******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/VEZF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:2136274-2136354 1.0000 80 chr7:44787926-44788006 1.0000 80 chr14:45366447-45366527 1.0000 80 chr8:141645842-141645922 1.0000 80 chr17:27916743-27916823 1.0000 80 chr1:182931791-182931871 1.0000 80 chr4:39979227-39979307 1.0000 80 chr16:89066260-89066340 1.0000 80 chr19:41107153-41107233 1.0000 80 chr19:47249729-47249809 1.0000 80 chr16:54964528-54964608 1.0000 80 chr19:4910287-4910367 1.0000 80 chr19:45251733-45251813 1.0000 80 chr11:126225431-12622551 1.0000 80 chr1:28995460-28995540 1.0000 80 chr10:30638265-30638345 1.0000 80 chr19:45578722-45578802 1.0000 80 chr6:35457958-35458038 1.0000 80 chr19:46012597-46012677 1.0000 80 chr16:432018-432098 1.0000 80 chr4:41216655-41216735 1.0000 80 chr16:75032824-75032904 1.0000 80 chr9:115249315-115249395 1.0000 80 chr20:57466352-57466432 1.0000 80 chr20:60718719-60718799 1.0000 80 chr11:96074984-96075064 1.0000 80 chr19:344583-344663 1.0000 80 chr2:139259377-139259457 1.0000 80 chr5:102898507-102898587 1.0000 80 chr11:6495288-6495368 1.0000 80 chr2:225450182-225450262 1.0000 80 chr20:57227386-57227466 1.0000 80 chr10:94350629-94350709 1.0000 80 chr15:44829067-44829147 1.0000 80 chr1:875639-875719 1.0000 80 chrX:154299596-154299676 1.0000 80 chr3:50654535-50654615 1.0000 80 chr21:40759551-40759631 1.0000 80 chr10:22609941-22610021 1.0000 80 chr20:49498709-49498789 1.0000 80 chr16:617170-617250 1.0000 80 chr9:19230410-19230490 1.0000 80 chr14:105266703-10526678 1.0000 80 chr1:19811992-19812072 1.0000 80 chr14:50809644-50809724 1.0000 80 chr15:66993430-66993510 1.0000 80 chr3:193857448-193857528 1.0000 80 chr6:45389687-45389767 1.0000 80 chr3:193859269-193859349 1.0000 80 chr14:23356151-23356231 1.0000 80 chr9:110252167-110252247 1.0000 80 chr3:42055004-42055084 1.0000 80 chr12:118558797-11855887 1.0000 80 chr12:54813089-54813169 1.0000 80 chr22:50624145-50624225 1.0000 80 chr16:88767471-88767551 1.0000 80 chr16:68119067-68119147 1.0000 80 chr17:78962877-78962957 1.0000 80 chr19:1315776-1315856 1.0000 80 chr21:38338990-38339070 1.0000 80 chr14:55032670-55032750 1.0000 80 chr13:22033492-22033572 1.0000 80 chr5:154237727-154237807 1.0000 80 chr19:5128793-5128873 1.0000 80 chr19:42788461-42788541 1.0000 80 chr4:38665505-38665585 1.0000 80 chr22:41215378-41215458 1.0000 80 chr19:50094542-50094622 1.0000 80 chr17:55333879-55333959 1.0000 80 chr11:110167342-11016742 1.0000 80 chr19:30335726-30335806 1.0000 80 chr19:38146397-38146477 1.0000 80 chr9:134269304-134269384 1.0000 80 chr20:25176287-25176367 1.0000 80 chr6:33378615-33378695 1.0000 80 chr5:139167686-139167766 1.0000 80 chr19:4067196-4067276 1.0000 80 chr20:62284957-62285037 1.0000 80 chr6:3457387-3457467 1.0000 80 chr2:109150833-109150913 1.0000 80 chr6:32143843-32143923 1.0000 80 chr7:6676878-6676958 1.0000 80 chr19:17356878-17356958 1.0000 80 chr19:15560762-15560842 1.0000 80 chr18:42259023-42259103 1.0000 80 chr8:145691249-145691329 1.0000 80 chr9:130547769-130547849 1.0000 80 chr1:31558038-31558118 1.0000 80 chrX:73513400-73513480 1.0000 80 chr15:86338237-86338317 1.0000 80 chr16:1821734-1821814 1.0000 80 chr19:39695594-39695674 1.0000 80 chr17:47439631-47439711 1.0000 80 chr4:160025118-160025198 1.0000 80 chr2:26256631-26256711 1.0000 80 chr6:143999006-143999086 1.0000 80 chr19:3359564-3359644 1.0000 80 chr21:40721045-40721125 1.0000 80 chr9:130324276-130324356 1.0000 80 chr6:37673376-37673456 1.0000 80 chr20:62258227-62258307 1.0000 80 chr17:2497179-2497259 1.0000 80 chr6:4136112-4136192 1.0000 80 chr16:710912-710992 1.0000 80 chr19:49149684-49149764 1.0000 80 chr3:13035633-13035713 1.0000 80 chr19:55795315-55795395 1.0000 80 chr3:52489515-52489595 1.0000 80 chr19:46919809-46919889 1.0000 80 chr1:202936441-202936521 1.0000 80 chr19:38806640-38806720 1.0000 80 chr17:42385893-42385973 1.0000 80 chr17:41177136-41177216 1.0000 80 chr2:171627425-171627505 1.0000 80 chr11:68079922-68080002 1.0000 80 chr4:88157032-88157112 1.0000 80 chr2:61922155-61922235 1.0000 80 chr8:125384913-125384993 1.0000 80 chrX:54556547-54556627 1.0000 80 chr8:94928938-94929018 1.0000 80 chr19:46367465-46367545 1.0000 80 chr22:35874017-35874097 1.0000 80 chr21:27107914-27107994 1.0000 80 chr3:195636614-195636694 1.0000 80 chr10:51572197-51572277 1.0000 80 chr11:71751944-71752024 1.0000 80 chr3:15901374-15901454 1.0000 80 chr9:6008374-6008454 1.0000 80 chr12:7126128-7126208 1.0000 80 chr3:171758201-171758281 1.0000 80 chr17:71307259-71307339 1.0000 80 chr7:5463479-5463559 1.0000 80 chr22:42840770-42840850 1.0000 80 chr11:8932627-8932707 1.0000 80 chr5:10701713-10701793 1.0000 80 chr12:116715542-11671562 1.0000 80 chr6:15248964-15249044 1.0000 80 chr18:72921169-72921249 1.0000 80 chr12:53441094-53441174 1.0000 80 chr17:20946525-20946605 1.0000 80 chr17:36861539-36861619 1.0000 80 chr1:41826855-41826935 1.0000 80 chrX:139015281-139015361 1.0000 80 chr10:134368896-13436897 1.0000 80 chrX:70586001-70586081 1.0000 80 chr15:85291721-85291801 1.0000 80 chr3:49591815-49591895 1.0000 80 chr17:1953321-1953401 1.0000 80 chr7:77166488-77166568 1.0000 80 chr17:46662769-46662849 1.0000 80 chr11:66139370-66139450 1.0000 80 chr11:119455072-11945515 1.0000 80 chr11:86747234-86747314 1.0000 80 chr7:150573981-150574061 1.0000 80 chr12:53774053-53774133 1.0000 80 chr1:230202664-230202744 1.0000 80 chr2:10588495-10588575 1.0000 80 chr19:14201706-14201786 1.0000 80 chrX:39874281-39874361 1.0000 80 chr5:150036292-150036372 1.0000 80 chr5:85866267-85866347 1.0000 80 chr7:18217992-18218072 1.0000 80 chr12:57916357-57916437 1.0000 80 chr19:13962119-13962199 1.0000 80 chr20:48925322-48925402 1.0000 80 chr1:23881393-23881473 1.0000 80 chr2:48133777-48133857 1.0000 80 chr16:1458236-1458316 1.0000 80 chr11:65292270-65292350 1.0000 80 chr9:114246177-114246257 1.0000 80 chr13:30424751-30424831 1.0000 80 chr7:73703622-73703702 1.0000 80 chr20:48729656-48729736 1.0000 80 chr6:28186716-28186796 1.0000 80 chr19:10341998-10342078 1.0000 80 chr11:1715392-1715472 1.0000 80 chr16:672310-672390 1.0000 80 chr8:144649485-144649565 1.0000 80 chr12:123849513-12384959 1.0000 80 chr17:40829013-40829093 1.0000 80 chr16:81478396-81478476 1.0000 80 chrX:48900945-48901025 1.0000 80 chr1:46219355-46219435 1.0000 80 chr1:166136242-166136322 1.0000 80 chr11:61659075-61659155 1.0000 80 chr11:34937885-34937965 1.0000 80 chr16:67840886-67840966 1.0000 80 chr10:75634408-75634488 1.0000 80 chr6:33480124-33480204 1.0000 80 chr6:33395832-33395912 1.0000 80 chr15:101142600-10114268 1.0000 80 chr1:179198812-179198892 1.0000 80 chr15:74340886-74340966 1.0000 80 chr19:40791166-40791246 1.0000 80 chr10:32667771-32667851 1.0000 80 chr22:36424969-36425049 1.0000 80 chr5:178054178-178054258 1.0000 80 chrX:122993644-122993724 1.0000 80 chr19:36208831-36208911 1.0000 80 chr20:31350029-31350109 1.0000 80 chr2:46926252-46926332 1.0000 80 chr2:63277800-63277880 1.0000 80 chr1:38471180-38471260 1.0000 80 chr1:27320036-27320116 1.0000 80 chr12:48206932-48207012 1.0000 80 chr1:25943140-25943220 1.0000 80 chr17:42201076-42201156 1.0000 80 chr3:182511142-182511222 1.0000 80 chr5:10761535-10761615 1.0000 80 chr7:105517123-105517203 1.0000 80 chr2:145089898-145089978 1.0000 80 chr1:205198696-205198776 1.0000 80 chr7:73256935-73257015 1.0000 80 chr4:1723039-1723119 1.0000 80 chr22:32871180-32871260 1.0000 80 chr8:57124046-57124126 1.0000 80 chr3:178865962-178866042 1.0000 80 chr3:194207596-194207676 1.0000 80 chrX:44732339-44732419 1.0000 80 chr1:156052294-156052374 1.0000 80 chr1:244211798-244211878 1.0000 80 chr11:62380109-62380189 1.0000 80 chr18:29078047-29078127 1.0000 80 chr6:33266744-33266824 1.0000 80 chr22:37956354-37956434 1.0000 80 chr1:31501218-31501298 1.0000 80 chr11:33279737-33279817 1.0000 80 chr18:43678332-43678412 1.0000 80 chr17:75136885-75136965 1.0000 80 chr19:18058945-18059025 1.0000 80 chr5:43105623-43105703 1.0000 80 chr3:170076072-170076152 1.0000 80 chr1:205782202-205782282 1.0000 80 chr11:64949175-64949255 1.0000 80 chrX:24043655-24043735 1.0000 80 chrX:47003871-47003951 1.0000 80 chr11:57417402-57417482 1.0000 80 chr11:32914488-32914568 1.0000 80 chr1:61545641-61545721 1.0000 80 chr10:12084906-12084986 1.0000 80 chr13:42614584-42614664 1.0000 80 chr17:56160671-56160751 1.0000 80 chr14:91527099-91527179 1.0000 80 chr18:45534684-45534764 1.0000 80 chr16:11890890-11890970 1.0000 80 chr16:85496215-85496295 1.0000 80 chr11:62539067-62539147 1.0000 80 chr7:100292061-100292141 1.0000 80 chr14:71822775-71822855 1.0000 80 chr1:1532826-1532906 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_VEZF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/VEZF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.126 C 0.373 G 0.373 T 0.128 Background letter frequencies (from file dataset with add-one prior applied): A 0.126 C 0.373 G 0.373 T 0.128 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RAGRRRRA MEME-1 width = 8 sites = 51 llr = 419 E-value = 1.0e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRRRRA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4a35544a pos.-specific C 1::::::: probability G 5:65566: matrix T ::1::::: bits 3.0 * 2.7 * * 2.4 * * 2.1 * * Relative 1.8 * * Entropy 1.5 * * (11.8 bits) 1.2 * ** ** 0.9 * ***** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GAGAAGGA consensus A AGGAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRRRA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:49498709-49498789 14 6.35e-08 caatctctta aaaaaaaa aGGGGGGGTT chr1:46219355-46219435 33 4.40e-07 cacaatttgc aaaaagaa gaagaagggg chr10:32667771-32667851 24 1.99e-06 CTGCAGCTCG GAAAAAAA TGCAGTGTGT chr9:6008374-6008454 70 1.99e-06 GAGAGAAGCA AAGAAAGA GGC chr11:71751944-71752024 30 2.55e-06 AAGAGTGAGG GAGAAAAA GTCTCGGTGC chr9:19230410-19230490 46 2.74e-06 AGGGAGGGGG AAAAGAAA GTGCTGTTTT chr10:30638265-30638345 32 2.74e-06 GGGGGGGGGC AAAAGAAA TGGGAAGCCT chr6:28186716-28186796 59 6.99e-06 GGGGGAGCGG AAGAAGGA CCGGGCTGTG chr15:86338237-86338317 19 6.99e-06 TGCAGCCGCA GAAAAGAA GGGGGTGGGC chr14:45366447-45366527 57 6.99e-06 CTTCCTCCGT AATAAGAA GCGACGTGTC chr3:178865962-178866042 53 9.95e-06 GATGTGAGCG GAAAAAGA GACCAATAAA chr5:43105623-43105703 37 1.40e-05 GAAGAGTGGG GAGAAAGA CAGTTTGGCT chr22:36424969-36425049 26 1.40e-05 ggcggggaga gagaaaga gggagggagg chr19:39695594-39695674 21 1.62e-05 GACCTTGGGA AAGGAGAA GCTGGAGATA chr20:62284957-62285037 31 1.91e-05 gggagggagg aagagaga gaggaGCAAG chr12:123849513-12384959 27 2.32e-05 ctcctAGGTG AAGGAAGA TGATTTCCCC chr19:55795315-55795395 72 2.32e-05 CAGCGTGCCg gagagaaa g chr5:10761535-10761615 33 3.49e-05 AAGTGAGAGG GAGAAGGA AGGAGAGGGA chr15:101142600-10114268 62 3.49e-05 GTAAGGAGGA GAGAAGGA AGCAACCAAC chr13:30424751-30424831 4 3.49e-05 ACT AAGGGAAA CGGGGAGAGC chr22:42840770-42840850 55 3.49e-05 ccttgagctt gataagaa ccccgtggga chr16:54964528-54964608 12 4.64e-05 aaggggaggc aaagagga ggggtgagag chr17:27916743-27916823 6 4.64e-05 cTAGA GAAAGGAA GCCCGGGCGC chr9:130324276-130324356 52 5.84e-05 GCCCGCGGGG AAGGAGGA GGGGGGCGCA chr10:134368896-13436897 32 8.59e-05 GCCTGGCCGG AAGGGGAA GAAGGGGGGC chr8:125384913-125384993 48 8.59e-05 GGCGGGGCGA AAGGGGAA GGAGGTGCGG chr19:49149684-49149764 14 8.59e-05 CCTCCGCAGC AAGGGGAA GGGGGGGCGC chr10:12084906-12084986 51 1.05e-04 AAGGAGGCGA GAGGGAAA AGGCCATCCG chr7:5463479-5463559 57 1.35e-04 CCCTCTCCGG CAAAGAAA CACGCATTGT chr8:145691249-145691329 64 1.35e-04 gggcgagact gagaggga ccgagaggg chr19:42788461-42788541 70 1.35e-04 AGGGAGGAGG GAGAGGGA GGG chr7:77166488-77166568 73 1.54e-04 gTCTCCGACG GAGGAGGA chr9:130547769-130547849 13 1.54e-04 ggggcgggcg gaggagga ggggagggcg chr4:39979227-39979307 12 1.54e-04 TGGCGGTGCC GAGGAGGA GCAGCCGCCG chr4:88157032-88157112 36 1.87e-04 GGTGCGGGGG AAGGGGGA ATCGAAGGCG chr16:88767471-88767551 24 1.87e-04 GGAAGTGAGA GATGAAGA CGGGAGGGGA chr3:42055004-42055084 67 1.87e-04 cggggcTGGG AAGGGGGA GGGCTC chr11:66139370-66139450 73 2.08e-04 CCCTGCGGCG GAGGGGAA chr9:110252167-110252247 50 2.08e-04 Gggggcgggg gaggggaa ggaggggcgc chr10:94350629-94350709 7 2.08e-04 GACCAG CAGAAGGA GCTGTAGATG chr4:41216655-41216735 66 2.08e-04 GGGGGCCGGG CAGAAGGA GGCGGGC chr1:244211798-244211878 28 2.15e-04 GGAGGCAGGG GAAGGAGA GGGGCGGACT chr18:29078047-29078127 52 2.34e-04 TCggggcggg gagggaga gggtggccgg chr7:73256935-73257015 11 2.34e-04 AATAGCCAGT CAAAGGAA GGCGCTGGCA chr17:46662769-46662849 22 2.34e-04 CACAGGGCTA GAGGGAGA GTTCAGTGTC chr5:10701713-10701793 62 2.34e-04 CTGACCAGTA GAGGGAGA ATGAACTTCA chr4:38665505-38665585 50 2.70e-04 ggcTCCGGGG AATAATGA GTGTCTGTCA chr17:56160671-56160751 24 2.91e-04 gggctcagcc aatgggga gcgcggacgg chr16:75032824-75032904 54 3.43e-04 ccggcggggg gaggggga gggggcgcgg chr6:15248964-15249044 19 3.65e-04 TGTGACGTCA CAAAGGGA CGGGCTCGGG chr3:52489515-52489595 2 4.33e-04 c aggaagaa ggcggggcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRRRA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:49498709-49498789 6.4e-08 13_[+1]_59 chr1:46219355-46219435 4.4e-07 32_[+1]_40 chr10:32667771-32667851 2e-06 23_[+1]_49 chr9:6008374-6008454 2e-06 69_[+1]_3 chr11:71751944-71752024 2.6e-06 29_[+1]_43 chr9:19230410-19230490 2.7e-06 45_[+1]_27 chr10:30638265-30638345 2.7e-06 31_[+1]_41 chr6:28186716-28186796 7e-06 58_[+1]_14 chr15:86338237-86338317 7e-06 18_[+1]_54 chr14:45366447-45366527 7e-06 56_[+1]_16 chr3:178865962-178866042 9.9e-06 52_[+1]_20 chr5:43105623-43105703 1.4e-05 36_[+1]_36 chr22:36424969-36425049 1.4e-05 25_[+1]_47 chr19:39695594-39695674 1.6e-05 20_[+1]_52 chr20:62284957-62285037 1.9e-05 30_[+1]_42 chr12:123849513-12384959 2.3e-05 26_[+1]_46 chr19:55795315-55795395 2.3e-05 71_[+1]_1 chr5:10761535-10761615 3.5e-05 32_[+1]_40 chr15:101142600-10114268 3.5e-05 61_[+1]_11 chr13:30424751-30424831 3.5e-05 3_[+1]_69 chr22:42840770-42840850 3.5e-05 54_[+1]_18 chr16:54964528-54964608 4.6e-05 11_[+1]_61 chr17:27916743-27916823 4.6e-05 5_[+1]_67 chr9:130324276-130324356 5.8e-05 51_[+1]_21 chr10:134368896-13436897 8.6e-05 31_[+1]_41 chr8:125384913-125384993 8.6e-05 47_[+1]_25 chr19:49149684-49149764 8.6e-05 13_[+1]_59 chr10:12084906-12084986 0.00011 50_[+1]_22 chr7:5463479-5463559 0.00014 56_[+1]_16 chr8:145691249-145691329 0.00014 63_[+1]_9 chr19:42788461-42788541 0.00014 69_[+1]_3 chr7:77166488-77166568 0.00015 72_[+1] chr9:130547769-130547849 0.00015 12_[+1]_60 chr4:39979227-39979307 0.00015 11_[+1]_61 chr4:88157032-88157112 0.00019 35_[+1]_37 chr16:88767471-88767551 0.00019 23_[+1]_49 chr3:42055004-42055084 0.00019 66_[+1]_6 chr11:66139370-66139450 0.00021 72_[+1] chr9:110252167-110252247 0.00021 49_[+1]_23 chr10:94350629-94350709 0.00021 6_[+1]_66 chr4:41216655-41216735 0.00021 65_[+1]_7 chr1:244211798-244211878 0.00021 27_[+1]_45 chr18:29078047-29078127 0.00023 51_[+1]_21 chr7:73256935-73257015 0.00023 10_[+1]_62 chr17:46662769-46662849 0.00023 21_[+1]_51 chr5:10701713-10701793 0.00023 61_[+1]_11 chr4:38665505-38665585 0.00027 49_[+1]_23 chr17:56160671-56160751 0.00029 23_[+1]_49 chr16:75032824-75032904 0.00034 53_[+1]_19 chr6:15248964-15249044 0.00037 18_[+1]_54 chr3:52489515-52489595 0.00043 1_[+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRRRA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRRRRA width=8 seqs=51 chr20:49498709-49498789 ( 14) AAAAAAAA 1 chr1:46219355-46219435 ( 33) AAAAAGAA 1 chr10:32667771-32667851 ( 24) GAAAAAAA 1 chr9:6008374-6008454 ( 70) AAGAAAGA 1 chr11:71751944-71752024 ( 30) GAGAAAAA 1 chr9:19230410-19230490 ( 46) AAAAGAAA 1 chr10:30638265-30638345 ( 32) AAAAGAAA 1 chr6:28186716-28186796 ( 59) AAGAAGGA 1 chr15:86338237-86338317 ( 19) GAAAAGAA 1 chr14:45366447-45366527 ( 57) AATAAGAA 1 chr3:178865962-178866042 ( 53) GAAAAAGA 1 chr5:43105623-43105703 ( 37) GAGAAAGA 1 chr22:36424969-36425049 ( 26) GAGAAAGA 1 chr19:39695594-39695674 ( 21) AAGGAGAA 1 chr20:62284957-62285037 ( 31) AAGAGAGA 1 chr12:123849513-12384959 ( 27) AAGGAAGA 1 chr19:55795315-55795395 ( 72) GAGAGAAA 1 chr5:10761535-10761615 ( 33) GAGAAGGA 1 chr15:101142600-10114268 ( 62) GAGAAGGA 1 chr13:30424751-30424831 ( 4) AAGGGAAA 1 chr22:42840770-42840850 ( 55) GATAAGAA 1 chr16:54964528-54964608 ( 12) AAAGAGGA 1 chr17:27916743-27916823 ( 6) GAAAGGAA 1 chr9:130324276-130324356 ( 52) AAGGAGGA 1 chr10:134368896-13436897 ( 32) AAGGGGAA 1 chr8:125384913-125384993 ( 48) AAGGGGAA 1 chr19:49149684-49149764 ( 14) AAGGGGAA 1 chr10:12084906-12084986 ( 51) GAGGGAAA 1 chr7:5463479-5463559 ( 57) CAAAGAAA 1 chr8:145691249-145691329 ( 64) GAGAGGGA 1 chr19:42788461-42788541 ( 70) GAGAGGGA 1 chr7:77166488-77166568 ( 73) GAGGAGGA 1 chr9:130547769-130547849 ( 13) GAGGAGGA 1 chr4:39979227-39979307 ( 12) GAGGAGGA 1 chr4:88157032-88157112 ( 36) AAGGGGGA 1 chr16:88767471-88767551 ( 24) GATGAAGA 1 chr3:42055004-42055084 ( 67) AAGGGGGA 1 chr11:66139370-66139450 ( 73) GAGGGGAA 1 chr9:110252167-110252247 ( 50) GAGGGGAA 1 chr10:94350629-94350709 ( 7) CAGAAGGA 1 chr4:41216655-41216735 ( 66) CAGAAGGA 1 chr1:244211798-244211878 ( 28) GAAGGAGA 1 chr18:29078047-29078127 ( 52) GAGGGAGA 1 chr7:73256935-73257015 ( 11) CAAAGGAA 1 chr17:46662769-46662849 ( 22) GAGGGAGA 1 chr5:10701713-10701793 ( 62) GAGGGAGA 1 chr4:38665505-38665585 ( 50) AATAATGA 1 chr17:56160671-56160751 ( 24) AATGGGGA 1 chr16:75032824-75032904 ( 54) GAGGGGGA 1 chr6:15248964-15249044 ( 19) CAAAGGGA 1 chr3:52489515-52489595 ( 2) AGGAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRRRA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 1.0e-014 171 -193 39 -1232 296 -1232 -424 -1232 101 -1232 80 -38 212 -1232 27 -1232 201 -1232 39 -1232 164 -1232 66 -270 177 -1232 61 -1232 299 -1232 -1232 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRRRA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.0e-014 0.411765 0.098039 0.490196 0.000000 0.980392 0.000000 0.019608 0.000000 0.254902 0.000000 0.647059 0.098039 0.549020 0.000000 0.450980 0.000000 0.509804 0.000000 0.490196 0.000000 0.392157 0.000000 0.588235 0.019608 0.431373 0.000000 0.568627 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRRRA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[GA][AG][AG][GA][GA]A -------------------------------------------------------------------------------- Time 5.21 secs. ******************************************************************************** ******************************************************************************** MOTIF CCBCCYCC MEME-2 width = 8 sites = 139 llr = 850 E-value = 9.8e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCBCCYCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a93a9689 probability G ::3::::: matrix T :14:1421 bits 3.0 2.7 2.4 2.1 Relative 1.8 Entropy 1.5 * * (8.8 bits) 1.2 ** ** * 0.9 ** ***** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCTCCCCC consensus C T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBCCYCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:1532826-1532906 8 4.41e-05 CTGGGct cctcctcc ccctccccct chr11:62539067-62539147 28 4.41e-05 TGACCCCTGA CCTCCTCC CCCCGCGCAC chr19:40791166-40791246 53 4.41e-05 ggcggcgacg CCTCCTCC GAGGCAGGCC chrX:48900945-48901025 35 4.41e-05 GGACGACCGC cctcctcc ccctcgtctt chr20:48925322-48925402 39 4.41e-05 GCGCCTGCCC CCTCCTCC CCCCGCCACC chr11:119455072-11945515 58 4.41e-05 CCCCCAAGCC CCTCCTCC TGCCCATTGT chr6:15248964-15249044 48 4.41e-05 GGAACCTTCC CCTCCTCC TCCGTGACGT chr3:171758201-171758281 56 4.41e-05 CACGCCACGT CCTCCTCC CCGTCCTGCC chr19:3359564-3359644 31 4.41e-05 tccctcgccg cctcctcc cgccgcctgc chr6:143999006-143999086 12 4.41e-05 cccgcttccc cctcctcc cctccctatc chr3:193857448-193857528 11 4.41e-05 GCCGGCCAGT CCTCCTCC CCCCCGGCCC chr20:57466352-57466432 21 4.41e-05 gccgccgcct cctcctcc cccCGCCTCC chr11:126225431-12622551 30 4.41e-05 CGCCCTTCCC CCTCCTCC ACCCCGCCCT chr1:2136274-2136354 25 4.41e-05 TCTGCCGGAc cctcctcc cgggcacctc chr18:45534684-45534764 66 1.88e-04 ccccgggcca cctccccc gcccctc chr1:61545641-61545721 39 1.88e-04 TGTTCCCCCG CCTCCCCC CCTCCCTCCG chr17:75136885-75136965 15 1.88e-04 CCCCGGGTGT CCTCCCCC CTCCCCTTTC chr11:33279737-33279817 20 1.88e-04 ctcggccccc ccTCCCCC TGCCAAGGTT chr19:36208831-36208911 52 1.88e-04 acgggccgcc cctccccc cgcctccCCG chr15:74340886-74340966 39 1.88e-04 GCGCAccccc cctccccc cccccccccc chr6:33395832-33395912 29 1.88e-04 GGGCGGGGCC CCTCCCCC ACCGGGGACA chr2:48133777-48133857 70 1.88e-04 GGGTTTCCTC CCTCCCCC GCC chrX:139015281-139015361 4 1.88e-04 CCC CCTCCCCC TCCTTGCTCC chr11:8932627-8932707 5 1.88e-04 cccg cctccccc acttctcccg chr17:71307259-71307339 23 1.88e-04 GCTCGACTGC CCTCCCCC CGCACCCCGC chr22:35874017-35874097 40 1.88e-04 tccccacttc cctccttc tcctctcATA chr19:46919809-46919889 10 1.88e-04 cgccccTCG CCTCCCCC TTCGCACAGT chr19:55795315-55795395 2 1.88e-04 c cctccccc ctccGAAAGG chr17:2497179-2497259 54 1.88e-04 tctccctccc cctccccc GCCGGTGGAT chrX:73513400-73513480 55 1.88e-04 CCGCGCCCCG CCTCCCCC ACGCGCCGCT chr9:130547769-130547849 41 1.88e-04 aggccgggCA CCTCCCCC TTTATAACGC chr19:17356878-17356958 44 1.88e-04 ggggccTGAc cctccccc gcctccctct chr7:6676878-6676958 29 1.88e-04 ACCGGAAGTT CCTccccc cgcgggcgcg chr11:110167342-11016742 49 1.88e-04 cgcccccccg cctccccc tgccggccgg chr13:22033492-22033572 31 1.88e-04 ccgtcgcccc cctccccc cgcgtccgtc chr14:55032670-55032750 20 1.88e-04 GTCCGGGGTT CCTCCCCC CGGCTCCCCC chr12:54813089-54813169 3 1.88e-04 GC CCTCCCCC CGCCTGCCGA chr1:19811992-19812072 57 1.88e-04 TCAGCACCCC CCTccccc cgcgccgggc chr19:45578722-45578802 34 1.88e-04 TGTAGGCGGC CCTCCTTC CCTGCCCAGT chr19:45251733-45251813 5 1.88e-04 tctc cctccccc gccGAGGCCT chr19:47249729-47249809 30 1.88e-04 cacccccccc cctccccc gccgcaacca chr19:41107153-41107233 56 1.88e-04 gcgcgggcga cctccccc gcgggcgggc chr17:40829013-40829093 49 2.32e-04 cccccggccc cctccctc ccggggggcc chr12:123849513-12384959 12 2.32e-04 ctccgccccg cctccctc ctAGGTGAAG chr13:30424751-30424831 62 2.32e-04 CCGTCCTCGT CCTCCCTC CGCGGACACC chr17:47439631-47439711 61 2.32e-04 GATCCCGACA CCTCCCTC CGCCCGCCCC chr15:44829067-44829147 48 2.32e-04 CCCCTGTGcc cctccctc tgctctttcc chr19:10341998-10342078 57 2.62e-04 CTCGCCCCGC CCTCCTCT CCTCCCCTTT chr2:109150833-109150913 64 2.62e-04 ggccccTGGC CTTCCTCC CCTTCCTGC chr19:46012597-46012677 4 2.62e-04 CCT CTTCCTCC GGGACTCTTC chr14:45366447-45366527 47 2.62e-04 CGTGCCGAAT CTTCCTCC GTAATAAGAA chr7:100292061-100292141 41 5.19e-04 CGACAGCCCC CCCCCTCC CCGCCCCGAC chr3:194207596-194207676 53 5.19e-04 CGTAGAGAAC CCCCCTCC CCTCCGCGGC chr2:145089898-145089978 60 5.19e-04 gccgcgctcc ccgcctcc ccgctggccc chr10:32667771-32667851 7 5.19e-04 CTGCCC CCGCCTCC TGCAGCTCGG chr7:73703622-73703702 61 5.19e-04 TGAcccgccc ccccctcc cgcccgcccc chrX:70586001-70586081 42 5.19e-04 Tccccccctt ccccctcc cctctcccca chr1:41826855-41826935 16 5.19e-04 CCTAGCCCCC CCGCCTCC GCGCCGAGCA chr18:72921169-72921249 16 5.19e-04 cccgctcccc ccgcctcc ccggcgccgg chr2:171627425-171627505 18 5.19e-04 CGGCCTGGGC CCGCCTCC ACCCTGCCTC chr6:37673376-37673456 40 5.19e-04 ATGGCGCCCG CCCCCTCC GCCCCCCCAG chr21:40721045-40721125 24 5.19e-04 gccgcgggct ccccctcc ccgccggccg chr1:31558038-31558118 30 5.19e-04 caaactgacc ccccctcc ccaccccccg chr6:3457387-3457467 56 5.19e-04 CTCGCGAGCG CCCCCTCC AGCCCGGAcg chr19:50094542-50094622 24 5.19e-04 gcccgggacg ccccctcc cgagcgcgcg chr14:50809644-50809724 62 5.19e-04 AGATGCGGCC CCCCCTCC AGAATTTAGA chrX:154299596-154299676 14 5.19e-04 gcgcccgctg ccccctcc tcgcccccac chr20:60718719-60718799 62 5.19e-04 gcccccTTCC CCCCCTCC GCGACTGCGG chr17:42201076-42201156 42 6.33e-04 accaccaacc cctcccct gcctctcggc chr17:20946525-20946605 59 6.33e-04 AGGGCCCGCC CCTCCCCT TCCTTTATTG chr19:5128793-5128873 25 6.33e-04 CCAGTGTTTA CCTCCCCT GGCCAGATAA chr16:68119067-68119147 72 6.33e-04 ACGTGACTTC CTTCCTTC T chr14:71822775-71822855 49 1.47e-03 CAAGACTCAC CCCCCTTC TTCCACTTTC chrX:24043655-24043735 30 1.47e-03 GCCCGGGAGG CCCCCCCC TCGGCCCCTG chr18:43678332-43678412 9 1.47e-03 CTCTCCCC CCGCCCCC GCCGCCACTC chr7:73256935-73257015 42 1.47e-03 Tgcccgcccc cccccccc ccgccAGCCA chr1:25943140-25943220 10 1.47e-03 GCCTCTGCC CCGCCCCC GGACGCGCGG chr12:48206932-48207012 35 1.47e-03 CCTGGGGCTC CCCCCTTC ACCTCCCCAC chr1:38471180-38471260 66 1.47e-03 cgcccggacc ccgccccc ggccccc chr2:46926252-46926332 38 1.47e-03 Tgcccgcccc ccgccccc cgccccgggA chr20:31350029-31350109 38 1.47e-03 TCCCTCGTcc ccgccccc ccgttccccc chr5:178054178-178054258 43 1.47e-03 CATTTCCACC CCCCCCCC CCCGCCCACC chr1:179198812-179198892 36 1.47e-03 AGAGCGTCTc ccgccccc cgccccccgc chr10:75634408-75634488 4 1.47e-03 agt cccccccc ccgcccggcc chr16:67840886-67840966 58 1.47e-03 ATCCCTGACT ccgccccc gccgcggggg chr11:61659075-61659155 8 1.47e-03 tgccccc ccgccccc ggccaggccc chr20:48729656-48729736 48 1.47e-03 CCCTTCTTCA CCCCCCCC TTACCCGTCC chr16:1458236-1458316 28 1.47e-03 GGGAGCTGCC CCCCCCCC CAACGACCAG chr5:150036292-150036372 31 1.47e-03 gcccccgccc ccgccccc gcccccgcGC chr19:14201706-14201786 31 1.47e-03 ggccccccgc ccgccccc TTTACCCTGC chr11:86747234-86747314 62 1.47e-03 ctccccgccc ccgccccc ccgttttttt chr15:85291721-85291801 56 1.47e-03 cgcccccgct ccgccccc ggagccgcag chr17:41177136-41177216 9 1.47e-03 TCTGGGCC CCGCCCCC CGGCTGcggg chr19:38806640-38806720 55 1.47e-03 ACCCCTCCAG CCCCCCCC TTCACGGAGG chr16:710912-710992 52 1.47e-03 ggcccaggcc ccgccccc tgttcggccc chr4:160025118-160025198 37 1.47e-03 cccagccgag ccgccccc ccgcgggccc chr16:1821734-1821814 66 1.47e-03 ccgaaccccg cccccccc gcgcccc chr19:15560762-15560842 21 1.47e-03 ccccgccgcc ccgccccc ccggcgcgcc chr5:139167686-139167766 68 1.47e-03 GGAGAgcccg cccccccc gcgcc chr21:38338990-38339070 34 1.47e-03 aagggccgcg ccgccccc ccgggccAGG chr14:23356151-23356231 38 1.47e-03 tcgccccgcc ccgccccC GTCCGGCTTC chr9:19230410-19230490 12 1.47e-03 CCTTTTCCAC CCGCCCCC GCAGGAGGAA chr16:617170-617250 36 1.47e-03 GTGTGGGTGA CCGCCCCC CCGCCGTAGA chr21:40759551-40759631 69 1.47e-03 CCCACACTCC CCCCCCCC ACTT chr1:875639-875719 41 1.47e-03 gccgccgccc cccccccc cgccccgccg chr20:57227386-57227466 45 1.47e-03 CGCAGCACCC CCCCCCCC GCACCCCCCG chr6:35457958-35458038 10 1.47e-03 GCTGTGGCC CCCCCTTC TTAGGGTGAT chr16:89066260-89066340 44 1.47e-03 aaacaatgag ccgccccc accgctctga chr22:42840770-42840850 41 1.55e-03 tcaaccattt cctccctt gagcttgata chr11:57417402-57417482 38 1.81e-03 TCCCCCCCAC CCCCCCTC ACCTCCCACG chr3:182511142-182511222 12 1.81e-03 GCGCGCCAGG CCCCCCTC GGTCCGCGCA chr9:114246177-114246257 54 1.81e-03 gcgcgcccgc ccgccctc gctcgctcgc chr7:18217992-18218072 14 1.81e-03 ctgcacccgg ccCCCCTC TTTCTAAGGT chr3:195636614-195636694 69 1.81e-03 GGGAGTCGGC CCGCCCTC TTAA chr19:46367465-46367545 31 1.81e-03 TCCGAGCGCG CCGCCCTC GGGGAGGCGG chr2:61922155-61922235 36 1.81e-03 TTTCGCCCCC CCGCCCTC AGGCTGGCTG chr19:1315776-1315856 22 1.81e-03 CCCCGACCCC CCGCCCTC TCTGGCCCCC chr11:32914488-32914568 66 1.99e-03 GAGGGGGCAG CTccctcc accgccg chr21:27107914-27107994 67 1.99e-03 CCCCCCGCGG CCGCCTCT GTGTTT chr11:6495288-6495368 56 1.99e-03 ccTGCGGACG CTGCCTCC TTGGTGCTGC chr1:28995460-28995540 9 1.99e-03 ggGGGCTG CTGCCTCC GCGGGCGCCT chr6:33378615-33378695 17 2.03e-03 GGAGGGCCAG CCTCTTCT TCGGCGCCCT chr6:33266744-33266824 44 2.69e-03 GCCCTTTCCG CTCCCCCC CGCGTCCGCC chrX:122993644-122993724 24 2.69e-03 TTTTTTCTTA CTGCCCCC ATCCGGTTCG chr11:65292270-65292350 51 2.69e-03 CCGGACTgcc ccgcccct ccctagcccc chr7:150573981-150574061 55 2.69e-03 CGCCGCTGAG ctcccccc accccccgcc chr12:7126128-7126208 4 2.69e-03 TCG CTGCCTTC CCATTGGCTG chr19:30335726-30335806 16 2.69e-03 aggggcgggg ccgCCCCT TGCGGGGGGG chr5:154237727-154237807 62 2.69e-03 CTAGACCACG CCCCTTCC TTGTTCGCTC chr11:96074984-96075064 27 2.69e-03 GCCCCAGAGG CCCCCCCT AGCCCTCCTG chrX:47003871-47003951 67 3.20e-03 GTTCTGGGGG CCGCTTTC CCGCCA chr1:156052294-156052374 51 3.20e-03 TTGTAGTTTC CCGCCCTT GGGGGCGCGG chr11:1715392-1715472 50 3.20e-03 GCAGCTCTGA CCCCTCCC GCTGCGCTCC chr1:230202664-230202744 58 3.20e-03 ACGCGGCAGT CCCCTccc gcggcccgcg chr11:66139370-66139450 16 3.20e-03 CCCCGCACAG CCCCTCCC CGCAGCCCCC chr6:32143843-32143923 31 3.20e-03 TCCCCCGCCA CCCCTCCC CAACGCCTGC chr9:134269304-134269384 38 3.20e-03 CCCAAGGCCG CCGCTCCC GGGAGGCGCG chr1:31501218-31501298 32 3.49e-03 CAATCTAAGA CTCCCTTT GCCATTGGCG chr12:53441094-53441174 6 3.49e-03 GGCGG CTCCCCCT GCTGCTgccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBCCYCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:1532826-1532906 4.4e-05 7_[+2]_65 chr11:62539067-62539147 4.4e-05 27_[+2]_45 chr19:40791166-40791246 4.4e-05 52_[+2]_20 chrX:48900945-48901025 4.4e-05 34_[+2]_38 chr20:48925322-48925402 4.4e-05 38_[+2]_34 chr11:119455072-11945515 4.4e-05 57_[+2]_15 chr6:15248964-15249044 4.4e-05 47_[+2]_25 chr3:171758201-171758281 4.4e-05 55_[+2]_17 chr19:3359564-3359644 4.4e-05 30_[+2]_42 chr6:143999006-143999086 4.4e-05 11_[+2]_61 chr3:193857448-193857528 4.4e-05 10_[+2]_62 chr20:57466352-57466432 4.4e-05 20_[+2]_52 chr11:126225431-12622551 4.4e-05 29_[+2]_43 chr1:2136274-2136354 4.4e-05 24_[+2]_48 chr18:45534684-45534764 0.00019 65_[+2]_7 chr1:61545641-61545721 0.00019 38_[+2]_34 chr17:75136885-75136965 0.00019 14_[+2]_58 chr11:33279737-33279817 0.00019 19_[+2]_53 chr19:36208831-36208911 0.00019 51_[+2]_21 chr15:74340886-74340966 0.00019 38_[+2]_34 chr6:33395832-33395912 0.00019 28_[+2]_44 chr2:48133777-48133857 0.00019 69_[+2]_3 chrX:139015281-139015361 0.00019 3_[+2]_69 chr11:8932627-8932707 0.00019 4_[+2]_68 chr17:71307259-71307339 0.00019 22_[+2]_50 chr22:35874017-35874097 0.00019 39_[+2]_33 chr19:46919809-46919889 0.00019 9_[+2]_63 chr19:55795315-55795395 0.00019 1_[+2]_71 chr17:2497179-2497259 0.00019 53_[+2]_19 chrX:73513400-73513480 0.00019 54_[+2]_18 chr9:130547769-130547849 0.00019 40_[+2]_32 chr19:17356878-17356958 0.00019 43_[+2]_29 chr7:6676878-6676958 0.00019 28_[+2]_44 chr11:110167342-11016742 0.00019 48_[+2]_24 chr13:22033492-22033572 0.00019 30_[+2]_42 chr14:55032670-55032750 0.00019 19_[+2]_53 chr12:54813089-54813169 0.00019 2_[+2]_70 chr1:19811992-19812072 0.00019 56_[+2]_16 chr19:45578722-45578802 0.00019 33_[+2]_39 chr19:45251733-45251813 0.00019 4_[+2]_68 chr19:47249729-47249809 0.00019 29_[+2]_43 chr19:41107153-41107233 0.00019 55_[+2]_17 chr17:40829013-40829093 0.00023 48_[+2]_24 chr12:123849513-12384959 0.00023 11_[+2]_61 chr13:30424751-30424831 0.00023 61_[+2]_11 chr17:47439631-47439711 0.00023 60_[+2]_12 chr15:44829067-44829147 0.00023 47_[+2]_25 chr19:10341998-10342078 0.00026 56_[+2]_16 chr2:109150833-109150913 0.00026 63_[+2]_9 chr19:46012597-46012677 0.00026 3_[+2]_69 chr14:45366447-45366527 0.00026 46_[+2]_26 chr7:100292061-100292141 0.00052 40_[+2]_32 chr3:194207596-194207676 0.00052 52_[+2]_20 chr2:145089898-145089978 0.00052 59_[+2]_13 chr10:32667771-32667851 0.00052 6_[+2]_66 chr7:73703622-73703702 0.00052 60_[+2]_12 chrX:70586001-70586081 0.00052 41_[+2]_31 chr1:41826855-41826935 0.00052 15_[+2]_57 chr18:72921169-72921249 0.00052 15_[+2]_57 chr2:171627425-171627505 0.00052 17_[+2]_55 chr6:37673376-37673456 0.00052 39_[+2]_33 chr21:40721045-40721125 0.00052 23_[+2]_49 chr1:31558038-31558118 0.00052 29_[+2]_43 chr6:3457387-3457467 0.00052 55_[+2]_17 chr19:50094542-50094622 0.00052 23_[+2]_49 chr14:50809644-50809724 0.00052 61_[+2]_11 chrX:154299596-154299676 0.00052 13_[+2]_59 chr20:60718719-60718799 0.00052 61_[+2]_11 chr17:42201076-42201156 0.00063 41_[+2]_31 chr17:20946525-20946605 0.00063 58_[+2]_14 chr19:5128793-5128873 0.00063 24_[+2]_48 chr16:68119067-68119147 0.00063 71_[+2]_1 chr14:71822775-71822855 0.0015 48_[+2]_24 chrX:24043655-24043735 0.0015 29_[+2]_43 chr18:43678332-43678412 0.0015 8_[+2]_64 chr7:73256935-73257015 0.0015 41_[+2]_31 chr1:25943140-25943220 0.0015 9_[+2]_63 chr12:48206932-48207012 0.0015 34_[+2]_38 chr1:38471180-38471260 0.0015 65_[+2]_7 chr2:46926252-46926332 0.0015 37_[+2]_35 chr20:31350029-31350109 0.0015 37_[+2]_35 chr5:178054178-178054258 0.0015 42_[+2]_30 chr1:179198812-179198892 0.0015 35_[+2]_37 chr10:75634408-75634488 0.0015 3_[+2]_69 chr16:67840886-67840966 0.0015 57_[+2]_15 chr11:61659075-61659155 0.0015 7_[+2]_65 chr20:48729656-48729736 0.0015 47_[+2]_25 chr16:1458236-1458316 0.0015 27_[+2]_45 chr5:150036292-150036372 0.0015 30_[+2]_42 chr19:14201706-14201786 0.0015 30_[+2]_42 chr11:86747234-86747314 0.0015 61_[+2]_11 chr15:85291721-85291801 0.0015 55_[+2]_17 chr17:41177136-41177216 0.0015 8_[+2]_64 chr19:38806640-38806720 0.0015 54_[+2]_18 chr16:710912-710992 0.0015 51_[+2]_21 chr4:160025118-160025198 0.0015 36_[+2]_36 chr16:1821734-1821814 0.0015 65_[+2]_7 chr19:15560762-15560842 0.0015 20_[+2]_52 chr5:139167686-139167766 0.0015 67_[+2]_5 chr21:38338990-38339070 0.0015 33_[+2]_39 chr14:23356151-23356231 0.0015 37_[+2]_35 chr9:19230410-19230490 0.0015 11_[+2]_61 chr16:617170-617250 0.0015 35_[+2]_37 chr21:40759551-40759631 0.0015 68_[+2]_4 chr1:875639-875719 0.0015 40_[+2]_32 chr20:57227386-57227466 0.0015 44_[+2]_28 chr6:35457958-35458038 0.0015 9_[+2]_63 chr16:89066260-89066340 0.0015 43_[+2]_29 chr22:42840770-42840850 0.0016 40_[+2]_32 chr11:57417402-57417482 0.0018 37_[+2]_35 chr3:182511142-182511222 0.0018 11_[+2]_61 chr9:114246177-114246257 0.0018 53_[+2]_19 chr7:18217992-18218072 0.0018 13_[+2]_59 chr3:195636614-195636694 0.0018 68_[+2]_4 chr19:46367465-46367545 0.0018 30_[+2]_42 chr2:61922155-61922235 0.0018 35_[+2]_37 chr19:1315776-1315856 0.0018 21_[+2]_51 chr11:32914488-32914568 0.002 65_[+2]_7 chr21:27107914-27107994 0.002 66_[+2]_6 chr11:6495288-6495368 0.002 55_[+2]_17 chr1:28995460-28995540 0.002 8_[+2]_64 chr6:33378615-33378695 0.002 16_[+2]_56 chr6:33266744-33266824 0.0027 43_[+2]_29 chrX:122993644-122993724 0.0027 23_[+2]_49 chr11:65292270-65292350 0.0027 50_[+2]_22 chr7:150573981-150574061 0.0027 54_[+2]_18 chr12:7126128-7126208 0.0027 3_[+2]_69 chr19:30335726-30335806 0.0027 15_[+2]_57 chr5:154237727-154237807 0.0027 61_[+2]_11 chr11:96074984-96075064 0.0027 26_[+2]_46 chrX:47003871-47003951 0.0032 66_[+2]_6 chr1:156052294-156052374 0.0032 50_[+2]_22 chr11:1715392-1715472 0.0032 49_[+2]_23 chr1:230202664-230202744 0.0032 57_[+2]_15 chr11:66139370-66139450 0.0032 15_[+2]_57 chr6:32143843-32143923 0.0032 30_[+2]_42 chr9:134269304-134269384 0.0032 37_[+2]_35 chr1:31501218-31501298 0.0035 31_[+2]_41 chr12:53441094-53441174 0.0035 5_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBCCYCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCBCCYCC width=8 seqs=139 chr1:1532826-1532906 ( 8) CCTCCTCC 1 chr11:62539067-62539147 ( 28) CCTCCTCC 1 chr19:40791166-40791246 ( 53) CCTCCTCC 1 chrX:48900945-48901025 ( 35) CCTCCTCC 1 chr20:48925322-48925402 ( 39) CCTCCTCC 1 chr11:119455072-11945515 ( 58) CCTCCTCC 1 chr6:15248964-15249044 ( 48) CCTCCTCC 1 chr3:171758201-171758281 ( 56) CCTCCTCC 1 chr19:3359564-3359644 ( 31) CCTCCTCC 1 chr6:143999006-143999086 ( 12) CCTCCTCC 1 chr3:193857448-193857528 ( 11) CCTCCTCC 1 chr20:57466352-57466432 ( 21) CCTCCTCC 1 chr11:126225431-12622551 ( 30) CCTCCTCC 1 chr1:2136274-2136354 ( 25) CCTCCTCC 1 chr18:45534684-45534764 ( 66) CCTCCCCC 1 chr1:61545641-61545721 ( 39) CCTCCCCC 1 chr17:75136885-75136965 ( 15) CCTCCCCC 1 chr11:33279737-33279817 ( 20) CCTCCCCC 1 chr19:36208831-36208911 ( 52) CCTCCCCC 1 chr15:74340886-74340966 ( 39) CCTCCCCC 1 chr6:33395832-33395912 ( 29) CCTCCCCC 1 chr2:48133777-48133857 ( 70) CCTCCCCC 1 chrX:139015281-139015361 ( 4) CCTCCCCC 1 chr11:8932627-8932707 ( 5) CCTCCCCC 1 chr17:71307259-71307339 ( 23) CCTCCCCC 1 chr22:35874017-35874097 ( 40) CCTCCTTC 1 chr19:46919809-46919889 ( 10) CCTCCCCC 1 chr19:55795315-55795395 ( 2) CCTCCCCC 1 chr17:2497179-2497259 ( 54) CCTCCCCC 1 chrX:73513400-73513480 ( 55) CCTCCCCC 1 chr9:130547769-130547849 ( 41) CCTCCCCC 1 chr19:17356878-17356958 ( 44) CCTCCCCC 1 chr7:6676878-6676958 ( 29) CCTCCCCC 1 chr11:110167342-11016742 ( 49) CCTCCCCC 1 chr13:22033492-22033572 ( 31) CCTCCCCC 1 chr14:55032670-55032750 ( 20) CCTCCCCC 1 chr12:54813089-54813169 ( 3) CCTCCCCC 1 chr1:19811992-19812072 ( 57) CCTCCCCC 1 chr19:45578722-45578802 ( 34) CCTCCTTC 1 chr19:45251733-45251813 ( 5) CCTCCCCC 1 chr19:47249729-47249809 ( 30) CCTCCCCC 1 chr19:41107153-41107233 ( 56) CCTCCCCC 1 chr17:40829013-40829093 ( 49) CCTCCCTC 1 chr12:123849513-12384959 ( 12) CCTCCCTC 1 chr13:30424751-30424831 ( 62) CCTCCCTC 1 chr17:47439631-47439711 ( 61) CCTCCCTC 1 chr15:44829067-44829147 ( 48) CCTCCCTC 1 chr19:10341998-10342078 ( 57) CCTCCTCT 1 chr2:109150833-109150913 ( 64) CTTCCTCC 1 chr19:46012597-46012677 ( 4) CTTCCTCC 1 chr14:45366447-45366527 ( 47) CTTCCTCC 1 chr7:100292061-100292141 ( 41) CCCCCTCC 1 chr3:194207596-194207676 ( 53) CCCCCTCC 1 chr2:145089898-145089978 ( 60) CCGCCTCC 1 chr10:32667771-32667851 ( 7) CCGCCTCC 1 chr7:73703622-73703702 ( 61) CCCCCTCC 1 chrX:70586001-70586081 ( 42) CCCCCTCC 1 chr1:41826855-41826935 ( 16) CCGCCTCC 1 chr18:72921169-72921249 ( 16) CCGCCTCC 1 chr2:171627425-171627505 ( 18) CCGCCTCC 1 chr6:37673376-37673456 ( 40) CCCCCTCC 1 chr21:40721045-40721125 ( 24) CCCCCTCC 1 chr1:31558038-31558118 ( 30) CCCCCTCC 1 chr6:3457387-3457467 ( 56) CCCCCTCC 1 chr19:50094542-50094622 ( 24) CCCCCTCC 1 chr14:50809644-50809724 ( 62) CCCCCTCC 1 chrX:154299596-154299676 ( 14) CCCCCTCC 1 chr20:60718719-60718799 ( 62) CCCCCTCC 1 chr17:42201076-42201156 ( 42) CCTCCCCT 1 chr17:20946525-20946605 ( 59) CCTCCCCT 1 chr19:5128793-5128873 ( 25) CCTCCCCT 1 chr16:68119067-68119147 ( 72) CTTCCTTC 1 chr14:71822775-71822855 ( 49) CCCCCTTC 1 chrX:24043655-24043735 ( 30) CCCCCCCC 1 chr18:43678332-43678412 ( 9) CCGCCCCC 1 chr7:73256935-73257015 ( 42) CCCCCCCC 1 chr1:25943140-25943220 ( 10) CCGCCCCC 1 chr12:48206932-48207012 ( 35) CCCCCTTC 1 chr1:38471180-38471260 ( 66) CCGCCCCC 1 chr2:46926252-46926332 ( 38) CCGCCCCC 1 chr20:31350029-31350109 ( 38) CCGCCCCC 1 chr5:178054178-178054258 ( 43) CCCCCCCC 1 chr1:179198812-179198892 ( 36) CCGCCCCC 1 chr10:75634408-75634488 ( 4) CCCCCCCC 1 chr16:67840886-67840966 ( 58) CCGCCCCC 1 chr11:61659075-61659155 ( 8) CCGCCCCC 1 chr20:48729656-48729736 ( 48) CCCCCCCC 1 chr16:1458236-1458316 ( 28) CCCCCCCC 1 chr5:150036292-150036372 ( 31) CCGCCCCC 1 chr19:14201706-14201786 ( 31) CCGCCCCC 1 chr11:86747234-86747314 ( 62) CCGCCCCC 1 chr15:85291721-85291801 ( 56) CCGCCCCC 1 chr17:41177136-41177216 ( 9) CCGCCCCC 1 chr19:38806640-38806720 ( 55) CCCCCCCC 1 chr16:710912-710992 ( 52) CCGCCCCC 1 chr4:160025118-160025198 ( 37) CCGCCCCC 1 chr16:1821734-1821814 ( 66) CCCCCCCC 1 chr19:15560762-15560842 ( 21) CCGCCCCC 1 chr5:139167686-139167766 ( 68) CCCCCCCC 1 chr21:38338990-38339070 ( 34) CCGCCCCC 1 chr14:23356151-23356231 ( 38) CCGCCCCC 1 chr9:19230410-19230490 ( 12) CCGCCCCC 1 chr16:617170-617250 ( 36) CCGCCCCC 1 chr21:40759551-40759631 ( 69) CCCCCCCC 1 chr1:875639-875719 ( 41) CCCCCCCC 1 chr20:57227386-57227466 ( 45) CCCCCCCC 1 chr6:35457958-35458038 ( 10) CCCCCTTC 1 chr16:89066260-89066340 ( 44) CCGCCCCC 1 chr22:42840770-42840850 ( 41) CCTCCCTT 1 chr11:57417402-57417482 ( 38) CCCCCCTC 1 chr3:182511142-182511222 ( 12) CCCCCCTC 1 chr9:114246177-114246257 ( 54) CCGCCCTC 1 chr7:18217992-18218072 ( 14) CCCCCCTC 1 chr3:195636614-195636694 ( 69) CCGCCCTC 1 chr19:46367465-46367545 ( 31) CCGCCCTC 1 chr2:61922155-61922235 ( 36) CCGCCCTC 1 chr19:1315776-1315856 ( 22) CCGCCCTC 1 chr11:32914488-32914568 ( 66) CTCCCTCC 1 chr21:27107914-27107994 ( 67) CCGCCTCT 1 chr11:6495288-6495368 ( 56) CTGCCTCC 1 chr1:28995460-28995540 ( 9) CTGCCTCC 1 chr6:33378615-33378695 ( 17) CCTCTTCT 1 chr6:33266744-33266824 ( 44) CTCCCCCC 1 chrX:122993644-122993724 ( 24) CTGCCCCC 1 chr11:65292270-65292350 ( 51) CCGCCCCT 1 chr7:150573981-150574061 ( 55) CTCCCCCC 1 chr12:7126128-7126208 ( 4) CTGCCTTC 1 chr19:30335726-30335806 ( 16) CCGCCCCT 1 chr5:154237727-154237807 ( 62) CCCCTTCC 1 chr11:96074984-96075064 ( 27) CCCCCCCT 1 chrX:47003871-47003951 ( 67) CCGCTTTC 1 chr1:156052294-156052374 ( 51) CCGCCCTT 1 chr11:1715392-1715472 ( 50) CCCCTCCC 1 chr1:230202664-230202744 ( 58) CCCCTCCC 1 chr11:66139370-66139450 ( 16) CCCCTCCC 1 chr6:32143843-32143923 ( 31) CCCCTCCC 1 chr9:134269304-134269384 ( 38) CCGCTCCC 1 chr1:31501218-31501298 ( 32) CTCCCTTT 1 chr12:53441094-53441174 ( 6) CTCCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBCCYCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.41261 E= 9.8e-012 -1376 142 -1376 -1376 -1376 128 -1376 -45 -1376 -34 -34 168 -1376 142 -1376 -1376 -1376 134 -1376 -115 -1376 78 -1376 149 -1376 115 -1376 43 -1376 128 -1376 -45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBCCYCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 139 E= 9.8e-012 0.000000 1.000000 0.000000 0.000000 0.000000 0.906475 0.000000 0.093525 0.000000 0.294964 0.294964 0.410072 0.000000 1.000000 0.000000 0.000000 0.000000 0.942446 0.000000 0.057554 0.000000 0.640288 0.000000 0.359712 0.000000 0.827338 0.000000 0.172662 0.000000 0.906475 0.000000 0.093525 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBCCYCC MEME-2 regular expression -------------------------------------------------------------------------------- CC[TCG]CC[CT]CC -------------------------------------------------------------------------------- Time 9.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGMGGGG MEME-3 width = 8 sites = 103 llr = 713 E-value = 3.2e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGMGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3::11 pos.-specific C :::4:::: probability G aaa:aa99 matrix T :::2:::: bits 3.0 2.7 2.4 2.1 Relative 1.8 Entropy 1.5 *** ** (10.0 bits) 1.2 *** **** 0.9 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGGCGGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:42614584-42614664 60 1.27e-04 ggcggcgggg gggagggg cgggtagcgg chr11:64949175-64949255 59 1.27e-04 GGCCTGCGGA GGGAGGGG CGGGGAGACA chr22:37956354-37956434 21 1.27e-04 gagggggccg gggagggg gccgggcccc chrX:44732339-44732419 46 1.27e-04 CAGCCGGGCG GGGAGGGG GGGTCACGGC chr2:145089898-145089978 33 1.27e-04 gcgggcgccg gggagggg aggggagggg chr1:25943140-25943220 57 1.27e-04 CGGCGGCggc gggagggg gcgcggggcg chr6:33480124-33480204 69 1.27e-04 AGTCATCACA GGGAGGGG GGCA chr10:75634408-75634488 37 1.27e-04 cccgccccCG GGGAGGGG CCTcccgccg chr12:57916357-57916437 40 1.27e-04 GGGGTTGTGG GGGAGGGG TAGGCGCGCT chr2:10588495-10588575 63 1.27e-04 ACAccgccgg gggagggg cgggggcccg chr12:116715542-11671562 48 1.27e-04 gggcgggcgg gggagggg tccggagtgg chr7:5463479-5463559 36 1.27e-04 AGGGGGTTGG GGGAGGGG GAGCCCTCTC chr9:6008374-6008454 2 1.27e-04 g gggagggg cagggagaga chr3:15901374-15901454 62 1.27e-04 CTACCGCGAC GGGAGGGG CATgcggagg chr19:46367465-46367545 47 1.27e-04 TCGGGGAGGC GGGAGGGG AGCCCGGGGC chr19:38146397-38146477 48 1.27e-04 GCTCCGGGCC GGGAGGGG CGCGTGGGGC chr16:88767471-88767551 33 1.27e-04 AGATGAAGAC GGGAGGGG AGGGAGGCGC chr9:19230410-19230490 37 1.27e-04 GAAAGGGAGA GGGAGGGG GAAAAGAAAG chr10:22609941-22610021 44 1.27e-04 gggcggcggg gggagggg gcgggcggAC chr3:50654535-50654615 10 1.27e-04 gggggggtg gggagggg ggggaggTCA chr2:225450182-225450262 20 1.27e-04 gtgggaggac gggagggg gagCCCGGCG chr5:102898507-102898587 22 1.27e-04 gggggggggc gggagggg ggcccccgcg chr4:41216655-41216735 17 1.27e-04 GGACCCGGCG GGGAGGGG GCCGAATGGG chr16:432018-432098 48 1.27e-04 ggacgccggg gggagggg tcacgtgggg chr10:30638265-30638345 18 1.27e-04 TGCGTCGGGG GGGAGGGG GGGGGCAAAA chr19:45251733-45251813 46 1.27e-04 gccgcgggcc gggagggg gcaagcgggg chr16:54964528-54964608 59 1.27e-04 gcgggcgcta gggagggg cgagaggagc chr14:45366447-45366527 20 1.27e-04 GGGGGTTGGG GGGAGGGG GGCGGAGGTC chr18:45534684-45534764 43 2.55e-04 ccagggctgg gggtgggg cgCGCccccg chr11:62380109-62380189 63 2.55e-04 CGGCTCCCGG GGGTGGGG TGGCAGGGCC chr1:244211798-244211878 48 2.55e-04 GGCGGACTGA GGGTGGGG GGAACATCTG chr3:178865962-178866042 12 2.55e-04 GGGGCCGAGG GGGTGGGG AAGAGTTCGT chr4:1723039-1723119 63 2.55e-04 CCCGAGCGGG GGGTGGGG GGGGAGGGAG chr15:101142600-10114268 34 2.55e-04 GGCAGGCAGA GGGTGGGG GCTGCCGGGG chr1:166136242-166136322 49 2.55e-04 TAATGTGTAA GGGTGGGG GTGTTTAAAG chr3:195636614-195636694 44 2.55e-04 CGCCGCCCCG GGGTGGGG GGTGGGGGGG chr6:4136112-4136192 7 2.55e-04 gctcgg gggtgggg ccgggggggt chr15:86338237-86338317 59 2.55e-04 CGGCACCGgg gggtgggg ggccgggggc chr19:4067196-4067276 42 2.55e-04 ggTGGAGGGG GGGTGGGG GCCTCCAGAT chr5:154237727-154237807 31 2.55e-04 cacggcgggg gggtgggg gggggcgcTA chr21:38338990-38339070 60 2.55e-04 GGCggcgcgg gggtgggg acggcggggg chr15:66993430-66993510 8 2.55e-04 gcgccgg gggtgggg ccgccgcgcg chr14:105266703-10526678 42 2.55e-04 gggcccggcc gggtgggg cggACAGGGA chr2:139259377-139259457 38 2.55e-04 cgcggcgggg gggtgggg gctgcgcggg chr7:44787926-44788006 57 2.55e-04 cgggcggggc gggtgggg gaagggcaag chr16:85496215-85496295 61 6.30e-04 CGgggagcgc gggcgggg gagggcggcg chr16:11890890-11890970 31 6.30e-04 cgcgcggggg gggcgggg gcgcgggcgc chr17:56160671-56160751 59 6.30e-04 cgcggcgggg gggcgggg gcggggcACT chr10:12084906-12084986 30 6.30e-04 CTGAGAGTGG GGGCGGGG CGGAAGGAGG chrX:24043655-24043735 7 6.30e-04 CGTTGG GGGCGGGG AGCTGGCCCG chr19:18058945-18059025 49 6.30e-04 CATGGGGGCG GGGCGGGG AAACCGGTTC chr8:57124046-57124126 69 6.30e-04 GGGCGCGGTG GGGCGGGG GAAG chr17:42201076-42201156 70 6.30e-04 cctccccGCC GGGCGGGG CCA chr1:27320036-27320116 48 6.30e-04 gggggggggg gggcgggg cggATTCAGG chr2:63277800-63277880 17 6.30e-04 gggcggggga gggcgggg GCGCGCGGAG chr20:31350029-31350109 63 6.30e-04 ccccgcgccc gggcgggg ATCTGAGTGG chr6:33395832-33395912 19 6.30e-04 CCCCGCGCAG GGGCGGGG CCCCTCCCCC chr11:34937885-34937965 65 6.30e-04 GGCAgcccgg gggcgggg cgaacggg chr8:144649485-144649565 10 6.30e-04 GTgggggcc gggcgggg cgcggggcgA chr6:28186716-28186796 44 6.30e-04 CCCGTGGGGG GGGCGGGG GGAGCGGAAG chr16:1458236-1458316 60 6.30e-04 GTTCCCACGG GGGCGGGG CTTCACACGT chr19:13962119-13962199 41 6.30e-04 GAGTCACACA GGGCGGGG TCCCCCGTTA chr17:1953321-1953401 36 6.30e-04 gcgggggggc gggcgggg cggcgggggc chr1:41826855-41826935 36 6.30e-04 GCCGAGCAGG GGGCGGGG TCGCGCCAGC chr5:10701713-10701793 4 6.30e-04 GGG GGGCGGGG GGGCAGTGGG chr10:51572197-51572277 3 6.30e-04 CC GGGCGGGG GCAGCAGGCG chr8:125384913-125384993 68 6.30e-04 AGGTGCGGGG GGGCGGGG AGGTG chr2:61922155-61922235 8 6.30e-04 GAGAAAG GGGCGGGG CAAACCCTGG chr17:41177136-41177216 67 6.30e-04 gcctggctgg gggcgggg cggagg chr17:42385893-42385973 8 6.30e-04 TGCTGGG GGGCGGGG CCCGAGGGCC chr1:202936441-202936521 64 6.30e-04 tgtctgtcgg gggcgggg cctagcagg chr3:13035633-13035713 32 6.30e-04 gggcgcgggg gggcgggg gcgggcgcTC chr19:39695594-39695674 60 6.30e-04 CCTCGTGGTG GGGCGGGG GGGGGCAGGT chr8:145691249-145691329 17 6.30e-04 tggctgcgag gggcgggg cctgggcggg chr7:6676878-6676958 51 6.30e-04 ggcgcgggcg gggcgggg ccggccggcg chr19:30335726-30335806 8 6.30e-04 gaggtag gggcgggg ccgCCCCTTG chr22:50624145-50624225 42 6.30e-04 gggggggggg gggcgggg gccccgcgcg chr12:118558797-11855887 21 6.30e-04 TGGGGCGGGG GGGCGGGG TGACTCACTT chr3:42055004-42055084 54 6.30e-04 gcggggcggc gggcgggg cTGGGAAGGG chr9:110252167-110252247 42 6.30e-04 GCGCACGTGg gggcgggg gaggggaagg chr16:89066260-89066340 6 6.30e-04 gcggg gggcgggg ggcggagggc chr4:39979227-39979307 59 6.30e-04 AGTGAGCGCT GGGCGGGG AGACAGTGCC chr17:27916743-27916823 34 6.30e-04 GGGCAGGAGG GGGCGGGG GCGCTTAAAG chr8:141645842-141645922 36 6.30e-04 ctgggcgcgc gggcgggg tccgcggcgg chr1:61545641-61545721 60 6.73e-04 CCCTCCGCGG GGGAGGGA GCGGGAGCTG chr22:36424969-36425049 38 6.73e-04 gaaagaggga gggaggga gggaCCGGGA chr19:17356878-17356958 4 6.73e-04 ggc gggaggga cgggggccga chr20:62284957-62285037 21 6.73e-04 gagggaggaa gggaggga ggaagagaga chr19:41107153-41107233 10 6.73e-04 cggccgccg gggAGGGA GTGGTGAGGA chr4:88157032-88157112 18 7.15e-04 CGGGTCGGTG GGGAGGAG GGTGCGGGGG chr19:42788461-42788541 61 7.15e-04 GACTCCGCGA GGGAGGAG GGAGAGGGAG chr16:672310-672390 27 7.59e-04 CAGGGCGTGC GGGTGGGA GCAGCGCCAA chr12:53774053-53774133 57 7.59e-04 CCAAGCTTAg gggtggga ggcgagtgag chr22:41215378-41215458 27 9.29e-04 CCGGGTCGCG GGGCGGGA AAGCGGGGGG chr1:182931791-182931871 71 9.29e-04 CCAAAGGGCT GGGTGGAG CC chrX:54556547-54556627 70 1.06e-03 ACCGCACGGT GGGCGGAG TCG chr20:25176287-25176367 59 1.06e-03 CACGTGCATG GGGCGGAG CCCAGGCCCT chr6:45389687-45389767 39 1.07e-03 CAGCCGCCGC GGGAGGAA TCTGAGCGTG chr1:31501218-31501298 49 1.44e-03 TGCCATTGGC GGGGGGGG TGGGTTGGGG chr1:205198696-205198776 4 1.44e-03 ggc gggggggg AAGGTGGATT chr19:10341998-10342078 13 1.44e-03 GAGGGACAGA GGGGGGGG CGGAGAGCCG chr17:20946525-20946605 32 1.44e-03 AAGCGTGGTA GGGGGGGG AAGCTAACGA chr19:4910287-4910367 65 1.44e-03 gcacgcgcgc gggggggg ccggcAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:42614584-42614664 0.00013 59_[+3]_13 chr11:64949175-64949255 0.00013 58_[+3]_14 chr22:37956354-37956434 0.00013 20_[+3]_52 chrX:44732339-44732419 0.00013 45_[+3]_27 chr2:145089898-145089978 0.00013 32_[+3]_40 chr1:25943140-25943220 0.00013 56_[+3]_16 chr6:33480124-33480204 0.00013 68_[+3]_4 chr10:75634408-75634488 0.00013 36_[+3]_36 chr12:57916357-57916437 0.00013 39_[+3]_33 chr2:10588495-10588575 0.00013 62_[+3]_10 chr12:116715542-11671562 0.00013 47_[+3]_25 chr7:5463479-5463559 0.00013 35_[+3]_37 chr9:6008374-6008454 0.00013 1_[+3]_71 chr3:15901374-15901454 0.00013 61_[+3]_11 chr19:46367465-46367545 0.00013 46_[+3]_26 chr19:38146397-38146477 0.00013 47_[+3]_25 chr16:88767471-88767551 0.00013 32_[+3]_40 chr9:19230410-19230490 0.00013 36_[+3]_36 chr10:22609941-22610021 0.00013 43_[+3]_29 chr3:50654535-50654615 0.00013 9_[+3]_63 chr2:225450182-225450262 0.00013 19_[+3]_53 chr5:102898507-102898587 0.00013 21_[+3]_51 chr4:41216655-41216735 0.00013 16_[+3]_56 chr16:432018-432098 0.00013 47_[+3]_25 chr10:30638265-30638345 0.00013 17_[+3]_55 chr19:45251733-45251813 0.00013 45_[+3]_27 chr16:54964528-54964608 0.00013 58_[+3]_14 chr14:45366447-45366527 0.00013 19_[+3]_53 chr18:45534684-45534764 0.00026 42_[+3]_30 chr11:62380109-62380189 0.00026 62_[+3]_10 chr1:244211798-244211878 0.00026 47_[+3]_25 chr3:178865962-178866042 0.00026 11_[+3]_61 chr4:1723039-1723119 0.00026 62_[+3]_10 chr15:101142600-10114268 0.00026 33_[+3]_39 chr1:166136242-166136322 0.00026 48_[+3]_24 chr3:195636614-195636694 0.00026 43_[+3]_29 chr6:4136112-4136192 0.00026 6_[+3]_66 chr15:86338237-86338317 0.00026 58_[+3]_14 chr19:4067196-4067276 0.00026 41_[+3]_31 chr5:154237727-154237807 0.00026 30_[+3]_42 chr21:38338990-38339070 0.00026 59_[+3]_13 chr15:66993430-66993510 0.00026 7_[+3]_65 chr14:105266703-10526678 0.00026 41_[+3]_31 chr2:139259377-139259457 0.00026 37_[+3]_35 chr7:44787926-44788006 0.00026 56_[+3]_16 chr16:85496215-85496295 0.00063 60_[+3]_12 chr16:11890890-11890970 0.00063 30_[+3]_42 chr17:56160671-56160751 0.00063 58_[+3]_14 chr10:12084906-12084986 0.00063 29_[+3]_43 chrX:24043655-24043735 0.00063 6_[+3]_66 chr19:18058945-18059025 0.00063 48_[+3]_24 chr8:57124046-57124126 0.00063 68_[+3]_4 chr17:42201076-42201156 0.00063 69_[+3]_3 chr1:27320036-27320116 0.00063 47_[+3]_25 chr2:63277800-63277880 0.00063 16_[+3]_56 chr20:31350029-31350109 0.00063 62_[+3]_10 chr6:33395832-33395912 0.00063 18_[+3]_54 chr11:34937885-34937965 0.00063 64_[+3]_8 chr8:144649485-144649565 0.00063 9_[+3]_63 chr6:28186716-28186796 0.00063 43_[+3]_29 chr16:1458236-1458316 0.00063 59_[+3]_13 chr19:13962119-13962199 0.00063 40_[+3]_32 chr17:1953321-1953401 0.00063 35_[+3]_37 chr1:41826855-41826935 0.00063 35_[+3]_37 chr5:10701713-10701793 0.00063 3_[+3]_69 chr10:51572197-51572277 0.00063 2_[+3]_70 chr8:125384913-125384993 0.00063 67_[+3]_5 chr2:61922155-61922235 0.00063 7_[+3]_65 chr17:41177136-41177216 0.00063 66_[+3]_6 chr17:42385893-42385973 0.00063 7_[+3]_65 chr1:202936441-202936521 0.00063 63_[+3]_9 chr3:13035633-13035713 0.00063 31_[+3]_41 chr19:39695594-39695674 0.00063 59_[+3]_13 chr8:145691249-145691329 0.00063 16_[+3]_56 chr7:6676878-6676958 0.00063 50_[+3]_22 chr19:30335726-30335806 0.00063 7_[+3]_65 chr22:50624145-50624225 0.00063 41_[+3]_31 chr12:118558797-11855887 0.00063 20_[+3]_52 chr3:42055004-42055084 0.00063 53_[+3]_19 chr9:110252167-110252247 0.00063 41_[+3]_31 chr16:89066260-89066340 0.00063 5_[+3]_67 chr4:39979227-39979307 0.00063 58_[+3]_14 chr17:27916743-27916823 0.00063 33_[+3]_39 chr8:141645842-141645922 0.00063 35_[+3]_37 chr1:61545641-61545721 0.00067 59_[+3]_13 chr22:36424969-36425049 0.00067 37_[+3]_35 chr19:17356878-17356958 0.00067 3_[+3]_69 chr20:62284957-62285037 0.00067 20_[+3]_52 chr19:41107153-41107233 0.00067 9_[+3]_63 chr4:88157032-88157112 0.00072 17_[+3]_55 chr19:42788461-42788541 0.00072 60_[+3]_12 chr16:672310-672390 0.00076 26_[+3]_46 chr12:53774053-53774133 0.00076 56_[+3]_16 chr22:41215378-41215458 0.00093 26_[+3]_46 chr1:182931791-182931871 0.00093 70_[+3]_2 chrX:54556547-54556627 0.0011 69_[+3]_3 chr20:25176287-25176367 0.0011 58_[+3]_14 chr6:45389687-45389767 0.0011 38_[+3]_34 chr1:31501218-31501298 0.0014 48_[+3]_24 chr1:205198696-205198776 0.0014 3_[+3]_69 chr19:10341998-10342078 0.0014 12_[+3]_60 chr17:20946525-20946605 0.0014 31_[+3]_41 chr19:4910287-4910367 0.0014 64_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGMGGGG width=8 seqs=103 chr13:42614584-42614664 ( 60) GGGAGGGG 1 chr11:64949175-64949255 ( 59) GGGAGGGG 1 chr22:37956354-37956434 ( 21) GGGAGGGG 1 chrX:44732339-44732419 ( 46) GGGAGGGG 1 chr2:145089898-145089978 ( 33) GGGAGGGG 1 chr1:25943140-25943220 ( 57) GGGAGGGG 1 chr6:33480124-33480204 ( 69) GGGAGGGG 1 chr10:75634408-75634488 ( 37) GGGAGGGG 1 chr12:57916357-57916437 ( 40) GGGAGGGG 1 chr2:10588495-10588575 ( 63) GGGAGGGG 1 chr12:116715542-11671562 ( 48) GGGAGGGG 1 chr7:5463479-5463559 ( 36) GGGAGGGG 1 chr9:6008374-6008454 ( 2) GGGAGGGG 1 chr3:15901374-15901454 ( 62) GGGAGGGG 1 chr19:46367465-46367545 ( 47) GGGAGGGG 1 chr19:38146397-38146477 ( 48) GGGAGGGG 1 chr16:88767471-88767551 ( 33) GGGAGGGG 1 chr9:19230410-19230490 ( 37) GGGAGGGG 1 chr10:22609941-22610021 ( 44) GGGAGGGG 1 chr3:50654535-50654615 ( 10) GGGAGGGG 1 chr2:225450182-225450262 ( 20) GGGAGGGG 1 chr5:102898507-102898587 ( 22) GGGAGGGG 1 chr4:41216655-41216735 ( 17) GGGAGGGG 1 chr16:432018-432098 ( 48) GGGAGGGG 1 chr10:30638265-30638345 ( 18) GGGAGGGG 1 chr19:45251733-45251813 ( 46) GGGAGGGG 1 chr16:54964528-54964608 ( 59) GGGAGGGG 1 chr14:45366447-45366527 ( 20) GGGAGGGG 1 chr18:45534684-45534764 ( 43) GGGTGGGG 1 chr11:62380109-62380189 ( 63) GGGTGGGG 1 chr1:244211798-244211878 ( 48) GGGTGGGG 1 chr3:178865962-178866042 ( 12) GGGTGGGG 1 chr4:1723039-1723119 ( 63) GGGTGGGG 1 chr15:101142600-10114268 ( 34) GGGTGGGG 1 chr1:166136242-166136322 ( 49) GGGTGGGG 1 chr3:195636614-195636694 ( 44) GGGTGGGG 1 chr6:4136112-4136192 ( 7) GGGTGGGG 1 chr15:86338237-86338317 ( 59) GGGTGGGG 1 chr19:4067196-4067276 ( 42) GGGTGGGG 1 chr5:154237727-154237807 ( 31) GGGTGGGG 1 chr21:38338990-38339070 ( 60) GGGTGGGG 1 chr15:66993430-66993510 ( 8) GGGTGGGG 1 chr14:105266703-10526678 ( 42) GGGTGGGG 1 chr2:139259377-139259457 ( 38) GGGTGGGG 1 chr7:44787926-44788006 ( 57) GGGTGGGG 1 chr16:85496215-85496295 ( 61) GGGCGGGG 1 chr16:11890890-11890970 ( 31) GGGCGGGG 1 chr17:56160671-56160751 ( 59) GGGCGGGG 1 chr10:12084906-12084986 ( 30) GGGCGGGG 1 chrX:24043655-24043735 ( 7) GGGCGGGG 1 chr19:18058945-18059025 ( 49) GGGCGGGG 1 chr8:57124046-57124126 ( 69) GGGCGGGG 1 chr17:42201076-42201156 ( 70) GGGCGGGG 1 chr1:27320036-27320116 ( 48) GGGCGGGG 1 chr2:63277800-63277880 ( 17) GGGCGGGG 1 chr20:31350029-31350109 ( 63) GGGCGGGG 1 chr6:33395832-33395912 ( 19) GGGCGGGG 1 chr11:34937885-34937965 ( 65) GGGCGGGG 1 chr8:144649485-144649565 ( 10) GGGCGGGG 1 chr6:28186716-28186796 ( 44) GGGCGGGG 1 chr16:1458236-1458316 ( 60) GGGCGGGG 1 chr19:13962119-13962199 ( 41) GGGCGGGG 1 chr17:1953321-1953401 ( 36) GGGCGGGG 1 chr1:41826855-41826935 ( 36) GGGCGGGG 1 chr5:10701713-10701793 ( 4) GGGCGGGG 1 chr10:51572197-51572277 ( 3) GGGCGGGG 1 chr8:125384913-125384993 ( 68) GGGCGGGG 1 chr2:61922155-61922235 ( 8) GGGCGGGG 1 chr17:41177136-41177216 ( 67) GGGCGGGG 1 chr17:42385893-42385973 ( 8) GGGCGGGG 1 chr1:202936441-202936521 ( 64) GGGCGGGG 1 chr3:13035633-13035713 ( 32) GGGCGGGG 1 chr19:39695594-39695674 ( 60) GGGCGGGG 1 chr8:145691249-145691329 ( 17) GGGCGGGG 1 chr7:6676878-6676958 ( 51) GGGCGGGG 1 chr19:30335726-30335806 ( 8) GGGCGGGG 1 chr22:50624145-50624225 ( 42) GGGCGGGG 1 chr12:118558797-11855887 ( 21) GGGCGGGG 1 chr3:42055004-42055084 ( 54) GGGCGGGG 1 chr9:110252167-110252247 ( 42) GGGCGGGG 1 chr16:89066260-89066340 ( 6) GGGCGGGG 1 chr4:39979227-39979307 ( 59) GGGCGGGG 1 chr17:27916743-27916823 ( 34) GGGCGGGG 1 chr8:141645842-141645922 ( 36) GGGCGGGG 1 chr1:61545641-61545721 ( 60) GGGAGGGA 1 chr22:36424969-36425049 ( 38) GGGAGGGA 1 chr19:17356878-17356958 ( 4) GGGAGGGA 1 chr20:62284957-62285037 ( 21) GGGAGGGA 1 chr19:41107153-41107233 ( 10) GGGAGGGA 1 chr4:88157032-88157112 ( 18) GGGAGGAG 1 chr19:42788461-42788541 ( 61) GGGAGGAG 1 chr16:672310-672390 ( 27) GGGTGGGA 1 chr12:53774053-53774133 ( 57) GGGTGGGA 1 chr22:41215378-41215458 ( 27) GGGCGGGA 1 chr1:182931791-182931871 ( 71) GGGTGGAG 1 chrX:54556547-54556627 ( 70) GGGCGGAG 1 chr20:25176287-25176367 ( 59) GGGCGGAG 1 chr6:45389687-45389767 ( 39) GGGAGGAA 1 chr1:31501218-31501298 ( 49) GGGGGGGG 1 chr1:205198696-205198776 ( 4) GGGGGGGG 1 chr19:10341998-10342078 ( 13) GGGGGGGG 1 chr17:20946525-20946605 ( 32) GGGGGGGG 1 chr19:4910287-4910367 ( 65) GGGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.62213 E= 3.2e-022 -1333 -1333 142 -1333 -1333 -1333 142 -1333 -1333 -1333 142 -1333 147 13 -294 60 -1333 -1333 142 -1333 -1333 -1333 142 -1333 -111 -1333 134 -1333 -53 -1333 129 -1333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 3.2e-022 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.349515 0.407767 0.048544 0.194175 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.058252 0.000000 0.941748 0.000000 0.087379 0.000000 0.912621 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGG MEME-3 regular expression -------------------------------------------------------------------------------- GGG[CA]GGGG -------------------------------------------------------------------------------- Time 12.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTYYWA MEME-4 width = 8 sites = 20 llr = 204 E-value = 1.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTYYWA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:::124a pos.-specific C 1:2:531: probability G :1:2:11: matrix T 9a994561 bits 3.0 2.7 * * 2.4 * * 2.1 **** * Relative 1.8 **** * Entropy 1.5 **** ** (14.8 bits) 1.2 **** ** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTTTCTTA consensus TCA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYYWA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:43678332-43678412 50 7.09e-08 AGGTTACTTA TTTTTTTA TGTAACATTT chr11:86747234-86747314 22 7.09e-08 ttctgggaag ttttttta aaaacaggaa chrX:122993644-122993724 16 4.17e-07 GGGCCTCATT TTTTCTTA CTGCCCCCAT chr3:193857448-193857528 55 4.17e-07 CTAACCCCCC TTTTCTTA GACCGGCTTC chr10:32667771-32667851 61 2.52e-06 TACACTGGGC TTTTAAAA GCACAGCCAC chr11:33279737-33279817 67 2.93e-06 CAACCGAAGT TTTGTTTA GTCCCA chr3:178865962-178866042 32 2.93e-06 GAGTTCGTTG TTTGTTTA CACGATGTGA chr1:46219355-46219435 3 3.87e-06 ac ttttccaa atatggtaaa chr11:64949175-64949255 14 4.07e-06 CTGCTCTGCC TTTTACTA ATTTGTCCTC chrX:70586001-70586081 1 7.32e-06 . TTCTCTTA GGATAGCCGG chr10:134368896-13436897 1 7.52e-06 . TTTTTGAA CTTCTGATAA chr20:31350029-31350109 18 1.20e-05 GCTCCGAGCG ATTTCAAA TTTCCCTCGT chr1:31501218-31501298 6 1.39e-05 TGACA TTTTCTGA TTAGCAGCCA chrX:47003871-47003951 2 1.69e-05 C TTCTCATA CAAGTTTTCG chr17:75136885-75136965 28 2.01e-05 CCCCCCTCCC CTTTCTTA GCAACCATCG chr22:42840770-42840850 27 2.36e-05 agcaaaaccg tttgtcaa ccatttcctc chr5:154237727-154237807 4 2.87e-05 GGA TTTTTCCA ggccgcgccc chr1:166136242-166136322 58 3.01e-05 AGGGTGGGGG TGTTTAAA GGGCCGCTAG chr20:49498709-49498789 6 4.51e-05 accca atctctta aaaaaaaaaG chr2:46926252-46926332 60 4.79e-05 ccgggAGGTA TTTTCCAT TCTGGTGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYYWA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:43678332-43678412 7.1e-08 49_[+4]_23 chr11:86747234-86747314 7.1e-08 21_[+4]_51 chrX:122993644-122993724 4.2e-07 15_[+4]_57 chr3:193857448-193857528 4.2e-07 54_[+4]_18 chr10:32667771-32667851 2.5e-06 60_[+4]_12 chr11:33279737-33279817 2.9e-06 66_[+4]_6 chr3:178865962-178866042 2.9e-06 31_[+4]_41 chr1:46219355-46219435 3.9e-06 2_[+4]_70 chr11:64949175-64949255 4.1e-06 13_[+4]_59 chrX:70586001-70586081 7.3e-06 [+4]_72 chr10:134368896-13436897 7.5e-06 [+4]_72 chr20:31350029-31350109 1.2e-05 17_[+4]_55 chr1:31501218-31501298 1.4e-05 5_[+4]_67 chrX:47003871-47003951 1.7e-05 1_[+4]_71 chr17:75136885-75136965 2e-05 27_[+4]_45 chr22:42840770-42840850 2.4e-05 26_[+4]_46 chr5:154237727-154237807 2.9e-05 3_[+4]_69 chr1:166136242-166136322 3e-05 57_[+4]_15 chr20:49498709-49498789 4.5e-05 5_[+4]_67 chr2:46926252-46926332 4.8e-05 59_[+4]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYYWA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTYYWA width=8 seqs=20 chr18:43678332-43678412 ( 50) TTTTTTTA 1 chr11:86747234-86747314 ( 22) TTTTTTTA 1 chrX:122993644-122993724 ( 16) TTTTCTTA 1 chr3:193857448-193857528 ( 55) TTTTCTTA 1 chr10:32667771-32667851 ( 61) TTTTAAAA 1 chr11:33279737-33279817 ( 67) TTTGTTTA 1 chr3:178865962-178866042 ( 32) TTTGTTTA 1 chr1:46219355-46219435 ( 3) TTTTCCAA 1 chr11:64949175-64949255 ( 14) TTTTACTA 1 chrX:70586001-70586081 ( 1) TTCTCTTA 1 chr10:134368896-13436897 ( 1) TTTTTGAA 1 chr20:31350029-31350109 ( 18) ATTTCAAA 1 chr1:31501218-31501298 ( 6) TTTTCTGA 1 chrX:47003871-47003951 ( 2) TTCTCATA 1 chr17:75136885-75136965 ( 28) CTTTCTTA 1 chr22:42840770-42840850 ( 27) TTTGTCAA 1 chr5:154237727-154237807 ( 4) TTTTTCCA 1 chr1:166136242-166136322 ( 58) TGTTTAAA 1 chr20:49498709-49498789 ( 6) ATCTCTTA 1 chr2:46926252-46926332 ( 60) TTTTCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYYWA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6697 E= 1.9e-008 -33 -290 -1097 273 -1097 -1097 -289 289 -1097 -131 -1097 273 -1097 -1097 -131 273 -33 42 -1097 165 66 -58 -289 197 147 -290 -289 211 291 -1097 -1097 -135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYYWA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.9e-008 0.100000 0.050000 0.000000 0.850000 0.000000 0.000000 0.050000 0.950000 0.000000 0.150000 0.000000 0.850000 0.000000 0.000000 0.150000 0.850000 0.100000 0.500000 0.000000 0.400000 0.200000 0.250000 0.050000 0.500000 0.350000 0.050000 0.050000 0.550000 0.950000 0.000000 0.000000 0.050000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYYWA MEME-4 regular expression -------------------------------------------------------------------------------- TTTT[CT][TCA][TA]A -------------------------------------------------------------------------------- Time 15.89 secs. ******************************************************************************** ******************************************************************************** MOTIF TKCAGTKW MEME-5 width = 8 sites = 21 llr = 194 E-value = 1.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKCAGTKW MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::29:2:5 pos.-specific C ::5::::: probability G :4::8:4: matrix T a6212865 bits 3.0 * 2.7 * 2.4 * * * 2.1 * * * * Relative 1.8 * * * * Entropy 1.5 * * * * (13.3 bits) 1.2 ** * *** 0.9 ** ***** 0.6 ** ***** 0.3 ******** 0.0 -------- Multilevel TTCAGTTT consensus GA GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCAGTKW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:43678332-43678412 68 4.04e-07 TGTAACATTT TTAAGTTT AAACC chr5:43105623-43105703 9 2.70e-06 CGGTAACC TTCATTTT CGGGGGGGCG chr1:205198696-205198776 47 5.45e-06 GAGCCAGAGG TTAAGATA GTGCTTGGAG chr11:62539067-62539147 13 1.21e-05 GTGACCCAAG TTCAGTGA CCCCTGACCT chr1:156052294-156052374 42 1.21e-05 TGCCGGGAGT TGTAGTTT CCCGCCCTTG chr17:46662769-46662849 31 1.21e-05 AGAGGGAGAG TTCAGTGT CCCAACGATG chr5:102898507-102898587 53 1.21e-05 TTATGGGAGA TGTAGTTT GAAGCCCACA chr10:94350629-94350709 23 1.73e-05 GAGCTGTAGA TGCAGTTA TTTCCTTGGG chr7:18217992-18218072 42 1.99e-05 GGCTTATCTA TTCATTGA ACAACAAACA chr11:86747234-86747314 73 2.34e-05 cgcccccccg tttttttt chr3:178865962-178866042 67 2.42e-05 AAGAGACCAA TAAAGTTT ATTCTG chr19:55795315-55795395 21 2.75e-05 tccGAAAGGG TTAACTTT GGGGAAGGGC chr8:57124046-57124126 36 3.21e-05 AGCCGAAGTG TTAAGAGA CGGGCCGCGG chr1:46219355-46219435 62 3.42e-05 GCAGGTAGGA TTGATTTA CAACTTTTAC chr1:61545641-61545721 24 4.05e-05 AACTGTGCTT TGTAGTGT TCCCCCGCCT chr2:46926252-46926332 10 5.68e-05 AGGCTGCCC TTCAGAGA GGCGTGCCCC chr10:32667771-32667851 32 5.68e-05 CGGAAAAAAA TGCAGTGT GTGTGCCATT chr9:130324276-130324356 22 5.68e-05 GAGCCCGGGG TGCAGTGA GTCATGAGCT chr21:40759551-40759631 7 5.68e-05 CTGCGC TGCAGTGA ACACGCTGCG chr10:134368896-13436897 10 8.34e-05 TTTTTGAAC TTCTGATA AGTTGCCTGG chr9:19230410-19230490 55 8.34e-05 GAAAAGAAAG TGCTGTTT TGTGGAAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCAGTKW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:43678332-43678412 4e-07 67_[+5]_5 chr5:43105623-43105703 2.7e-06 8_[+5]_64 chr1:205198696-205198776 5.4e-06 46_[+5]_26 chr11:62539067-62539147 1.2e-05 12_[+5]_60 chr1:156052294-156052374 1.2e-05 41_[+5]_31 chr17:46662769-46662849 1.2e-05 30_[+5]_42 chr5:102898507-102898587 1.2e-05 52_[+5]_20 chr10:94350629-94350709 1.7e-05 22_[+5]_50 chr7:18217992-18218072 2e-05 41_[+5]_31 chr11:86747234-86747314 2.3e-05 72_[+5] chr3:178865962-178866042 2.4e-05 66_[+5]_6 chr19:55795315-55795395 2.8e-05 20_[+5]_52 chr8:57124046-57124126 3.2e-05 35_[+5]_37 chr1:46219355-46219435 3.4e-05 61_[+5]_11 chr1:61545641-61545721 4.1e-05 23_[+5]_49 chr2:46926252-46926332 5.7e-05 9_[+5]_63 chr10:32667771-32667851 5.7e-05 31_[+5]_41 chr9:130324276-130324356 5.7e-05 21_[+5]_51 chr21:40759551-40759631 5.7e-05 6_[+5]_66 chr10:134368896-13436897 8.3e-05 9_[+5]_63 chr9:19230410-19230490 8.3e-05 54_[+5]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCAGTKW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKCAGTKW width=8 seqs=21 chr18:43678332-43678412 ( 68) TTAAGTTT 1 chr5:43105623-43105703 ( 9) TTCATTTT 1 chr1:205198696-205198776 ( 47) TTAAGATA 1 chr11:62539067-62539147 ( 13) TTCAGTGA 1 chr1:156052294-156052374 ( 42) TGTAGTTT 1 chr17:46662769-46662849 ( 31) TTCAGTGT 1 chr5:102898507-102898587 ( 53) TGTAGTTT 1 chr10:94350629-94350709 ( 23) TGCAGTTA 1 chr7:18217992-18218072 ( 42) TTCATTGA 1 chr11:86747234-86747314 ( 73) TTTTTTTT 1 chr3:178865962-178866042 ( 67) TAAAGTTT 1 chr19:55795315-55795395 ( 21) TTAACTTT 1 chr8:57124046-57124126 ( 36) TTAAGAGA 1 chr1:46219355-46219435 ( 62) TTGATTTA 1 chr1:61545641-61545721 ( 24) TGTAGTGT 1 chr2:46926252-46926332 ( 10) TTCAGAGA 1 chr10:32667771-32667851 ( 32) TGCAGTGT 1 chr9:130324276-130324356 ( 22) TGCAGTGA 1 chr21:40759551-40759631 ( 7) TGCAGTGA 1 chr10:134368896-13436897 ( 10) TTCTGATA 1 chr9:19230410-19230490 ( 55) TGCTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCAGTKW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 1.1e+000 -1104 -1104 -1104 297 -140 -1104 3 216 92 49 -296 58 276 -1104 -1104 16 -1104 -297 103 58 59 -1104 -1104 266 -1104 -1104 20 216 192 -1104 -1104 203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCAGTKW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.1e+000 0.000000 0.000000 0.000000 1.000000 0.047619 0.000000 0.380952 0.571429 0.238095 0.523810 0.047619 0.190476 0.857143 0.000000 0.000000 0.142857 0.000000 0.047619 0.761905 0.190476 0.190476 0.000000 0.000000 0.809524 0.000000 0.000000 0.428571 0.571429 0.476190 0.000000 0.000000 0.523810 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCAGTKW MEME-5 regular expression -------------------------------------------------------------------------------- T[TG][CA]AGT[TG][TA] -------------------------------------------------------------------------------- Time 19.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:2136274-2136354 2.90e-01 24_[+2(4.41e-05)]_48 chr7:44787926-44788006 3.24e-01 80 chr14:45366447-45366527 3.31e-05 56_[+1(6.99e-06)]_16 chr8:141645842-141645922 4.48e-01 80 chr17:27916743-27916823 5.83e-03 5_[+1(4.64e-05)]_67 chr1:182931791-182931871 2.42e-02 80 chr4:39979227-39979307 8.98e-02 80 chr16:89066260-89066340 7.13e-03 80 chr19:41107153-41107233 1.72e-02 80 chr19:47249729-47249809 4.20e-02 80 chr16:54964528-54964608 1.45e-02 11_[+1(4.64e-05)]_61 chr19:4910287-4910367 8.47e-01 80 chr19:45251733-45251813 3.50e-02 80 chr11:126225431-12622551 1.34e-01 29_[+2(4.41e-05)]_43 chr1:28995460-28995540 7.21e-01 80 chr10:30638265-30638345 1.21e-03 31_[+1(2.74e-06)]_41 chr19:45578722-45578802 3.99e-01 80 chr6:35457958-35458038 1.98e-01 80 chr19:46012597-46012677 3.44e-01 80 chr16:432018-432098 1.60e-01 80 chr4:41216655-41216735 2.56e-02 80 chr16:75032824-75032904 5.17e-02 80 chr9:115249315-115249395 2.07e-01 80 chr20:57466352-57466432 1.18e-01 17_[+2(4.41e-05)]_55 chr20:60718719-60718799 5.89e-01 80 chr11:96074984-96075064 6.30e-01 80 chr19:344583-344663 8.98e-01 80 chr2:139259377-139259457 5.56e-01 80 chr5:102898507-102898587 3.62e-04 52_[+5(1.21e-05)]_20 chr11:6495288-6495368 3.78e-01 80 chr2:225450182-225450262 2.83e-02 80 chr20:57227386-57227466 6.66e-01 80 chr10:94350629-94350709 2.92e-04 22_[+5(1.73e-05)]_50 chr15:44829067-44829147 1.17e-02 80 chr1:875639-875719 5.75e-01 80 chrX:154299596-154299676 6.39e-01 80 chr3:50654535-50654615 9.66e-02 80 chr21:40759551-40759631 3.53e-02 6_[+5(5.68e-05)]_66 chr10:22609941-22610021 1.05e-02 80 chr20:49498709-49498789 4.19e-06 12_[+1(6.35e-08)]_60 chr16:617170-617250 1.68e-01 80 chr9:19230410-19230490 5.11e-07 28_[+1(9.85e-05)]_9_[+1(2.74e-06)]_\ 1_[+5(8.34e-05)]_18 chr14:105266703-10526678 1.43e-01 80 chr1:19811992-19812072 5.12e-02 80 chr14:50809644-50809724 4.01e-02 80 chr15:66993430-66993510 1.59e-01 80 chr3:193857448-193857528 6.89e-06 10_[+2(4.41e-05)]_36_[+4(4.17e-07)]_\ 18 chr6:45389687-45389767 2.11e-01 80 chr3:193859269-193859349 4.98e-01 80 chr14:23356151-23356231 5.55e-01 80 chr9:110252167-110252247 1.88e-02 80 chr3:42055004-42055084 1.26e-01 80 chr12:118558797-11855887 4.68e-02 80 chr12:54813089-54813169 1.86e-01 80 chr22:50624145-50624225 4.04e-02 80 chr16:88767471-88767551 1.17e-02 80 chr16:68119067-68119147 5.24e-02 80 chr17:78962877-78962957 3.76e-01 80 chr19:1315776-1315856 5.04e-01 80 chr21:38338990-38339070 8.60e-02 80 chr14:55032670-55032750 5.03e-01 80 chr13:22033492-22033572 5.63e-01 80 chr5:154237727-154237807 1.19e-03 3_[+4(2.87e-05)]_69 chr19:5128793-5128873 5.77e-03 80 chr19:42788461-42788541 6.55e-02 80 chr4:38665505-38665585 3.64e-02 80 chr22:41215378-41215458 3.11e-01 80 chr19:50094542-50094622 1.45e-02 80 chr17:55333879-55333959 9.24e-01 80 chr11:110167342-11016742 1.25e-01 80 chr19:30335726-30335806 1.09e-01 80 chr19:38146397-38146477 4.02e-01 80 chr9:134269304-134269384 6.24e-01 80 chr20:25176287-25176367 6.19e-01 80 chr6:33378615-33378695 4.53e-02 80 chr5:139167686-139167766 3.05e-02 80 chr19:4067196-4067276 5.64e-02 80 chr20:62284957-62285037 1.18e-02 30_[+1(1.91e-05)]_42 chr6:3457387-3457467 1.39e-01 80 chr2:109150833-109150913 4.04e-01 80 chr6:32143843-32143923 4.09e-01 80 chr7:6676878-6676958 7.41e-02 80 chr19:17356878-17356958 2.94e-02 80 chr19:15560762-15560842 8.65e-01 80 chr18:42259023-42259103 3.44e-02 80 chr8:145691249-145691329 5.15e-02 80 chr9:130547769-130547849 9.68e-05 47_[+4(3.82e-05)]_25 chr1:31558038-31558118 3.37e-02 80 chrX:73513400-73513480 1.99e-01 80 chr15:86338237-86338317 1.08e-03 18_[+1(6.99e-06)]_54 chr16:1821734-1821814 8.59e-01 80 chr19:39695594-39695674 1.42e-03 20_[+1(1.62e-05)]_6_[+1(9.85e-05)]_\ 38 chr17:47439631-47439711 3.51e-01 80 chr4:160025118-160025198 8.47e-01 80 chr2:26256631-26256711 4.99e-01 80 chr6:143999006-143999086 1.45e-01 11_[+2(4.41e-05)]_61 chr19:3359564-3359644 3.08e-01 30_[+2(4.41e-05)]_42 chr21:40721045-40721125 5.29e-01 80 chr9:130324276-130324356 1.34e-03 21_[+5(5.68e-05)]_22_[+1(5.84e-05)]_\ 21 chr6:37673376-37673456 2.43e-02 80 chr20:62258227-62258307 9.29e-01 80 chr17:2497179-2497259 5.06e-02 80 chr6:4136112-4136192 1.86e-01 80 chr16:710912-710992 7.75e-01 80 chr19:49149684-49149764 4.87e-02 13_[+1(8.59e-05)]_59 chr3:13035633-13035713 7.70e-01 80 chr19:55795315-55795395 3.96e-05 20_[+5(2.75e-05)]_43_[+1(2.32e-05)]_\ 1 chr3:52489515-52489595 4.35e-01 80 chr19:46919809-46919889 2.40e-02 80 chr1:202936441-202936521 5.39e-01 80 chr19:38806640-38806720 3.51e-01 80 chr17:42385893-42385973 3.81e-01 80 chr17:41177136-41177216 2.32e-01 80 chr2:171627425-171627505 5.56e-01 80 chr11:68079922-68080002 8.28e-01 80 chr4:88157032-88157112 3.00e-02 80 chr2:61922155-61922235 1.43e-01 80 chr8:125384913-125384993 6.21e-02 47_[+1(8.59e-05)]_25 chrX:54556547-54556627 1.93e-01 80 chr8:94928938-94929018 7.27e-02 80 chr19:46367465-46367545 5.42e-02 80 chr22:35874017-35874097 1.74e-02 80 chr21:27107914-27107994 4.54e-01 80 chr3:195636614-195636694 5.47e-02 80 chr10:51572197-51572277 2.59e-01 80 chr11:71751944-71752024 1.26e-02 15_[+1(1.40e-05)]_6_[+1(2.55e-06)]_\ 43 chr3:15901374-15901454 1.40e-01 80 chr9:6008374-6008454 8.98e-05 69_[+1(1.99e-06)]_3 chr12:7126128-7126208 4.00e-01 80 chr3:171758201-171758281 2.93e-01 55_[+2(4.41e-05)]_17 chr17:71307259-71307339 1.65e-01 80 chr7:5463479-5463559 5.67e-03 80 chr22:42840770-42840850 5.62e-05 26_[+4(2.36e-05)]_20_[+1(3.49e-05)]_\ 18 chr11:8932627-8932707 4.71e-01 80 chr5:10701713-10701793 3.03e-02 80 chr12:116715542-11671562 1.71e-01 80 chr6:15248964-15249044 2.63e-04 47_[+2(4.41e-05)]_25 chr18:72921169-72921249 7.59e-01 80 chr12:53441094-53441174 8.56e-01 80 chr17:20946525-20946605 3.52e-03 80 chr17:36861539-36861619 8.20e-01 80 chr1:41826855-41826935 6.60e-02 80 chrX:139015281-139015361 3.36e-01 80 chr10:134368896-13436897 3.10e-05 [+4(7.52e-06)]_1_[+5(8.34e-05)]_14_\ [+1(8.59e-05)]_41 chrX:70586001-70586081 6.92e-04 [+4(7.32e-06)]_72 chr15:85291721-85291801 9.18e-01 80 chr3:49591815-49591895 8.26e-02 80 chr17:1953321-1953401 5.28e-01 80 chr7:77166488-77166568 1.40e-01 80 chr17:46662769-46662849 1.53e-03 30_[+5(1.21e-05)]_42 chr11:66139370-66139450 1.39e-01 80 chr11:119455072-11945515 4.55e-03 57_[+2(4.41e-05)]_15 chr11:86747234-86747314 1.75e-06 21_[+4(7.09e-08)]_43_[+4(3.87e-06)] chr7:150573981-150574061 2.82e-01 80 chr12:53774053-53774133 8.93e-02 80 chr1:230202664-230202744 3.29e-01 80 chr2:10588495-10588575 2.00e-02 80 chr19:14201706-14201786 6.13e-02 80 chrX:39874281-39874361 3.37e-02 80 chr5:150036292-150036372 9.06e-01 80 chr5:85866267-85866347 9.93e-02 80 chr7:18217992-18218072 3.88e-04 20_[+4(2.87e-05)]_13_[+5(1.99e-05)]_\ 31 chr12:57916357-57916437 1.18e-02 80 chr19:13962119-13962199 2.87e-02 80 chr20:48925322-48925402 1.60e-01 38_[+2(4.41e-05)]_34 chr1:23881393-23881473 2.20e-01 80 chr2:48133777-48133857 7.56e-02 80 chr16:1458236-1458316 2.44e-01 80 chr11:65292270-65292350 7.26e-02 80 chr9:114246177-114246257 8.53e-01 80 chr13:30424751-30424831 1.17e-02 3_[+1(3.49e-05)]_69 chr7:73703622-73703702 3.53e-01 80 chr20:48729656-48729736 1.97e-01 80 chr6:28186716-28186796 7.61e-03 58_[+1(6.99e-06)]_14 chr19:10341998-10342078 5.69e-02 80 chr11:1715392-1715472 5.81e-01 80 chr16:672310-672390 2.85e-01 80 chr8:144649485-144649565 2.89e-01 80 chr12:123849513-12384959 2.36e-03 26_[+1(2.32e-05)]_46 chr17:40829013-40829093 1.66e-01 80 chr16:81478396-81478476 7.77e-01 80 chrX:48900945-48901025 1.26e-01 34_[+2(4.41e-05)]_16_[+2(4.41e-05)]_\ 14 chr1:46219355-46219435 3.09e-07 2_[+4(3.87e-06)]_22_[+1(4.40e-07)]_\ 21_[+5(3.42e-05)]_11 chr1:166136242-166136322 3.40e-04 57_[+4(3.01e-05)]_15 chr11:61659075-61659155 4.92e-01 80 chr11:34937885-34937965 5.48e-01 80 chr16:67840886-67840966 1.96e-01 80 chr10:75634408-75634488 1.54e-01 80 chr6:33480124-33480204 5.33e-02 80 chr6:33395832-33395912 5.35e-02 80 chr15:101142600-10114268 9.49e-03 53_[+1(5.84e-05)]_[+1(3.49e-05)]_11 chr1:179198812-179198892 5.68e-01 80 chr15:74340886-74340966 3.59e-01 80 chr19:40791166-40791246 2.35e-01 52_[+2(4.41e-05)]_20 chr10:32667771-32667851 9.50e-08 23_[+1(1.99e-06)]_[+5(5.68e-05)]_7_\ [+4(6.75e-05)]_6_[+4(2.52e-06)]_12 chr22:36424969-36425049 9.90e-03 25_[+1(1.40e-05)]_47 chr5:178054178-178054258 6.19e-01 80 chrX:122993644-122993724 4.46e-05 15_[+4(4.17e-07)]_57 chr19:36208831-36208911 4.67e-01 80 chr20:31350029-31350109 4.62e-04 17_[+4(1.20e-05)]_55 chr2:46926252-46926332 5.84e-04 9_[+5(5.68e-05)]_42_[+4(4.79e-05)]_\ 13 chr2:63277800-63277880 2.02e-01 80 chr1:38471180-38471260 1.61e-01 80 chr1:27320036-27320116 1.30e-01 80 chr12:48206932-48207012 6.52e-01 80 chr1:25943140-25943220 1.18e-01 80 chr17:42201076-42201156 1.75e-01 80 chr3:182511142-182511222 5.31e-01 80 chr5:10761535-10761615 2.62e-02 32_[+1(3.49e-05)]_40 chr7:105517123-105517203 5.29e-01 80 chr2:145089898-145089978 2.53e-02 80 chr1:205198696-205198776 1.25e-03 46_[+5(5.45e-06)]_26 chr7:73256935-73257015 1.50e-01 80 chr4:1723039-1723119 1.91e-02 80 chr22:32871180-32871260 9.38e-01 80 chr8:57124046-57124126 9.55e-04 35_[+5(3.21e-05)]_37 chr3:178865962-178866042 1.13e-07 31_[+4(2.93e-06)]_13_[+1(9.95e-06)]_\ 6_[+5(2.42e-05)]_6 chr3:194207596-194207676 1.72e-01 80 chrX:44732339-44732419 2.91e-01 80 chr1:156052294-156052374 1.74e-02 41_[+5(1.21e-05)]_31 chr1:244211798-244211878 5.91e-02 80 chr11:62380109-62380189 2.55e-01 80 chr18:29078047-29078127 1.16e-01 80 chr6:33266744-33266824 5.72e-01 80 chr22:37956354-37956434 8.98e-02 80 chr1:31501218-31501298 4.39e-05 5_[+4(1.39e-05)]_67 chr11:33279737-33279817 3.16e-05 66_[+4(2.93e-06)]_6 chr18:43678332-43678412 2.82e-07 26_[+5(2.19e-05)]_15_[+4(7.09e-08)]_\ 10_[+5(4.04e-07)]_5 chr17:75136885-75136965 6.45e-03 27_[+4(2.01e-05)]_45 chr19:18058945-18059025 1.22e-01 80 chr5:43105623-43105703 3.58e-05 8_[+5(2.70e-06)]_20_[+1(1.40e-05)]_\ 36 chr3:170076072-170076152 2.90e-01 80 chr1:205782202-205782282 7.70e-01 80 chr11:64949175-64949255 1.31e-05 13_[+4(4.07e-06)]_59 chrX:24043655-24043735 2.68e-01 80 chrX:47003871-47003951 6.54e-03 1_[+4(1.69e-05)]_71 chr11:57417402-57417482 5.06e-01 80 chr11:32914488-32914568 4.27e-01 80 chr1:61545641-61545721 4.08e-05 23_[+5(4.05e-05)]_49 chr10:12084906-12084986 4.67e-02 80 chr13:42614584-42614664 1.31e-01 80 chr17:56160671-56160751 1.37e-01 80 chr14:91527099-91527179 2.09e-01 80 chr18:45534684-45534764 7.93e-02 80 chr16:11890890-11890970 2.52e-01 80 chr16:85496215-85496295 1.26e-01 80 chr11:62539067-62539147 8.57e-04 12_[+5(1.21e-05)]_7_[+2(4.41e-05)]_\ 45 chr7:100292061-100292141 7.14e-01 80 chr14:71822775-71822855 1.36e-02 80 chr1:1532826-1532906 7.57e-03 7_[+2(4.41e-05)]_65 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************