******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TSC22D4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:10721596-10721676 1.0000 80 chr11:45000059-45000139 1.0000 80 chr21:40384902-40384982 1.0000 80 chr1:202593306-202593386 1.0000 80 chr22:22902755-22902835 1.0000 80 chr11:44811882-44811962 1.0000 80 chr1:7628870-7628950 1.0000 80 chr22:23394176-23394256 1.0000 80 chr21:39728415-39728495 1.0000 80 chr22:20847291-20847371 1.0000 80 chr9:123603693-123603773 1.0000 80 chr22:22308373-22308453 1.0000 80 chr1:36352366-36352446 1.0000 80 chr5:10670364-10670444 1.0000 80 chr8:142890038-142890118 1.0000 80 chr22:20744985-20745065 1.0000 80 chr1:48057602-48057682 1.0000 80 chr3:195511208-195511288 1.0000 80 chr22:20854937-20855017 1.0000 80 chr1:174141814-174141894 1.0000 80 chr22:22069728-22069808 1.0000 80 chr22:21430751-21430831 1.0000 80 chr21:43581691-43581771 1.0000 80 chr10:1265885-1265965 1.0000 80 chr19:6955279-6955359 1.0000 80 chr10:28673607-28673687 1.0000 80 chr22:21965125-21965205 1.0000 80 chr7:156291643-156291723 1.0000 80 chr22:22165915-22165995 1.0000 80 chr10:72720197-72720277 1.0000 80 chr22:23609394-23609474 1.0000 80 chr10:73192141-73192221 1.0000 80 chr11:33425049-33425129 1.0000 80 chr20:29607946-29608026 1.0000 80 chr1:207097025-207097105 1.0000 80 chr12:76401305-76401385 1.0000 80 chr21:42522616-42522696 1.0000 80 chr22:21936754-21936834 1.0000 80 chr1:226941415-226941495 1.0000 80 chr6:41422287-41422367 1.0000 80 chr13:93051260-93051340 1.0000 80 chr12:131975061-13197514 1.0000 80 chr5:517258-517338 1.0000 80 chr2:23644613-23644693 1.0000 80 chr12:131880108-13188018 1.0000 80 chr1:145118135-145118215 1.0000 80 chr1:19978194-19978274 1.0000 80 chr13:91400397-91400477 1.0000 80 chr13:90531314-90531394 1.0000 80 chr22:22070897-22070977 1.0000 80 chr11:69872084-69872164 1.0000 80 chr1:142785315-142785395 1.0000 80 chr3:13693636-13693716 1.0000 80 chr22:23118008-23118088 1.0000 80 chr8:10890807-10890887 1.0000 80 chr5:2439782-2439862 1.0000 80 chr1:4429234-4429314 1.0000 80 chr22:23539423-23539503 1.0000 80 chr17:7010784-7010864 1.0000 80 chr1:26095762-26095842 1.0000 80 chr6:1403696-1403776 1.0000 80 chr9:131006153-131006233 1.0000 80 chr20:26201912-26201992 1.0000 80 chr22:19919015-19919095 1.0000 80 chr22:22285591-22285671 1.0000 80 chr12:132053026-13205310 1.0000 80 chr4:7192092-7192172 1.0000 80 chr8:144031450-144031530 1.0000 80 chr17:63171210-63171290 1.0000 80 chr6:26702293-26702373 1.0000 80 chr21:43056257-43056337 1.0000 80 chr8:91484662-91484742 1.0000 80 chr22:23368158-23368238 1.0000 80 chr1:17052073-17052153 1.0000 80 chr22:19425433-19425513 1.0000 80 chr22:21046534-21046614 1.0000 80 chr22:22890366-22890446 1.0000 80 chr22:21010393-21010473 1.0000 80 chr1:246902333-246902413 1.0000 80 chr4:1499196-1499276 1.0000 80 chr6:31083184-31083264 1.0000 80 chr13:92171042-92171122 1.0000 80 chr22:22288985-22289065 1.0000 80 chr1:22662927-22663007 1.0000 80 chr16:9495148-9495228 1.0000 80 chr22:21963649-21963729 1.0000 80 chr10:44192089-44192169 1.0000 80 chr6:166162847-166162927 1.0000 80 chr15:42447206-42447286 1.0000 80 chr8:142565281-142565361 1.0000 80 chr21:41511789-41511869 1.0000 80 chr21:44083244-44083324 1.0000 80 chr1:53565600-53565680 1.0000 80 chr8:126626461-126626541 1.0000 80 chr22:22237133-22237213 1.0000 80 chr22:20769963-20770043 1.0000 80 chr6:33401805-33401885 1.0000 80 chr20:26054830-26054910 1.0000 80 chr5:1046927-1047007 1.0000 80 chr19:46463611-46463691 1.0000 80 chr4:200032-200112 1.0000 80 chr1:16597459-16597539 1.0000 80 chr12:122099856-12209993 1.0000 80 chr1:231578096-231578176 1.0000 80 chr11:134609487-13460956 1.0000 80 chr22:19404464-19404544 1.0000 80 chr16:87243432-87243512 1.0000 80 chr13:92039968-92040048 1.0000 80 chr22:23338763-23338843 1.0000 80 chr11:45630959-45631039 1.0000 80 chr12:124577815-12457789 1.0000 80 chr22:17124166-17124246 1.0000 80 chr6:14109690-14109770 1.0000 80 chr2:96730689-96730769 1.0000 80 chr22:22345789-22345869 1.0000 80 chr7:482920-483000 1.0000 80 chr4:6535946-6536026 1.0000 80 chr9:123604277-123604357 1.0000 80 chr22:20109353-20109433 1.0000 80 chr7:2657743-2657823 1.0000 80 chr17:72598494-72598574 1.0000 80 chr21:11070262-11070342 1.0000 80 chr22:21179689-21179769 1.0000 80 chr11:69656449-69656529 1.0000 80 chr10:14017375-14017455 1.0000 80 chr12:132642648-13264272 1.0000 80 chr8:676994-677074 1.0000 80 chr2:242890675-242890755 1.0000 80 chr22:20757705-20757785 1.0000 80 chr17:77995463-77995543 1.0000 80 chr17:70553689-70553769 1.0000 80 chr2:10508336-10508416 1.0000 80 chr21:11126949-11127029 1.0000 80 chr16:86338662-86338742 1.0000 80 chr4:5672176-5672256 1.0000 80 chr16:83030550-83030630 1.0000 80 chr16:87256101-87256181 1.0000 80 chr22:23119777-23119857 1.0000 80 chr12:133040366-13304044 1.0000 80 chr22:22691475-22691555 1.0000 80 chr21:11082707-11082787 1.0000 80 chr22:22072490-22072570 1.0000 80 chr16:58121452-58121532 1.0000 80 chr22:22791939-22792019 1.0000 80 chr19:7107243-7107323 1.0000 80 chr4:3716474-3716554 1.0000 80 chr1:54098522-54098602 1.0000 80 chr22:22305779-22305859 1.0000 80 chr6:35760885-35760965 1.0000 80 chr22:23393443-23393523 1.0000 80 chr22:22331415-22331495 1.0000 80 chr12:126162572-12616265 1.0000 80 chr6:42167911-42167991 1.0000 80 chr1:145292344-145292424 1.0000 80 chr21:11041560-11041640 1.0000 80 chr21:46462062-46462142 1.0000 80 chr12:113700480-11370056 1.0000 80 chr10:88413855-88413935 1.0000 80 chr12:108783437-10878351 1.0000 80 chr22:21929438-21929518 1.0000 80 chr22:22059960-22060040 1.0000 80 chr9:91673856-91673936 1.0000 80 chr12:48629210-48629290 1.0000 80 chr8:5930681-5930761 1.0000 80 chr3:195446929-195447009 1.0000 80 chr11:44723506-44723586 1.0000 80 chr6:138297867-138297947 1.0000 80 chr12:129123769-12912384 1.0000 80 chr12:108972761-10897284 1.0000 80 chr1:142804577-142804657 1.0000 80 chr21:11173267-11173347 1.0000 80 chr20:58262175-58262255 1.0000 80 chr22:22451603-22451683 1.0000 80 chr16:1083727-1083807 1.0000 80 chr6:4180405-4180485 1.0000 80 chr22:21959726-21959806 1.0000 80 chr1:226837052-226837132 1.0000 80 chr22:22158167-22158247 1.0000 80 chr21:11134949-11135029 1.0000 80 chr19:31192265-31192345 1.0000 80 chr22:19214082-19214162 1.0000 80 chr22:22280732-22280812 1.0000 80 chr22:22849187-22849267 1.0000 80 chr22:20957886-20957966 1.0000 80 chr6:166207963-166208043 1.0000 80 chr22:19516636-19516716 1.0000 80 chr1:22259129-22259209 1.0000 80 chr1:120626747-120626827 1.0000 80 chr2:96425478-96425558 1.0000 80 chr22:23434903-23434983 1.0000 80 chr22:20880629-20880709 1.0000 80 chr22:19413329-19413409 1.0000 80 chr19:7907088-7907168 1.0000 80 chr1:9120142-9120222 1.0000 80 chr3:46964881-46964961 1.0000 80 chr22:23008638-23008718 1.0000 80 chr21:43114207-43114287 1.0000 80 chr1:228702650-228702730 1.0000 80 chr22:22505844-22505924 1.0000 80 chr11:64147311-64147391 1.0000 80 chr22:22101710-22101790 1.0000 80 chr19:6229687-6229767 1.0000 80 chr22:21174915-21174995 1.0000 80 chr6:14065741-14065821 1.0000 80 chr17:38615382-38615462 1.0000 80 chr14:65640941-65641021 1.0000 80 chr11:43709154-43709234 1.0000 80 chr17:55726655-55726735 1.0000 80 chr16:23327987-23328067 1.0000 80 chr7:158041839-158041919 1.0000 80 chr1:35487926-35488006 1.0000 80 chr22:19570545-19570625 1.0000 80 chr1:214633852-214633932 1.0000 80 chr22:19825457-19825537 1.0000 80 chr12:132641083-13264116 1.0000 80 chr22:21373193-21373273 1.0000 80 chr8:12420759-12420839 1.0000 80 chr22:23342209-23342289 1.0000 80 chr22:20803849-20803929 1.0000 80 chr8:102406429-102406509 1.0000 80 chr6:26207657-26207737 1.0000 80 chr1:142792202-142792282 1.0000 80 chr1:38385446-38385526 1.0000 80 chr6:170830824-170830904 1.0000 80 chr11:126307726-12630780 1.0000 80 chr21:11119433-11119513 1.0000 80 chr21:11054831-11054911 1.0000 80 chr4:1498640-1498720 1.0000 80 chr7:148160504-148160584 1.0000 80 chr13:94009997-94010077 1.0000 80 chr12:114130412-11413049 1.0000 80 chr19:45562184-45562264 1.0000 80 chr10:82416298-82416378 1.0000 80 chr11:70633419-70633499 1.0000 80 chr12:111345972-11134605 1.0000 80 chr1:227937402-227937482 1.0000 80 chr2:39627261-39627341 1.0000 80 chr12:111133421-11113350 1.0000 80 chr7:150996958-150997038 1.0000 80 chr22:23539909-23539989 1.0000 80 chrX:151985316-151985396 1.0000 80 chr1:7667300-7667380 1.0000 80 chr17:72565270-72565350 1.0000 80 chr1:22598534-22598614 1.0000 80 chr1:7613253-7613333 1.0000 80 chr11:126029175-12602925 1.0000 80 chr11:34544561-34544641 1.0000 80 chr20:62175229-62175309 1.0000 80 chr22:19113951-19114031 1.0000 80 chr22:22407412-22407492 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TSC22D4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TSC22D4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.274 C 0.23 G 0.235 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.23 G 0.235 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-1 width = 8 sites = 60 llr = 550 E-value = 2.4e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::11:: pos.-specific C ::::1::1 probability G 2a1a19:a matrix T 8:a:8:a: bits 2.1 * 1.9 * * ** 1.7 *** ** 1.5 *** *** Relative 1.3 **** *** Entropy 1.1 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:126029175-12602925 57 1.39e-05 cttgtatgac tgtgtgtg tatggtgtct chr17:72565270-72565350 35 1.39e-05 atgtggtgta tgtgtgtg gtgtgtgtat chr22:23539909-23539989 42 1.39e-05 TTGGCAAAAG TGTGTGTG ATGGTCCAGT chr7:150996958-150997038 66 1.39e-05 tgcatgaatg tgtgtgtg catgtga chr1:227937402-227937482 38 1.39e-05 CTTGAGAGCC tgtgtgtg tgtctgtgtg chr10:82416298-82416378 28 1.39e-05 ggtgtttctg tgtgtgtg tctgtgtgtg chr12:114130412-11413049 50 1.39e-05 tgaatgagtg tgtgtgtg agtggagagt chr14:65640941-65641021 36 1.39e-05 tgtgtgtgat tgtgtgtg aattgtgtga chr6:14065741-14065821 51 1.39e-05 tgtctgtctc tgtgtgtg tgtgtgtatc chr11:64147311-64147391 66 1.39e-05 CAtgtgacag tgtgtgtg catgagt chr19:7907088-7907168 33 1.39e-05 tatgcatagg tgtgtgtg catcaagtgt chr1:226837052-226837132 46 1.39e-05 tgtgcatgag tgtgtgtg catgtgtgat chr21:46462062-46462142 13 1.39e-05 GTGGTTTATA TGTGTGTG ATTTATATAt chr4:3716474-3716554 36 1.39e-05 tctctgtgtg tgtgtgtg catgtgtgtg chr16:86338662-86338742 14 1.39e-05 tatgtgttta tgtgtgtg tatgtatgta chr2:10508336-10508416 30 1.39e-05 tatgcatgtg tgtgtgtg cattgtgtgt chr2:242890675-242890755 25 1.39e-05 tgcataatga tgtgtgtg tcttggtgtg chr10:14017375-14017455 23 1.39e-05 tttgtctctg tgtgtgtg tctgtgcata chr11:134609487-13460956 42 1.39e-05 gtgtgtggca tgtgtgtg gtgtgtggtg chr4:200032-200112 38 1.39e-05 tgtgtatgac tgtgtgtg actgtgtgac chr21:41511789-41511869 12 1.39e-05 gtatgtgtgt tgtgtgtg catgtggggt chr1:246902333-246902413 15 1.39e-05 tgagcaagtg tgtgtgtg tgattgtgtt chr17:63171210-63171290 34 1.39e-05 tgtatgtgag tgtgtgtg agtgtgcata chr9:131006153-131006233 70 1.39e-05 Ggtgtgtttg tgtgtgtg tgt chr2:23644613-23644693 15 1.39e-05 tgttcatgtg tgtgtgtg tgtctgtgtg chr6:41422287-41422367 54 1.39e-05 ctgtgagccg tgtgtgtg tctgtgagct chr21:42522616-42522696 28 1.39e-05 gtgtatatga tgtgtgtg cggtatgcaa chr10:73192141-73192221 22 1.39e-05 tgtgtgtttg tgtgtgtg tgagtgtgtg chr10:72720197-72720277 38 1.39e-05 gtgtgagaat tgtgtgtg agagcatgtg chr1:48057602-48057682 9 1.39e-05 gtgtgttg tgtgtgtg tagtgtgtgt chr1:36352366-36352446 66 1.39e-05 atacttcctg tgtgtgtg tcagaca chr11:44811882-44811962 18 1.39e-05 catgtgttgg tgtgtgtg ggtgcgtgca chr1:202593306-202593386 39 1.39e-05 atgtgtagga tgtgtgtg ctgtatgtgt chr11:45000059-45000139 37 1.39e-05 agagaatgtg tgtgtgtg acagtgtgtg chr1:7667300-7667380 47 2.65e-05 tggatggatg ggtgtgtg gatggttgga chr17:38615382-38615462 55 2.65e-05 gtgtatatgt ggtgtgtg catttgtgtg chr1:207097025-207097105 32 2.65e-05 aagtatgtgt ggtgtgtg tctgaggtgt chr20:29607946-29608026 31 2.65e-05 agtattccat ggtgtgtg aaatggtttg chr12:111345972-11134605 52 4.28e-05 tgtctgcacc tgtgtatg tctctgtgtg chr21:11173267-11173347 26 4.28e-05 tgtgtttctc tgtgtatg ccagtaacat chr1:54098522-54098602 18 4.28e-05 CCGAGAGGCA Tgtgtatg agtgtgactg chr10:44192089-44192169 67 4.28e-05 tgtgtatatg tgtgtatg tgagtg chr22:22407412-22407492 30 7.01e-05 ttgtattaat tgtgagtg ggagttcact chrX:151985316-151985396 57 8.24e-05 TATTCTTATG TGTGCGTG AATGCAAGAT chr8:126626461-126626541 32 8.24e-05 GTGAATAATA TGTGCGTG TGAGAGAGTT chr1:120626747-120626827 18 1.09e-04 tggttaattt tgtgtgtc aactttagcg chr21:11070262-11070342 60 1.09e-04 aaaaattagc tgggtgtg gtggtgggca chr17:72598494-72598574 66 1.09e-04 aatgggcccg tgtgtgtc tgtgtgt chr6:31083184-31083264 27 1.09e-04 TGAGAGGCAA TGGGTGTG TTGGGGACGG chr5:1046927-1047007 38 1.38e-04 tgagtgggtt agtgtgtg aatgagcggg chr21:11134949-11135029 53 1.49e-04 CTTTCTAGAA GGTGGGTG ATTTTTCAGT chr22:19404464-19404544 27 1.49e-04 gggaggctga ggtgggtg gatcacctga chr4:1499196-1499276 32 1.49e-04 tggatggatg ggtgggtg gatggaagga chr13:94009997-94010077 41 1.78e-04 cagtgagcca tgtttgtg ccactgcact chr22:22849187-22849267 2 1.89e-04 a ggtgcgtg ccaccacgcc chr8:142565281-142565361 31 2.13e-04 tggtgttgga ggtgtgtc catggtgttg chr3:195511208-195511288 10 2.28e-04 GGCGTGACC TGTGGATG CTGAGGAAGT chr21:11082707-11082787 10 2.45e-04 TTCTTTCCA TGTGAATG CCTCACATTT chr11:45630959-45631039 21 2.45e-04 gattcataga tgtgaatg gtgattagat chr1:226941415-226941495 22 3.41e-04 aagagggcct tgggagtg ctaagttatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:126029175-12602925 1.4e-05 56_[+1]_16 chr17:72565270-72565350 1.4e-05 34_[+1]_38 chr22:23539909-23539989 1.4e-05 41_[+1]_31 chr7:150996958-150997038 1.4e-05 65_[+1]_7 chr1:227937402-227937482 1.4e-05 37_[+1]_35 chr10:82416298-82416378 1.4e-05 27_[+1]_45 chr12:114130412-11413049 1.4e-05 49_[+1]_23 chr14:65640941-65641021 1.4e-05 35_[+1]_37 chr6:14065741-14065821 1.4e-05 50_[+1]_22 chr11:64147311-64147391 1.4e-05 65_[+1]_7 chr19:7907088-7907168 1.4e-05 32_[+1]_40 chr1:226837052-226837132 1.4e-05 45_[+1]_27 chr21:46462062-46462142 1.4e-05 12_[+1]_60 chr4:3716474-3716554 1.4e-05 35_[+1]_37 chr16:86338662-86338742 1.4e-05 13_[+1]_59 chr2:10508336-10508416 1.4e-05 29_[+1]_43 chr2:242890675-242890755 1.4e-05 24_[+1]_48 chr10:14017375-14017455 1.4e-05 22_[+1]_50 chr11:134609487-13460956 1.4e-05 41_[+1]_31 chr4:200032-200112 1.4e-05 37_[+1]_35 chr21:41511789-41511869 1.4e-05 11_[+1]_61 chr1:246902333-246902413 1.4e-05 14_[+1]_58 chr17:63171210-63171290 1.4e-05 33_[+1]_39 chr9:131006153-131006233 1.4e-05 69_[+1]_3 chr2:23644613-23644693 1.4e-05 14_[+1]_58 chr6:41422287-41422367 1.4e-05 53_[+1]_19 chr21:42522616-42522696 1.4e-05 27_[+1]_45 chr10:73192141-73192221 1.4e-05 21_[+1]_51 chr10:72720197-72720277 1.4e-05 37_[+1]_35 chr1:48057602-48057682 1.4e-05 8_[+1]_64 chr1:36352366-36352446 1.4e-05 65_[+1]_7 chr11:44811882-44811962 1.4e-05 17_[+1]_55 chr1:202593306-202593386 1.4e-05 38_[+1]_34 chr11:45000059-45000139 1.4e-05 36_[+1]_36 chr1:7667300-7667380 2.7e-05 46_[+1]_26 chr17:38615382-38615462 2.7e-05 54_[+1]_18 chr1:207097025-207097105 2.7e-05 31_[+1]_41 chr20:29607946-29608026 2.7e-05 30_[+1]_42 chr12:111345972-11134605 4.3e-05 51_[+1]_21 chr21:11173267-11173347 4.3e-05 25_[+1]_47 chr1:54098522-54098602 4.3e-05 17_[+1]_55 chr10:44192089-44192169 4.3e-05 66_[+1]_6 chr22:22407412-22407492 7e-05 29_[+1]_43 chrX:151985316-151985396 8.2e-05 56_[+1]_16 chr8:126626461-126626541 8.2e-05 31_[+1]_41 chr1:120626747-120626827 0.00011 17_[+1]_55 chr21:11070262-11070342 0.00011 59_[+1]_13 chr17:72598494-72598574 0.00011 65_[+1]_7 chr6:31083184-31083264 0.00011 26_[+1]_46 chr5:1046927-1047007 0.00014 37_[+1]_35 chr21:11134949-11135029 0.00015 52_[+1]_20 chr22:19404464-19404544 0.00015 26_[+1]_46 chr4:1499196-1499276 0.00015 31_[+1]_41 chr13:94009997-94010077 0.00018 40_[+1]_32 chr22:22849187-22849267 0.00019 1_[+1]_71 chr8:142565281-142565361 0.00021 30_[+1]_42 chr3:195511208-195511288 0.00023 9_[+1]_63 chr21:11082707-11082787 0.00024 9_[+1]_63 chr11:45630959-45631039 0.00024 20_[+1]_52 chr1:226941415-226941495 0.00034 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=60 chr11:126029175-12602925 ( 57) TGTGTGTG 1 chr17:72565270-72565350 ( 35) TGTGTGTG 1 chr22:23539909-23539989 ( 42) TGTGTGTG 1 chr7:150996958-150997038 ( 66) TGTGTGTG 1 chr1:227937402-227937482 ( 38) TGTGTGTG 1 chr10:82416298-82416378 ( 28) TGTGTGTG 1 chr12:114130412-11413049 ( 50) TGTGTGTG 1 chr14:65640941-65641021 ( 36) TGTGTGTG 1 chr6:14065741-14065821 ( 51) TGTGTGTG 1 chr11:64147311-64147391 ( 66) TGTGTGTG 1 chr19:7907088-7907168 ( 33) TGTGTGTG 1 chr1:226837052-226837132 ( 46) TGTGTGTG 1 chr21:46462062-46462142 ( 13) TGTGTGTG 1 chr4:3716474-3716554 ( 36) TGTGTGTG 1 chr16:86338662-86338742 ( 14) TGTGTGTG 1 chr2:10508336-10508416 ( 30) TGTGTGTG 1 chr2:242890675-242890755 ( 25) TGTGTGTG 1 chr10:14017375-14017455 ( 23) TGTGTGTG 1 chr11:134609487-13460956 ( 42) TGTGTGTG 1 chr4:200032-200112 ( 38) TGTGTGTG 1 chr21:41511789-41511869 ( 12) TGTGTGTG 1 chr1:246902333-246902413 ( 15) TGTGTGTG 1 chr17:63171210-63171290 ( 34) TGTGTGTG 1 chr9:131006153-131006233 ( 70) TGTGTGTG 1 chr2:23644613-23644693 ( 15) TGTGTGTG 1 chr6:41422287-41422367 ( 54) TGTGTGTG 1 chr21:42522616-42522696 ( 28) TGTGTGTG 1 chr10:73192141-73192221 ( 22) TGTGTGTG 1 chr10:72720197-72720277 ( 38) TGTGTGTG 1 chr1:48057602-48057682 ( 9) TGTGTGTG 1 chr1:36352366-36352446 ( 66) TGTGTGTG 1 chr11:44811882-44811962 ( 18) TGTGTGTG 1 chr1:202593306-202593386 ( 39) TGTGTGTG 1 chr11:45000059-45000139 ( 37) TGTGTGTG 1 chr1:7667300-7667380 ( 47) GGTGTGTG 1 chr17:38615382-38615462 ( 55) GGTGTGTG 1 chr1:207097025-207097105 ( 32) GGTGTGTG 1 chr20:29607946-29608026 ( 31) GGTGTGTG 1 chr12:111345972-11134605 ( 52) TGTGTATG 1 chr21:11173267-11173347 ( 26) TGTGTATG 1 chr1:54098522-54098602 ( 18) TGTGTATG 1 chr10:44192089-44192169 ( 67) TGTGTATG 1 chr22:22407412-22407492 ( 30) TGTGAGTG 1 chrX:151985316-151985396 ( 57) TGTGCGTG 1 chr8:126626461-126626541 ( 32) TGTGCGTG 1 chr1:120626747-120626827 ( 18) TGTGTGTC 1 chr21:11070262-11070342 ( 60) TGGGTGTG 1 chr17:72598494-72598574 ( 66) TGTGTGTC 1 chr6:31083184-31083264 ( 27) TGGGTGTG 1 chr5:1046927-1047007 ( 38) AGTGTGTG 1 chr21:11134949-11135029 ( 53) GGTGGGTG 1 chr22:19404464-19404544 ( 27) GGTGGGTG 1 chr4:1499196-1499276 ( 32) GGTGGGTG 1 chr13:94009997-94010077 ( 41) TGTTTGTG 1 chr22:22849187-22849267 ( 2) GGTGCGTG 1 chr8:142565281-142565361 ( 31) GGTGTGTC 1 chr3:195511208-195511288 ( 10) TGTGGATG 1 chr21:11082707-11082787 ( 10) TGTGAATG 1 chr11:45630959-45631039 ( 21) TGTGAATG 1 chr1:226941415-226941495 ( 22) TGGGAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.52138 E= 2.4e-050 -404 -1255 -65 168 -1255 -1255 209 -1255 -1255 -1255 -223 187 -1255 -1255 206 -396 -204 -220 -182 165 -123 -1255 191 -1255 -1255 -1255 -1255 194 -1255 -220 201 -1255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 2.4e-050 0.016667 0.000000 0.150000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.983333 0.016667 0.066667 0.050000 0.066667 0.816667 0.116667 0.000000 0.883333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.050000 0.950000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 4.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACWCA MEME-2 width = 8 sites = 64 llr = 560 E-value = 7.0e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACWCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:727:8 pos.-specific C a:a38:a2 probability G :::::::: matrix T :::::3:: bits 2.1 * * * 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.3 *** * * Entropy 1.1 ******** (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:126307726-12630780 58 1.58e-05 ctatgacata cacacaca ccatgtgctc chr8:102406429-102406509 9 1.58e-05 cattcata cacacaca tacacacacg chr12:132641083-13264116 35 1.58e-05 cacaccacta cacacaca ccactacata chr1:214633852-214633932 17 1.58e-05 AAAATTCCAa cacacaca cacacacaca chr7:158041839-158041919 48 1.58e-05 gaacacacat cacacaca tgcacaccat chr17:55726655-55726735 7 1.58e-05 acacaa cacacaca acacatacat chr19:6229687-6229767 1 1.58e-05 . cacacaca cgccccacac chr1:9120142-9120222 49 1.58e-05 acacacacaa cacacaca ctacatacac chr6:166207963-166208043 56 1.58e-05 cgcacaccct cacacaca ctcattacac chr19:31192265-31192345 70 1.58e-05 cacacaaaca cacacaca gac chr6:138297867-138297947 71 1.58e-05 tgcctcccta cacacaca ga chr8:5930681-5930761 71 1.58e-05 cacacacacg cacacaca aa chr10:88413855-88413935 7 1.58e-05 TTGAAa cacacaca ctcacgaacc chr17:70553689-70553769 33 1.58e-05 ataacgcaga cacacaca acatatacac chr17:77995463-77995543 64 1.58e-05 acaccacaga cacacaca ctgcacaca chr8:676994-677074 15 1.58e-05 accacacagg cacacaca tgcatgcaca chr12:132642648-13264272 62 1.58e-05 acacacacta cacacaca ctatgcacac chr7:2657743-2657823 41 1.58e-05 AACTTGAAAa cacacaca aaaccaacat chr4:6535946-6536026 73 1.58e-05 catatcccaa cacacaca chr21:44083244-44083324 68 1.58e-05 ccacacccac cacacaca tgcac chr15:42447206-42447286 25 1.58e-05 cgtactcagt cacacaca ctggcactca chr22:22285591-22285671 42 1.58e-05 GCAATGAGCG CACACACA CCTGTGGTGC chr6:1403696-1403776 40 1.58e-05 cggacactaa cacacaca ctgacacaga chr1:26095762-26095842 66 1.58e-05 ctacatacac cacacaca ttcattc chr17:7010784-7010864 70 1.58e-05 agagacacac cacacaca tca chr12:131975061-13197514 50 1.58e-05 tacaagtcca cacacaca aactgcactt chr12:76401305-76401385 21 1.58e-05 AGACCGACAT CACACACA TGCCATAAAT chr11:33425049-33425129 26 1.58e-05 gacacgcaga cacacaca cgcacagaca chr21:43581691-43581771 59 1.58e-05 cacacacaaa cacacaca tacagacata chr22:20744985-20745065 15 1.58e-05 TTGAGAGAAC CACACACA CACACAGGTC chr21:39728415-39728495 15 1.58e-05 gagatacaca cacacaca cacacggaca chr21:40384902-40384982 17 1.58e-05 GTACCACATG cacacaca cacatgcaca chr1:10721596-10721676 44 1.58e-05 cattctcaaa cacacaca cccaacacgg chr7:148160504-148160584 3 3.07e-05 tg cacactca tacacgcata chr16:58121452-58121532 44 3.07e-05 Aacacacatt cacactca aacacgtaca chr22:20109353-20109433 63 3.07e-05 cgtgcatcac cacactca gatgattttt chr7:156291643-156291723 13 4.40e-05 aacacagata cacccaca gacaaataca chr16:23327987-23328067 51 6.98e-05 tcaccaccat caccctca ccatctcctc chr16:87256101-87256181 10 6.98e-05 cattatcat caccctca ccatcatcac chr1:53565600-53565680 10 6.98e-05 CTGTACATT CACACACC ACACCACCTC chr22:19113951-19114031 39 1.01e-04 ATGGCCCAGC CACACTCC AGCCTGAGCA chr22:23338763-23338843 17 1.01e-04 ccagtgcctg cacactcc actccactgt chr16:1083727-1083807 8 1.12e-04 atccatc cacccacc tatccatcca chr12:132053026-13205310 31 1.12e-04 cccatacatc cacccacc cactcatcca chr22:21430751-21430831 23 1.12e-04 tcaagtgatc cacccacc ttagcctccc chr12:108783437-10878351 19 1.30e-04 ccattaccac cacaatca ctatcactac chr20:26054830-26054910 56 1.30e-04 tcatcaccat cacaatca ccaccatcac chr22:19919015-19919095 72 1.30e-04 ggcacagtgg cacaatca c chr5:2439782-2439862 15 1.30e-04 tcaacaccat cacaatca tcatcattat chr22:20769963-20770043 45 1.46e-04 tttacactcc caccaaca gtgtaaaagc chr22:22280732-22280812 15 1.56e-04 cctcatgatc caccctcc tcggcttccc chr8:91484662-91484742 13 1.56e-04 TTTTCTCATC CACcctcc ctcccttcct chr4:7192092-7192172 45 1.56e-04 cttccccttc caccctcc catccttcct chr3:13693636-13693716 69 1.56e-04 cccttcctag caccctcc aaga chr1:228702650-228702730 32 1.71e-04 gacaggaggt cacacact gcacaattcc chr12:133040366-13304044 3 2.02e-04 ac caccatca ccatcaccat chr4:5672176-5672256 48 2.02e-04 tcaccatcac caccatca ccatcgccac chr6:166162847-166162927 10 2.02e-04 caccatcat caccatca ccaccaccat chr16:9495148-9495228 4 2.02e-04 cat caccatca tcaccttcat chr8:142890038-142890118 62 2.02e-04 ccatcatcac caccatca ttactatcat chr1:7628870-7628950 60 2.02e-04 tcatcaacat caccatca tcaccgcatc chr11:34544561-34544641 62 2.16e-04 CTACATCCAC CACACTCT CCCCACAGAC chr21:43056257-43056337 33 2.29e-04 tccattcatc cacccact ccatccatcc chr5:517258-517338 65 2.57e-04 ctcatccatc caccaacc attcacgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:126307726-12630780 1.6e-05 57_[+2]_15 chr8:102406429-102406509 1.6e-05 8_[+2]_64 chr12:132641083-13264116 1.6e-05 34_[+2]_38 chr1:214633852-214633932 1.6e-05 16_[+2]_56 chr7:158041839-158041919 1.6e-05 47_[+2]_25 chr17:55726655-55726735 1.6e-05 6_[+2]_66 chr19:6229687-6229767 1.6e-05 [+2]_72 chr1:9120142-9120222 1.6e-05 48_[+2]_24 chr6:166207963-166208043 1.6e-05 55_[+2]_17 chr19:31192265-31192345 1.6e-05 69_[+2]_3 chr6:138297867-138297947 1.6e-05 70_[+2]_2 chr8:5930681-5930761 1.6e-05 70_[+2]_2 chr10:88413855-88413935 1.6e-05 6_[+2]_66 chr17:70553689-70553769 1.6e-05 32_[+2]_40 chr17:77995463-77995543 1.6e-05 63_[+2]_9 chr8:676994-677074 1.6e-05 14_[+2]_58 chr12:132642648-13264272 1.6e-05 61_[+2]_11 chr7:2657743-2657823 1.6e-05 40_[+2]_32 chr4:6535946-6536026 1.6e-05 72_[+2] chr21:44083244-44083324 1.6e-05 67_[+2]_5 chr15:42447206-42447286 1.6e-05 24_[+2]_48 chr22:22285591-22285671 1.6e-05 41_[+2]_31 chr6:1403696-1403776 1.6e-05 39_[+2]_33 chr1:26095762-26095842 1.6e-05 65_[+2]_7 chr17:7010784-7010864 1.6e-05 69_[+2]_3 chr12:131975061-13197514 1.6e-05 49_[+2]_23 chr12:76401305-76401385 1.6e-05 20_[+2]_52 chr11:33425049-33425129 1.6e-05 25_[+2]_47 chr21:43581691-43581771 1.6e-05 58_[+2]_14 chr22:20744985-20745065 1.6e-05 14_[+2]_58 chr21:39728415-39728495 1.6e-05 14_[+2]_58 chr21:40384902-40384982 1.6e-05 16_[+2]_56 chr1:10721596-10721676 1.6e-05 43_[+2]_29 chr7:148160504-148160584 3.1e-05 2_[+2]_70 chr16:58121452-58121532 3.1e-05 43_[+2]_29 chr22:20109353-20109433 3.1e-05 62_[+2]_10 chr7:156291643-156291723 4.4e-05 12_[+2]_60 chr16:23327987-23328067 7e-05 50_[+2]_22 chr16:87256101-87256181 7e-05 9_[+2]_63 chr1:53565600-53565680 7e-05 9_[+2]_63 chr22:19113951-19114031 0.0001 38_[+2]_34 chr22:23338763-23338843 0.0001 16_[+2]_56 chr16:1083727-1083807 0.00011 7_[+2]_65 chr12:132053026-13205310 0.00011 30_[+2]_42 chr22:21430751-21430831 0.00011 22_[+2]_50 chr12:108783437-10878351 0.00013 18_[+2]_54 chr20:26054830-26054910 0.00013 55_[+2]_17 chr22:19919015-19919095 0.00013 71_[+2]_1 chr5:2439782-2439862 0.00013 14_[+2]_58 chr22:20769963-20770043 0.00015 44_[+2]_28 chr22:22280732-22280812 0.00016 14_[+2]_58 chr8:91484662-91484742 0.00016 12_[+2]_60 chr4:7192092-7192172 0.00016 44_[+2]_28 chr3:13693636-13693716 0.00016 68_[+2]_4 chr1:228702650-228702730 0.00017 31_[+2]_41 chr12:133040366-13304044 0.0002 2_[+2]_70 chr4:5672176-5672256 0.0002 47_[+2]_25 chr6:166162847-166162927 0.0002 9_[+2]_63 chr16:9495148-9495228 0.0002 3_[+2]_69 chr8:142890038-142890118 0.0002 61_[+2]_11 chr1:7628870-7628950 0.0002 59_[+2]_13 chr11:34544561-34544641 0.00022 61_[+2]_11 chr21:43056257-43056337 0.00023 32_[+2]_40 chr5:517258-517338 0.00026 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACWCA width=8 seqs=64 chr11:126307726-12630780 ( 58) CACACACA 1 chr8:102406429-102406509 ( 9) CACACACA 1 chr12:132641083-13264116 ( 35) CACACACA 1 chr1:214633852-214633932 ( 17) CACACACA 1 chr7:158041839-158041919 ( 48) CACACACA 1 chr17:55726655-55726735 ( 7) CACACACA 1 chr19:6229687-6229767 ( 1) CACACACA 1 chr1:9120142-9120222 ( 49) CACACACA 1 chr6:166207963-166208043 ( 56) CACACACA 1 chr19:31192265-31192345 ( 70) CACACACA 1 chr6:138297867-138297947 ( 71) CACACACA 1 chr8:5930681-5930761 ( 71) CACACACA 1 chr10:88413855-88413935 ( 7) CACACACA 1 chr17:70553689-70553769 ( 33) CACACACA 1 chr17:77995463-77995543 ( 64) CACACACA 1 chr8:676994-677074 ( 15) CACACACA 1 chr12:132642648-13264272 ( 62) CACACACA 1 chr7:2657743-2657823 ( 41) CACACACA 1 chr4:6535946-6536026 ( 73) CACACACA 1 chr21:44083244-44083324 ( 68) CACACACA 1 chr15:42447206-42447286 ( 25) CACACACA 1 chr22:22285591-22285671 ( 42) CACACACA 1 chr6:1403696-1403776 ( 40) CACACACA 1 chr1:26095762-26095842 ( 66) CACACACA 1 chr17:7010784-7010864 ( 70) CACACACA 1 chr12:131975061-13197514 ( 50) CACACACA 1 chr12:76401305-76401385 ( 21) CACACACA 1 chr11:33425049-33425129 ( 26) CACACACA 1 chr21:43581691-43581771 ( 59) CACACACA 1 chr22:20744985-20745065 ( 15) CACACACA 1 chr21:39728415-39728495 ( 15) CACACACA 1 chr21:40384902-40384982 ( 17) CACACACA 1 chr1:10721596-10721676 ( 44) CACACACA 1 chr7:148160504-148160584 ( 3) CACACTCA 1 chr16:58121452-58121532 ( 44) CACACTCA 1 chr22:20109353-20109433 ( 63) CACACTCA 1 chr7:156291643-156291723 ( 13) CACCCACA 1 chr16:23327987-23328067 ( 51) CACCCTCA 1 chr16:87256101-87256181 ( 10) CACCCTCA 1 chr1:53565600-53565680 ( 10) CACACACC 1 chr22:19113951-19114031 ( 39) CACACTCC 1 chr22:23338763-23338843 ( 17) CACACTCC 1 chr16:1083727-1083807 ( 8) CACCCACC 1 chr12:132053026-13205310 ( 31) CACCCACC 1 chr22:21430751-21430831 ( 23) CACCCACC 1 chr12:108783437-10878351 ( 19) CACAATCA 1 chr20:26054830-26054910 ( 56) CACAATCA 1 chr22:19919015-19919095 ( 72) CACAATCA 1 chr5:2439782-2439862 ( 15) CACAATCA 1 chr22:20769963-20770043 ( 45) CACCAACA 1 chr22:22280732-22280812 ( 15) CACCCTCC 1 chr8:91484662-91484742 ( 13) CACCCTCC 1 chr4:7192092-7192172 ( 45) CACCCTCC 1 chr3:13693636-13693716 ( 69) CACCCTCC 1 chr1:228702650-228702730 ( 32) CACACACT 1 chr12:133040366-13304044 ( 3) CACCATCA 1 chr4:5672176-5672256 ( 48) CACCATCA 1 chr6:166162847-166162927 ( 10) CACCATCA 1 chr16:9495148-9495228 ( 4) CACCATCA 1 chr8:142890038-142890118 ( 62) CACCATCA 1 chr1:7628870-7628950 ( 60) CACCATCA 1 chr11:34544561-34544641 ( 62) CACACTCT 1 chr21:43056257-43056337 ( 33) CACCCACT 1 chr5:517258-517338 ( 65) CACCAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 7.0e-045 -1264 212 -1264 -1264 187 -1264 -1264 -1264 -1264 212 -1264 -1264 136 37 -1264 -1264 -55 182 -1264 -1264 126 -1264 -1264 40 -1264 212 -1264 -1264 151 -42 -1264 -247 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 7.0e-045 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.703125 0.296875 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 0.656250 0.000000 0.000000 0.343750 0.000000 1.000000 0.000000 0.000000 0.781250 0.171875 0.000000 0.046875 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACWCA MEME-2 regular expression -------------------------------------------------------------------------------- CAC[AC]C[AT]CA -------------------------------------------------------------------------------- Time 8.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TGWGTGTG MEME-3 width = 8 sites = 58 llr = 485 E-value = 7.8e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGWGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::31:::: pos.-specific C :::1:1:: probability G 1a:639:a matrix T 9:737:a: bits 2.1 * * 1.9 * ** 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 *** **** (12.1 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus ATG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:72565270-72565350 14 1.39e-05 gtgtgggtgg tgtgtgtg tacatgtggt chr1:227937402-227937482 50 1.39e-05 tgtgtgtgtc tgtgtgtg tctgtgtgtc chr10:82416298-82416378 38 1.39e-05 tgtgtgtgtc tgtgtgtg tctgtgtctg chr14:65640941-65641021 26 1.39e-05 gtgtgtgaat tgtgtgtg attgtgtgtg chr19:7907088-7907168 9 1.39e-05 catgtata tgtgtgtg tgtgaatatg chr21:46462062-46462142 47 1.39e-05 atgtgtgtaa tgtgtgtg gtttatacgt chr4:3716474-3716554 18 1.39e-05 gatgtgtgga tgtgtgtg tctctgtgtg chr2:10508336-10508416 59 1.39e-05 ggtttgtgca tgtgtgtg catacgtgtg chr2:242890675-242890755 71 1.39e-05 tgcatgtgtc tgtgtgtg at chr11:134609487-13460956 10 1.39e-05 tgtgtgtag tgtgtgtg gtgtgttgtg chr4:200032-200112 72 1.39e-05 tgggtatgag tgtgtgtg t chr21:41511789-41511869 43 1.39e-05 tgaggtgtgg tgtgtgtg gtgagtgtgg chr1:246902333-246902413 63 1.39e-05 catgaatggg tgtgtgtg gtgtgtgttt chr17:63171210-63171290 2 1.39e-05 g tgtgtgtg tgtcaggaca chr2:23644613-23644693 53 1.39e-05 catacatctg tgtgtgtg tccatttgtc chr21:42522616-42522696 46 1.39e-05 cggtatgcaa tgtgtgtg tctgagtatg chr10:73192141-73192221 62 1.39e-05 tttgagagcg tgtgtgtg agagcatgtg chr10:72720197-72720277 25 1.39e-05 agtgtgagaa tgtgtgtg agaattgtgt chr1:48057602-48057682 20 1.39e-05 gtgtgtgtag tgtgtgtg tctatgagat chr11:44811882-44811962 48 1.39e-05 tttgtgtgcg tgtgtgtg catgtgctct chr1:202593306-202593386 59 1.39e-05 gtatgtgtag tgtgtgtg ATGTGGGCGC chr11:45000059-45000139 65 1.39e-05 tgtatgtgag tgtgtgtg agagtgtg chr1:120626747-120626827 73 2.65e-05 aaacattatt tgtgggtg chr16:86338662-86338742 52 2.65e-05 catgtgcata tgtgggtg tgtgtatatg chr9:131006153-131006233 41 2.65e-05 AGCTGTGGGC TGTGGGTG CTGGGAGGCG chr7:150996958-150997038 36 4.12e-05 tgtcaatgtg tgagtgtg tctgcatatg chr11:64147311-64147391 18 4.12e-05 CATATAAGTG TGAGTGTG AACAAAGCCT chr1:226837052-226837132 71 4.12e-05 gatatgtgca tgagtgtg tg chr1:54098522-54098602 72 4.12e-05 gaggtgtgaa tgagtgtg a chr19:7107243-7107323 5 6.99e-05 atga tgagggtg atgatggtaa chr5:10670364-10670444 41 6.99e-05 atgatggtga tgagggtg atgataatgg chr20:58262175-58262255 38 1.00e-04 atgacgatgg tgattgtg atggtggtgg chr6:14065741-14065821 71 1.14e-04 tgtgtatctc tgtctgtg tg chr10:14017375-14017455 43 1.14e-04 tgtgcatatg tgtctgtg cgtatgtgtg chr6:41422287-41422367 41 1.14e-04 ATGAGgtgtg tgtctgtg agccgtgtgt chr12:129123769-12912384 13 1.28e-04 atggtgatga tgatggtg ataatgatga chr12:126162572-12616265 30 1.28e-04 atgatgacgg tgatggtg tgatgatgat chr16:83030550-83030630 37 1.28e-04 atgatgatgg tgatggtg gtgatgatga chr12:124577815-12457789 32 1.28e-04 gtgatgatgg tgatggtg tgatgatgat chr16:87243432-87243512 43 1.28e-04 gtgatgatgg tgatggtg atgacggtgg chr8:144031450-144031530 23 1.28e-04 atggtgttga tgatggtg gtgatggtgg chr1:4429234-4429314 16 1.28e-04 atggtggtga tgatggtg ctgtggtgaa chr8:10890807-10890887 29 1.28e-04 atgacgatag tgatggtg atggtggtgg chr11:69872084-69872164 30 1.28e-04 atgatgatga tgatggtg gtggtgatgg chr19:6955279-6955359 34 1.28e-04 aaggtcatgg tgatggtg gtgatagtga chr10:1265885-1265965 26 1.28e-04 tggtgatgga tgatggtg atggtggtga chr12:114130412-11413049 34 1.41e-04 GTTAGTGGTT Ggtgtgtg aatgagtgtg chr1:207097025-207097105 45 1.41e-04 gtgtgtctga ggtgtgtg taagggtgca chr17:72598494-72598574 44 1.57e-04 tgtgcataga tgtatgtg tacgaatggg chr8:126626461-126626541 53 1.57e-04 GAGAGTTGAg tgtatgtg gtgtatgtgc chr10:44192089-44192169 35 1.57e-04 aatgtgtatt tgtatgtg agaaggtgag chr3:195511208-195511288 27 1.70e-04 GCTGAGGAAG TGTCGGTG ACAGGAAGAG chr22:23539423-23539503 55 2.68e-04 ctgtcgtgta ggtttgtg taggtacact chr22:22890366-22890446 35 2.93e-04 TGTCTGAAAC TGTGGCTG CTTTGTTGCT chr22:21963649-21963729 62 3.08e-04 taagaagaaa tgagTctg ggtgcagtgg chr22:17124166-17124246 60 3.35e-04 tatcagaagt tgtttctg catctattca chr11:126029175-12602925 35 4.07e-04 tgactgcatg tgtgtatg gtgtcttgta chr7:482920-483000 46 4.62e-04 atagatggat ggatggtg gatgaatgga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:72565270-72565350 1.4e-05 13_[+3]_59 chr1:227937402-227937482 1.4e-05 49_[+3]_23 chr10:82416298-82416378 1.4e-05 37_[+3]_35 chr14:65640941-65641021 1.4e-05 25_[+3]_47 chr19:7907088-7907168 1.4e-05 8_[+3]_64 chr21:46462062-46462142 1.4e-05 46_[+3]_26 chr4:3716474-3716554 1.4e-05 17_[+3]_55 chr2:10508336-10508416 1.4e-05 58_[+3]_14 chr2:242890675-242890755 1.4e-05 70_[+3]_2 chr11:134609487-13460956 1.4e-05 9_[+3]_63 chr4:200032-200112 1.4e-05 71_[+3]_1 chr21:41511789-41511869 1.4e-05 42_[+3]_30 chr1:246902333-246902413 1.4e-05 62_[+3]_10 chr17:63171210-63171290 1.4e-05 1_[+3]_71 chr2:23644613-23644693 1.4e-05 52_[+3]_20 chr21:42522616-42522696 1.4e-05 45_[+3]_27 chr10:73192141-73192221 1.4e-05 61_[+3]_11 chr10:72720197-72720277 1.4e-05 24_[+3]_48 chr1:48057602-48057682 1.4e-05 19_[+3]_53 chr11:44811882-44811962 1.4e-05 47_[+3]_25 chr1:202593306-202593386 1.4e-05 58_[+3]_14 chr11:45000059-45000139 1.4e-05 64_[+3]_8 chr1:120626747-120626827 2.7e-05 72_[+3] chr16:86338662-86338742 2.7e-05 51_[+3]_21 chr9:131006153-131006233 2.7e-05 40_[+3]_32 chr7:150996958-150997038 4.1e-05 35_[+3]_37 chr11:64147311-64147391 4.1e-05 17_[+3]_55 chr1:226837052-226837132 4.1e-05 70_[+3]_2 chr1:54098522-54098602 4.1e-05 71_[+3]_1 chr19:7107243-7107323 7e-05 4_[+3]_68 chr5:10670364-10670444 7e-05 40_[+3]_32 chr20:58262175-58262255 0.0001 37_[+3]_35 chr6:14065741-14065821 0.00011 70_[+3]_2 chr10:14017375-14017455 0.00011 42_[+3]_30 chr6:41422287-41422367 0.00011 40_[+3]_32 chr12:129123769-12912384 0.00013 12_[+3]_60 chr12:126162572-12616265 0.00013 29_[+3]_43 chr16:83030550-83030630 0.00013 36_[+3]_36 chr12:124577815-12457789 0.00013 31_[+3]_41 chr16:87243432-87243512 0.00013 42_[+3]_30 chr8:144031450-144031530 0.00013 22_[+3]_50 chr1:4429234-4429314 0.00013 15_[+3]_57 chr8:10890807-10890887 0.00013 28_[+3]_44 chr11:69872084-69872164 0.00013 29_[+3]_43 chr19:6955279-6955359 0.00013 33_[+3]_39 chr10:1265885-1265965 0.00013 25_[+3]_47 chr12:114130412-11413049 0.00014 33_[+3]_39 chr1:207097025-207097105 0.00014 44_[+3]_28 chr17:72598494-72598574 0.00016 43_[+3]_29 chr8:126626461-126626541 0.00016 52_[+3]_20 chr10:44192089-44192169 0.00016 34_[+3]_38 chr3:195511208-195511288 0.00017 26_[+3]_46 chr22:23539423-23539503 0.00027 54_[+3]_18 chr22:22890366-22890446 0.00029 34_[+3]_38 chr22:21963649-21963729 0.00031 61_[+3]_11 chr22:17124166-17124246 0.00033 59_[+3]_13 chr11:126029175-12602925 0.00041 34_[+3]_38 chr7:482920-483000 0.00046 45_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGWGTGTG width=8 seqs=58 chr17:72565270-72565350 ( 14) TGTGTGTG 1 chr1:227937402-227937482 ( 50) TGTGTGTG 1 chr10:82416298-82416378 ( 38) TGTGTGTG 1 chr14:65640941-65641021 ( 26) TGTGTGTG 1 chr19:7907088-7907168 ( 9) TGTGTGTG 1 chr21:46462062-46462142 ( 47) TGTGTGTG 1 chr4:3716474-3716554 ( 18) TGTGTGTG 1 chr2:10508336-10508416 ( 59) TGTGTGTG 1 chr2:242890675-242890755 ( 71) TGTGTGTG 1 chr11:134609487-13460956 ( 10) TGTGTGTG 1 chr4:200032-200112 ( 72) TGTGTGTG 1 chr21:41511789-41511869 ( 43) TGTGTGTG 1 chr1:246902333-246902413 ( 63) TGTGTGTG 1 chr17:63171210-63171290 ( 2) TGTGTGTG 1 chr2:23644613-23644693 ( 53) TGTGTGTG 1 chr21:42522616-42522696 ( 46) TGTGTGTG 1 chr10:73192141-73192221 ( 62) TGTGTGTG 1 chr10:72720197-72720277 ( 25) TGTGTGTG 1 chr1:48057602-48057682 ( 20) TGTGTGTG 1 chr11:44811882-44811962 ( 48) TGTGTGTG 1 chr1:202593306-202593386 ( 59) TGTGTGTG 1 chr11:45000059-45000139 ( 65) TGTGTGTG 1 chr1:120626747-120626827 ( 73) TGTGGGTG 1 chr16:86338662-86338742 ( 52) TGTGGGTG 1 chr9:131006153-131006233 ( 41) TGTGGGTG 1 chr7:150996958-150997038 ( 36) TGAGTGTG 1 chr11:64147311-64147391 ( 18) TGAGTGTG 1 chr1:226837052-226837132 ( 71) TGAGTGTG 1 chr1:54098522-54098602 ( 72) TGAGTGTG 1 chr19:7107243-7107323 ( 5) TGAGGGTG 1 chr5:10670364-10670444 ( 41) TGAGGGTG 1 chr20:58262175-58262255 ( 38) TGATTGTG 1 chr6:14065741-14065821 ( 71) TGTCTGTG 1 chr10:14017375-14017455 ( 43) TGTCTGTG 1 chr6:41422287-41422367 ( 41) TGTCTGTG 1 chr12:129123769-12912384 ( 13) TGATGGTG 1 chr12:126162572-12616265 ( 30) TGATGGTG 1 chr16:83030550-83030630 ( 37) TGATGGTG 1 chr12:124577815-12457789 ( 32) TGATGGTG 1 chr16:87243432-87243512 ( 43) TGATGGTG 1 chr8:144031450-144031530 ( 23) TGATGGTG 1 chr1:4429234-4429314 ( 16) TGATGGTG 1 chr8:10890807-10890887 ( 29) TGATGGTG 1 chr11:69872084-69872164 ( 30) TGATGGTG 1 chr19:6955279-6955359 ( 34) TGATGGTG 1 chr10:1265885-1265965 ( 26) TGATGGTG 1 chr12:114130412-11413049 ( 34) GGTGTGTG 1 chr1:207097025-207097105 ( 45) GGTGTGTG 1 chr17:72598494-72598574 ( 44) TGTATGTG 1 chr8:126626461-126626541 ( 53) TGTATGTG 1 chr10:44192089-44192169 ( 35) TGTATGTG 1 chr3:195511208-195511288 ( 27) TGTCGGTG 1 chr22:23539423-23539503 ( 55) GGTTTGTG 1 chr22:22890366-22890446 ( 35) TGTGGCTG 1 chr22:21963649-21963729 ( 62) TGAGTCTG 1 chr22:17124166-17124246 ( 60) TGTTTCTG 1 chr11:126029175-12602925 ( 35) TGTGTATG 1 chr7:482920-483000 ( 46) GGATGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.54487 E= 7.8e-027 -1250 -1250 -177 184 -1250 -1250 209 -1250 33 -1250 -1250 133 -241 -174 140 -1 -1250 -1250 48 137 -399 -215 198 -1250 -1250 -1250 -1250 194 -1250 -1250 209 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 7.8e-027 0.000000 0.000000 0.068966 0.931034 0.000000 0.000000 1.000000 0.000000 0.344828 0.000000 0.000000 0.655172 0.051724 0.068966 0.620690 0.258621 0.000000 0.000000 0.327586 0.672414 0.017241 0.051724 0.931034 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- TG[TA][GT][TG]GTG -------------------------------------------------------------------------------- Time 12.11 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-4 width = 8 sites = 41 llr = 379 E-value = 5.2e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9:9:a:a: pos.-specific C :9:a:a:8 probability G :::::::: matrix T :1:::::2 bits 2.1 * 1.9 **** 1.7 **** 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:126307726-12630780 41 1.58e-05 ACTTACAGGT acacacac tatgacatac chr8:102406429-102406509 18 1.58e-05 acacacacat acacacac gtacacacac chr12:132641083-13264116 60 1.58e-05 atacaccact acacacac cactacacac chr1:214633852-214633932 32 1.58e-05 acacacacac acacacac acacacaGAT chr7:158041839-158041919 30 1.58e-05 tgcacacagc acacacac gaacacacat chr1:9120142-9120222 70 1.58e-05 catacacact acacacac tac chr6:166207963-166208043 10 1.58e-05 acactcatt acacacac tacacactca chr19:31192265-31192345 41 1.58e-05 acacacccaa acacacac agacacaaaa chr8:5930681-5930761 48 1.58e-05 acacaaacat acacacac agatgcacac chr10:88413855-88413935 40 1.58e-05 acacacacac acacacac gcacacaTTC chr17:77995463-77995543 43 1.58e-05 CATcacagac acacacac cacacaccac chr12:132642648-13264272 3 1.58e-05 ct acacacac cactacacat chr4:6535946-6536026 56 1.58e-05 acatagcaag acacacac atatcccaac chr21:44083244-44083324 30 1.58e-05 catatacatc acacacac atcacacaca chr15:42447206-42447286 6 1.58e-05 tatat acacacac tcgtactcag chr6:1403696-1403776 5 1.58e-05 ccac acacacac tcacagaggt chr1:26095762-26095842 2 1.58e-05 t acacacac atccacacac chr17:7010784-7010864 42 1.58e-05 GATCCATcac acacacac aaacacacca chr21:43581691-43581771 48 1.58e-05 agaaacacac acacacac aaacacacac chr21:40384902-40384982 52 1.58e-05 gctcacattc acacacac cacatgcaca chr1:10721596-10721676 23 1.58e-05 ATcacataca acacacac atgcattctc chr7:148160504-148160584 28 3.36e-05 atacacatgt acacacat gcacacatac chr17:55726655-55726735 73 3.36e-05 acaacacata acacacaT chr16:58121452-58121532 35 3.36e-05 ACTCACCCTA acacacat tcacactcaa chr17:70553689-70553769 17 3.36e-05 cacaacacag acacacat aacgcagaca chr8:676994-677074 30 3.36e-05 acatgcatgc acacacat acaccactca chr11:33425049-33425129 3 3.36e-05 ag acacacat ggacagacac chr7:156291643-156291723 34 3.36e-05 aaatacacag acacacat aggtgcacag chr22:23118008-23118088 20 5.14e-05 agtggtggga atacacac gtgcgccacc chr12:131975061-13197514 27 5.14e-05 acatatatgc atacacac ctacttacaa chr21:39728415-39728495 66 5.14e-05 atacacagag atacacac agaaaca chr19:6229687-6229767 58 6.47e-05 gccacacatg ccacacac TGTACATGCC chr1:53565600-53565680 52 7.96e-05 ATCTCAGTAC ACTCACAC ACTCCATCTG chr22:22890366-22890446 9 7.96e-05 TTTTCCTC ACTCACAC TGAACATTTG chr11:34544561-34544641 41 9.58e-05 CCTAGCACCT AGACACAC CCCCTACATC chr22:22505844-22505924 58 9.58e-05 CAGAAACTTA AGACACAC CTAAATCAAA chr12:76401305-76401385 68 1.14e-04 catacacatc acatacac atata chr6:42167911-42167991 50 1.40e-04 tcctttgttt acccacac ttgctcccta chr7:2657743-2657823 59 1.40e-04 aaaccaacat gcacacac caatgcatgc chr21:43114207-43114287 7 1.75e-04 atccat ccacacat ccatccatcc chr22:23434903-23434983 36 2.31e-04 GCCAGGGAGC ACATACAT CCCAAAGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:126307726-12630780 1.6e-05 40_[+4]_32 chr8:102406429-102406509 1.6e-05 17_[+4]_55 chr12:132641083-13264116 1.6e-05 59_[+4]_13 chr1:214633852-214633932 1.6e-05 31_[+4]_41 chr7:158041839-158041919 1.6e-05 29_[+4]_43 chr1:9120142-9120222 1.6e-05 69_[+4]_3 chr6:166207963-166208043 1.6e-05 9_[+4]_63 chr19:31192265-31192345 1.6e-05 40_[+4]_32 chr8:5930681-5930761 1.6e-05 47_[+4]_25 chr10:88413855-88413935 1.6e-05 39_[+4]_33 chr17:77995463-77995543 1.6e-05 42_[+4]_30 chr12:132642648-13264272 1.6e-05 2_[+4]_70 chr4:6535946-6536026 1.6e-05 55_[+4]_17 chr21:44083244-44083324 1.6e-05 29_[+4]_43 chr15:42447206-42447286 1.6e-05 5_[+4]_67 chr6:1403696-1403776 1.6e-05 4_[+4]_68 chr1:26095762-26095842 1.6e-05 1_[+4]_71 chr17:7010784-7010864 1.6e-05 41_[+4]_31 chr21:43581691-43581771 1.6e-05 47_[+4]_25 chr21:40384902-40384982 1.6e-05 51_[+4]_21 chr1:10721596-10721676 1.6e-05 22_[+4]_50 chr7:148160504-148160584 3.4e-05 27_[+4]_45 chr17:55726655-55726735 3.4e-05 72_[+4] chr16:58121452-58121532 3.4e-05 34_[+4]_38 chr17:70553689-70553769 3.4e-05 16_[+4]_56 chr8:676994-677074 3.4e-05 29_[+4]_43 chr11:33425049-33425129 3.4e-05 2_[+4]_70 chr7:156291643-156291723 3.4e-05 33_[+4]_39 chr22:23118008-23118088 5.1e-05 19_[+4]_53 chr12:131975061-13197514 5.1e-05 26_[+4]_46 chr21:39728415-39728495 5.1e-05 65_[+4]_7 chr19:6229687-6229767 6.5e-05 57_[+4]_15 chr1:53565600-53565680 8e-05 51_[+4]_21 chr22:22890366-22890446 8e-05 8_[+4]_64 chr11:34544561-34544641 9.6e-05 40_[+4]_32 chr22:22505844-22505924 9.6e-05 57_[+4]_15 chr12:76401305-76401385 0.00011 67_[+4]_5 chr6:42167911-42167991 0.00014 49_[+4]_23 chr7:2657743-2657823 0.00014 58_[+4]_14 chr21:43114207-43114287 0.00018 6_[+4]_66 chr22:23434903-23434983 0.00023 35_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=41 chr11:126307726-12630780 ( 41) ACACACAC 1 chr8:102406429-102406509 ( 18) ACACACAC 1 chr12:132641083-13264116 ( 60) ACACACAC 1 chr1:214633852-214633932 ( 32) ACACACAC 1 chr7:158041839-158041919 ( 30) ACACACAC 1 chr1:9120142-9120222 ( 70) ACACACAC 1 chr6:166207963-166208043 ( 10) ACACACAC 1 chr19:31192265-31192345 ( 41) ACACACAC 1 chr8:5930681-5930761 ( 48) ACACACAC 1 chr10:88413855-88413935 ( 40) ACACACAC 1 chr17:77995463-77995543 ( 43) ACACACAC 1 chr12:132642648-13264272 ( 3) ACACACAC 1 chr4:6535946-6536026 ( 56) ACACACAC 1 chr21:44083244-44083324 ( 30) ACACACAC 1 chr15:42447206-42447286 ( 6) ACACACAC 1 chr6:1403696-1403776 ( 5) ACACACAC 1 chr1:26095762-26095842 ( 2) ACACACAC 1 chr17:7010784-7010864 ( 42) ACACACAC 1 chr21:43581691-43581771 ( 48) ACACACAC 1 chr21:40384902-40384982 ( 52) ACACACAC 1 chr1:10721596-10721676 ( 23) ACACACAC 1 chr7:148160504-148160584 ( 28) ACACACAT 1 chr17:55726655-55726735 ( 73) ACACACAT 1 chr16:58121452-58121532 ( 35) ACACACAT 1 chr17:70553689-70553769 ( 17) ACACACAT 1 chr8:676994-677074 ( 30) ACACACAT 1 chr11:33425049-33425129 ( 3) ACACACAT 1 chr7:156291643-156291723 ( 34) ACACACAT 1 chr22:23118008-23118088 ( 20) ATACACAC 1 chr12:131975061-13197514 ( 27) ATACACAC 1 chr21:39728415-39728495 ( 66) ATACACAC 1 chr19:6229687-6229767 ( 58) CCACACAC 1 chr1:53565600-53565680 ( 52) ACTCACAC 1 chr22:22890366-22890446 ( 9) ACTCACAC 1 chr11:34544561-34544641 ( 41) AGACACAC 1 chr22:22505844-22505924 ( 58) AGACACAC 1 chr12:76401305-76401385 ( 68) ACATACAC 1 chr6:42167911-42167991 ( 50) ACCCACAC 1 chr7:2657743-2657823 ( 59) GCACACAC 1 chr21:43114207-43114287 ( 7) CCACACAT 1 chr22:23434903-23434983 ( 36) ACATACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 5.2e-025 176 -224 -327 -1200 -1200 193 -227 -183 176 -324 -1200 -241 -1200 205 -1200 -241 187 -1200 -1200 -1200 -1200 212 -1200 -1200 187 -1200 -1200 -1200 -1200 176 -1200 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 5.2e-025 0.926829 0.048780 0.024390 0.000000 0.000000 0.878049 0.048780 0.073171 0.926829 0.024390 0.000000 0.048780 0.000000 0.951220 0.000000 0.048780 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.780488 0.000000 0.219512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 regular expression -------------------------------------------------------------------------------- ACACACA[CT] -------------------------------------------------------------------------------- Time 15.56 secs. ******************************************************************************** ******************************************************************************** MOTIF MCATACAC MEME-5 width = 8 sites = 45 llr = 371 E-value = 4.3e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCATACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6:a:6:a: pos.-specific C 4a:22a:a probability G :::21::: matrix T :::61::: bits 2.1 * * 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 *** *** (11.9 bits) 0.8 *** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACATACAC consensus C GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:148160504-148160584 48 1.78e-05 acacatacaa acatacac atacacactc chr8:102406429-102406509 70 1.78e-05 atacacactc acatacac aca chr12:132641083-13264116 48 1.78e-05 acacaccact acatacac cactacacac chr17:55726655-55726735 21 1.78e-05 cacaacacat acatacac tcaacacaca chr1:9120142-9120222 59 1.78e-05 cacacacact acatacac actacacaca chr8:5930681-5930761 8 1.78e-05 cacacaa acatacac acacaaatgc chr8:676994-677074 73 1.78e-05 acacacgtac acatacac chr4:6535946-6536026 22 1.78e-05 acaccaacac acatacac acacagtaag chr15:42447206-42447286 62 1.78e-05 atacagacac acatacac aacacgcaca chr1:26095762-26095842 58 1.78e-05 ccatacacct acatacac cacacacatt chr21:39728415-39728495 54 1.78e-05 ggccacaaac acatacac agagatacac chr11:126307726-12630780 11 3.28e-05 cacacattcg ccatacac acCATCATGT chr12:76401305-76401385 57 3.28e-05 cacacagaca ccatacac atcacataca chr11:34544561-34544641 54 4.78e-05 CACACCCCCT ACATCCAC CACACTCTCC chr21:44083244-44083324 45 4.78e-05 cacatcacac acatccac atgcaccaca chr21:43114207-43114287 63 7.64e-05 atccgtccat ccatccac ctatccatcc chr19:31192265-31192345 27 7.64e-05 acacaaacac acagacac acccaaacac chr16:1083727-1083807 38 7.64e-05 caccatccat ccatccac cagtccaccc chr2:96730689-96730769 13 7.64e-05 atccatccat ccatccac ccatctatcc chr1:22662927-22663007 51 7.64e-05 attcatccat ccatccac tcaatcacct chr21:43056257-43056337 45 7.64e-05 cccactccat ccatccac tcatccacct chr12:132053026-13205310 14 7.64e-05 atccattcat ccatccac ccatacatcc chr6:1403696-1403776 53 7.64e-05 acacactgac acagacac tcacatagac chr5:517258-517338 24 7.64e-05 atccattcac ccatccac tcactcatcc chr11:33425049-33425129 45 7.64e-05 gcacagacac acagacac gcatggacag chr7:156291643-156291723 48 7.64e-05 acataggtgc acagacac agagacactg chr10:28673607-28673687 48 7.64e-05 atccatccat ccatccac ctatccatcc chr21:43581691-43581771 28 7.64e-05 ataggtacac acagacac agagaaacac chr10:88413855-88413935 32 9.22e-05 accctcacac acacacac acacacacgc chr12:132642648-13264272 52 9.22e-05 cacacactac acacacac tacacacaca chr17:70553689-70553769 61 1.06e-04 actcatacac ccagacac acagagacgc chr7:158041839-158041919 11 1.19e-04 ATTCATATCA Ccacacac gtgcacacag chr19:6229687-6229767 27 1.19e-04 acccgtgaca ccacacac cacaccccta chr17:7010784-7010864 23 1.19e-04 atagaccaca ccacacAC AGATCCATca chr1:10721596-10721676 2 1.49e-04 G ACATTCAC ACGATcacat chr22:22451603-22451683 22 1.78e-04 caaagtcacc acatgcac atgcaaatag chr21:40384902-40384982 61 1.78e-04 cacacacacc acatgcac actctcacac chr2:39627261-39627341 63 2.04e-04 CCCCATCCCT CCATTCAC AGAATTATAA chr3:13693636-13693716 39 2.04e-04 tccctgcact ccagccac cctggccacc chr12:133040366-13304044 64 2.43e-04 catcaccatc acagtcac catcatcac chr6:166207963-166208043 21 2.72e-04 cacacactac acactcac atgctcactc chr22:22158167-22158247 21 2.72e-04 agctgggacc acaggcac atgccaccac chr1:53565600-53565680 73 2.72e-04 CCATCTGAGT ACACTCAC chr22:21046534-21046614 30 2.72e-04 agctgagact acaggcac acgtcaaaag chr7:2657743-2657823 12 4.68e-04 aaacacatgc ccacacaT GAAACAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:148160504-148160584 1.8e-05 47_[+5]_25 chr8:102406429-102406509 1.8e-05 69_[+5]_3 chr12:132641083-13264116 1.8e-05 47_[+5]_25 chr17:55726655-55726735 1.8e-05 20_[+5]_52 chr1:9120142-9120222 1.8e-05 58_[+5]_14 chr8:5930681-5930761 1.8e-05 7_[+5]_65 chr8:676994-677074 1.8e-05 72_[+5] chr4:6535946-6536026 1.8e-05 21_[+5]_51 chr15:42447206-42447286 1.8e-05 61_[+5]_11 chr1:26095762-26095842 1.8e-05 57_[+5]_15 chr21:39728415-39728495 1.8e-05 53_[+5]_19 chr11:126307726-12630780 3.3e-05 10_[+5]_62 chr12:76401305-76401385 3.3e-05 56_[+5]_16 chr11:34544561-34544641 4.8e-05 53_[+5]_19 chr21:44083244-44083324 4.8e-05 44_[+5]_28 chr21:43114207-43114287 7.6e-05 62_[+5]_10 chr19:31192265-31192345 7.6e-05 26_[+5]_46 chr16:1083727-1083807 7.6e-05 37_[+5]_35 chr2:96730689-96730769 7.6e-05 12_[+5]_60 chr1:22662927-22663007 7.6e-05 50_[+5]_22 chr21:43056257-43056337 7.6e-05 44_[+5]_28 chr12:132053026-13205310 7.6e-05 13_[+5]_59 chr6:1403696-1403776 7.6e-05 52_[+5]_20 chr5:517258-517338 7.6e-05 23_[+5]_49 chr11:33425049-33425129 7.6e-05 44_[+5]_28 chr7:156291643-156291723 7.6e-05 47_[+5]_25 chr10:28673607-28673687 7.6e-05 47_[+5]_25 chr21:43581691-43581771 7.6e-05 27_[+5]_45 chr10:88413855-88413935 9.2e-05 31_[+5]_41 chr12:132642648-13264272 9.2e-05 51_[+5]_21 chr17:70553689-70553769 0.00011 60_[+5]_12 chr7:158041839-158041919 0.00012 10_[+5]_62 chr19:6229687-6229767 0.00012 26_[+5]_46 chr17:7010784-7010864 0.00012 22_[+5]_50 chr1:10721596-10721676 0.00015 1_[+5]_71 chr22:22451603-22451683 0.00018 21_[+5]_51 chr21:40384902-40384982 0.00018 60_[+5]_12 chr2:39627261-39627341 0.0002 62_[+5]_10 chr3:13693636-13693716 0.0002 38_[+5]_34 chr12:133040366-13304044 0.00024 63_[+5]_9 chr6:166207963-166208043 0.00027 20_[+5]_52 chr22:22158167-22158247 0.00027 20_[+5]_52 chr1:53565600-53565680 0.00027 72_[+5] chr22:21046534-21046614 0.00027 29_[+5]_43 chr7:2657743-2657823 0.00047 11_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCATACAC width=8 seqs=45 chr7:148160504-148160584 ( 48) ACATACAC 1 chr8:102406429-102406509 ( 70) ACATACAC 1 chr12:132641083-13264116 ( 48) ACATACAC 1 chr17:55726655-55726735 ( 21) ACATACAC 1 chr1:9120142-9120222 ( 59) ACATACAC 1 chr8:5930681-5930761 ( 8) ACATACAC 1 chr8:676994-677074 ( 73) ACATACAC 1 chr4:6535946-6536026 ( 22) ACATACAC 1 chr15:42447206-42447286 ( 62) ACATACAC 1 chr1:26095762-26095842 ( 58) ACATACAC 1 chr21:39728415-39728495 ( 54) ACATACAC 1 chr11:126307726-12630780 ( 11) CCATACAC 1 chr12:76401305-76401385 ( 57) CCATACAC 1 chr11:34544561-34544641 ( 54) ACATCCAC 1 chr21:44083244-44083324 ( 45) ACATCCAC 1 chr21:43114207-43114287 ( 63) CCATCCAC 1 chr19:31192265-31192345 ( 27) ACAGACAC 1 chr16:1083727-1083807 ( 38) CCATCCAC 1 chr2:96730689-96730769 ( 13) CCATCCAC 1 chr1:22662927-22663007 ( 51) CCATCCAC 1 chr21:43056257-43056337 ( 45) CCATCCAC 1 chr12:132053026-13205310 ( 14) CCATCCAC 1 chr6:1403696-1403776 ( 53) ACAGACAC 1 chr5:517258-517338 ( 24) CCATCCAC 1 chr11:33425049-33425129 ( 45) ACAGACAC 1 chr7:156291643-156291723 ( 48) ACAGACAC 1 chr10:28673607-28673687 ( 48) CCATCCAC 1 chr21:43581691-43581771 ( 28) ACAGACAC 1 chr10:88413855-88413935 ( 32) ACACACAC 1 chr12:132642648-13264272 ( 52) ACACACAC 1 chr17:70553689-70553769 ( 61) CCAGACAC 1 chr7:158041839-158041919 ( 11) CCACACAC 1 chr19:6229687-6229767 ( 27) CCACACAC 1 chr17:7010784-7010864 ( 23) CCACACAC 1 chr1:10721596-10721676 ( 2) ACATTCAC 1 chr22:22451603-22451683 ( 22) ACATGCAC 1 chr21:40384902-40384982 ( 61) ACATGCAC 1 chr2:39627261-39627341 ( 63) CCATTCAC 1 chr3:13693636-13693716 ( 39) CCAGCCAC 1 chr12:133040366-13304044 ( 64) ACAGTCAC 1 chr6:166207963-166208043 ( 21) ACACTCAC 1 chr22:22158167-22158247 ( 21) ACAGGCAC 1 chr1:53565600-53565680 ( 73) ACACTCAC 1 chr22:21046534-21046614 ( 30) ACAGGCAC 1 chr7:2657743-2657823 ( 12) CCACACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 4.3e-011 118 71 -1214 -1214 -1214 212 -1214 -1214 187 -1214 -1214 -1214 -1214 -37 -8 121 102 9 -140 -123 -1214 212 -1214 -1214 187 -1214 -1214 -1214 -1214 209 -1214 -355 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 4.3e-011 0.622222 0.377778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.177778 0.222222 0.600000 0.555556 0.244444 0.088889 0.111111 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.977778 0.000000 0.022222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCATACAC MEME-5 regular expression -------------------------------------------------------------------------------- [AC]CA[TG][AC]CAC -------------------------------------------------------------------------------- Time 18.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:10721596-10721676 5.48e-05 22_[+4(1.58e-05)]_12_[+4(1.58e-05)]_\ 30 chr11:45000059-45000139 2.12e-03 8_[+3(4.12e-05)]_16_[+1(1.39e-05)]_\ 8_[+1(1.39e-05)]_8_[+1(1.39e-05)]_8 chr21:40384902-40384982 5.49e-05 17_[+4(1.58e-05)]_5_[+2(3.07e-05)]_\ 13_[+4(1.58e-05)]_21 chr1:202593306-202593386 2.12e-03 38_[+1(1.39e-05)]_12_[+1(1.39e-05)]_\ 14 chr22:22902755-22902835 8.60e-02 80 chr11:44811882-44811962 2.08e-03 17_[+1(1.39e-05)]_10_[+3(5.66e-05)]_\ 4_[+1(1.39e-05)]_25 chr1:7628870-7628950 3.92e-01 80 chr22:23394176-23394256 7.97e-01 80 chr21:39728415-39728495 1.46e-05 9_[+4(1.58e-05)]_[+4(1.58e-05)]_28_\ [+5(1.78e-05)]_4_[+4(5.14e-05)]_7 chr22:20847291-20847371 3.69e-01 80 chr9:123603693-123603773 7.44e-01 80 chr22:22308373-22308453 3.49e-01 80 chr1:36352366-36352446 1.01e-03 63_[+1(1.39e-05)]_9 chr5:10670364-10670444 1.19e-01 40_[+3(6.99e-05)]_32 chr8:142890038-142890118 2.62e-01 80 chr22:20744985-20745065 5.04e-05 15_[+4(1.58e-05)]_57 chr1:48057602-48057682 2.12e-03 6_[+1(1.39e-05)]_5_[+1(1.39e-05)]_\ 15_[+3(4.12e-05)]_17_[+1(1.39e-05)]_5 chr3:195511208-195511288 7.17e-02 80 chr22:20854937-20855017 7.56e-01 80 chr1:174141814-174141894 8.92e-01 80 chr22:22069728-22069808 7.35e-01 80 chr22:21430751-21430831 2.09e-03 80 chr21:43581691-43581771 4.72e-05 11_[+4(3.36e-05)]_8_[+5(7.64e-05)]_\ 6_[+4(1.58e-05)]_8_[+4(1.58e-05)]_15 chr10:1265885-1265965 1.66e-01 80 chr19:6955279-6955359 1.66e-01 80 chr10:28673607-28673687 1.02e-01 3_[+5(7.64e-05)]_12_[+5(7.64e-05)]_\ 16_[+5(7.64e-05)]_25 chr22:21965125-21965205 8.02e-01 80 chr7:156291643-156291723 1.84e-04 12_[+2(4.40e-05)]_13_[+4(3.36e-05)]_\ 6_[+5(7.64e-05)]_25 chr22:22165915-22165995 8.81e-01 80 chr10:72720197-72720277 2.11e-03 12_[+3(4.12e-05)]_4_[+1(1.39e-05)]_\ 5_[+1(1.39e-05)]_35 chr22:23609394-23609474 9.53e-01 80 chr10:73192141-73192221 2.12e-03 9_[+1(2.65e-05)]_2_[+1(1.39e-05)]_\ [+1(7.01e-05)]_[+3(2.65e-05)]_18_[+1(1.39e-05)]_11 chr11:33425049-33425129 4.73e-05 2_[+4(3.36e-05)]_2_[+5(7.64e-05)]_4_\ [+4(1.58e-05)]_4_[+5(7.64e-05)]_[+5(7.64e-05)]_28 chr20:29607946-29608026 1.35e-02 30_[+1(2.65e-05)]_42 chr1:207097025-207097105 1.62e-02 31_[+1(2.65e-05)]_5_[+1(2.65e-05)]_\ 28 chr12:76401305-76401385 1.99e-05 20_[+2(1.58e-05)]_28_[+5(3.28e-05)]_\ 3_[+5(1.78e-05)]_5 chr21:42522616-42522696 2.12e-03 27_[+1(1.39e-05)]_10_[+1(1.39e-05)]_\ 27 chr22:21936754-21936834 3.13e-01 80 chr1:226941415-226941495 3.75e-01 80 chr6:41422287-41422367 1.24e-03 34_[+1(2.65e-05)]_11_[+1(1.39e-05)]_\ 19 chr13:93051260-93051340 4.29e-01 80 chr12:131975061-13197514 4.61e-05 26_[+4(5.14e-05)]_14_[+4(1.58e-05)]_\ 24 chr5:517258-517338 1.49e-02 23_[+5(7.64e-05)]_28_[+5(7.64e-05)]_\ 13 chr2:23644613-23644693 2.87e-04 10_[+1(1.39e-05)]_32_[+1(1.39e-05)]_\ 14_[+1(4.28e-05)] chr12:131880108-13188018 2.14e-01 80 chr1:145118135-145118215 9.31e-01 80 chr1:19978194-19978274 8.62e-01 80 chr13:91400397-91400477 8.92e-01 80 chr13:90531314-90531394 3.82e-01 80 chr22:22070897-22070977 9.82e-01 80 chr11:69872084-69872164 1.66e-01 80 chr1:142785315-142785395 5.71e-01 80 chr3:13693636-13693716 4.04e-02 80 chr22:23118008-23118088 5.45e-02 19_[+4(5.14e-05)]_53 chr8:10890807-10890887 1.66e-01 80 chr5:2439782-2439862 1.27e-01 80 chr1:4429234-4429314 1.23e-01 80 chr22:23539423-23539503 2.48e-02 80 chr17:7010784-7010864 5.48e-05 23_[+2(1.58e-05)]_7_[+2(1.58e-05)]_\ [+2(8.86e-05)]_7_[+4(9.58e-05)]_[+2(1.58e-05)]_3 chr1:26095762-26095842 1.46e-05 1_[+4(1.58e-05)]_2_[+4(6.47e-05)]_\ 14_[+4(1.58e-05)]_6_[+5(3.28e-05)]_2_[+5(1.78e-05)]_[+2(1.58e-05)]_7 chr6:1403696-1403776 4.68e-05 2_[+4(1.58e-05)]_28_[+4(1.58e-05)]_\ 6_[+5(7.64e-05)]_20 chr9:131006153-131006233 1.75e-03 40_[+3(2.65e-05)]_19_[+1(1.39e-05)]_\ 5 chr20:26201912-26201992 9.62e-01 80 chr22:19919015-19919095 6.11e-02 80 chr22:22285591-22285671 4.03e-05 42_[+4(1.58e-05)]_30 chr12:132053026-13205310 2.53e-03 13_[+5(7.64e-05)]_4_[+5(4.78e-05)]_\ 47 chr4:7192092-7192172 1.46e-01 80 chr8:144031450-144031530 1.46e-01 80 chr17:63171210-63171290 1.19e-03 1_[+1(1.39e-05)]_12_[+1(4.28e-05)]_\ 4_[+1(1.39e-05)]_39 chr6:26702293-26702373 9.00e-02 80 chr21:43056257-43056337 1.38e-02 44_[+5(7.64e-05)]_28 chr8:91484662-91484742 9.35e-02 80 chr22:23368158-23368238 2.32e-01 80 chr1:17052073-17052153 2.77e-01 80 chr22:19425433-19425513 7.72e-01 80 chr22:21046534-21046614 9.19e-02 80 chr22:22890366-22890446 3.55e-04 8_[+4(7.96e-05)]_64 chr22:21010393-21010473 9.86e-01 80 chr1:246902333-246902413 2.07e-03 12_[+1(1.39e-05)]_22_[+1(4.28e-05)]_\ 12_[+1(1.39e-05)]_10 chr4:1499196-1499276 5.36e-02 80 chr6:31083184-31083264 1.09e-01 80 chr13:92171042-92171122 9.72e-02 80 chr22:22288985-22289065 6.08e-01 80 chr1:22662927-22663007 9.26e-02 2_[+5(7.64e-05)]_40_[+5(7.64e-05)]_\ 22 chr16:9495148-9495228 3.25e-01 80 chr22:21963649-21963729 4.55e-02 80 chr10:44192089-44192169 2.50e-02 4_[+1(7.01e-05)]_4_[+1(7.01e-05)]_\ 42_[+1(4.28e-05)]_6 chr6:166162847-166162927 1.75e-01 80 chr15:42447206-42447286 1.39e-05 5_[+4(1.58e-05)]_12_[+4(1.58e-05)]_\ 28_[+5(1.78e-05)]_11 chr8:142565281-142565361 2.94e-01 80 chr21:41511789-41511869 2.12e-03 11_[+1(1.39e-05)]_7_[+1(2.65e-05)]_\ 8_[+1(1.39e-05)]_1_[+3(4.12e-05)]_7_[+3(2.65e-05)]_6 chr21:44083244-44083324 3.24e-05 9_[+2(6.98e-05)]_12_[+4(1.58e-05)]_\ 2_[+2(1.58e-05)]_20_[+2(1.58e-05)]_5 chr1:53565600-53565680 8.21e-04 9_[+2(6.98e-05)]_15_[+4(7.96e-05)]_\ 11_[+4(7.96e-05)]_21 chr8:126626461-126626541 3.80e-02 31_[+1(8.24e-05)]_41 chr22:22237133-22237213 6.85e-01 80 chr22:20769963-20770043 5.82e-02 80 chr6:33401805-33401885 3.00e-01 80 chr20:26054830-26054910 1.80e-01 80 chr5:1046927-1047007 1.10e-01 80 chr19:46463611-46463691 9.71e-01 80 chr4:200032-200112 1.97e-03 27_[+1(4.28e-05)]_2_[+1(1.39e-05)]_\ 10_[+1(1.39e-05)]_8_[+1(1.39e-05)]_1 chr1:16597459-16597539 4.84e-01 80 chr12:122099856-12209993 3.66e-01 80 chr1:231578096-231578176 2.99e-01 80 chr11:134609487-13460956 2.12e-03 9_[+1(1.39e-05)]_13_[+1(2.65e-05)]_\ 3_[+1(1.39e-05)]_8_[+3(5.66e-05)]_15 chr22:19404464-19404544 3.80e-02 80 chr16:87243432-87243512 1.65e-01 80 chr13:92039968-92040048 7.87e-01 80 chr22:23338763-23338843 5.33e-02 80 chr11:45630959-45631039 1.67e-01 80 chr12:124577815-12457789 1.66e-01 80 chr22:17124166-17124246 3.20e-01 80 chr6:14109690-14109770 4.11e-01 80 chr2:96730689-96730769 7.98e-02 12_[+5(7.64e-05)]_16_[+5(7.64e-05)]_\ 36 chr22:22345789-22345869 1.92e-01 80 chr7:482920-483000 1.81e-01 80 chr4:6535946-6536026 1.46e-05 7_[+4(1.58e-05)]_2_[+4(3.36e-05)]_\ [+4(1.58e-05)]_22_[+4(1.58e-05)]_8_[+4(1.58e-05)]_1 chr9:123604277-123604357 8.56e-02 80 chr22:20109353-20109433 7.29e-03 62_[+2(3.07e-05)]_10 chr7:2657743-2657823 4.05e-05 39_[+4(1.58e-05)]_12_[+2(6.98e-05)]_\ 13 chr17:72598494-72598574 2.58e-02 80 chr21:11070262-11070342 7.38e-02 80 chr22:21179689-21179769 2.21e-01 80 chr11:69656449-69656529 3.70e-01 80 chr10:14017375-14017455 2.09e-03 20_[+1(1.39e-05)]_52 chr12:132642648-13264272 5.48e-05 2_[+4(1.58e-05)]_15_[+2(4.40e-05)]_\ 5_[+4(1.58e-05)]_3_[+4(1.58e-05)]_3_[+4(1.58e-05)]_12 chr8:676994-677074 2.64e-05 14_[+2(1.58e-05)]_6_[+2(1.58e-05)]_\ 14_[+5(1.78e-05)]_14_[+5(1.78e-05)] chr2:242890675-242890755 1.83e-03 24_[+1(1.39e-05)]_4_[+1(2.65e-05)]_\ 26_[+1(1.39e-05)]_2 chr22:20757705-20757785 9.74e-01 80 chr17:77995463-77995543 4.72e-05 6_[+2(6.98e-05)]_26_[+4(1.58e-05)]_\ 1_[+4(6.47e-05)]_5_[+4(1.58e-05)]_10 chr17:70553689-70553769 4.72e-05 16_[+4(3.36e-05)]_7_[+4(1.58e-05)]_\ 8_[+2(3.07e-05)]_7_[+4(9.58e-05)]_10 chr2:10508336-10508416 6.35e-05 3_[+1(8.24e-05)]_14_[+1(1.39e-05)]_\ 25_[+1(1.39e-05)]_14 chr21:11126949-11127029 4.20e-01 80 chr16:86338662-86338742 1.72e-03 13_[+1(1.39e-05)]_12_[+1(4.28e-05)]_\ 14_[+1(2.65e-05)]_17 chr4:5672176-5672256 1.52e-01 80 chr16:83030550-83030630 1.46e-01 80 chr16:87256101-87256181 5.24e-02 9_[+2(6.98e-05)]_63 chr22:23119777-23119857 3.01e-01 80 chr12:133040366-13304044 7.05e-02 80 chr22:22691475-22691555 7.66e-01 80 chr21:11082707-11082787 4.26e-02 80 chr22:22072490-22072570 2.56e-01 80 chr16:58121452-58121532 2.40e-04 1_[+4(7.96e-05)]_25_[+4(3.36e-05)]_\ 1_[+2(3.07e-05)]_29 chr22:22791939-22792019 9.82e-01 80 chr19:7107243-7107323 1.55e-01 4_[+3(6.99e-05)]_68 chr4:3716474-3716554 2.12e-03 17_[+1(1.39e-05)]_4_[+1(1.39e-05)]_\ 8_[+1(1.39e-05)]_18_[+1(1.39e-05)]_1 chr1:54098522-54098602 6.26e-03 23_[+3(4.12e-05)]_40_[+3(4.12e-05)]_\ 1 chr22:22305779-22305859 9.22e-01 80 chr6:35760885-35760965 7.44e-01 80 chr22:23393443-23393523 5.42e-01 80 chr22:22331415-22331495 1.57e-01 80 chr12:126162572-12616265 2.13e-01 80 chr6:42167911-42167991 3.86e-02 80 chr1:145292344-145292424 2.98e-01 80 chr21:11041560-11041640 3.07e-01 80 chr21:46462062-46462142 1.69e-03 12_[+1(1.39e-05)]_11_[+1(4.28e-05)]_\ 7_[+1(1.39e-05)]_26 chr12:113700480-11370056 8.92e-01 80 chr10:88413855-88413935 5.48e-05 5_[+4(1.58e-05)]_13_[+2(1.58e-05)]_\ 1_[+4(1.58e-05)]_37 chr12:108783437-10878351 1.55e-01 80 chr22:21929438-21929518 7.24e-01 80 chr22:22059960-22060040 5.54e-01 80 chr9:91673856-91673936 5.55e-01 80 chr12:48629210-48629290 9.84e-01 80 chr8:5930681-5930761 1.46e-05 2_[+2(8.86e-05)]_1_[+4(1.58e-05)]_6_\ [+4(1.58e-05)]_1_[+2(1.58e-05)]_5_[+4(1.58e-05)]_6_[+4(1.58e-05)]_1_\ [+2(1.58e-05)]_2 chr3:195446929-195447009 9.46e-01 80 chr11:44723506-44723586 8.74e-01 80 chr6:138297867-138297947 5.44e-05 69_[+4(1.58e-05)]_3 chr12:129123769-12912384 2.14e-01 80 chr12:108972761-10897284 5.89e-02 80 chr1:142804577-142804657 5.06e-01 80 chr21:11173267-11173347 1.12e-02 25_[+1(4.28e-05)]_47 chr20:58262175-58262255 9.99e-02 80 chr22:22451603-22451683 4.30e-02 80 chr16:1083727-1083807 8.48e-03 2_[+5(7.64e-05)]_12_[+5(7.64e-05)]_\ 7_[+5(7.64e-05)]_35 chr6:4180405-4180485 8.94e-01 80 chr22:21959726-21959806 9.22e-01 80 chr1:226837052-226837132 2.09e-03 45_[+1(1.39e-05)]_17_[+3(4.12e-05)]_\ 2 chr22:22158167-22158247 1.75e-01 80 chr21:11134949-11135029 1.51e-02 80 chr19:31192265-31192345 4.73e-05 11_[+2(8.86e-05)]_7_[+5(7.64e-05)]_\ 6_[+4(1.58e-05)]_18_[+4(1.58e-05)]_6 chr22:19214082-19214162 9.08e-01 80 chr22:22280732-22280812 2.74e-02 80 chr22:22849187-22849267 1.15e-01 80 chr22:20957886-20957966 2.31e-01 80 chr6:166207963-166208043 5.49e-05 9_[+4(1.58e-05)]_2_[+2(3.07e-05)]_\ 29_[+4(1.58e-05)]_6_[+2(3.07e-05)]_2 chr22:19516636-19516716 9.99e-01 80 chr1:22259129-22259209 9.01e-01 80 chr1:120626747-120626827 8.84e-03 72_[+3(2.65e-05)] chr2:96425478-96425558 7.97e-02 80 chr22:23434903-23434983 1.39e-02 80 chr22:20880629-20880709 7.63e-01 80 chr22:19413329-19413409 3.39e-01 80 chr19:7907088-7907168 7.21e-04 8_[+1(1.39e-05)]_16_[+1(1.39e-05)]_\ 23_[+1(4.28e-05)]_9 chr1:9120142-9120222 1.46e-05 3_[+4(1.58e-05)]_1_[+4(1.58e-05)]_3_\ [+4(1.58e-05)]_5_[+4(1.58e-05)]_3_[+4(1.58e-05)]_3_[+5(1.78e-05)]_3_\ [+4(1.58e-05)]_3 chr3:46964881-46964961 9.81e-01 80 chr22:23008638-23008718 7.65e-01 80 chr21:43114207-43114287 7.21e-03 2_[+5(7.64e-05)]_32_[+5(7.64e-05)]_\ 12_[+5(7.64e-05)]_10 chr1:228702650-228702730 2.31e-02 80 chr22:22505844-22505924 5.00e-02 57_[+4(9.58e-05)]_15 chr11:64147311-64147391 9.50e-04 17_[+3(4.12e-05)]_40_[+1(1.39e-05)]_\ 7 chr22:22101710-22101790 7.46e-01 80 chr19:6229687-6229767 1.62e-05 1_[+4(1.58e-05)]_17_[+4(6.47e-05)]_\ 23_[+4(6.47e-05)]_15 chr22:21174915-21174995 2.62e-01 80 chr6:14065741-14065821 2.12e-03 26_[+1(4.28e-05)]_16_[+1(1.39e-05)]_\ 22 chr17:38615382-38615462 1.68e-02 54_[+1(2.65e-05)]_18 chr14:65640941-65641021 2.12e-03 3_[+1(8.24e-05)]_1_[+1(1.39e-05)]_5_\ [+1(1.39e-05)]_2_[+1(1.39e-05)]_7_[+3(4.12e-05)]_5_[+1(1.39e-05)]_9 chr11:43709154-43709234 8.37e-01 80 chr17:55726655-55726735 1.46e-05 5_[+4(1.58e-05)]_7_[+5(1.78e-05)]_3_\ [+4(3.36e-05)]_33_[+4(3.36e-05)] chr16:23327987-23328067 1.00e-01 50_[+2(6.98e-05)]_22 chr7:158041839-158041919 5.48e-05 10_[+4(6.47e-05)]_11_[+4(1.58e-05)]_\ 2_[+4(3.36e-05)]_[+2(1.58e-05)]_25 chr1:35487926-35488006 4.51e-01 80 chr22:19570545-19570625 8.05e-01 80 chr1:214633852-214633932 4.05e-05 15_[+4(1.58e-05)]_[+4(1.58e-05)]_\ [+4(1.58e-05)]_41 chr22:19825457-19825537 6.63e-01 80 chr12:132641083-13264116 1.46e-05 21_[+4(1.58e-05)]_4_[+4(1.58e-05)]_\ 6_[+5(1.78e-05)]_4_[+4(1.58e-05)]_4_[+4(1.58e-05)]_1 chr22:21373193-21373273 3.50e-01 80 chr8:12420759-12420839 1.05e-01 80 chr22:23342209-23342289 6.05e-01 80 chr22:20803849-20803929 5.44e-01 80 chr8:102406429-102406509 1.46e-05 7_[+4(1.58e-05)]_2_[+4(1.58e-05)]_2_\ [+4(1.58e-05)]_2_[+5(1.78e-05)]_12_[+5(1.78e-05)]_4_[+5(1.78e-05)]_3 chr6:26207657-26207737 5.10e-01 80 chr1:142792202-142792282 3.55e-01 80 chr1:38385446-38385526 4.42e-01 80 chr6:170830824-170830904 3.86e-01 80 chr11:126307726-12630780 1.30e-05 10_[+5(3.28e-05)]_22_[+4(1.58e-05)]_\ 8_[+4(1.58e-05)]_16 chr21:11119433-11119513 7.41e-01 80 chr21:11054831-11054911 4.04e-01 80 chr4:1498640-1498720 5.42e-01 80 chr7:148160504-148160584 4.61e-05 2_[+2(3.07e-05)]_17_[+4(3.36e-05)]_\ 12_[+5(1.78e-05)]_3_[+2(3.07e-05)]_4_[+2(8.86e-05)]_2 chr13:94009997-94010077 2.30e-02 40_[+3(5.66e-05)]_32 chr12:114130412-11413049 2.11e-03 33_[+1(2.65e-05)]_6_[+1(1.39e-05)]_\ 25 chr19:45562184-45562264 2.25e-01 80 chr10:82416298-82416378 2.12e-03 13_[+3(2.65e-05)]_4_[+1(1.39e-05)]_\ 4_[+1(1.39e-05)]_35 chr11:70633419-70633499 8.86e-01 80 chr12:111345972-11134605 4.19e-02 51_[+1(4.28e-05)]_21 chr1:227937402-227937482 1.14e-03 37_[+1(1.39e-05)]_4_[+1(1.39e-05)]_\ 23 chr2:39627261-39627341 1.81e-01 80 chr12:111133421-11113350 1.92e-01 80 chr7:150996958-150997038 6.60e-04 35_[+3(4.12e-05)]_20_[+1(1.39e-05)]_\ 9 chr22:23539909-23539989 1.99e-03 41_[+1(1.39e-05)]_31 chrX:151985316-151985396 1.34e-01 56_[+1(8.24e-05)]_16 chr1:7667300-7667380 1.69e-02 46_[+1(2.65e-05)]_26 chr17:72565270-72565350 1.73e-03 4_[+3(2.65e-05)]_1_[+1(1.39e-05)]_\ 13_[+1(1.39e-05)]_9_[+1(1.39e-05)]_13_[+3(2.65e-05)] chr1:22598534-22598614 3.77e-01 80 chr1:7613253-7613333 5.30e-01 80 chr11:126029175-12602925 7.05e-04 34_[+1(4.28e-05)]_14_[+1(1.39e-05)]_\ 16 chr11:34544561-34544641 9.99e-04 40_[+4(9.58e-05)]_5_[+5(4.78e-05)]_\ 19 chr20:62175229-62175309 3.82e-01 80 chr22:19113951-19114031 1.33e-03 80 chr22:22407412-22407492 4.25e-02 29_[+1(7.01e-05)]_43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************