******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/YBX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:23084574-23084654 1.0000 80 chr8:21921569-21921649 1.0000 80 chr22:17034178-17034258 1.0000 80 chr19:3322960-3323040 1.0000 80 chr9:44993180-44993260 1.0000 80 chr9:132599853-132599933 1.0000 80 chr22:22639613-22639693 1.0000 80 chr20:45820157-45820237 1.0000 80 chr4:40297250-40297330 1.0000 80 chr22:21169980-21170060 1.0000 80 chr1:50937541-50937621 1.0000 80 chr6:147836571-147836651 1.0000 80 chr9:130983435-130983515 1.0000 80 chr1:28143494-28143574 1.0000 80 chr2:171879965-171880045 1.0000 80 chr10:45912215-45912295 1.0000 80 chr12:125575048-12557512 1.0000 80 chr1:201227535-201227615 1.0000 80 chr9:101339300-101339380 1.0000 80 chr7:73049868-73049948 1.0000 80 chr1:244598892-244598972 1.0000 80 chr15:22501677-22501757 1.0000 80 chr6:29592005-29592085 1.0000 80 chr4:129210179-129210259 1.0000 80 chr6:105848277-105848357 1.0000 80 chr11:75979657-75979737 1.0000 80 chr3:50687598-50687678 1.0000 80 chr1:201639867-201639947 1.0000 80 chr22:21297544-21297624 1.0000 80 chr12:53038916-53038996 1.0000 80 chr21:39619355-39619435 1.0000 80 chr13:91772368-91772448 1.0000 80 chr19:1768739-1768819 1.0000 80 chr22:22813335-22813415 1.0000 80 chr7:151539570-151539650 1.0000 80 chr2:9792429-9792509 1.0000 80 chr6:11313660-11313740 1.0000 80 chr6:17587105-17587185 1.0000 80 chr4:145059336-145059416 1.0000 80 chr10:121186905-12118698 1.0000 80 chr20:50162176-50162256 1.0000 80 chr7:116070370-116070450 1.0000 80 chr17:35088825-35088905 1.0000 80 chr22:22851769-22851849 1.0000 80 chr10:134241052-13424113 1.0000 80 chr22:21422580-21422660 1.0000 80 chr1:30811829-30811909 1.0000 80 chr1:31172805-31172885 1.0000 80 chr1:21469759-21469839 1.0000 80 chr1:226299436-226299516 1.0000 80 chr1:144595671-144595751 1.0000 80 chr20:48939389-48939469 1.0000 80 chr8:30024529-30024609 1.0000 80 chr3:196249741-196249821 1.0000 80 chr6:138291178-138291258 1.0000 80 chr22:20241282-20241362 1.0000 80 chr19:6209847-6209927 1.0000 80 chr1:28470862-28470942 1.0000 80 chr19:2440727-2440807 1.0000 80 chr1:21902589-21902669 1.0000 80 chr2:176035866-176035946 1.0000 80 chr13:114919111-11491919 1.0000 80 chr11:95736081-95736161 1.0000 80 chr6:28086127-28086207 1.0000 80 chr1:924386-924466 1.0000 80 chr12:76101532-76101612 1.0000 80 chr19:15291259-15291339 1.0000 80 chr12:122927865-12292794 1.0000 80 chr22:22768618-22768698 1.0000 80 chr7:148028687-148028767 1.0000 80 chr12:132649180-13264926 1.0000 80 chr2:131482136-131482216 1.0000 80 chr11:69965761-69965841 1.0000 80 chr16:85381833-85381913 1.0000 80 chr12:92075856-92075936 1.0000 80 chr1:22031400-22031480 1.0000 80 chr18:667098-667178 1.0000 80 chr13:45639592-45639672 1.0000 80 chr8:42529788-42529868 1.0000 80 chr12:49246698-49246778 1.0000 80 chr16:85467228-85467308 1.0000 80 chr7:128114277-128114357 1.0000 80 chr3:13620767-13620847 1.0000 80 chr7:101690592-101690672 1.0000 80 chr1:21543202-21543282 1.0000 80 chr20:44973563-44973643 1.0000 80 chr17:56553493-56553573 1.0000 80 chr22:20782610-20782690 1.0000 80 chr2:10447727-10447807 1.0000 80 chr1:32937425-32937505 1.0000 80 chr16:67088064-67088144 1.0000 80 chr17:41318135-41318215 1.0000 80 chr7:134269184-134269264 1.0000 80 chr3:33978447-33978527 1.0000 80 chr21:46576099-46576179 1.0000 80 chr1:246988973-246989053 1.0000 80 chr19:5681570-5681650 1.0000 80 chr11:69871693-69871773 1.0000 80 chr1:25520779-25520859 1.0000 80 chr1:229714056-229714136 1.0000 80 chr1:36877212-36877292 1.0000 80 chr7:138772096-138772176 1.0000 80 chr1:166270010-166270090 1.0000 80 chr15:83780107-83780187 1.0000 80 chr22:23399881-23399961 1.0000 80 chr7:91699676-91699756 1.0000 80 chr1:109275328-109275408 1.0000 80 chr22:20239596-20239676 1.0000 80 chr17:36362779-36362859 1.0000 80 chr6:28914131-28914211 1.0000 80 chr19:14706477-14706557 1.0000 80 chr22:22054967-22055047 1.0000 80 chr22:50179851-50179931 1.0000 80 chr7:128373390-128373470 1.0000 80 chr19:6556369-6556449 1.0000 80 chr1:78227883-78227963 1.0000 80 chr2:10452665-10452745 1.0000 80 chr19:3154607-3154687 1.0000 80 chr1:33536438-33536518 1.0000 80 chr12:57478891-57478971 1.0000 80 chr1:228400917-228400997 1.0000 80 chr2:91779996-91780076 1.0000 80 chr10:52157129-52157209 1.0000 80 chr5:176807277-176807357 1.0000 80 chr6:168520329-168520409 1.0000 80 chr6:16070678-16070758 1.0000 80 chr6:24695473-24695553 1.0000 80 chr1:23952637-23952717 1.0000 80 chr3:33936612-33936692 1.0000 80 chr1:1384675-1384755 1.0000 80 chr10:49430054-49430134 1.0000 80 chr8:37642682-37642762 1.0000 80 chr1:208095035-208095115 1.0000 80 chr3:186742749-186742829 1.0000 80 chr2:91738344-91738424 1.0000 80 chr16:29751384-29751464 1.0000 80 chr21:36112655-36112735 1.0000 80 chr19:14473486-14473566 1.0000 80 chr16:86835694-86835774 1.0000 80 chr3:46565239-46565319 1.0000 80 chr22:19897046-19897126 1.0000 80 chr1:22610895-22610975 1.0000 80 chr7:127270329-127270409 1.0000 80 chr22:20817182-20817262 1.0000 80 chr7:134993918-134993998 1.0000 80 chr22:23282946-23283026 1.0000 80 chr16:4997063-4997143 1.0000 80 chr2:91737778-91737858 1.0000 80 chr16:85380303-85380383 1.0000 80 chr6:32147026-32147106 1.0000 80 chr8:77912218-77912298 1.0000 80 chr22:22244930-22245010 1.0000 80 chr22:16950544-16950624 1.0000 80 chr22:20717424-20717504 1.0000 80 chr4:80979451-80979531 1.0000 80 chr6:2902771-2902851 1.0000 80 chr8:125966639-125966719 1.0000 80 chr16:66695754-66695834 1.0000 80 chr22:22714553-22714633 1.0000 80 chr11:88057025-88057105 1.0000 80 chr16:86885779-86885859 1.0000 80 chr22:21970010-21970090 1.0000 80 chr7:134043544-134043624 1.0000 80 chr16:46707234-46707314 1.0000 80 chr6:31724031-31724111 1.0000 80 chr16:70899161-70899241 1.0000 80 chr3:195475270-195475350 1.0000 80 chr1:212605085-212605165 1.0000 80 chr15:20864900-20864980 1.0000 80 chrX:154563929-154564009 1.0000 80 chr7:157180512-157180592 1.0000 80 chr19:50947435-50947515 1.0000 80 chr1:6997366-6997446 1.0000 80 chr19:55540304-55540384 1.0000 80 chr2:177680186-177680266 1.0000 80 chr16:81611601-81611681 1.0000 80 chr6:33396711-33396791 1.0000 80 chr7:108281631-108281711 1.0000 80 chr6:15666355-15666435 1.0000 80 chr7:150777081-150777161 1.0000 80 chr10:72300101-72300181 1.0000 80 chr11:5181210-5181290 1.0000 80 chr11:69059047-69059127 1.0000 80 chr12:76175480-76175560 1.0000 80 chr10:135063875-13506395 1.0000 80 chr10:47023333-47023413 1.0000 80 chr5:64989064-64989144 1.0000 80 chr12:113876940-11387702 1.0000 80 chr10:105461037-10546111 1.0000 80 chr1:142832076-142832156 1.0000 80 chr1:167026225-167026305 1.0000 80 chr7:143040831-143040911 1.0000 80 chr22:21185051-21185131 1.0000 80 chr6:170708006-170708086 1.0000 80 chr1:50834691-50834771 1.0000 80 chr6:36953156-36953236 1.0000 80 chr22:21240611-21240691 1.0000 80 chr19:56031146-56031226 1.0000 80 chr1:31312967-31313047 1.0000 80 chr19:3310428-3310508 1.0000 80 chr7:100812688-100812768 1.0000 80 chr1:228698795-228698875 1.0000 80 chr3:36954931-36955011 1.0000 80 chr7:131412403-131412483 1.0000 80 chr22:20239126-20239206 1.0000 80 chr22:23363902-23363982 1.0000 80 chr7:1619565-1619645 1.0000 80 chr21:40285690-40285770 1.0000 80 chr7:105924215-105924295 1.0000 80 chr11:3152645-3152725 1.0000 80 chr1:231182991-231183071 1.0000 80 chr5:96211182-96211262 1.0000 80 chr22:23328369-23328449 1.0000 80 chr7:66359531-66359611 1.0000 80 chr11:65319269-65319349 1.0000 80 chr1:109872821-109872901 1.0000 80 chr11:85699609-85699689 1.0000 80 chr17:17640073-17640153 1.0000 80 chr17:79499254-79499334 1.0000 80 chr15:41477559-41477639 1.0000 80 chr4:87976072-87976152 1.0000 80 chr1:208388920-208389000 1.0000 80 chr7:73299322-73299402 1.0000 80 chr1:224545553-224545633 1.0000 80 chr11:76518023-76518103 1.0000 80 chr5:96520288-96520368 1.0000 80 chr7:100129885-100129965 1.0000 80 chr6:30465243-30465323 1.0000 80 chr9:98186576-98186656 1.0000 80 chr7:155110141-155110221 1.0000 80 chr1:15199539-15199619 1.0000 80 chr7:127835186-127835266 1.0000 80 chr1:28103756-28103836 1.0000 80 chr1:47646528-47646608 1.0000 80 chr4:15164219-15164299 1.0000 80 chr18:9104554-9104634 1.0000 80 chr11:44564068-44564148 1.0000 80 chr6:24597156-24597236 1.0000 80 chr2:91780370-91780450 1.0000 80 chr1:797345-797425 1.0000 80 chr2:152640350-152640430 1.0000 80 chr7:151727841-151727921 1.0000 80 chr19:480504-480584 1.0000 80 chr3:130569313-130569393 1.0000 80 chr6:32153756-32153836 1.0000 80 chr11:85946070-85946150 1.0000 80 chr17:27230670-27230750 1.0000 80 chr19:30559653-30559733 1.0000 80 chr21:11116078-11116158 1.0000 80 chr1:240348297-240348377 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_YBX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/YBX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.234 G 0.225 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.234 G 0.225 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGAWGGAK MEME-1 width = 8 sites = 72 llr = 585 E-value = 6.6e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAWGGAK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:84::a1 pos.-specific C ::1::::: probability G 8a11aa:5 matrix T :::6:::4 bits 2.2 * ** 1.9 * ** 1.7 * *** 1.5 * *** Relative 1.3 ** *** Entropy 1.1 ** *** (11.7 bits) 0.9 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGATGGAG consensus A A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAWGGAK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:85467228-85467308 4 1.14e-05 gat ggatggag agatgattgg chr13:91772368-91772448 13 1.14e-05 AAGAACTTaa ggatggag ggaaggaagg chr1:797345-797425 39 2.53e-05 gatgatagat ggatggat ggatgatagg chr1:15199539-15199619 31 2.53e-05 atgggtggat ggatggat ggatggaagg chr1:208388920-208389000 47 2.53e-05 gtgaatagat ggatggat ggatgatgga chr1:31312967-31313047 17 2.53e-05 gatggatgat ggatggat gggtagatgg chr10:49430054-49430134 17 2.53e-05 atggatagat ggatggat atatgaatag chr19:3154607-3154687 29 2.53e-05 ctggatgggt ggatggat gggtgggtgg chr7:101690592-101690672 55 2.53e-05 GGggatagat ggatggat gattggatag chr8:42529788-42529868 2 2.53e-05 t ggatggat tggatgaatg chr7:148028687-148028767 40 2.53e-05 tggatggagt ggatggat ggaatggacg chr1:21902589-21902669 39 2.53e-05 GCAGGTGGGT GGATGGAT GGCCACGTTG chr1:28470862-28470942 28 2.53e-05 atggatggat ggatggat ggatggatgg chr6:138291178-138291258 1 2.53e-05 . ggatggat gaatggctag chr20:50162176-50162256 70 2.53e-05 atagatgggt ggatggat gga chr6:11313660-11313740 32 2.53e-05 aatgatggat ggatggat atatgagtgg chr21:39619355-39619435 11 2.53e-05 atgcataggt ggatggat gtatggatga chr15:22501677-22501757 66 2.53e-05 atggacgcct ggatggat aggtaga chr9:101339300-101339380 32 2.53e-05 ataggtggat ggatggat ggacagatgg chr10:45912215-45912295 31 2.53e-05 ATATACggat ggatggat tcatggatgg chr20:45820157-45820237 30 2.53e-05 gtggatgcat ggatggat gtagatggat chr19:3322960-3323040 31 2.53e-05 atgggaaggt ggatggat agatggacaa chr8:21921569-21921649 34 2.53e-05 atgcagggac ggatggat ggatggagag chr11:85946070-85946150 29 3.66e-05 aagaaaggag ggaaggag ggagggagga chr4:15164219-15164299 25 3.66e-05 aaggaaggaa ggaaggag aaagggaaag chr11:76518023-76518103 18 3.66e-05 aggaagggag ggaaggag ggaaggaatg chr7:66359531-66359611 23 3.66e-05 AAAGAGGGAG ggaaggag ggaagagagg chr2:177680186-177680266 58 3.66e-05 aaggaaagaa ggaaggag ggaagaaaaa chr7:134993918-134993998 5 3.66e-05 ggag ggaaggag atggaaggaa chr19:14473486-14473566 7 3.66e-05 aaggaa ggaaggag aaagaaaggg chr3:50687598-50687678 60 3.66e-05 GTCTGCCTCA GGAAGGAG AGAATATCTA chr19:480504-480584 38 5.03e-05 aggatgatgg ggaaggat gatggagaac chr7:134269184-134269264 23 5.03e-05 atgaatggaa ggaaggat gggtagaagg chr11:69965761-69965841 2 5.03e-05 t ggaaggat gaatgatgga chr6:28086127-28086207 19 5.03e-05 TAAGAATAAG GGAAGGAT GGGAATAAAC chr18:667098-667178 3 6.40e-05 gg agatggag atggtgatgg chr1:201227535-201227615 33 6.40e-05 tgatggagtg agatggag tgatgaagtg chr1:50937541-50937621 46 6.40e-05 aagaatggaa agatggag gagaagataa chr15:41477559-41477639 29 1.04e-04 ctgttgcctt ggctggag tgcaatggtg chr22:21185051-21185131 53 1.04e-04 ctgttgccca ggctggag tgcagtgatg chr7:157180512-157180592 72 1.04e-04 ctgtcatcca ggctggag t chr7:134043544-134043624 67 1.04e-04 GCAAGTATAA AGATGGAT ACAAAC chr6:2902771-2902851 27 1.04e-04 ctgtctgcca ggctggag tgcagtggcg chr16:85380303-85380383 8 1.04e-04 gacaggt agatggat ggtggatgag chr22:20782610-20782690 9 1.04e-04 gttgccca ggctggag tgcaatggtg chr22:21297544-21297624 24 1.04e-04 ctgtcgccct ggctggag tacaatggca chr22:23282946-23283026 2 1.18e-04 g agaaggag aagaagaagg chr1:33536438-33536518 19 1.18e-04 gaaagaagaa agaaggag gaggaagatg chr1:21469759-21469839 72 1.18e-04 aaggaaagga agaaggag a chr11:85699609-85699689 55 1.79e-04 gaggggaagg ggaaggaa agaatcaggg chr5:64989064-64989144 23 1.79e-04 aaggaaggaa ggaaggaa ggaacgaagg chr3:195475270-195475350 68 1.79e-04 gggaggctga ggcaggag aatcg chr22:20717424-20717504 5 1.79e-04 ctga ggcaggag aatcgcttga chr11:95736081-95736161 28 1.79e-04 ggggatgata agaaggat gatggcgatg chr8:30024529-30024609 38 1.79e-04 agggaggaaa ggaaggaa gggagagaga chr1:28143494-28143574 16 1.79e-04 aggggaggga ggaaggaa aggaaaggga chr1:22031400-22031480 49 2.00e-04 aggaagaaag ggagggag gaaagagaag chr22:21169980-21170060 38 2.00e-04 AGGAAAGAAG GGAGGGAG AAACAGCCGG chr7:131412403-131412483 44 2.10e-04 AAATAACATG GGGAGGAG GAGTGATGGG chr1:226299436-226299516 27 2.45e-04 TGGGCCCGTA GGGAGGAT ATGACAGATT chr17:17640073-17640153 34 2.73e-04 GCATTGCTAG AGATGGAA CATTTCTGGA chr22:17034178-17034258 56 2.73e-04 acatgaatgt agctggag gccattatct chr1:47646528-47646608 39 2.84e-04 CACTGAGCTC AGGTggag gaggagaaag chr19:1768739-1768819 72 2.84e-04 gggaggtgga aggtggag g chr6:30465243-30465323 39 3.48e-04 aaagaaggaa agaaggaa agaaaggaag chr22:22714553-22714633 23 3.85e-04 cttagtcatt aggtggat atgtagattg chr7:138772096-138772176 30 3.85e-04 agacagagaa agagggag agagagagag chr11:65319269-65319349 53 4.08e-04 GGAGGTCAGT GGATGGGT CAGGGATAAG chrX:154563929-154564009 60 4.08e-04 ATTTAAATCA AGGAGGAG CCAAAGGGGT chr22:23399881-23399961 22 4.43e-04 CAGAGCCTGT GGAAGGGG TAGAGCCAGC chr22:23084574-23084654 31 4.77e-04 aaaacaacta ggagggaa cgtagaggac chr16:46707234-46707314 53 5.02e-04 GTAACACAAA GGGAGGAA AAAAAGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAWGGAK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:85467228-85467308 1.1e-05 3_[+1]_69 chr13:91772368-91772448 1.1e-05 12_[+1]_60 chr1:797345-797425 2.5e-05 38_[+1]_34 chr1:15199539-15199619 2.5e-05 30_[+1]_42 chr1:208388920-208389000 2.5e-05 46_[+1]_26 chr1:31312967-31313047 2.5e-05 16_[+1]_56 chr10:49430054-49430134 2.5e-05 16_[+1]_56 chr19:3154607-3154687 2.5e-05 28_[+1]_44 chr7:101690592-101690672 2.5e-05 54_[+1]_18 chr8:42529788-42529868 2.5e-05 1_[+1]_71 chr7:148028687-148028767 2.5e-05 39_[+1]_33 chr1:21902589-21902669 2.5e-05 38_[+1]_34 chr1:28470862-28470942 2.5e-05 27_[+1]_45 chr6:138291178-138291258 2.5e-05 [+1]_72 chr20:50162176-50162256 2.5e-05 69_[+1]_3 chr6:11313660-11313740 2.5e-05 31_[+1]_41 chr21:39619355-39619435 2.5e-05 10_[+1]_62 chr15:22501677-22501757 2.5e-05 65_[+1]_7 chr9:101339300-101339380 2.5e-05 31_[+1]_41 chr10:45912215-45912295 2.5e-05 30_[+1]_42 chr20:45820157-45820237 2.5e-05 29_[+1]_43 chr19:3322960-3323040 2.5e-05 30_[+1]_42 chr8:21921569-21921649 2.5e-05 33_[+1]_39 chr11:85946070-85946150 3.7e-05 28_[+1]_44 chr4:15164219-15164299 3.7e-05 24_[+1]_48 chr11:76518023-76518103 3.7e-05 17_[+1]_55 chr7:66359531-66359611 3.7e-05 22_[+1]_50 chr2:177680186-177680266 3.7e-05 57_[+1]_15 chr7:134993918-134993998 3.7e-05 4_[+1]_68 chr19:14473486-14473566 3.7e-05 6_[+1]_66 chr3:50687598-50687678 3.7e-05 59_[+1]_13 chr19:480504-480584 5e-05 37_[+1]_35 chr7:134269184-134269264 5e-05 22_[+1]_50 chr11:69965761-69965841 5e-05 1_[+1]_71 chr6:28086127-28086207 5e-05 18_[+1]_54 chr18:667098-667178 6.4e-05 2_[+1]_70 chr1:201227535-201227615 6.4e-05 32_[+1]_40 chr1:50937541-50937621 6.4e-05 45_[+1]_27 chr15:41477559-41477639 0.0001 28_[+1]_44 chr22:21185051-21185131 0.0001 52_[+1]_20 chr7:157180512-157180592 0.0001 71_[+1]_1 chr7:134043544-134043624 0.0001 66_[+1]_6 chr6:2902771-2902851 0.0001 26_[+1]_46 chr16:85380303-85380383 0.0001 7_[+1]_65 chr22:20782610-20782690 0.0001 8_[+1]_64 chr22:21297544-21297624 0.0001 23_[+1]_49 chr22:23282946-23283026 0.00012 1_[+1]_71 chr1:33536438-33536518 0.00012 18_[+1]_54 chr1:21469759-21469839 0.00012 71_[+1]_1 chr11:85699609-85699689 0.00018 54_[+1]_18 chr5:64989064-64989144 0.00018 22_[+1]_50 chr3:195475270-195475350 0.00018 67_[+1]_5 chr22:20717424-20717504 0.00018 4_[+1]_68 chr11:95736081-95736161 0.00018 27_[+1]_45 chr8:30024529-30024609 0.00018 37_[+1]_35 chr1:28143494-28143574 0.00018 15_[+1]_57 chr1:22031400-22031480 0.0002 48_[+1]_24 chr22:21169980-21170060 0.0002 37_[+1]_35 chr7:131412403-131412483 0.00021 43_[+1]_29 chr1:226299436-226299516 0.00024 26_[+1]_46 chr17:17640073-17640153 0.00027 33_[+1]_39 chr22:17034178-17034258 0.00027 55_[+1]_17 chr1:47646528-47646608 0.00028 38_[+1]_34 chr19:1768739-1768819 0.00028 71_[+1]_1 chr6:30465243-30465323 0.00035 38_[+1]_34 chr22:22714553-22714633 0.00038 22_[+1]_50 chr7:138772096-138772176 0.00038 29_[+1]_43 chr11:65319269-65319349 0.00041 52_[+1]_20 chrX:154563929-154564009 0.00041 59_[+1]_13 chr22:23399881-23399961 0.00044 21_[+1]_51 chr22:23084574-23084654 0.00048 30_[+1]_42 chr16:46707234-46707314 0.0005 52_[+1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAWGGAK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAWGGAK width=8 seqs=72 chr16:85467228-85467308 ( 4) GGATGGAG 1 chr13:91772368-91772448 ( 13) GGATGGAG 1 chr1:797345-797425 ( 39) GGATGGAT 1 chr1:15199539-15199619 ( 31) GGATGGAT 1 chr1:208388920-208389000 ( 47) GGATGGAT 1 chr1:31312967-31313047 ( 17) GGATGGAT 1 chr10:49430054-49430134 ( 17) GGATGGAT 1 chr19:3154607-3154687 ( 29) GGATGGAT 1 chr7:101690592-101690672 ( 55) GGATGGAT 1 chr8:42529788-42529868 ( 2) GGATGGAT 1 chr7:148028687-148028767 ( 40) GGATGGAT 1 chr1:21902589-21902669 ( 39) GGATGGAT 1 chr1:28470862-28470942 ( 28) GGATGGAT 1 chr6:138291178-138291258 ( 1) GGATGGAT 1 chr20:50162176-50162256 ( 70) GGATGGAT 1 chr6:11313660-11313740 ( 32) GGATGGAT 1 chr21:39619355-39619435 ( 11) GGATGGAT 1 chr15:22501677-22501757 ( 66) GGATGGAT 1 chr9:101339300-101339380 ( 32) GGATGGAT 1 chr10:45912215-45912295 ( 31) GGATGGAT 1 chr20:45820157-45820237 ( 30) GGATGGAT 1 chr19:3322960-3323040 ( 31) GGATGGAT 1 chr8:21921569-21921649 ( 34) GGATGGAT 1 chr11:85946070-85946150 ( 29) GGAAGGAG 1 chr4:15164219-15164299 ( 25) GGAAGGAG 1 chr11:76518023-76518103 ( 18) GGAAGGAG 1 chr7:66359531-66359611 ( 23) GGAAGGAG 1 chr2:177680186-177680266 ( 58) GGAAGGAG 1 chr7:134993918-134993998 ( 5) GGAAGGAG 1 chr19:14473486-14473566 ( 7) GGAAGGAG 1 chr3:50687598-50687678 ( 60) GGAAGGAG 1 chr19:480504-480584 ( 38) GGAAGGAT 1 chr7:134269184-134269264 ( 23) GGAAGGAT 1 chr11:69965761-69965841 ( 2) GGAAGGAT 1 chr6:28086127-28086207 ( 19) GGAAGGAT 1 chr18:667098-667178 ( 3) AGATGGAG 1 chr1:201227535-201227615 ( 33) AGATGGAG 1 chr1:50937541-50937621 ( 46) AGATGGAG 1 chr15:41477559-41477639 ( 29) GGCTGGAG 1 chr22:21185051-21185131 ( 53) GGCTGGAG 1 chr7:157180512-157180592 ( 72) GGCTGGAG 1 chr7:134043544-134043624 ( 67) AGATGGAT 1 chr6:2902771-2902851 ( 27) GGCTGGAG 1 chr16:85380303-85380383 ( 8) AGATGGAT 1 chr22:20782610-20782690 ( 9) GGCTGGAG 1 chr22:21297544-21297624 ( 24) GGCTGGAG 1 chr22:23282946-23283026 ( 2) AGAAGGAG 1 chr1:33536438-33536518 ( 19) AGAAGGAG 1 chr1:21469759-21469839 ( 72) AGAAGGAG 1 chr11:85699609-85699689 ( 55) GGAAGGAA 1 chr5:64989064-64989144 ( 23) GGAAGGAA 1 chr3:195475270-195475350 ( 68) GGCAGGAG 1 chr22:20717424-20717504 ( 5) GGCAGGAG 1 chr11:95736081-95736161 ( 28) AGAAGGAT 1 chr8:30024529-30024609 ( 38) GGAAGGAA 1 chr1:28143494-28143574 ( 16) GGAAGGAA 1 chr1:22031400-22031480 ( 49) GGAGGGAG 1 chr22:21169980-21170060 ( 38) GGAGGGAG 1 chr7:131412403-131412483 ( 44) GGGAGGAG 1 chr1:226299436-226299516 ( 27) GGGAGGAT 1 chr17:17640073-17640153 ( 34) AGATGGAA 1 chr22:17034178-17034258 ( 56) AGCTGGAG 1 chr1:47646528-47646608 ( 39) AGGTGGAG 1 chr19:1768739-1768819 ( 72) AGGTGGAG 1 chr6:30465243-30465323 ( 39) AGAAGGAA 1 chr22:22714553-22714633 ( 23) AGGTGGAT 1 chr7:138772096-138772176 ( 30) AGAGGGAG 1 chr11:65319269-65319349 ( 53) GGATGGGT 1 chrX:154563929-154564009 ( 60) AGGAGGAG 1 chr22:23399881-23399961 ( 22) GGAAGGGG 1 chr22:23084574-23084654 ( 31) GGAGGGAA 1 chr16:46707234-46707314 ( 53) GGGAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAWGGAK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 6.6e-037 -19 -1281 177 -1281 -1281 -1281 215 -1281 153 -90 -121 -1281 53 -1281 -202 103 -1281 -1281 215 -1281 -1281 -1281 215 -1281 185 -1281 -301 -1281 -128 -1281 103 66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAWGGAK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 6.6e-037 0.236111 0.000000 0.763889 0.000000 0.000000 0.000000 1.000000 0.000000 0.777778 0.125000 0.097222 0.000000 0.388889 0.000000 0.055556 0.555556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.972222 0.000000 0.027778 0.000000 0.111111 0.000000 0.458333 0.430556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAWGGAK MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GA[TA]GGA[GT] -------------------------------------------------------------------------------- Time 5.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CMTCCATC MEME-2 width = 8 sites = 86 llr = 646 E-value = 3.4e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMTCCATC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :42::7:: pos.-specific C 861793:a probability G :::::::: matrix T 2:731:a: bits 2.2 * 1.9 ** 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.1 ** ***** (10.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCATC consensus AAT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTCCATC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:44564068-44564148 7 1.40e-05 ccgcca cctccatc gtcatcacca chr16:4997063-4997143 67 1.40e-05 tccctccatt cctccatc catcca chr16:85381833-85381913 43 1.40e-05 cccacctgcc cctccatc tatccatcca chr11:75979657-75979737 48 1.40e-05 atccatccat cctccatc catccatcca chr1:244598892-244598972 63 1.40e-05 ttctcttcct cctccatc ctcctcttcc chr4:40297250-40297330 58 1.40e-05 tccatctgtg cctccatc tccatctctg chr7:143040831-143040911 59 2.62e-05 tttctctctc cctccctc tttccctctc chr7:108281631-108281711 22 2.62e-05 ttcctttctc cctccctc cttccctccc chr2:91779996-91780076 19 2.62e-05 cttcctcttc cctccctc cctattccct chr1:109275328-109275408 13 2.62e-05 tctttccctc cctccctc tcttttctct chr12:122927865-12292794 38 2.62e-05 tctccctctc cctccctc cttgcttcct chr19:30559653-30559733 50 4.23e-05 cacacccatt catccatc tacctaccca chr6:24597156-24597236 56 4.23e-05 ccctcccatc catccatc catctttcta chr11:3152645-3152725 18 4.23e-05 tccatcaatc catccatc catccatcta chr10:105461037-10546111 56 4.23e-05 tccattcatc catccatc catccaccat chr12:113876940-11387702 45 4.23e-05 tccattcatt catccatc catTTCTCTA chr19:50947435-50947515 49 4.23e-05 tccactcatc catccatc catccatcca chr1:22610895-22610975 2 4.23e-05 c catccatc catccatcca chr3:46565239-46565319 39 4.23e-05 tttatccaac catccatc cacccatctg chr21:36112655-36112735 62 4.23e-05 CCACATAATT catccatc cacccattta chr16:29751384-29751464 11 4.23e-05 tccatccatc catccatc tattcatcca chr15:83780107-83780187 49 4.23e-05 attcacccat catccatc catccattca chr19:5681570-5681650 68 4.23e-05 tccgtccatc catccatc catcc chr21:46576099-46576179 20 4.23e-05 atctgtcatc catccatc catccaccca chr20:44973563-44973643 48 4.23e-05 tctacccatc catccatc aacctatcca chr12:132649180-13264926 8 4.23e-05 agccatc catccatc atccattcat chr19:2440727-2440807 57 4.23e-05 atctatccat catccatc catctactca chr19:6209847-6209927 8 4.23e-05 ttcctac catccatc ctttccatcc chr20:48939389-48939469 24 4.23e-05 accttccatt catccatc tgtccatcAG chr1:31172805-31172885 45 4.23e-05 tccatccatc catccatc catctatcca chr17:35088825-35088905 19 4.23e-05 ctcatccccc catccatc tgcctatcca chr2:9792429-9792509 12 4.23e-05 tccatccatc catccatc cattcatcca chr7:73049868-73049948 71 4.23e-05 tctatccatc catccatc tc chr12:125575048-12557512 49 4.23e-05 attatccatt catccatc catcttccat chr6:147836571-147836651 2 4.23e-05 c catccatc catccatcca chr2:91780370-91780450 31 5.86e-05 ctcttctcct ccttcatc cttccttcct chr16:81611601-81611681 9 5.86e-05 caccatca ccttcatc accaccatca chr17:56553493-56553573 33 5.86e-05 tccttcctcc ccttcatc atcatcttca chr22:20239126-20239206 21 7.25e-05 atcactatca ccaccatc atcttcatca chr11:69059047-69059127 49 7.25e-05 tatcatcaga ccaccatc atcaccatca chr16:86885779-86885859 60 7.25e-05 accatgatca ccaccatc aacatcatca chr6:168520329-168520409 3 7.25e-05 ta ccaccatc atcttcaaca chr10:134241052-13424113 19 7.25e-05 atcacaatca ccaccatc atcatcatca chr10:121186905-12118698 23 7.25e-05 aacagcgtca ccaccatc agcagcatca chr19:3310428-3310508 54 1.03e-04 tctccatcta tctccatc tctctcttct chr19:6556369-6556449 13 1.03e-04 tatctctata tctccatc tctatctatc chr13:114919111-11491919 50 1.03e-04 atctccatca tctccatc attccatcac chr17:27230670-27230750 59 1.17e-04 tcccttcctt ccttcctc ccttccttcc chr7:73299322-73299402 66 1.17e-04 ttccttcctt ccttcCTC TCTCTCC chr1:231182991-231183071 72 1.17e-04 ctctcctttc ccttcctc c chr6:36953156-36953236 41 1.17e-04 GGGCCCCCAA CCTTCCTC CCCATCTCTT chr12:57478891-57478971 49 1.17e-04 acttgacttc ccttcctc ctagaatttt chr1:229714056-229714136 13 1.17e-04 ctttctcttt ccttcctc ccttcctccc chr13:45639592-45639672 69 1.17e-04 ccttcctctt ccttcctc tctt chr1:240348297-240348377 48 1.90e-04 cccttctctt tctccctc ctataccttc chr1:228698795-228698875 18 1.90e-04 tctgtctcta tctccctc tctctgtcac chr7:116070370-116070450 7 1.90e-04 GTtctc tctccctc tctctctctc chr7:155110141-155110221 67 2.25e-04 attattatca ccatcatc gtcatc chr1:6997366-6997446 3 2.25e-04 ca ccatcatc accatcacca chr2:10452665-10452745 8 2.25e-04 accatca ccatcatc actgtcatcc chr1:32937425-32937505 19 2.25e-04 atcaccagta ccatcatc atcattacca chr6:105848277-105848357 1 2.25e-04 . TATCCATC TGTTGATGGT chr1:212605085-212605165 31 2.41e-04 cgggcatcct cattcctc cgcatttatg chr5:96520288-96520368 34 2.74e-04 taacctactc tcttcatc ctgttcccac chr22:20239596-20239676 10 3.01e-04 tcctcatca tcaccatc gtcctcatca chr3:33978447-33978527 1 3.01e-04 . TCACCATC CCTTCCATGG chr22:22054967-22055047 39 3.31e-04 tcaggtgatc cacccatc ttggcctccc chr7:100129885-100129965 49 3.96e-04 acagagtaag actccatc tcaatacaca chr1:142832076-142832156 33 3.96e-04 acacagtgtg actccatc aaaaaaagaa chrX:154563929-154564009 32 4.27e-04 TCGTTTTCCT TCTTCCTC GTGATCTAAC chr17:41318135-41318215 3 4.27e-04 cc tcttcctc tctctctgtg chr7:151727841-151727921 36 5.07e-04 tctctcactt cctctctc tgtgtctctc chr6:29592005-29592085 33 5.07e-04 CTCTCCTGCA CACCCCTC CTTTGGTATT chr1:208095035-208095115 72 6.20e-04 aagtggctcc ccctcctc t chr19:15291259-15291339 64 7.69e-04 TGACAGACAC ACACCATC CCGGCCAGT chr2:152640350-152640430 30 8.37e-04 tctgcccacc tcatcctc ccaaagtgtt chr7:150777081-150777161 2 8.89e-04 T CACTCCTC ATTTAGGGGG chr1:228400917-228400997 29 8.89e-04 ctccccagcc cactcctc taccctgcac chr7:1619565-1619645 69 9.41e-04 tgtctgtgtg ccactctc tgtc chr2:91737778-91737858 10 9.41e-04 catttcatc tcctcatc tcatcatttc chr22:22768618-22768698 6 9.41e-04 tgttt catttatc ttttgtattt chr22:22639613-22639693 4 9.41e-04 atc tcctcatc tcatcatttc chr9:44993180-44993260 23 9.41e-04 tgtttctttc ccactctc tGtgggtttg chr10:72300101-72300181 14 1.07e-03 TGTGTGTGGA AAACCATC TTTAGGGGAG chr1:1384675-1384755 60 1.07e-03 tgactctgtc tctctctc tctctgactc chr22:17034178-17034258 65 1.13e-03 tagctggagg ccattatc ttttttaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTCCATC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:44564068-44564148 1.4e-05 6_[+2]_66 chr16:4997063-4997143 1.4e-05 66_[+2]_6 chr16:85381833-85381913 1.4e-05 42_[+2]_30 chr11:75979657-75979737 1.4e-05 47_[+2]_25 chr1:244598892-244598972 1.4e-05 62_[+2]_10 chr4:40297250-40297330 1.4e-05 57_[+2]_15 chr7:143040831-143040911 2.6e-05 58_[+2]_14 chr7:108281631-108281711 2.6e-05 21_[+2]_51 chr2:91779996-91780076 2.6e-05 18_[+2]_54 chr1:109275328-109275408 2.6e-05 12_[+2]_60 chr12:122927865-12292794 2.6e-05 37_[+2]_35 chr19:30559653-30559733 4.2e-05 49_[+2]_23 chr6:24597156-24597236 4.2e-05 55_[+2]_17 chr11:3152645-3152725 4.2e-05 17_[+2]_55 chr10:105461037-10546111 4.2e-05 55_[+2]_17 chr12:113876940-11387702 4.2e-05 44_[+2]_28 chr19:50947435-50947515 4.2e-05 48_[+2]_24 chr1:22610895-22610975 4.2e-05 1_[+2]_71 chr3:46565239-46565319 4.2e-05 38_[+2]_34 chr21:36112655-36112735 4.2e-05 61_[+2]_11 chr16:29751384-29751464 4.2e-05 10_[+2]_62 chr15:83780107-83780187 4.2e-05 48_[+2]_24 chr19:5681570-5681650 4.2e-05 67_[+2]_5 chr21:46576099-46576179 4.2e-05 19_[+2]_53 chr20:44973563-44973643 4.2e-05 47_[+2]_25 chr12:132649180-13264926 4.2e-05 7_[+2]_65 chr19:2440727-2440807 4.2e-05 56_[+2]_16 chr19:6209847-6209927 4.2e-05 7_[+2]_65 chr20:48939389-48939469 4.2e-05 23_[+2]_49 chr1:31172805-31172885 4.2e-05 44_[+2]_28 chr17:35088825-35088905 4.2e-05 18_[+2]_54 chr2:9792429-9792509 4.2e-05 11_[+2]_61 chr7:73049868-73049948 4.2e-05 70_[+2]_2 chr12:125575048-12557512 4.2e-05 48_[+2]_24 chr6:147836571-147836651 4.2e-05 1_[+2]_71 chr2:91780370-91780450 5.9e-05 30_[+2]_42 chr16:81611601-81611681 5.9e-05 8_[+2]_64 chr17:56553493-56553573 5.9e-05 32_[+2]_40 chr22:20239126-20239206 7.3e-05 20_[+2]_52 chr11:69059047-69059127 7.3e-05 48_[+2]_24 chr16:86885779-86885859 7.3e-05 59_[+2]_13 chr6:168520329-168520409 7.3e-05 2_[+2]_70 chr10:134241052-13424113 7.3e-05 18_[+2]_54 chr10:121186905-12118698 7.3e-05 22_[+2]_50 chr19:3310428-3310508 0.0001 53_[+2]_19 chr19:6556369-6556449 0.0001 12_[+2]_60 chr13:114919111-11491919 0.0001 49_[+2]_23 chr17:27230670-27230750 0.00012 58_[+2]_14 chr7:73299322-73299402 0.00012 65_[+2]_7 chr1:231182991-231183071 0.00012 71_[+2]_1 chr6:36953156-36953236 0.00012 40_[+2]_32 chr12:57478891-57478971 0.00012 48_[+2]_24 chr1:229714056-229714136 0.00012 12_[+2]_60 chr13:45639592-45639672 0.00012 68_[+2]_4 chr1:240348297-240348377 0.00019 47_[+2]_25 chr1:228698795-228698875 0.00019 17_[+2]_55 chr7:116070370-116070450 0.00019 6_[+2]_66 chr7:155110141-155110221 0.00023 66_[+2]_6 chr1:6997366-6997446 0.00023 2_[+2]_70 chr2:10452665-10452745 0.00023 7_[+2]_65 chr1:32937425-32937505 0.00023 18_[+2]_54 chr6:105848277-105848357 0.00023 [+2]_72 chr1:212605085-212605165 0.00024 30_[+2]_42 chr5:96520288-96520368 0.00027 33_[+2]_39 chr22:20239596-20239676 0.0003 9_[+2]_63 chr3:33978447-33978527 0.0003 [+2]_72 chr22:22054967-22055047 0.00033 38_[+2]_34 chr7:100129885-100129965 0.0004 48_[+2]_24 chr1:142832076-142832156 0.0004 32_[+2]_40 chrX:154563929-154564009 0.00043 31_[+2]_41 chr17:41318135-41318215 0.00043 2_[+2]_70 chr7:151727841-151727921 0.00051 35_[+2]_37 chr6:29592005-29592085 0.00051 32_[+2]_40 chr1:208095035-208095115 0.00062 71_[+2]_1 chr19:15291259-15291339 0.00077 63_[+2]_9 chr2:152640350-152640430 0.00084 29_[+2]_43 chr7:150777081-150777161 0.00089 1_[+2]_71 chr1:228400917-228400997 0.00089 28_[+2]_44 chr7:1619565-1619645 0.00094 68_[+2]_4 chr2:91737778-91737858 0.00094 9_[+2]_63 chr22:22768618-22768698 0.00094 5_[+2]_67 chr22:22639613-22639693 0.00094 3_[+2]_69 chr9:44993180-44993260 0.00094 22_[+2]_50 chr10:72300101-72300181 0.0011 13_[+2]_59 chr1:1384675-1384755 0.0011 59_[+2]_13 chr22:17034178-17034258 0.0011 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTCCATC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMTCCATC width=8 seqs=86 chr11:44564068-44564148 ( 7) CCTCCATC 1 chr16:4997063-4997143 ( 67) CCTCCATC 1 chr16:85381833-85381913 ( 43) CCTCCATC 1 chr11:75979657-75979737 ( 48) CCTCCATC 1 chr1:244598892-244598972 ( 63) CCTCCATC 1 chr4:40297250-40297330 ( 58) CCTCCATC 1 chr7:143040831-143040911 ( 59) CCTCCCTC 1 chr7:108281631-108281711 ( 22) CCTCCCTC 1 chr2:91779996-91780076 ( 19) CCTCCCTC 1 chr1:109275328-109275408 ( 13) CCTCCCTC 1 chr12:122927865-12292794 ( 38) CCTCCCTC 1 chr19:30559653-30559733 ( 50) CATCCATC 1 chr6:24597156-24597236 ( 56) CATCCATC 1 chr11:3152645-3152725 ( 18) CATCCATC 1 chr10:105461037-10546111 ( 56) CATCCATC 1 chr12:113876940-11387702 ( 45) CATCCATC 1 chr19:50947435-50947515 ( 49) CATCCATC 1 chr1:22610895-22610975 ( 2) CATCCATC 1 chr3:46565239-46565319 ( 39) CATCCATC 1 chr21:36112655-36112735 ( 62) CATCCATC 1 chr16:29751384-29751464 ( 11) CATCCATC 1 chr15:83780107-83780187 ( 49) CATCCATC 1 chr19:5681570-5681650 ( 68) CATCCATC 1 chr21:46576099-46576179 ( 20) CATCCATC 1 chr20:44973563-44973643 ( 48) CATCCATC 1 chr12:132649180-13264926 ( 8) CATCCATC 1 chr19:2440727-2440807 ( 57) CATCCATC 1 chr19:6209847-6209927 ( 8) CATCCATC 1 chr20:48939389-48939469 ( 24) CATCCATC 1 chr1:31172805-31172885 ( 45) CATCCATC 1 chr17:35088825-35088905 ( 19) CATCCATC 1 chr2:9792429-9792509 ( 12) CATCCATC 1 chr7:73049868-73049948 ( 71) CATCCATC 1 chr12:125575048-12557512 ( 49) CATCCATC 1 chr6:147836571-147836651 ( 2) CATCCATC 1 chr2:91780370-91780450 ( 31) CCTTCATC 1 chr16:81611601-81611681 ( 9) CCTTCATC 1 chr17:56553493-56553573 ( 33) CCTTCATC 1 chr22:20239126-20239206 ( 21) CCACCATC 1 chr11:69059047-69059127 ( 49) CCACCATC 1 chr16:86885779-86885859 ( 60) CCACCATC 1 chr6:168520329-168520409 ( 3) CCACCATC 1 chr10:134241052-13424113 ( 19) CCACCATC 1 chr10:121186905-12118698 ( 23) CCACCATC 1 chr19:3310428-3310508 ( 54) TCTCCATC 1 chr19:6556369-6556449 ( 13) TCTCCATC 1 chr13:114919111-11491919 ( 50) TCTCCATC 1 chr17:27230670-27230750 ( 59) CCTTCCTC 1 chr7:73299322-73299402 ( 66) CCTTCCTC 1 chr1:231182991-231183071 ( 72) CCTTCCTC 1 chr6:36953156-36953236 ( 41) CCTTCCTC 1 chr12:57478891-57478971 ( 49) CCTTCCTC 1 chr1:229714056-229714136 ( 13) CCTTCCTC 1 chr13:45639592-45639672 ( 69) CCTTCCTC 1 chr1:240348297-240348377 ( 48) TCTCCCTC 1 chr1:228698795-228698875 ( 18) TCTCCCTC 1 chr7:116070370-116070450 ( 7) TCTCCCTC 1 chr7:155110141-155110221 ( 67) CCATCATC 1 chr1:6997366-6997446 ( 3) CCATCATC 1 chr2:10452665-10452745 ( 8) CCATCATC 1 chr1:32937425-32937505 ( 19) CCATCATC 1 chr6:105848277-105848357 ( 1) TATCCATC 1 chr1:212605085-212605165 ( 31) CATTCCTC 1 chr5:96520288-96520368 ( 34) TCTTCATC 1 chr22:20239596-20239676 ( 10) TCACCATC 1 chr3:33978447-33978527 ( 1) TCACCATC 1 chr22:22054967-22055047 ( 39) CACCCATC 1 chr7:100129885-100129965 ( 49) ACTCCATC 1 chr1:142832076-142832156 ( 33) ACTCCATC 1 chrX:154563929-154564009 ( 32) TCTTCCTC 1 chr17:41318135-41318215 ( 3) TCTTCCTC 1 chr7:151727841-151727921 ( 36) CCTCTCTC 1 chr6:29592005-29592085 ( 33) CACCCCTC 1 chr1:208095035-208095115 ( 72) CCCTCCTC 1 chr19:15291259-15291339 ( 64) ACACCATC 1 chr2:152640350-152640430 ( 30) TCATCCTC 1 chr7:150777081-150777161 ( 2) CACTCCTC 1 chr1:228400917-228400997 ( 29) CACTCCTC 1 chr7:1619565-1619645 ( 69) CCACTCTC 1 chr2:91737778-91737858 ( 10) TCCTCATC 1 chr22:22768618-22768698 ( 6) CATTTATC 1 chr22:22639613-22639693 ( 4) TCCTCATC 1 chr9:44993180-44993260 ( 23) CCACTCTC 1 chr10:72300101-72300181 ( 14) AAACCATC 1 chr1:1384675-1384755 ( 60) TCTCTCTC 1 chr22:17034178-17034258 ( 65) CCATTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTCCATC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.73268 E= 3.4e-031 -253 171 -1307 -55 47 142 -1307 -1307 -36 -152 -1307 138 -1307 158 -1307 15 -1307 199 -1307 -196 135 42 -1307 -1307 -1307 -1307 -1307 188 -1307 210 -1307 -1307 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTCCATC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 3.4e-031 0.046512 0.767442 0.000000 0.186047 0.372093 0.627907 0.000000 0.000000 0.209302 0.081395 0.000000 0.709302 0.000000 0.697674 0.000000 0.302326 0.000000 0.930233 0.000000 0.069767 0.686047 0.313953 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMTCCATC MEME-2 regular expression -------------------------------------------------------------------------------- C[CA][TA][CT]C[AC]TC -------------------------------------------------------------------------------- Time 8.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCATCCW MEME-3 width = 8 sites = 74 llr = 570 E-value = 6.9e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCATCCW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::7::14 pos.-specific C :aa:199: probability G 1:::2::: matrix T 8::381:6 bits 2.2 ** 1.9 ** 1.7 ** * 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ****** (11.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCATCCT consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCCW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:75979657-75979737 66 1.63e-05 catccatcca tccatcct ctatcca chr1:244598892-244598972 46 1.63e-05 ctcctctacc tccatcct tctcttcctc chr19:30559653-30559733 28 3.25e-05 cacacattca tccatcca ctcacacacc chr6:24597156-24597236 18 3.25e-05 cttctacttt tccatcca tccatccatc chr11:3152645-3152725 64 3.25e-05 cattcgtcca tccatcca tccatctac chr10:105461037-10546111 8 3.25e-05 ccattca tccatcca tcatccatcc chr12:113876940-11387702 4 3.25e-05 ata tccatcca ttcatctata chr19:50947435-50947515 63 3.25e-05 catccatcca tccatcca cttaaccatc chr16:4997063-4997143 21 3.25e-05 ccttccttcc tccatcca tccattcatc chr1:22610895-22610975 48 3.25e-05 cacccatcta tccatcca tccattcatc chr21:36112655-36112735 12 3.25e-05 cacctaccca tccatcca ttcaaccatc chr16:29751384-29751464 73 3.25e-05 catttattca tccatcca chr15:83780107-83780187 9 3.25e-05 atccatca tccatcca tctattcacc chr20:44973563-44973643 70 3.25e-05 tatccatcta tccatcca tta chr16:85381833-85381913 14 3.25e-05 ctgtccatca tccatcca tccatcatcc chr12:132649180-13264926 44 3.25e-05 catccacaca tccatcca tctacccatc chr19:2440727-2440807 2 3.25e-05 a tccatcca tctatccact chr19:6209847-6209927 19 3.25e-05 atccatcctt tccatcca tccacccatc chr1:31172805-31172885 59 3.25e-05 catccatcta tccatcca tcccttcatc chr2:9792429-9792509 2 3.25e-05 a tccatcca tccatccatc chr7:73049868-73049948 8 3.25e-05 ccatcca tccatcca tccatccatc chr12:125575048-12557512 13 3.25e-05 cttccatctc tccatcca ctcatctatc chr6:147836571-147836651 20 3.25e-05 catccatcca tccatcca tccatccatc chr17:27230670-27230750 70 4.89e-05 cttcctccct tccttcct tcc chr2:91780370-91780450 53 4.89e-05 cttcctctct tccttcct ctAGCCTTCC chr7:73299322-73299402 53 4.89e-05 tctctctcct tccttcct tccttccttc chr1:231182991-231183071 46 4.89e-05 tttcttccac tccttcct tcttttctct chr7:108281631-108281711 9 4.89e-05 tccttcat tccttcct ttctccctcc chr5:176807277-176807357 48 4.89e-05 ttttttctct tccttcct tctttccttc chr1:229714056-229714136 73 4.89e-05 ttccttcgct tccttcct chr17:56553493-56553573 23 4.89e-05 catccttctc tccttcct ccccttcatc chr13:45639592-45639672 58 4.89e-05 cgttcctcct tccttcct cttccttcct chr12:122927865-12292794 52 4.89e-05 cctccttgct tccttcct ttccttcctt chr20:48939389-48939469 65 4.89e-05 tatccacctc tccttcct tccaacct chr17:35088825-35088905 45 6.52e-05 cattctttca tccttcca CGCGCCTTCC chr7:100129885-100129965 26 7.86e-05 gccactgcat tccagcct gagtgacaga chr1:142832076-142832156 10 7.86e-05 ccactgcac tccagcct ggatgacaca chr15:20864900-20864980 18 7.86e-05 gccactgcac tccagcct agacaacaga chr16:66695754-66695834 49 7.86e-05 accactgcac tccagcct gggcaacaga chr6:24695473-24695553 31 7.86e-05 accactgcac tccagcct gggtgacaga chr1:228400917-228400997 56 7.86e-05 ccctctcctt tccagcct cccagcccct chr17:36362779-36362859 24 7.86e-05 accactgcac tccagcct gggcgacaga chr7:128114277-128114357 17 7.86e-05 gccactgcac tccagcct gggcgacaga chr21:46576099-46576179 70 9.20e-05 ccatcatcta tccagcca tcc chr11:44564068-44564148 66 1.08e-04 aaacaccatt accatcct catcacc chr22:20239126-20239206 68 1.08e-04 catcctcaac accatcct caaca chr22:20239596-20239676 66 1.08e-04 tatcatcatc accatcct catccct chr1:224545553-224545633 56 1.43e-04 GTTGTATTGC ACCATCCA GGTTTAAGTA chr1:21543202-21543282 38 1.43e-04 acaggtgtgc tccatcat gcctggctaa chr13:114919111-11491919 11 1.43e-04 cactccatac tccatcat caccatctcc chr6:31724031-31724111 25 1.89e-04 caagtgattc tcctgcct cagcctcctg chr1:109872821-109872901 34 3.14e-04 gacctcgtga tccaccca cctcagcctc chr3:46565239-46565319 69 3.14e-04 cacccatcta tccaccca tcta chr19:5681570-5681650 18 3.14e-04 catccatctg tccaccca tccatctatt chr16:70899161-70899241 44 3.65e-04 tgtccaggaa gccttcct tgactctctt chr6:28914131-28914211 58 3.65e-04 gaccaaggag gccttcct gataaggagg chr22:21297544-21297624 70 3.92e-04 tgcaacttct gccttcca gat chr1:212605085-212605165 11 4.61e-04 cccttgatcc tccagcaa gccgggcatc chr22:23399881-23399961 34 4.61e-04 AAGGGGTAGA GCCAGCCT GCTGTGTTAA chr7:155110141-155110221 12 5.13e-04 catcactatt accatcat aatcattgtc chr11:69059047-69059127 13 5.13e-04 catcatcacc accatcat caccatcatc chr16:81611601-81611681 64 5.13e-04 tatcaccatc accatcat caccatcac chr16:86885779-86885859 20 5.13e-04 tatcactatc accatcat caccaccatc chr6:168520329-168520409 22 5.13e-04 tcttcaacat accatcat caccaccatc chr2:91779996-91780076 3 5.13e-04 tt tcctttct tcctcttccc chr1:32937425-32937505 51 5.13e-04 ctccagtatc accatcat cagtaccatc chr1:144595671-144595751 38 5.13e-04 cggatatgtg tcctttct acgatatata chr2:91737778-91737858 29 5.62e-04 catcatttcc tcctttca ttacaacatt chr6:29592005-29592085 71 5.62e-04 CCACCTTACC TCCTTTCA GC chr22:22639613-22639693 23 5.62e-04 catcatttcc tcctttca acatttcatc chr2:10452665-10452745 25 6.05e-04 cactgtcatc cccatcct catcatcatc chr10:121186905-12118698 61 6.05e-04 cagcatcacc gccatcat cagcatcacc chr12:76101532-76101612 31 8.03e-04 tcagttctca accttcat ttacttgacc chr6:105848277-105848357 39 9.01e-04 TCGCCTTCTT GCCACCCT ACAAACAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCCW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:75979657-75979737 1.6e-05 65_[+3]_7 chr1:244598892-244598972 1.6e-05 45_[+3]_27 chr19:30559653-30559733 3.2e-05 27_[+3]_45 chr6:24597156-24597236 3.2e-05 17_[+3]_55 chr11:3152645-3152725 3.2e-05 63_[+3]_9 chr10:105461037-10546111 3.2e-05 7_[+3]_65 chr12:113876940-11387702 3.2e-05 3_[+3]_69 chr19:50947435-50947515 3.2e-05 62_[+3]_10 chr16:4997063-4997143 3.2e-05 20_[+3]_52 chr1:22610895-22610975 3.2e-05 47_[+3]_25 chr21:36112655-36112735 3.2e-05 11_[+3]_61 chr16:29751384-29751464 3.2e-05 72_[+3] chr15:83780107-83780187 3.2e-05 8_[+3]_64 chr20:44973563-44973643 3.2e-05 69_[+3]_3 chr16:85381833-85381913 3.2e-05 13_[+3]_59 chr12:132649180-13264926 3.2e-05 43_[+3]_29 chr19:2440727-2440807 3.2e-05 1_[+3]_71 chr19:6209847-6209927 3.2e-05 18_[+3]_54 chr1:31172805-31172885 3.2e-05 58_[+3]_14 chr2:9792429-9792509 3.2e-05 1_[+3]_71 chr7:73049868-73049948 3.2e-05 7_[+3]_65 chr12:125575048-12557512 3.2e-05 12_[+3]_60 chr6:147836571-147836651 3.2e-05 19_[+3]_53 chr17:27230670-27230750 4.9e-05 69_[+3]_3 chr2:91780370-91780450 4.9e-05 52_[+3]_20 chr7:73299322-73299402 4.9e-05 52_[+3]_20 chr1:231182991-231183071 4.9e-05 45_[+3]_27 chr7:108281631-108281711 4.9e-05 8_[+3]_64 chr5:176807277-176807357 4.9e-05 47_[+3]_25 chr1:229714056-229714136 4.9e-05 72_[+3] chr17:56553493-56553573 4.9e-05 22_[+3]_50 chr13:45639592-45639672 4.9e-05 57_[+3]_15 chr12:122927865-12292794 4.9e-05 51_[+3]_21 chr20:48939389-48939469 4.9e-05 64_[+3]_8 chr17:35088825-35088905 6.5e-05 44_[+3]_28 chr7:100129885-100129965 7.9e-05 25_[+3]_47 chr1:142832076-142832156 7.9e-05 9_[+3]_63 chr15:20864900-20864980 7.9e-05 17_[+3]_55 chr16:66695754-66695834 7.9e-05 48_[+3]_24 chr6:24695473-24695553 7.9e-05 30_[+3]_42 chr1:228400917-228400997 7.9e-05 55_[+3]_17 chr17:36362779-36362859 7.9e-05 23_[+3]_49 chr7:128114277-128114357 7.9e-05 16_[+3]_56 chr21:46576099-46576179 9.2e-05 69_[+3]_3 chr11:44564068-44564148 0.00011 65_[+3]_7 chr22:20239126-20239206 0.00011 67_[+3]_5 chr22:20239596-20239676 0.00011 65_[+3]_7 chr1:224545553-224545633 0.00014 55_[+3]_17 chr1:21543202-21543282 0.00014 37_[+3]_35 chr13:114919111-11491919 0.00014 10_[+3]_62 chr6:31724031-31724111 0.00019 24_[+3]_48 chr1:109872821-109872901 0.00031 33_[+3]_39 chr3:46565239-46565319 0.00031 68_[+3]_4 chr19:5681570-5681650 0.00031 17_[+3]_55 chr16:70899161-70899241 0.00037 43_[+3]_29 chr6:28914131-28914211 0.00037 57_[+3]_15 chr22:21297544-21297624 0.00039 69_[+3]_3 chr1:212605085-212605165 0.00046 10_[+3]_62 chr22:23399881-23399961 0.00046 33_[+3]_39 chr7:155110141-155110221 0.00051 11_[+3]_61 chr11:69059047-69059127 0.00051 12_[+3]_60 chr16:81611601-81611681 0.00051 63_[+3]_9 chr16:86885779-86885859 0.00051 19_[+3]_53 chr6:168520329-168520409 0.00051 21_[+3]_51 chr2:91779996-91780076 0.00051 2_[+3]_70 chr1:32937425-32937505 0.00051 50_[+3]_22 chr1:144595671-144595751 0.00051 37_[+3]_35 chr2:91737778-91737858 0.00056 28_[+3]_44 chr6:29592005-29592085 0.00056 70_[+3]_2 chr22:22639613-22639693 0.00056 22_[+3]_50 chr2:10452665-10452745 0.0006 24_[+3]_48 chr10:121186905-12118698 0.0006 60_[+3]_12 chr12:76101532-76101612 0.0008 30_[+3]_42 chr6:105848277-105848357 0.0009 38_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCCW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCATCCW width=8 seqs=74 chr11:75979657-75979737 ( 66) TCCATCCT 1 chr1:244598892-244598972 ( 46) TCCATCCT 1 chr19:30559653-30559733 ( 28) TCCATCCA 1 chr6:24597156-24597236 ( 18) TCCATCCA 1 chr11:3152645-3152725 ( 64) TCCATCCA 1 chr10:105461037-10546111 ( 8) TCCATCCA 1 chr12:113876940-11387702 ( 4) TCCATCCA 1 chr19:50947435-50947515 ( 63) TCCATCCA 1 chr16:4997063-4997143 ( 21) TCCATCCA 1 chr1:22610895-22610975 ( 48) TCCATCCA 1 chr21:36112655-36112735 ( 12) TCCATCCA 1 chr16:29751384-29751464 ( 73) TCCATCCA 1 chr15:83780107-83780187 ( 9) TCCATCCA 1 chr20:44973563-44973643 ( 70) TCCATCCA 1 chr16:85381833-85381913 ( 14) TCCATCCA 1 chr12:132649180-13264926 ( 44) TCCATCCA 1 chr19:2440727-2440807 ( 2) TCCATCCA 1 chr19:6209847-6209927 ( 19) TCCATCCA 1 chr1:31172805-31172885 ( 59) TCCATCCA 1 chr2:9792429-9792509 ( 2) TCCATCCA 1 chr7:73049868-73049948 ( 8) TCCATCCA 1 chr12:125575048-12557512 ( 13) TCCATCCA 1 chr6:147836571-147836651 ( 20) TCCATCCA 1 chr17:27230670-27230750 ( 70) TCCTTCCT 1 chr2:91780370-91780450 ( 53) TCCTTCCT 1 chr7:73299322-73299402 ( 53) TCCTTCCT 1 chr1:231182991-231183071 ( 46) TCCTTCCT 1 chr7:108281631-108281711 ( 9) TCCTTCCT 1 chr5:176807277-176807357 ( 48) TCCTTCCT 1 chr1:229714056-229714136 ( 73) TCCTTCCT 1 chr17:56553493-56553573 ( 23) TCCTTCCT 1 chr13:45639592-45639672 ( 58) TCCTTCCT 1 chr12:122927865-12292794 ( 52) TCCTTCCT 1 chr20:48939389-48939469 ( 65) TCCTTCCT 1 chr17:35088825-35088905 ( 45) TCCTTCCA 1 chr7:100129885-100129965 ( 26) TCCAGCCT 1 chr1:142832076-142832156 ( 10) TCCAGCCT 1 chr15:20864900-20864980 ( 18) TCCAGCCT 1 chr16:66695754-66695834 ( 49) TCCAGCCT 1 chr6:24695473-24695553 ( 31) TCCAGCCT 1 chr1:228400917-228400997 ( 56) TCCAGCCT 1 chr17:36362779-36362859 ( 24) TCCAGCCT 1 chr7:128114277-128114357 ( 17) TCCAGCCT 1 chr21:46576099-46576179 ( 70) TCCAGCCA 1 chr11:44564068-44564148 ( 66) ACCATCCT 1 chr22:20239126-20239206 ( 68) ACCATCCT 1 chr22:20239596-20239676 ( 66) ACCATCCT 1 chr1:224545553-224545633 ( 56) ACCATCCA 1 chr1:21543202-21543282 ( 38) TCCATCAT 1 chr13:114919111-11491919 ( 11) TCCATCAT 1 chr6:31724031-31724111 ( 25) TCCTGCCT 1 chr1:109872821-109872901 ( 34) TCCACCCA 1 chr3:46565239-46565319 ( 69) TCCACCCA 1 chr19:5681570-5681650 ( 18) TCCACCCA 1 chr16:70899161-70899241 ( 44) GCCTTCCT 1 chr6:28914131-28914211 ( 58) GCCTTCCT 1 chr22:21297544-21297624 ( 70) GCCTTCCA 1 chr1:212605085-212605165 ( 11) TCCAGCAA 1 chr22:23399881-23399961 ( 34) GCCAGCCT 1 chr7:155110141-155110221 ( 12) ACCATCAT 1 chr11:69059047-69059127 ( 13) ACCATCAT 1 chr16:81611601-81611681 ( 64) ACCATCAT 1 chr16:86885779-86885859 ( 20) ACCATCAT 1 chr6:168520329-168520409 ( 22) ACCATCAT 1 chr2:91779996-91780076 ( 3) TCCTTTCT 1 chr1:32937425-32937505 ( 51) ACCATCAT 1 chr1:144595671-144595751 ( 38) TCCTTTCT 1 chr2:91737778-91737858 ( 29) TCCTTTCA 1 chr6:29592005-29592085 ( 71) TCCTTTCA 1 chr22:22639613-22639693 ( 23) TCCTTTCA 1 chr2:10452665-10452745 ( 25) CCCATCCT 1 chr10:121186905-12118698 ( 61) GCCATCAT 1 chr12:76101532-76101612 ( 31) ACCTTCAT 1 chr6:105848277-105848357 ( 39) GCCACCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCCW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.81613 E= 6.9e-025 -86 -411 -147 148 -1285 210 -1285 -1285 -1285 210 -1285 -1285 138 -1285 -1285 13 -1285 -211 -47 153 -1285 199 -1285 -201 -86 186 -1285 -1285 68 -1285 -1285 106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCCW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 6.9e-025 0.148649 0.013514 0.081081 0.756757 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.702703 0.000000 0.000000 0.297297 0.000000 0.054054 0.162162 0.783784 0.000000 0.932432 0.000000 0.067568 0.148649 0.851351 0.000000 0.000000 0.432432 0.000000 0.000000 0.567568 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCCW MEME-3 regular expression -------------------------------------------------------------------------------- TCC[AT]TCC[TA] -------------------------------------------------------------------------------- Time 12.68 secs. ******************************************************************************** ******************************************************************************** MOTIF AWGGATGG MEME-4 width = 8 sites = 57 llr = 467 E-value = 1.6e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWGGATGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 841:a3:: pos.-specific C :::::::: probability G 226a::aa matrix T :43::7:: bits 2.2 * ** 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 * ** ** Entropy 1.1 * ***** (11.8 bits) 0.9 * ****** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGGATGG consensus GAT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWGGATGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:15199539-15199619 17 1.38e-05 gggtggatgg atggatgg gtggatggat chr1:208388920-208389000 68 1.38e-05 tgatggatgg atggatgg atgga chr10:49430054-49430134 3 1.38e-05 gg atggatgg atagatggat chr19:3154607-3154687 58 1.38e-05 tggatgatgg atggatgg atagatgggt chr7:134269184-134269264 1 1.38e-05 . atggatgg aaggatgaat chr11:69965761-69965841 22 1.38e-05 atgatggatg atggatgg gtggaggggt chr7:148028687-148028767 29 1.38e-05 gatggagtcg atggatgg agtggatgga chr1:28470862-28470942 38 1.38e-05 ggatggatgg atggatgg ttagagggat chr6:138291178-138291258 70 1.38e-05 ggatggaagg atggatgg aag chr20:50162176-50162256 33 1.38e-05 agatggatgc atggatgg aagatgggtg chr6:11313660-11313740 62 1.38e-05 agatagatgg atggatgg cagatgaatg chr21:39619355-39619435 65 1.38e-05 agatggataa atggatgg ttggatag chr9:101339300-101339380 14 1.38e-05 ggatggaaag atggatgg ataggtggat chr10:45912215-45912295 41 1.38e-05 ggatggattc atggatgg tggatggatg chr20:45820157-45820237 42 1.38e-05 atggatgtag atggatgg atggatagat chr19:3322960-3323040 17 1.38e-05 ggatgggtga atggatgg gaaggtggat chr8:21921569-21921649 8 1.38e-05 tggagag atggatgg atgcagggat chr7:134993918-134993998 71 2.75e-05 aaggagaaga aaggatgg aa chr7:101690592-101690672 73 2.75e-05 gattggatag aaggatgg chr15:22501677-22501757 8 2.75e-05 tagatgg aaggatgg gtagatagat chr7:151539570-151539650 20 3.90e-05 tagggatggt agggatgg tagtgatggt chr8:42529788-42529868 29 5.27e-05 gtatggataa atggaagg atagatggat chr11:85946070-85946150 56 8.30e-05 aaagaaacaa aaggaagg aaggagaaag chr4:15164219-15164299 15 8.30e-05 aaggagaagg aaggaagg aaggaaggag chr11:76518023-76518103 36 8.30e-05 ggaaggaatg aaggaagg aaggaaggaa chr7:66359531-66359611 53 8.30e-05 ggaggaagga aaggaagg aaggaagaaa chr19:56031146-56031226 27 8.30e-05 tgatggtcac attgatgg tgacggtgat chr5:64989064-64989144 13 8.30e-05 GAGAGAGagg aaggaagg aaggaaggaa chr2:177680186-177680266 16 8.30e-05 aggagggaaa aaggaagg aaaggaggaa chr16:86835694-86835774 33 8.30e-05 gaaggtgatg attgatgg tgatggggta chr19:14473486-14473566 53 8.30e-05 tgaaagaaag aaggaagg agaagaaaga chr13:91772368-91772448 27 8.30e-05 ggagggaagg aaggaagg aaggagggaa chr1:28143494-28143574 1 8.30e-05 . aaggaagg ggagggagga chr1:31312967-31313047 43 1.11e-04 ggatgagtgg gtggatgg gtggattctt chr16:85380303-85380383 29 1.11e-04 ggatgagtgg gtggatgg tggacaggtg chr11:69871693-69871773 20 1.11e-04 tgatgatgat aatgatgg tggtgatgat chr2:131482136-131482216 58 1.11e-04 tgatgatgat aatgatgg tggtgatggt chr17:79499254-79499334 37 1.48e-04 tgatgatgat agtgatgg tggtgatggt chr7:131412403-131412483 53 1.48e-04 GGGGAGGAGG AGTGATGG GGCAGAAAGA chr19:14706477-14706557 10 1.48e-04 ggtagaggt agtgatgg cgttgttgtg chr1:201227535-201227615 21 1.48e-04 agtgagatgg agtgatgg agtgagatgg chr1:797345-797425 22 1.90e-04 agagatgatg atagatgg atgatagatg chr16:85467228-85467308 71 1.90e-04 gagcagaagg atagatgg gc chr19:1768739-1768819 20 2.60e-04 gaagaaaaca gaggaagg gggtgagtaa chr6:105848277-105848357 10 2.60e-04 TATCCATCT GTTGATGG TCTGGTCAGA chr19:480504-480584 17 2.74e-04 gatggggaag gatgatgg ggaaggatga chr1:23952637-23952717 42 2.74e-04 tggtgatgat gatgatgG Ggatgatgat chr11:95736081-95736161 12 2.74e-04 ggataaggaa gatgatgg ggatgataag chr1:30811829-30811909 52 2.74e-04 tgatggtgat gatgatgg tggtggtggt chr1:201639867-201639947 67 2.74e-04 gtgatgtttt gatgatgg tggtgg chr12:53038916-53038996 52 3.01e-04 ATCCTCCTCC AGAGATGG ACCCTCCCTT chr6:32153756-32153836 2 3.27e-04 T GGGGAAGG GAAAGTGGGG chr11:85699609-85699689 47 3.27e-04 gagaaaaaga ggggaagg ggaaggaaag chr6:30465243-30465323 29 3.55e-04 gaaagaaagg aaagaagg aaagaaggaa chr22:23282946-23283026 32 3.55e-04 gaggaggagg aaagaagg aagaagaaga chr18:667098-667178 25 3.55e-04 tgatggtgat ggtgatgg agatggtgat chr8:30024529-30024609 5 3.55e-04 acag aaagaagg agaggaaagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWGGATGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:15199539-15199619 1.4e-05 16_[+4]_56 chr1:208388920-208389000 1.4e-05 67_[+4]_5 chr10:49430054-49430134 1.4e-05 2_[+4]_70 chr19:3154607-3154687 1.4e-05 57_[+4]_15 chr7:134269184-134269264 1.4e-05 [+4]_72 chr11:69965761-69965841 1.4e-05 21_[+4]_51 chr7:148028687-148028767 1.4e-05 28_[+4]_44 chr1:28470862-28470942 1.4e-05 37_[+4]_35 chr6:138291178-138291258 1.4e-05 69_[+4]_3 chr20:50162176-50162256 1.4e-05 32_[+4]_40 chr6:11313660-11313740 1.4e-05 61_[+4]_11 chr21:39619355-39619435 1.4e-05 64_[+4]_8 chr9:101339300-101339380 1.4e-05 13_[+4]_59 chr10:45912215-45912295 1.4e-05 40_[+4]_32 chr20:45820157-45820237 1.4e-05 41_[+4]_31 chr19:3322960-3323040 1.4e-05 16_[+4]_56 chr8:21921569-21921649 1.4e-05 7_[+4]_65 chr7:134993918-134993998 2.8e-05 70_[+4]_2 chr7:101690592-101690672 2.8e-05 72_[+4] chr15:22501677-22501757 2.8e-05 7_[+4]_65 chr7:151539570-151539650 3.9e-05 19_[+4]_53 chr8:42529788-42529868 5.3e-05 28_[+4]_44 chr11:85946070-85946150 8.3e-05 55_[+4]_17 chr4:15164219-15164299 8.3e-05 14_[+4]_58 chr11:76518023-76518103 8.3e-05 35_[+4]_37 chr7:66359531-66359611 8.3e-05 52_[+4]_20 chr19:56031146-56031226 8.3e-05 26_[+4]_46 chr5:64989064-64989144 8.3e-05 12_[+4]_60 chr2:177680186-177680266 8.3e-05 15_[+4]_57 chr16:86835694-86835774 8.3e-05 32_[+4]_40 chr19:14473486-14473566 8.3e-05 52_[+4]_20 chr13:91772368-91772448 8.3e-05 26_[+4]_46 chr1:28143494-28143574 8.3e-05 [+4]_72 chr1:31312967-31313047 0.00011 42_[+4]_30 chr16:85380303-85380383 0.00011 28_[+4]_44 chr11:69871693-69871773 0.00011 19_[+4]_53 chr2:131482136-131482216 0.00011 57_[+4]_15 chr17:79499254-79499334 0.00015 36_[+4]_36 chr7:131412403-131412483 0.00015 52_[+4]_20 chr19:14706477-14706557 0.00015 9_[+4]_63 chr1:201227535-201227615 0.00015 20_[+4]_52 chr1:797345-797425 0.00019 21_[+4]_51 chr16:85467228-85467308 0.00019 70_[+4]_2 chr19:1768739-1768819 0.00026 19_[+4]_53 chr6:105848277-105848357 0.00026 9_[+4]_63 chr19:480504-480584 0.00027 16_[+4]_56 chr1:23952637-23952717 0.00027 41_[+4]_31 chr11:95736081-95736161 0.00027 11_[+4]_61 chr1:30811829-30811909 0.00027 51_[+4]_21 chr1:201639867-201639947 0.00027 66_[+4]_6 chr12:53038916-53038996 0.0003 51_[+4]_21 chr6:32153756-32153836 0.00033 1_[+4]_71 chr11:85699609-85699689 0.00033 46_[+4]_26 chr6:30465243-30465323 0.00036 28_[+4]_44 chr22:23282946-23283026 0.00036 31_[+4]_41 chr18:667098-667178 0.00036 24_[+4]_48 chr8:30024529-30024609 0.00036 4_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWGGATGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWGGATGG width=8 seqs=57 chr1:15199539-15199619 ( 17) ATGGATGG 1 chr1:208388920-208389000 ( 68) ATGGATGG 1 chr10:49430054-49430134 ( 3) ATGGATGG 1 chr19:3154607-3154687 ( 58) ATGGATGG 1 chr7:134269184-134269264 ( 1) ATGGATGG 1 chr11:69965761-69965841 ( 22) ATGGATGG 1 chr7:148028687-148028767 ( 29) ATGGATGG 1 chr1:28470862-28470942 ( 38) ATGGATGG 1 chr6:138291178-138291258 ( 70) ATGGATGG 1 chr20:50162176-50162256 ( 33) ATGGATGG 1 chr6:11313660-11313740 ( 62) ATGGATGG 1 chr21:39619355-39619435 ( 65) ATGGATGG 1 chr9:101339300-101339380 ( 14) ATGGATGG 1 chr10:45912215-45912295 ( 41) ATGGATGG 1 chr20:45820157-45820237 ( 42) ATGGATGG 1 chr19:3322960-3323040 ( 17) ATGGATGG 1 chr8:21921569-21921649 ( 8) ATGGATGG 1 chr7:134993918-134993998 ( 71) AAGGATGG 1 chr7:101690592-101690672 ( 73) AAGGATGG 1 chr15:22501677-22501757 ( 8) AAGGATGG 1 chr7:151539570-151539650 ( 20) AGGGATGG 1 chr8:42529788-42529868 ( 29) ATGGAAGG 1 chr11:85946070-85946150 ( 56) AAGGAAGG 1 chr4:15164219-15164299 ( 15) AAGGAAGG 1 chr11:76518023-76518103 ( 36) AAGGAAGG 1 chr7:66359531-66359611 ( 53) AAGGAAGG 1 chr19:56031146-56031226 ( 27) ATTGATGG 1 chr5:64989064-64989144 ( 13) AAGGAAGG 1 chr2:177680186-177680266 ( 16) AAGGAAGG 1 chr16:86835694-86835774 ( 33) ATTGATGG 1 chr19:14473486-14473566 ( 53) AAGGAAGG 1 chr13:91772368-91772448 ( 27) AAGGAAGG 1 chr1:28143494-28143574 ( 1) AAGGAAGG 1 chr1:31312967-31313047 ( 43) GTGGATGG 1 chr16:85380303-85380383 ( 29) GTGGATGG 1 chr11:69871693-69871773 ( 20) AATGATGG 1 chr2:131482136-131482216 ( 58) AATGATGG 1 chr17:79499254-79499334 ( 37) AGTGATGG 1 chr7:131412403-131412483 ( 53) AGTGATGG 1 chr19:14706477-14706557 ( 10) AGTGATGG 1 chr1:201227535-201227615 ( 21) AGTGATGG 1 chr1:797345-797425 ( 22) ATAGATGG 1 chr16:85467228-85467308 ( 71) ATAGATGG 1 chr19:1768739-1768819 ( 20) GAGGAAGG 1 chr6:105848277-105848357 ( 10) GTTGATGG 1 chr19:480504-480584 ( 17) GATGATGG 1 chr1:23952637-23952717 ( 42) GATGATGG 1 chr11:95736081-95736161 ( 12) GATGATGG 1 chr1:30811829-30811909 ( 52) GATGATGG 1 chr1:201639867-201639947 ( 67) GATGATGG 1 chr12:53038916-53038996 ( 52) AGAGATGG 1 chr6:32153756-32153836 ( 2) GGGGAAGG 1 chr11:85699609-85699689 ( 47) GGGGAAGG 1 chr6:30465243-30465323 ( 29) AAAGAAGG 1 chr22:23282946-23283026 ( 32) AAAGAAGG 1 chr18:667098-667178 ( 25) GGTGATGG 1 chr8:30024529-30024609 ( 5) AAAGAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWGGATGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 1.6e-021 155 -1248 -9 -1248 58 -1248 -51 69 -136 -1248 149 -5 -1248 -1248 215 -1248 189 -1248 -1248 -1248 6 -1248 -1248 140 -1248 -1248 215 -1248 -1248 -1248 215 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWGGATGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.6e-021 0.789474 0.000000 0.210526 0.000000 0.403509 0.000000 0.157895 0.438596 0.105263 0.000000 0.631579 0.263158 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.280702 0.000000 0.000000 0.719298 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWGGATGG MEME-4 regular expression -------------------------------------------------------------------------------- [AG][TA][GT]GA[TA]GG -------------------------------------------------------------------------------- Time 16.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CCATCCMT MEME-5 width = 8 sites = 80 llr = 575 E-value = 1.0e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATCCMT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::7::33: pos.-specific C 7a::a652 probability G :::::::: matrix T 3:3a:128 bits 2.2 * * 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.1 ** ** * (10.4 bits) 0.9 ***** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCATCCCT consensus T T AAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCCMT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:15291259-15291339 34 1.40e-05 AGCACACACA CCATCCCT GCTGTCTCAC chr1:31172805-31172885 16 1.40e-05 attcctctat ccatccct tcatccatcc chr6:24597156-24597236 31 3.02e-05 atccatccat ccatccat ccatccaccc chr10:105461037-10546111 43 3.02e-05 catccatcat ccatccat tcatccatcc chr12:113876940-11387702 32 3.02e-05 atccatccac ccatccat tcattcatcc chr19:50947435-50947515 12 3.02e-05 atctgcttaa ccatccat ccactcatgc chr1:22610895-22610975 13 3.02e-05 atccatccat ccatccat ccatccatcc chr21:36112655-36112735 25 3.02e-05 atccattcaa ccatccat ccatccaCAC chr16:29751384-29751464 58 3.02e-05 atctatccat ccatccat ttattcatcc chr20:44973563-44973643 24 3.02e-05 acccattcat ccatccat catatatcta chr16:85381833-85381913 73 3.02e-05 cactgttcat ccatccat chr12:132649180-13264926 57 3.02e-05 atccatctac ccatccat ctgttctgtg chr19:2440727-2440807 23 3.02e-05 atccactcat ccatccat catctatcta chr2:9792429-9792509 31 3.02e-05 attcatccat ccatccat ccacctatcc chr11:75979657-75979737 40 3.02e-05 catcatccat ccatccat cctccatcca chr7:73049868-73049948 17 3.02e-05 atccatccat ccatccat ccacccatct chr6:147836571-147836651 29 3.02e-05 atccatccat ccatccat ccattcattt chr17:27230670-27230750 46 6.06e-05 ttccttcctt ccttccct tccttccttc chr2:91780370-91780450 65 6.06e-05 cttcctctAG CCTTCCCT CCACTAtc chr1:231182991-231183071 2 6.06e-05 t ccttccct ccttcctccc chr16:4997063-4997143 54 6.06e-05 cttcatccct tcatccct ccattcctcc chr2:91779996-91780076 39 6.06e-05 tattccctcc ccttccct tttctctccc chr19:6209847-6209927 60 6.06e-05 ctccttccgt ccttccct ccctcctttc chr12:125575048-12557512 70 6.06e-05 cttccattca tcATCCCT CAT chr7:155110141-155110221 1 7.68e-05 . ccatcact attaccatca chr22:20239126-20239206 9 7.68e-05 cctcatta ccatcact atcaccacca chr16:86885779-86885859 3 7.68e-05 ca ccatcact atcactatca chr2:10452665-10452745 44 7.68e-05 atcatcatca ccatcact gtcatcatca chr10:134241052-13424113 61 7.68e-05 attatcatca ccatcact atcactgtca chr1:224545553-224545633 5 1.56e-04 CTTC CCATCTCT TGACAAAGCA chr19:3310428-3310508 19 1.56e-04 atctctctct ccatctct ctatctgcct chr6:36953156-36953236 50 1.56e-04 ACCTTCCTCC CCATCTCT TCACCCAAAC chr15:83780107-83780187 64 1.56e-04 atccatccat tcatccat catctatcc chr19:5681570-5681650 7 1.56e-04 ttccac tcatccat ctgtccaccc chr3:33978447-33978527 9 1.56e-04 TCACCATC CCTTCCAT GGCCTGTATC chr20:48939389-48939469 15 1.56e-04 atctattcaa ccttccat tcatccatct chr4:40297250-40297330 67 1.56e-04 gcctccatct ccatctct gcctcc chr1:212605085-212605165 73 1.92e-04 accaaagtgc tcttccct chr12:122927865-12292794 71 1.92e-04 tccttccttt tcttccct tc chr4:145059336-145059416 5 1.92e-04 ttgc tcttccct ctgccttctg chr1:32937425-32937505 70 2.27e-04 agtaccatca tcatcact atc chr19:30559653-30559733 13 2.41e-04 catttatcac ccatccac acattcatcc chr11:3152645-3152725 45 2.41e-04 acccattcat ccatccac ccattcgtcc chr1:240348297-240348377 61 2.67e-04 ccctcctata ccttcccc ttctctttct chr16:81611601-81611681 24 2.67e-04 atcaccacca tcatcccc attaccacta chr17:35088825-35088905 10 2.67e-04 cccatccgc tcatcccc ccatccatct chr1:6997366-6997446 18 3.16e-04 atcaccatca ccatcacc attcaccact chr5:176807277-176807357 65 3.16e-04 ttctttcctt ccttcCtt tcttcttt chr22:20239596-20239676 28 3.16e-04 gtcctcatca ccatcacc gccatcagca chr1:229714056-229714136 61 3.16e-04 ttccttccgt ccttcctt cgcttccttc chr21:46576099-46576179 53 3.16e-04 ccatcatcac ccatcacc catcatctat chr17:56553493-56553573 12 3.16e-04 Atcttctcct tcatcctt ctctccttcc chr6:29592005-29592085 16 3.16e-04 GGAGCCTTAC CCATCACC TCTCCTGCAC chr11:69059047-69059127 61 3.35e-04 accatcatca ccatcatt accaccacca chr4:80979451-80979531 61 3.35e-04 CCACTCAATC CCATCATT ACTTTTGCAG chr6:168520329-168520409 50 3.35e-04 ttcactacta ccatcatt atcttcacca chr13:114919111-11491919 27 3.35e-04 atcaccatct ccatcatt ccatcatctc chr3:46565239-46565319 2 3.54e-04 t ccatctat ccacccattt chr2:10447727-10447807 63 4.81e-04 TCTTTCTCTG TCTTCACT TGAAATCTCT chr22:22851769-22851849 67 4.81e-04 GAGTCAAGTT TCTTCACT AAAGCT chr11:44564068-44564148 31 5.38e-04 accatagcaa ccatctcc atcatcacca chr22:23328369-23328449 20 5.38e-04 ttgttctttc ccatctcc ccagcttctt chr7:143040831-143040911 24 5.38e-04 ctctctctct ccctccct ctttccctct chr7:108281631-108281711 33 5.38e-04 ctccctcctt ccctccct ctctctcttt chr12:53038916-53038996 61 5.38e-04 CAGAGATGGA CCCTCCCT TAGAGCCACC chr7:150777081-150777161 58 5.87e-04 GCTCTGGGCC TCTTCCCC ACCCCGCCCC chr7:128373390-128373470 70 5.87e-04 agagtccagc tcttcccc ttt chr12:49246698-49246778 10 5.87e-04 TTGCTTCTT TCTTCCCC CAGATTCCCC chr10:121186905-12118698 8 5.87e-04 atcactg ccatcaac agcgtcacca chr22:22813335-22813415 49 6.36e-04 aactcacatc tcttcctt atttggaaag chr2:91737778-91737858 18 6.77e-04 tctcctcatc tcatcatt tcctcctttc chr2:91738344-91738424 60 6.77e-04 tctcatcatt tcatcatt tcatctcgtt chr22:22639613-22639693 12 6.77e-04 tctcctcatc tcatcatt tcctcctttc chr11:5181210-5181290 71 7.18e-04 ttatttctcc ccttctat ta chr7:1619565-1619645 26 7.67e-04 tgggtctttc tcttctct ttctctgcct chr1:208095035-208095115 35 7.67e-04 ttgccgaatt tcttctct cccctgctca chr1:244598892-244598972 28 7.67e-04 tcttcctcct tcatcctc ctcctctacc chr22:22714553-22714633 50 8.96e-04 gtgaagattt tcttccac tcggtgggct chr5:96520288-96520368 57 9.86e-04 cccactcccc tcatcttt cccagtctgt chr22:22768618-22768698 58 1.03e-03 tctgctctga tcttcatt atttcttttc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCCMT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:15291259-15291339 1.4e-05 33_[+5]_39 chr1:31172805-31172885 1.4e-05 15_[+5]_57 chr6:24597156-24597236 3e-05 30_[+5]_42 chr10:105461037-10546111 3e-05 42_[+5]_30 chr12:113876940-11387702 3e-05 31_[+5]_41 chr19:50947435-50947515 3e-05 11_[+5]_61 chr1:22610895-22610975 3e-05 12_[+5]_60 chr21:36112655-36112735 3e-05 24_[+5]_48 chr16:29751384-29751464 3e-05 57_[+5]_15 chr20:44973563-44973643 3e-05 23_[+5]_49 chr16:85381833-85381913 3e-05 72_[+5] chr12:132649180-13264926 3e-05 56_[+5]_16 chr19:2440727-2440807 3e-05 22_[+5]_50 chr2:9792429-9792509 3e-05 30_[+5]_42 chr11:75979657-75979737 3e-05 39_[+5]_33 chr7:73049868-73049948 3e-05 16_[+5]_56 chr6:147836571-147836651 3e-05 28_[+5]_44 chr17:27230670-27230750 6.1e-05 45_[+5]_27 chr2:91780370-91780450 6.1e-05 64_[+5]_8 chr1:231182991-231183071 6.1e-05 1_[+5]_71 chr16:4997063-4997143 6.1e-05 53_[+5]_19 chr2:91779996-91780076 6.1e-05 38_[+5]_34 chr19:6209847-6209927 6.1e-05 59_[+5]_13 chr12:125575048-12557512 6.1e-05 69_[+5]_3 chr7:155110141-155110221 7.7e-05 [+5]_72 chr22:20239126-20239206 7.7e-05 8_[+5]_64 chr16:86885779-86885859 7.7e-05 2_[+5]_70 chr2:10452665-10452745 7.7e-05 43_[+5]_29 chr10:134241052-13424113 7.7e-05 60_[+5]_12 chr1:224545553-224545633 0.00016 4_[+5]_68 chr19:3310428-3310508 0.00016 18_[+5]_54 chr6:36953156-36953236 0.00016 49_[+5]_23 chr15:83780107-83780187 0.00016 63_[+5]_9 chr19:5681570-5681650 0.00016 6_[+5]_66 chr3:33978447-33978527 0.00016 8_[+5]_64 chr20:48939389-48939469 0.00016 14_[+5]_58 chr4:40297250-40297330 0.00016 66_[+5]_6 chr1:212605085-212605165 0.00019 72_[+5] chr12:122927865-12292794 0.00019 70_[+5]_2 chr4:145059336-145059416 0.00019 4_[+5]_68 chr1:32937425-32937505 0.00023 69_[+5]_3 chr19:30559653-30559733 0.00024 12_[+5]_60 chr11:3152645-3152725 0.00024 44_[+5]_28 chr1:240348297-240348377 0.00027 60_[+5]_12 chr16:81611601-81611681 0.00027 23_[+5]_49 chr17:35088825-35088905 0.00027 9_[+5]_63 chr1:6997366-6997446 0.00032 17_[+5]_55 chr5:176807277-176807357 0.00032 64_[+5]_8 chr22:20239596-20239676 0.00032 27_[+5]_45 chr1:229714056-229714136 0.00032 60_[+5]_12 chr21:46576099-46576179 0.00032 52_[+5]_20 chr17:56553493-56553573 0.00032 11_[+5]_61 chr6:29592005-29592085 0.00032 15_[+5]_57 chr11:69059047-69059127 0.00033 60_[+5]_12 chr4:80979451-80979531 0.00033 60_[+5]_12 chr6:168520329-168520409 0.00033 49_[+5]_23 chr13:114919111-11491919 0.00033 26_[+5]_46 chr3:46565239-46565319 0.00035 1_[+5]_71 chr2:10447727-10447807 0.00048 62_[+5]_10 chr22:22851769-22851849 0.00048 66_[+5]_6 chr11:44564068-44564148 0.00054 30_[+5]_42 chr22:23328369-23328449 0.00054 19_[+5]_53 chr7:143040831-143040911 0.00054 23_[+5]_49 chr7:108281631-108281711 0.00054 32_[+5]_40 chr12:53038916-53038996 0.00054 60_[+5]_12 chr7:150777081-150777161 0.00059 57_[+5]_15 chr7:128373390-128373470 0.00059 69_[+5]_3 chr12:49246698-49246778 0.00059 9_[+5]_63 chr10:121186905-12118698 0.00059 7_[+5]_65 chr22:22813335-22813415 0.00064 48_[+5]_24 chr2:91737778-91737858 0.00068 17_[+5]_55 chr2:91738344-91738424 0.00068 59_[+5]_13 chr22:22639613-22639693 0.00068 11_[+5]_61 chr11:5181210-5181290 0.00072 70_[+5]_2 chr7:1619565-1619645 0.00077 25_[+5]_47 chr1:208095035-208095115 0.00077 34_[+5]_38 chr1:244598892-244598972 0.00077 27_[+5]_45 chr22:22714553-22714633 0.0009 49_[+5]_23 chr5:96520288-96520368 0.00099 56_[+5]_16 chr22:22768618-22768698 0.001 57_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCCMT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATCCMT width=8 seqs=80 chr19:15291259-15291339 ( 34) CCATCCCT 1 chr1:31172805-31172885 ( 16) CCATCCCT 1 chr6:24597156-24597236 ( 31) CCATCCAT 1 chr10:105461037-10546111 ( 43) CCATCCAT 1 chr12:113876940-11387702 ( 32) CCATCCAT 1 chr19:50947435-50947515 ( 12) CCATCCAT 1 chr1:22610895-22610975 ( 13) CCATCCAT 1 chr21:36112655-36112735 ( 25) CCATCCAT 1 chr16:29751384-29751464 ( 58) CCATCCAT 1 chr20:44973563-44973643 ( 24) CCATCCAT 1 chr16:85381833-85381913 ( 73) CCATCCAT 1 chr12:132649180-13264926 ( 57) CCATCCAT 1 chr19:2440727-2440807 ( 23) CCATCCAT 1 chr2:9792429-9792509 ( 31) CCATCCAT 1 chr11:75979657-75979737 ( 40) CCATCCAT 1 chr7:73049868-73049948 ( 17) CCATCCAT 1 chr6:147836571-147836651 ( 29) CCATCCAT 1 chr17:27230670-27230750 ( 46) CCTTCCCT 1 chr2:91780370-91780450 ( 65) CCTTCCCT 1 chr1:231182991-231183071 ( 2) CCTTCCCT 1 chr16:4997063-4997143 ( 54) TCATCCCT 1 chr2:91779996-91780076 ( 39) CCTTCCCT 1 chr19:6209847-6209927 ( 60) CCTTCCCT 1 chr12:125575048-12557512 ( 70) TCATCCCT 1 chr7:155110141-155110221 ( 1) CCATCACT 1 chr22:20239126-20239206 ( 9) CCATCACT 1 chr16:86885779-86885859 ( 3) CCATCACT 1 chr2:10452665-10452745 ( 44) CCATCACT 1 chr10:134241052-13424113 ( 61) CCATCACT 1 chr1:224545553-224545633 ( 5) CCATCTCT 1 chr19:3310428-3310508 ( 19) CCATCTCT 1 chr6:36953156-36953236 ( 50) CCATCTCT 1 chr15:83780107-83780187 ( 64) TCATCCAT 1 chr19:5681570-5681650 ( 7) TCATCCAT 1 chr3:33978447-33978527 ( 9) CCTTCCAT 1 chr20:48939389-48939469 ( 15) CCTTCCAT 1 chr4:40297250-40297330 ( 67) CCATCTCT 1 chr1:212605085-212605165 ( 73) TCTTCCCT 1 chr12:122927865-12292794 ( 71) TCTTCCCT 1 chr4:145059336-145059416 ( 5) TCTTCCCT 1 chr1:32937425-32937505 ( 70) TCATCACT 1 chr19:30559653-30559733 ( 13) CCATCCAC 1 chr11:3152645-3152725 ( 45) CCATCCAC 1 chr1:240348297-240348377 ( 61) CCTTCCCC 1 chr16:81611601-81611681 ( 24) TCATCCCC 1 chr17:35088825-35088905 ( 10) TCATCCCC 1 chr1:6997366-6997446 ( 18) CCATCACC 1 chr5:176807277-176807357 ( 65) CCTTCCTT 1 chr22:20239596-20239676 ( 28) CCATCACC 1 chr1:229714056-229714136 ( 61) CCTTCCTT 1 chr21:46576099-46576179 ( 53) CCATCACC 1 chr17:56553493-56553573 ( 12) TCATCCTT 1 chr6:29592005-29592085 ( 16) CCATCACC 1 chr11:69059047-69059127 ( 61) CCATCATT 1 chr4:80979451-80979531 ( 61) CCATCATT 1 chr6:168520329-168520409 ( 50) CCATCATT 1 chr13:114919111-11491919 ( 27) CCATCATT 1 chr3:46565239-46565319 ( 2) CCATCTAT 1 chr2:10447727-10447807 ( 63) TCTTCACT 1 chr22:22851769-22851849 ( 67) TCTTCACT 1 chr11:44564068-44564148 ( 31) CCATCTCC 1 chr22:23328369-23328449 ( 20) CCATCTCC 1 chr7:143040831-143040911 ( 24) CCCTCCCT 1 chr7:108281631-108281711 ( 33) CCCTCCCT 1 chr12:53038916-53038996 ( 61) CCCTCCCT 1 chr7:150777081-150777161 ( 58) TCTTCCCC 1 chr7:128373390-128373470 ( 70) TCTTCCCC 1 chr12:49246698-49246778 ( 10) TCTTCCCC 1 chr10:121186905-12118698 ( 8) CCATCAAC 1 chr22:22813335-22813415 ( 49) TCTTCCTT 1 chr2:91737778-91737858 ( 18) TCATCATT 1 chr2:91738344-91738424 ( 60) TCATCATT 1 chr22:22639613-22639693 ( 12) TCATCATT 1 chr11:5181210-5181290 ( 71) CCTTCTAT 1 chr7:1619565-1619645 ( 26) TCTTCTCT 1 chr1:208095035-208095115 ( 35) TCTTCTCT 1 chr1:244598892-244598972 ( 28) TCATCCTC 1 chr22:22714553-22714633 ( 50) TCTTCCAC 1 chr5:96520288-96520368 ( 57) TCATCTTT 1 chr22:22768618-22768698 ( 58) TCTTCATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCCMT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.30533 E= 1.0e-013 -1297 153 -1297 26 -1297 210 -1297 -1297 130 -264 -1297 14 -1297 -1297 -1297 188 -1297 210 -1297 -1297 -4 136 -1297 -98 21 113 -1297 -64 -1297 -14 -1297 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCCMT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 1.0e-013 0.000000 0.675000 0.000000 0.325000 0.000000 1.000000 0.000000 0.000000 0.662500 0.037500 0.000000 0.300000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.262500 0.600000 0.000000 0.137500 0.312500 0.512500 0.000000 0.175000 0.000000 0.212500 0.000000 0.787500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCCMT MEME-5 regular expression -------------------------------------------------------------------------------- [CT]C[AT]TC[CA][CA][TC] -------------------------------------------------------------------------------- Time 19.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:23084574-23084654 4.08e-01 80 chr8:21921569-21921649 1.81e-03 7_[+4(1.38e-05)]_18_[+1(2.53e-05)]_\ [+1(1.14e-05)]_2_[+4(1.38e-05)]_21 chr22:17034178-17034258 2.79e-02 80 chr19:3322960-3323040 3.25e-03 4_[+4(2.75e-05)]_4_[+4(1.38e-05)]_6_\ [+1(2.53e-05)]_34_[+4(1.38e-05)] chr9:44993180-44993260 1.50e-01 80 chr9:132599853-132599933 9.92e-01 80 chr22:22639613-22639693 5.64e-02 80 chr20:45820157-45820237 3.25e-03 3_[+4(3.90e-05)]_16_[+4(1.38e-05)]_\ 6_[+4(1.38e-05)]_31 chr4:40297250-40297330 3.00e-03 9_[+2(1.40e-05)]_16_[+2(1.40e-05)]_\ 16_[+2(1.40e-05)]_15 chr22:21169980-21170060 9.74e-02 80 chr1:50937541-50937621 4.18e-02 45_[+1(6.40e-05)]_27 chr6:147836571-147836651 8.78e-05 [+5(3.02e-05)]_[+5(3.02e-05)]_\ [+5(3.02e-05)]_[+5(3.02e-05)]_[+5(3.02e-05)]_23_[+3(6.52e-05)]_9 chr9:130983435-130983515 7.36e-02 80 chr1:28143494-28143574 4.15e-02 [+4(8.30e-05)]_39_[+4(8.30e-05)]_17_\ [+4(8.30e-05)] chr2:171879965-171880045 3.52e-01 80 chr10:45912215-45912295 2.94e-03 28_[+4(1.38e-05)]_4_[+4(1.38e-05)]_\ 1_[+1(2.53e-05)]_[+1(2.53e-05)]_15 chr12:125575048-12557512 8.78e-05 12_[+3(3.25e-05)]_31_[+5(3.02e-05)]_\ 10_[+5(6.06e-05)]_3 chr1:201227535-201227615 3.12e-02 14_[+1(6.40e-05)]_10_[+1(6.40e-05)]_\ 10_[+1(6.40e-05)]_22 chr9:101339300-101339380 3.25e-03 13_[+4(1.38e-05)]_8_[+4(1.38e-05)]_\ 8_[+4(1.38e-05)]_18_[+1(2.53e-05)]_1 chr7:73049868-73049948 8.78e-05 [+5(3.02e-05)]_[+5(3.02e-05)]_\ [+5(3.02e-05)]_41_[+5(3.02e-05)]_7 chr1:244598892-244598972 5.69e-05 24_[+2(5.86e-05)]_11_[+2(1.40e-05)]_\ 11_[+2(1.40e-05)]_10 chr15:22501677-22501757 4.51e-03 7_[+4(2.75e-05)]_12_[+4(2.75e-05)]_\ 30_[+1(2.53e-05)]_7 chr6:29592005-29592085 9.93e-03 80 chr4:129210179-129210259 4.34e-01 80 chr6:105848277-105848357 5.38e-03 80 chr11:75979657-75979737 2.09e-05 12_[+3(1.63e-05)]_15_[+5(3.02e-05)]_\ 4_[+2(1.40e-05)]_[+2(4.23e-05)]_2_[+3(1.63e-05)]_7 chr3:50687598-50687678 2.29e-02 59_[+1(3.66e-05)]_13 chr1:201639867-201639947 3.29e-01 80 chr22:21297544-21297624 8.65e-03 80 chr12:53038916-53038996 2.52e-03 80 chr21:39619355-39619435 3.25e-03 10_[+1(2.53e-05)]_28_[+1(2.53e-05)]_\ 10_[+4(1.38e-05)]_8 chr13:91772368-91772448 3.01e-03 12_[+1(1.14e-05)]_2_[+4(8.30e-05)]_\ 2_[+1(3.66e-05)]_8_[+4(8.30e-05)]_[+4(8.30e-05)]_16 chr19:1768739-1768819 1.02e-01 80 chr22:22813335-22813415 1.00e-01 80 chr7:151539570-151539650 1.22e-01 10_[+4(3.90e-05)]_1_[+4(3.90e-05)]_\ 53 chr2:9792429-9792509 8.78e-05 1_[+3(3.25e-05)]_1_[+5(3.02e-05)]_5_\ [+2(4.23e-05)]_2_[+3(3.25e-05)]_16_[+3(3.25e-05)]_2_[+2(4.23e-05)]_5 chr6:11313660-11313740 3.25e-03 25_[+4(1.38e-05)]_24_[+4(1.38e-05)]_\ 15 chr6:17587105-17587185 9.56e-01 80 chr4:145059336-145059416 4.33e-02 80 chr10:121186905-12118698 5.86e-03 22_[+2(7.25e-05)]_50 chr20:50162176-50162256 3.25e-03 5_[+4(1.38e-05)]_19_[+4(1.38e-05)]_\ 9_[+1(2.53e-05)]_14_[+4(1.38e-05)]_1 chr7:116070370-116070450 7.39e-02 80 chr17:35088825-35088905 1.52e-04 17_[+5(3.02e-05)]_19_[+3(6.52e-05)]_\ 28 chr22:22851769-22851849 4.02e-01 80 chr10:134241052-13424113 2.20e-03 18_[+2(7.25e-05)]_34_[+5(7.68e-05)]_\ 12 chr22:21422580-21422660 7.33e-01 80 chr1:30811829-30811909 5.81e-01 80 chr1:31172805-31172885 4.78e-05 15_[+5(1.40e-05)]_1_[+2(4.23e-05)]_\ [+2(4.23e-05)]_[+2(4.23e-05)]_[+2(4.23e-05)]_3_[+5(3.02e-05)]_1_\ [+2(5.86e-05)]_4 chr1:21469759-21469839 9.19e-02 80 chr1:226299436-226299516 2.33e-01 80 chr1:144595671-144595751 4.64e-01 80 chr20:48939389-48939469 4.34e-04 23_[+2(4.23e-05)]_33_[+3(4.89e-05)]_\ 8 chr8:30024529-30024609 3.18e-02 35_[+4(8.30e-05)]_37 chr3:196249741-196249821 4.64e-01 80 chr6:138291178-138291258 3.25e-03 [+1(2.53e-05)]_21_[+4(8.30e-05)]_6_\ [+1(6.40e-05)]_6_[+4(1.38e-05)]_4_[+4(1.38e-05)]_3 chr22:20241282-20241362 8.39e-01 80 chr19:6209847-6209927 3.46e-05 9_[+3(1.63e-05)]_2_[+5(3.02e-05)]_\ 16_[+5(6.06e-05)]_13_[+2(2.62e-05)]_8 chr1:28470862-28470942 1.82e-03 7_[+1(1.14e-05)]_[+1(2.53e-05)]_\ [+1(2.53e-05)]_2_[+4(1.38e-05)]_28_[+4(3.90e-05)]_3 chr19:2440727-2440807 8.78e-05 2_[+5(3.02e-05)]_12_[+5(3.02e-05)]_\ 29_[+5(3.02e-05)]_5_[+2(4.23e-05)] chr1:21902589-21902669 2.78e-03 40_[+4(1.38e-05)]_32 chr2:176035866-176035946 4.23e-01 80 chr13:114919111-11491919 3.27e-03 80 chr11:95736081-95736161 8.53e-02 80 chr6:28086127-28086207 6.70e-03 20_[+4(2.75e-05)]_52 chr1:924386-924466 8.27e-01 80 chr12:76101532-76101612 7.26e-02 80 chr19:15291259-15291339 8.56e-03 33_[+5(1.40e-05)]_39 chr12:122927865-12292794 3.50e-04 37_[+2(2.62e-05)]_6_[+3(4.89e-05)]_\ 1_[+3(4.89e-05)]_12 chr22:22768618-22768698 2.86e-01 80 chr7:148028687-148028767 1.82e-03 2_[+4(1.38e-05)]_7_[+1(1.14e-05)]_5_\ [+1(1.14e-05)]_3_[+4(1.38e-05)]_7_[+1(1.14e-05)]_5_[+1(1.14e-05)]_3 chr12:132649180-13264926 2.44e-05 2_[+5(3.02e-05)]_34_[+5(3.02e-05)]_\ 4_[+5(3.02e-05)]_16 chr2:131482136-131482216 1.50e-01 80 chr11:69965761-69965841 5.32e-03 1_[+1(5.03e-05)]_12_[+4(1.38e-05)]_\ 51 chr16:85381833-85381913 3.64e-05 11_[+2(4.23e-05)]_[+2(4.23e-05)]_15_\ [+2(1.40e-05)]_3_[+5(3.02e-05)]_11_[+5(3.02e-05)] chr12:92075856-92075936 6.95e-01 80 chr1:22031400-22031480 1.42e-01 80 chr18:667098-667178 5.39e-02 2_[+1(6.40e-05)]_70 chr13:45639592-45639672 1.57e-03 53_[+3(4.89e-05)]_6_[+3(4.89e-05)]_\ 5 chr8:42529788-42529868 8.38e-03 1_[+1(2.53e-05)]_21_[+1(5.03e-05)]_\ 12_[+1(5.03e-05)]_12_[+1(5.03e-05)]_2 chr12:49246698-49246778 2.95e-01 80 chr16:85467228-85467308 1.43e-03 3_[+1(1.14e-05)]_69 chr7:128114277-128114357 2.56e-01 16_[+3(7.86e-05)]_56 chr3:13620767-13620847 2.96e-01 80 chr7:101690592-101690672 3.25e-03 52_[+4(1.38e-05)]_12_[+4(2.75e-05)] chr1:21543202-21543282 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3.99e-01 80 chr1:166270010-166270090 7.85e-01 80 chr15:83780107-83780187 8.78e-05 9_[+5(3.02e-05)]_34_[+5(3.02e-05)]_\ 5_[+2(4.23e-05)]_8 chr22:23399881-23399961 1.43e-02 80 chr7:91699676-91699756 5.62e-01 80 chr1:109275328-109275408 1.10e-02 8_[+2(2.62e-05)]_64 chr22:20239596-20239676 1.67e-03 72_[+5(6.06e-05)] chr17:36362779-36362859 1.29e-01 23_[+3(7.86e-05)]_49 chr6:28914131-28914211 1.89e-02 80 chr19:14706477-14706557 2.47e-01 80 chr22:22054967-22055047 1.13e-02 80 chr22:50179851-50179931 9.15e-01 80 chr7:128373390-128373470 3.16e-01 80 chr19:6556369-6556449 3.93e-02 80 chr1:78227883-78227963 8.84e-01 80 chr2:10452665-10452745 4.95e-03 43_[+5(7.68e-05)]_29 chr19:3154607-3154687 3.25e-03 [+1(2.53e-05)]_22_[+4(1.38e-05)]_6_\ [+1(2.53e-05)]_1_[+4(1.38e-05)]_19 chr1:33536438-33536518 7.78e-02 80 chr12:57478891-57478971 1.79e-02 80 chr1:228400917-228400997 2.60e-02 55_[+3(7.86e-05)]_17 chr2:91779996-91780076 8.65e-04 18_[+2(2.62e-05)]_12_[+5(6.06e-05)]_\ 34 chr10:52157129-52157209 3.39e-01 80 chr5:176807277-176807357 1.90e-02 47_[+3(4.89e-05)]_4_[+3(4.89e-05)]_\ 13 chr6:168520329-168520409 6.29e-03 2_[+2(7.25e-05)]_21_[+2(7.25e-05)]_\ 41 chr6:16070678-16070758 9.16e-01 80 chr6:24695473-24695553 1.67e-01 30_[+3(7.86e-05)]_42 chr1:23952637-23952717 4.24e-01 80 chr3:33936612-33936692 7.72e-01 80 chr1:1384675-1384755 6.26e-01 80 chr10:49430054-49430134 3.25e-03 2_[+4(1.38e-05)]_4_[+4(1.38e-05)]_\ 22_[+1(2.53e-05)]_2_[+4(1.38e-05)]_18 chr8:37642682-37642762 9.43e-01 80 chr1:208095035-208095115 1.98e-01 80 chr3:186742749-186742829 9.98e-01 80 chr2:91738344-91738424 4.76e-01 80 chr16:29751384-29751464 8.78e-05 [+3(3.25e-05)]_1_[+5(3.02e-05)]_8_\ [+5(3.02e-05)]_20_[+5(3.02e-05)]_11_[+3(3.25e-05)] chr21:36112655-36112735 8.78e-05 8_[+5(3.02e-05)]_8_[+5(3.02e-05)]_\ 31_[+3(3.25e-05)]_9 chr19:14473486-14473566 1.48e-02 6_[+1(3.66e-05)]_40_[+1(3.66e-05)]_\ 18 chr16:86835694-86835774 1.70e-01 32_[+4(8.30e-05)]_40 chr3:46565239-46565319 8.78e-05 37_[+5(3.02e-05)]_35 chr22:19897046-19897126 8.44e-01 80 chr1:22610895-22610975 4.76e-05 [+5(3.02e-05)]_[+5(3.02e-05)]_\ [+5(3.02e-05)]_[+5(3.02e-05)]_16_[+5(3.02e-05)]_24 chr7:127270329-127270409 8.68e-01 80 chr22:20817182-20817262 8.04e-01 80 chr7:134993918-134993998 6.91e-03 4_[+1(3.66e-05)]_[+4(5.27e-05)]_16_\ [+4(8.30e-05)]_4_[+4(8.30e-05)]_2_[+1(3.66e-05)]_4_[+4(2.75e-05)]_2 chr22:23282946-23283026 7.78e-02 80 chr16:4997063-4997143 3.64e-05 2_[+2(2.62e-05)]_8_[+2(1.40e-05)]_8_\ [+2(4.23e-05)]_8_[+2(5.86e-05)]_8_[+2(1.40e-05)]_6 chr2:91737778-91737858 5.64e-02 80 chr16:85380303-85380383 8.85e-03 9_[+4(1.38e-05)]_63 chr6:32147026-32147106 7.67e-01 80 chr8:77912218-77912298 6.63e-01 80 chr22:22244930-22245010 8.19e-01 80 chr22:16950544-16950624 9.35e-01 80 chr22:20717424-20717504 8.89e-02 80 chr4:80979451-80979531 1.56e-01 80 chr6:2902771-2902851 1.07e-01 80 chr8:125966639-125966719 8.86e-01 80 chr16:66695754-66695834 1.33e-01 48_[+3(7.86e-05)]_24 chr22:22714553-22714633 4.15e-02 80 chr11:88057025-88057105 3.67e-01 80 chr16:86885779-86885859 2.18e-03 2_[+5(7.68e-05)]_19_[+2(7.25e-05)]_\ 22_[+2(7.25e-05)]_13 chr22:21970010-21970090 7.25e-01 80 chr7:134043544-134043624 9.07e-03 80 chr16:46707234-46707314 3.24e-01 80 chr6:31724031-31724111 2.72e-02 80 chr16:70899161-70899241 8.69e-03 80 chr3:195475270-195475350 1.80e-01 80 chr1:212605085-212605165 7.86e-03 80 chr15:20864900-20864980 8.70e-02 17_[+3(7.86e-05)]_55 chrX:154563929-154564009 6.14e-03 80 chr7:157180512-157180592 4.86e-02 80 chr19:50947435-50947515 8.76e-05 11_[+5(3.02e-05)]_12_[+5(3.02e-05)]_\ 5_[+2(4.23e-05)]_[+2(4.23e-05)]_2_[+3(3.25e-05)]_10 chr1:6997366-6997446 1.32e-02 80 chr19:55540304-55540384 6.57e-01 80 chr2:177680186-177680266 1.48e-02 15_[+4(8.30e-05)]_34_[+1(3.66e-05)]_\ 15 chr16:81611601-81611681 4.61e-03 8_[+2(5.86e-05)]_1_[+2(7.25e-05)]_\ 55 chr6:33396711-33396791 4.06e-01 80 chr7:108281631-108281711 1.44e-04 8_[+3(4.89e-05)]_5_[+2(2.62e-05)]_4_\ [+2(2.62e-05)]_39 chr6:15666355-15666435 9.50e-01 80 chr7:150777081-150777161 1.69e-01 80 chr10:72300101-72300181 6.23e-03 80 chr11:5181210-5181290 3.37e-01 80 chr11:69059047-69059127 6.29e-03 10_[+2(7.25e-05)]_30_[+2(7.25e-05)]_\ 16_[+2(7.25e-05)] chr12:76175480-76175560 9.01e-01 80 chr10:135063875-13506395 8.39e-01 80 chr10:47023333-47023413 5.01e-01 80 chr5:64989064-64989144 4.10e-02 12_[+4(8.30e-05)]_[+4(8.30e-05)]_21_\ [+4(8.30e-05)]_23 chr12:113876940-11387702 7.76e-05 4_[+5(3.02e-05)]_10_[+3(3.25e-05)]_\ 1_[+5(3.02e-05)]_8_[+5(3.02e-05)]_25 chr10:105461037-10546111 8.78e-05 8_[+5(3.02e-05)]_3_[+5(3.02e-05)]_4_\ [+5(3.02e-05)]_3_[+5(3.02e-05)]_1_[+2(4.23e-05)]_2_[+3(3.25e-05)]_11 chr1:142832076-142832156 5.12e-03 9_[+3(7.86e-05)]_63 chr1:167026225-167026305 7.88e-01 80 chr7:143040831-143040911 1.10e-02 24_[+2(2.62e-05)]_26_[+2(2.62e-05)]_\ 14 chr22:21185051-21185131 2.27e-02 80 chr6:170708006-170708086 6.07e-01 80 chr1:50834691-50834771 7.03e-01 80 chr6:36953156-36953236 3.03e-03 80 chr22:21240611-21240691 7.53e-01 80 chr19:56031146-56031226 3.50e-01 26_[+4(8.30e-05)]_46 chr1:31312967-31313047 3.22e-03 5_[+1(2.53e-05)]_1_[+4(1.38e-05)]_\ 58 chr19:3310428-3310508 1.58e-02 80 chr7:100812688-100812768 7.54e-01 80 chr1:228698795-228698875 7.87e-02 80 chr3:36954931-36955011 1.94e-01 80 chr7:131412403-131412483 4.05e-02 80 chr22:20239126-20239206 6.96e-04 8_[+5(7.68e-05)]_4_[+2(7.25e-05)]_\ 52 chr22:23363902-23363982 5.64e-01 80 chr7:1619565-1619645 9.19e-02 80 chr21:40285690-40285770 1.00e+00 80 chr7:105924215-105924295 2.34e-01 80 chr11:3152645-3152725 8.78e-05 15_[+3(3.25e-05)]_1_[+5(3.02e-05)]_\ 11_[+3(3.25e-05)]_8_[+3(3.25e-05)]_1_[+5(3.02e-05)]_4 chr1:231182991-231183071 4.57e-04 8_[+3(4.89e-05)]_29_[+3(4.89e-05)]_\ 27 chr5:96211182-96211262 5.34e-02 80 chr22:23328369-23328449 1.84e-01 80 chr7:66359531-66359611 1.48e-02 22_[+1(3.66e-05)]_22_[+4(8.30e-05)]_\ 8_[+4(8.30e-05)]_4 chr11:65319269-65319349 6.18e-02 80 chr1:109872821-109872901 4.42e-02 80 chr11:85699609-85699689 9.43e-02 80 chr17:17640073-17640153 6.22e-02 80 chr17:79499254-79499334 4.66e-01 80 chr15:41477559-41477639 1.42e-01 80 chr4:87976072-87976152 8.44e-01 80 chr1:208388920-208389000 3.25e-03 44_[+4(1.38e-05)]_7_[+4(1.38e-05)]_\ [+4(1.38e-05)]_5 chr7:73299322-73299402 1.57e-03 48_[+3(4.89e-05)]_[+3(4.89e-05)]_\ [+3(4.89e-05)]_8 chr1:224545553-224545633 1.69e-02 80 chr11:76518023-76518103 1.48e-02 6_[+4(8.30e-05)]_3_[+1(3.66e-05)]_\ 10_[+4(8.30e-05)]_[+4(8.30e-05)]_[+4(8.30e-05)]_[+4(8.30e-05)]_13 chr5:96520288-96520368 7.29e-02 80 chr7:100129885-100129965 1.44e-02 25_[+3(7.86e-05)]_47 chr6:30465243-30465323 1.43e-01 80 chr9:98186576-98186656 8.37e-01 80 chr7:155110141-155110221 4.32e-03 [+5(7.68e-05)]_72 chr1:15199539-15199619 3.25e-03 12_[+4(1.38e-05)]_6_[+1(2.53e-05)]_\ 2_[+4(1.38e-05)]_4_[+4(1.38e-05)]_16_[+4(1.38e-05)] chr7:127835186-127835266 7.19e-01 80 chr1:28103756-28103836 6.30e-01 80 chr1:47646528-47646608 4.24e-01 80 chr4:15164219-15164299 1.48e-02 2_[+1(3.66e-05)]_[+4(8.30e-05)]_6_\ [+1(3.66e-05)]_48 chr18:9104554-9104634 8.05e-01 80 chr11:44564068-44564148 7.22e-04 6_[+2(1.40e-05)]_66 chr6:24597156-24597236 8.78e-05 17_[+3(3.25e-05)]_[+3(3.25e-05)]_1_\ [+5(3.02e-05)]_8_[+5(3.02e-05)]_[+5(3.02e-05)]_14 chr2:91780370-91780450 2.69e-04 36_[+3(4.89e-05)]_8_[+3(4.89e-05)]_\ 4_[+5(6.06e-05)]_8 chr1:797345-797425 3.25e-03 36_[+4(1.38e-05)]_36 chr2:152640350-152640430 1.49e-02 80 chr7:151727841-151727921 1.08e-01 80 chr19:480504-480584 3.94e-02 11_[+1(5.03e-05)]_5_[+1(5.03e-05)]_\ 5_[+1(5.03e-05)]_35 chr3:130569313-130569393 6.10e-01 80 chr6:32153756-32153836 2.03e-01 80 chr11:85946070-85946150 1.48e-02 28_[+1(3.66e-05)]_25_[+1(3.66e-05)]_\ 11 chr17:27230670-27230750 4.57e-04 6_[+3(4.89e-05)]_6_[+3(4.89e-05)]_\ [+3(4.89e-05)]_[+3(4.89e-05)]_1_[+5(6.06e-05)]_[+3(4.89e-05)]_8_\ [+3(4.89e-05)]_3 chr19:30559653-30559733 3.17e-04 27_[+3(3.25e-05)]_14_[+2(4.23e-05)]_\ 23 chr21:11116078-11116158 8.32e-01 80 chr1:240348297-240348377 3.13e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************