695 1.02e-02 80 chr12:56367623-56367703 1.26e-03 30_[+5(2.38e-05)]_42 chr16:84149555-84149635 4.32e-03 80 chr7:86668697-86668777 2.25e-01 80 chr6:17819699-17819779 8.82e-01 80 chr7:142585114-142585194 1.00e+00 80 chr22:19804072-19804152 2.71e-01 80 chr19:49016100-49016180 6.79e-01 80 chr10:22971934-22972014 5.58e-04 38_[+4(8.42e-05)]_3_[+4(8.42e-05)]_\ 23 chr12:65073834-65073914 3.98e-04 30_[+3(4.25e-05)]_42 chr1:182205949-182206029 6.24e-01 80 chr22:22367272-22367352 5.23e-01 80 chr11:20384828-20384908 3.92e-01 80 chr16:22206646-22206726 3.41e-01 80 chrX:19362009-19362089 9.51e-01 80 chr6:33396720-33396800 4.24e-01 13_[+4(8.42e-05)]_59 chr7:55271939-55272019 7.24e-01 80 chr21:35318823-35318903 2.12e-07 [+1(1.39e-05)]_2_[+1(1.39e-05)]_\ [+1(1.39e-05)]_6_[+2(2.49e-05)]_[+2(2.49e-05)]_[+2(2.49e-05)]_\ [+5(7.37e-05)]_[+5(7.37e-05)]_[+5(7.37e-05)] chr6:137088501-137088581 8.79e-01 80 chr21:39488065-39488145 4.20e-01 80 chr8:146277856-146277936 9.85e-01 80 chr15:67333465-67333545 2.27e-01 3_[+4(2.13e-05)]_69 chr11:47869806-47869886 2.46e-01 80 chr1:244530153-244530233 1.62e-02 36_[+4(2.13e-05)]_36 chr17:38210610-38210690 5.97e-02 80 chr19:10828455-10828535 1.27e-04 53_[+2(1.22e-05)]_19 chr22:22641857-22641937 3.63e-02 80 chr11:5310377-5310457 4.77e-02 31_[+1(5.84e-05)]_[+1(5.84e-05)]_33 chr1:8937755-8937835 4.06e-01 80 chr9:135674989-135675069 6.22e-01 80 chr19:6425170-6425250 9.87e-01 80 chr15:89631480-89631560 5.50e-01 80 chr9:138730236-138730316 7.67e-02 80 chr8:2587797-2587877 2.18e-01 80 chr22:20423490-20423570 1.47e-01 80 chr6:14891004-14891084 1.96e-01 80 chr1:234668007-234668087 7.53e-01 80 chr5:133892596-133892676 4.49e-01 80 chr16:74401175-74401255 8.90e-01 80 chr19:8626537-8626617 9.59e-07 [+3(2.85e-05)]_9_[+3(7.13e-05)]_10_\ [+2(2.49e-05)]_[+2(1.22e-05)]_2_[+1(4.31e-05)]_3_[+1(5.84e-05)]_8 chr16:70557304-70557384 2.81e-01 80 chr3:41643787-41643867 7.90e-01 80 chr11:62521647-62521727 9.31e-04 65_[+5(1.16e-05)]_7 chr1:27995587-27995667 5.80e-01 80 chr9:130829742-130829822 7.78e-01 80 chr19:45943670-45943750 3.22e-02 67_[+1(7.27e-05)]_5 chr17:73663394-73663474 9.99e-01 80 chr20:562020-562100 1.02e-02 57_[+3(8.62e-05)]_15 chr7:135176165-135176245 5.71e-01 80 chr19:47748536-47748616 9.65e-01 80 chr22:19822316-19822396 7.59e-01 80 chr20:62478439-62478519 6.84e-01 80 chr4:107237502-107237582 1.00e+00 80 chr22:22445280-22445360 2.90e-01 80 chr19:12848264-12848344 2.93e-01 80 chr12:114404004-11440408 6.81e-01 80 chr4:152682099-152682179 9.23e-01 80 chr7:842657-842737 2.27e-01 36_[+4(8.42e-05)]_18_[+4(2.13e-05)]_\ 10 chr2:27294025-27294105 2.47e-03 14_[+5(7.37e-05)]_58 chr1:145080541-145080621 5.32e-01 80 chr15:75628329-75628409 3.67e-02 67_[+4(8.42e-05)]_5 chr17:74543922-74544002 6.68e-01 80 chr17:57615777-57615857 1.26e-05 52_[+3(7.13e-05)]_6_[+5(4.82e-05)]_\ 6 chr1:156627723-156627803 4.18e-04 16_[+5(2.38e-05)]_27_[+2(6.10e-05)]_\ 21 chrX:108780008-108780088 5.39e-01 80 chr22:17015632-17015712 9.75e-01 80 chr2:200820370-200820450 5.64e-04 64_[+5(9.98e-05)]_8 chr15:27333006-27333086 1.00e+00 80 chr9:139305151-139305231 8.34e-01 80 chr17:74214984-74215064 7.74e-02 60_[+4(4.20e-05)]_12 chr17:33288541-33288621 3.22e-01 80 chr12:4647732-4647812 6.49e-02 80 chr1:211820077-211820157 3.86e-07 21_[+1(1.39e-05)]_[+1(1.39e-05)]_\ [+1(1.39e-05)]_9_[+2(2.49e-05)]_5_[+1(1.39e-05)]_5 chr19:47930867-47930947 3.71e-02 80 chr16:33342900-33342980 7.70e-02 54_[+3(5.80e-05)]_18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************