******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TRIM25.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:203594136-203594216 1.0000 80 chr5:139078515-139078595 1.0000 80 chr1:15670441-15670521 1.0000 80 chr15:40729480-40729560 1.0000 80 chr17:652104-652184 1.0000 80 chr11:1884911-1884991 1.0000 80 chr17:45354305-45354385 1.0000 80 chr1:168254784-168254864 1.0000 80 chr17:73408817-73408897 1.0000 80 chr7:30919135-30919215 1.0000 80 chr14:101143976-10114405 1.0000 80 chr8:74185606-74185686 1.0000 80 chr19:59055067-59055147 1.0000 80 chr2:100098461-100098541 1.0000 80 chr12:97383887-97383967 1.0000 80 chr8:144751662-144751742 1.0000 80 chrX:68209782-68209862 1.0000 80 chr2:9331238-9331318 1.0000 80 chr3:42270382-42270462 1.0000 80 chr3:48673221-48673301 1.0000 80 chr1:167685450-167685530 1.0000 80 chr22:21354851-21354931 1.0000 80 chr19:17490340-17490420 1.0000 80 chr16:30670341-30670421 1.0000 80 chr7:56142122-56142202 1.0000 80 chr8:21773008-21773088 1.0000 80 chr7:112190681-112190761 1.0000 80 chr9:128004224-128004304 1.0000 80 chr1:230204975-230205055 1.0000 80 chr1:27985974-27986054 1.0000 80 chr1:185126812-185126892 1.0000 80 chr6:34759497-34759577 1.0000 80 chr17:75632034-75632114 1.0000 80 chr1:156662855-156662935 1.0000 80 chr9:115303058-115303138 1.0000 80 chr16:88553068-88553148 1.0000 80 chr1:29483107-29483187 1.0000 80 chr3:170074336-170074416 1.0000 80 chr11:68120282-68120362 1.0000 80 chr1:16571011-16571091 1.0000 80 chr6:154832244-154832324 1.0000 80 chr22:41487393-41487473 1.0000 80 chr1:153918019-153918099 1.0000 80 chr1:38992269-38992349 1.0000 80 chr21:47877737-47877817 1.0000 80 chr9:130504569-130504649 1.0000 80 chr16:29314022-29314102 1.0000 80 chr7:99756851-99756931 1.0000 80 chr19:55988372-55988452 1.0000 80 chr22:20948463-20948543 1.0000 80 chr5:68484753-68484833 1.0000 80 chr7:12729886-12729966 1.0000 80 chr3:58223389-58223469 1.0000 80 chr1:32986564-32986644 1.0000 80 chr2:179315057-179315137 1.0000 80 chr12:57941502-57941582 1.0000 80 chr17:27054684-27054764 1.0000 80 chr19:48759673-48759753 1.0000 80 chr1:110473860-110473940 1.0000 80 chr6:31832057-31832137 1.0000 80 chr1:181003407-181003487 1.0000 80 chr5:176433267-176433347 1.0000 80 chr14:23356632-23356712 1.0000 80 chr6:150038752-150038832 1.0000 80 chr7:75678792-75678872 1.0000 80 chr8:135725980-135726060 1.0000 80 chr1:22107783-22107863 1.0000 80 chr6:31508557-31508637 1.0000 80 chr7:153105491-153105571 1.0000 80 chr1:52607181-52607261 1.0000 80 chr19:860118-860198 1.0000 80 chr7:65216648-65216728 1.0000 80 chr19:50231545-50231625 1.0000 80 chr6:43670830-43670910 1.0000 80 chr9:131013532-131013612 1.0000 80 chr6:111195449-111195529 1.0000 80 chr6:42848310-42848390 1.0000 80 chr15:43801990-43802070 1.0000 80 chr1:157245102-157245182 1.0000 80 chr7:141437564-141437644 1.0000 80 chr1:174937561-174937641 1.0000 80 chr16:4358188-4358268 1.0000 80 chr10:73649129-73649209 1.0000 80 chr19:45542837-45542917 1.0000 80 chr17:40730198-40730278 1.0000 80 chr12:120107351-12010743 1.0000 80 chr4:68410750-68410830 1.0000 80 chr1:181057313-181057393 1.0000 80 chr22:22200558-22200638 1.0000 80 chr19:14638874-14638954 1.0000 80 chr6:33285609-33285689 1.0000 80 chr3:33840844-33840924 1.0000 80 chr2:152267148-152267228 1.0000 80 chr11:440092-440172 1.0000 80 chr7:140097770-140097850 1.0000 80 chr2:65586654-65586734 1.0000 80 chr1:173389651-173389731 1.0000 80 chr17:4871079-4871159 1.0000 80 chr2:145282373-145282453 1.0000 80 chr12:116989084-11698916 1.0000 80 chr5:139944759-139944839 1.0000 80 chr1:226310584-226310664 1.0000 80 chr1:167586961-167587041 1.0000 80 chr6:71275682-71275762 1.0000 80 chr5:98263504-98263584 1.0000 80 chr16:31105671-31105751 1.0000 80 chr19:36135785-36135865 1.0000 80 chr1:246350557-246350637 1.0000 80 chrX:70331063-70331143 1.0000 80 chr1:43146753-43146833 1.0000 80 chr19:46405573-46405653 1.0000 80 chr2:219166188-219166268 1.0000 80 chr22:21239080-21239160 1.0000 80 chr7:100304033-100304113 1.0000 80 chr11:61736557-61736637 1.0000 80 chr7:105753524-105753604 1.0000 80 chr6:30875307-30875387 1.0000 80 chr17:47647064-47647144 1.0000 80 chr12:49716231-49716311 1.0000 80 chr7:100896022-100896102 1.0000 80 chr1:156252100-156252180 1.0000 80 chr17:27138328-27138408 1.0000 80 chr18:32869406-32869486 1.0000 80 chr7:142656461-142656541 1.0000 80 chr3:130097063-130097143 1.0000 80 chr12:56325397-56325477 1.0000 80 chr1:44502986-44503066 1.0000 80 chr11:59333027-59333107 1.0000 80 chr6:34760523-34760603 1.0000 80 chr13:28024802-28024882 1.0000 80 chr17:28804009-28804089 1.0000 80 chr10:17009739-17009819 1.0000 80 chr6:4021146-4021226 1.0000 80 chr20:62496063-62496143 1.0000 80 chr6:27441510-27441590 1.0000 80 chr15:40389294-40389374 1.0000 80 chr6:13924694-13924774 1.0000 80 chr7:107201391-107201471 1.0000 80 chr19:4328010-4328090 1.0000 80 chr1:109102209-109102289 1.0000 80 chr6:30711186-30711266 1.0000 80 chr22:30615807-30615887 1.0000 80 chr10:74927443-74927523 1.0000 80 chr8:98787563-98787643 1.0000 80 chr1:207864995-207865075 1.0000 80 chr7:120679403-120679483 1.0000 80 chr6:41041770-41041850 1.0000 80 chr2:62523696-62523776 1.0000 80 chr1:182324409-182324489 1.0000 80 chr8:97284354-97284434 1.0000 80 chr16:75300062-75300142 1.0000 80 chr12:48167670-48167750 1.0000 80 chr12:51476782-51476862 1.0000 80 chr16:30649417-30649497 1.0000 80 chr1:167195283-167195363 1.0000 80 chr7:72992210-72992290 1.0000 80 chr6:27807259-27807339 1.0000 80 chr6:41888401-41888481 1.0000 80 chr7:158652328-158652408 1.0000 80 chr19:4399475-4399555 1.0000 80 chr1:32577448-32577528 1.0000 80 chr11:15671741-15671821 1.0000 80 chr5:43064743-43064823 1.0000 80 chr15:72523024-72523104 1.0000 80 chr1:45452767-45452847 1.0000 80 chr10:43911665-43911745 1.0000 80 chr2:179142605-179142685 1.0000 80 chr18:3654999-3655079 1.0000 80 chr1:25089073-25089153 1.0000 80 chr16:30597413-30597493 1.0000 80 chr4:87894841-87894921 1.0000 80 chr6:27726104-27726184 1.0000 80 chr22:22367309-22367389 1.0000 80 chr18:12702084-12702164 1.0000 80 chr16:85644542-85644622 1.0000 80 chr2:27580267-27580347 1.0000 80 chr1:12173605-12173685 1.0000 80 chr7:149322482-149322562 1.0000 80 chr10:71074388-71074468 1.0000 80 chr6:43739989-43740069 1.0000 80 chr11:75528079-75528159 1.0000 80 chr2:74667335-74667415 1.0000 80 chr1:227585118-227585198 1.0000 80 chr1:165737729-165737809 1.0000 80 chr4:24421160-24421240 1.0000 80 chr19:14530644-14530724 1.0000 80 chr6:28721277-28721357 1.0000 80 chr10:43893496-43893576 1.0000 80 chr6:3163856-3163936 1.0000 80 chr22:19131702-19131782 1.0000 80 chr12:44152595-44152675 1.0000 80 chr7:150102898-150102978 1.0000 80 chr6:28235351-28235431 1.0000 80 chr19:50093885-50093965 1.0000 80 chr1:156475555-156475635 1.0000 80 chr6:17702589-17702669 1.0000 80 chr2:183581329-183581409 1.0000 80 chr19:7580627-7580707 1.0000 80 chr21:45080440-45080520 1.0000 80 chr8:42529832-42529912 1.0000 80 chr10:75909970-75910050 1.0000 80 chr6:42186014-42186094 1.0000 80 chr17:42219172-42219252 1.0000 80 chr9:124975541-124975621 1.0000 80 chr6:30876261-30876341 1.0000 80 chr1:179850965-179851045 1.0000 80 chr7:156741941-156742021 1.0000 80 chr12:65003168-65003248 1.0000 80 chr4:54931563-54931643 1.0000 80 chr16:53980053-53980133 1.0000 80 chr6:28301534-28301614 1.0000 80 chr1:154580168-154580248 1.0000 80 chr16:186430-186510 1.0000 80 chr7:120677486-120677566 1.0000 80 chr19:41856929-41857009 1.0000 80 chr1:110091713-110091793 1.0000 80 chr16:3032598-3032678 1.0000 80 chr7:150075709-150075789 1.0000 80 chr21:34924284-34924364 1.0000 80 chr6:126285960-126286040 1.0000 80 chr1:41158259-41158339 1.0000 80 chr10:75692181-75692261 1.0000 80 chr3:45769818-45769898 1.0000 80 chr1:52087700-52087780 1.0000 80 chr19:39227387-39227467 1.0000 80 chrX:122918477-122918557 1.0000 80 chr1:1166456-1166536 1.0000 80 chr7:92685195-92685275 1.0000 80 chr1:26963529-26963609 1.0000 80 chr6:42748457-42748537 1.0000 80 chr17:74720788-74720868 1.0000 80 chr8:116660379-116660459 1.0000 80 chrX:48645307-48645387 1.0000 80 chr1:52868414-52868494 1.0000 80 chr1:156897988-156898068 1.0000 80 chr1:174129373-174129453 1.0000 80 chr11:12146813-12146893 1.0000 80 chr10:70716630-70716710 1.0000 80 chr19:3324653-3324733 1.0000 80 chr20:3993052-3993132 1.0000 80 chr19:7935997-7936077 1.0000 80 chr9:47187609-47187689 1.0000 80 chr12:53615979-53616059 1.0000 80 chr6:161735335-161735415 1.0000 80 chr19:2095818-2095898 1.0000 80 chr6:26205984-26206064 1.0000 80 chr12:49245180-49245260 1.0000 80 chr2:38604902-38604982 1.0000 80 chr4:115516557-115516637 1.0000 80 chr16:30570265-30570345 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TRIM25/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TRIM25.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.257 C 0.248 G 0.246 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.257 C 0.248 G 0.246 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCWGCCTS MEME-1 width = 8 sites = 75 llr = 556 E-value = 2.0e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCWGCCTS MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::7::::1 pos.-specific C 7a:28a25 probability G :::82::4 matrix T 3:3:::8: bits 2.0 * * 1.8 * * 1.6 * * 1.4 * *** Relative 1.2 ** **** Entropy 1.0 ******* (10.7 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGCCTC consensus T T CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCTS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:39227387-39227467 61 1.48e-05 cttctaaccc ccagcctc tctctgtccc chrX:122918477-122918557 16 2.95e-05 gagtttgaga ccagcctg gccaacgtgg chr7:150075709-150075789 12 2.95e-05 gagttcgaga ccagcctg ggcaacatgg chr16:186430-186510 59 2.95e-05 gagttggaga ccagcctg gccaacatgg chr9:124975541-124975621 47 2.95e-05 ggtaccttgt ccagcctg ttctctcccc chr6:28721277-28721357 32 2.95e-05 ccattgcact ccagcctg gaggccaaga chr2:27580267-27580347 53 2.95e-05 gaattcgata ccagcctg ggcaacatag chr18:12702084-12702164 9 2.95e-05 actgcact ccagcctg ggcaacagag chr10:43911665-43911745 7 2.95e-05 tgcact ccagcctg ggcaagaaga chr11:15671741-15671821 36 2.95e-05 CTGCGGAGAC CCAGCCTG GAGAAAAACG chr20:62496063-62496143 18 2.95e-05 ccatggcact ccagcctg ggcaacaaga chr6:43670830-43670910 52 2.95e-05 CCTAAGGCAT CCAGCCTG TGGAGCTGCT chr1:110473860-110473940 22 2.95e-05 CCAGCCTAGC CCAGCCTG GGAAAATGGC chr5:139078515-139078595 17 2.95e-05 CGCTGCCCGC CCAGCCTG GTGAAAATGT chr19:2095818-2095898 35 4.40e-05 aagtgattct cctgcctc agcctcctca chr7:156741941-156742021 58 4.40e-05 aagcgattct cctgcctc agcctccgag chr7:72992210-72992290 2 4.40e-05 c cctgcctc ggcctcccaa chrX:70331063-70331143 5 4.40e-05 agac cctgcctc aaaagaaaga chr6:42848310-42848390 50 4.40e-05 aagcgattct cctgcctc agtctcccga chr17:27054684-27054764 63 4.40e-05 aagcgattct cctgcctc agcctcccga chr12:44152595-44152675 2 7.32e-05 T TCAGCCTC CGACAGGGGC chr1:45452767-45452847 50 7.32e-05 ttttcctccc tcagcctc ccgaggagct chr6:71275682-71275762 15 7.32e-05 ttcttctacc tcagcctc ccaagtagct chr16:4358188-4358268 14 7.32e-05 ttctcctcct tcagcctc ccgagtagct chr19:48759673-48759753 29 7.32e-05 ttctcttgcc tcagcctc ccgagtagct chr9:130504569-130504649 62 7.32e-05 ttcttctgcc tcagcctc cagaggagct chr6:154832244-154832324 54 7.32e-05 ttctcccgcc tcagcctc cggagtagct chr9:115303058-115303138 53 7.32e-05 ttctcccatc tcagcctc ctgagtagct chr12:49245180-49245260 44 1.18e-04 ccattgcact ccagccta ggcgacagag chr19:50093885-50093965 67 1.18e-04 ACCCAGGAGC CCAGCCCC GGCTGT chr18:3654999-3655079 52 1.18e-04 CCTTGAAACT CCAGCCCC CTGAACGGCC chr1:246350557-246350637 1 1.18e-04 . ccagccta ggcaacagag chr9:131013532-131013612 62 1.18e-04 AATTCCTCTC CCAGCCCC TGGGGAGCCT chr8:135725980-135726060 44 1.18e-04 ATGATATCTT CCAGCCCC TAACCCTCAC chr5:176433267-176433347 36 1.18e-04 TGGGAAGGAC CCAGCCCC GGCATCTGGA chr22:30615807-30615887 72 1.33e-04 ctctttcttt ccaccctc t chr5:139944759-139944839 36 1.33e-04 GACACTCACA CCACCCTC ATTCAAACAC chr6:161735335-161735415 24 1.62e-04 tgtctctttc tctgcctc tgccagccgc chr10:43893496-43893576 63 1.62e-04 cactgcaacc tctgcctc ctgggttaag chr7:158652328-158652408 73 2.21e-04 atcgtgttgt ccaggctg chr6:30875307-30875387 32 2.21e-04 ctcttgtcgc ccaggctg gcgtgtaatg chr22:21239080-21239160 25 2.21e-04 cttttgttgc ccaggctg cagtgcaatg chr19:14638874-14638954 29 2.21e-04 accacgttgt ccaggctg gtcttgaatt chr12:120107351-12010743 72 2.21e-04 actctgttgc ccaggctg g chr6:31832057-31832137 2 2.21e-04 g ccaggctg gtctcgaact chr14:101143976-10114405 44 2.21e-04 AGCCTGTGCT TCTGCCTG GCCTGGCCGT chr19:3324653-3324733 40 2.50e-04 gtccacatga cctgcccc atcctctccc chr7:120679403-120679483 63 2.50e-04 ttgtgtattt cctgcccc aacccttaaa chr1:15670441-15670521 13 2.50e-04 GCGTTGGGCG CCTGCCTA GTCTTCCTAG chr13:28024802-28024882 61 2.79e-04 TTGCTGCTCA CCTGGCTC CCGCTGCTCC chr7:65216648-65216728 36 2.79e-04 GCTCCATATC CCTGGCTC CCTGAGATCT chr6:34760523-34760603 36 2.93e-04 ATCCTATGCC CCTGCCCG TTCTAAATAA chr6:26205984-26206064 33 3.53e-04 cgtccttatc cctccctg atttcctgtt chr2:183581329-183581409 31 3.53e-04 CCACCTTCCT CCTCCCTG TTATTCACAC chr16:31105671-31105751 67 3.53e-04 GCTGGGTAGC TCAGCCCC TGTGCA chr22:21354851-21354931 39 3.53e-04 GCCCAGTCCC TCAGCCTA GGGGTGGGAG chr3:48673221-48673301 36 3.53e-04 GCCGGTGACC CCAGCCTT AACTCGTAGG chr11:1884911-1884991 51 3.53e-04 CTGGGCTGCT CCTCCCTG GGCCAGGGCC chr6:111195449-111195529 44 3.82e-04 AGTTTTAACG CCTGGCTG CGTTCGCCTT chr21:47877737-47877817 42 3.82e-04 TTTCACTAGT TCACCCTC CTACTTCACC chr8:74185606-74185686 45 3.82e-04 actgtcacaa cctggctg ggcgtgtgct chr7:30919135-30919215 26 4.12e-04 ctctcccacc tcagcccg caccactctc chr10:73649129-73649209 52 4.42e-04 ACCGTCTCTC CCAGCCCA TGGGAAATTG chr1:203594136-203594216 6 4.42e-04 TGAGC CCAGCCCA ACCAGTCTAA chr2:38604902-38604982 16 4.87e-04 CTCTCCCCAT CCACCCCC CAAGTTGTTG chr1:227585118-227585198 65 4.87e-04 tgcatgtgcc ccacccta taaccttc chr1:156252100-156252180 14 4.87e-04 CCTTCAATTC CCACCCTA TTACCCCAAC chr6:42748457-42748537 60 5.61e-04 gctgtgtcgc ccaggcta gagtgcaatg chr7:153105491-153105571 43 5.61e-04 ttctcctttt cctgcctt ctatttgatt chr10:75692181-75692261 37 5.90e-04 GGGCAGCACC TCTCCCTC CCGACACCTG chr12:48167670-48167750 68 5.90e-04 GGGAAGCCCA TCTCCCTC CTTCC chr6:41041770-41041850 41 5.90e-04 TTTTGTGAAA TCTCCCTC CCTTGGGAAT chr4:24421160-24421240 1 7.07e-04 . TCAGCCTT GGAGAACTTC chr1:174129373-174129453 32 7.51e-04 ATGACAAACA CCTCCCCC CAACCCCCAC chr19:4328010-4328090 14 7.80e-04 GTGGCCCAGA CCTGGCCC CTGCGTACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCTS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:39227387-39227467 1.5e-05 60_[+1]_12 chrX:122918477-122918557 3e-05 15_[+1]_57 chr7:150075709-150075789 3e-05 11_[+1]_61 chr16:186430-186510 3e-05 58_[+1]_14 chr9:124975541-124975621 3e-05 46_[+1]_26 chr6:28721277-28721357 3e-05 31_[+1]_41 chr2:27580267-27580347 3e-05 52_[+1]_20 chr18:12702084-12702164 3e-05 8_[+1]_64 chr10:43911665-43911745 3e-05 6_[+1]_66 chr11:15671741-15671821 3e-05 35_[+1]_37 chr20:62496063-62496143 3e-05 17_[+1]_55 chr6:43670830-43670910 3e-05 51_[+1]_21 chr1:110473860-110473940 3e-05 21_[+1]_51 chr5:139078515-139078595 3e-05 16_[+1]_56 chr19:2095818-2095898 4.4e-05 34_[+1]_38 chr7:156741941-156742021 4.4e-05 57_[+1]_15 chr7:72992210-72992290 4.4e-05 1_[+1]_71 chrX:70331063-70331143 4.4e-05 4_[+1]_68 chr6:42848310-42848390 4.4e-05 49_[+1]_23 chr17:27054684-27054764 4.4e-05 62_[+1]_10 chr12:44152595-44152675 7.3e-05 1_[+1]_71 chr1:45452767-45452847 7.3e-05 49_[+1]_23 chr6:71275682-71275762 7.3e-05 14_[+1]_58 chr16:4358188-4358268 7.3e-05 13_[+1]_59 chr19:48759673-48759753 7.3e-05 28_[+1]_44 chr9:130504569-130504649 7.3e-05 61_[+1]_11 chr6:154832244-154832324 7.3e-05 53_[+1]_19 chr9:115303058-115303138 7.3e-05 52_[+1]_20 chr12:49245180-49245260 0.00012 43_[+1]_29 chr19:50093885-50093965 0.00012 66_[+1]_6 chr18:3654999-3655079 0.00012 51_[+1]_21 chr1:246350557-246350637 0.00012 [+1]_72 chr9:131013532-131013612 0.00012 61_[+1]_11 chr8:135725980-135726060 0.00012 43_[+1]_29 chr5:176433267-176433347 0.00012 35_[+1]_37 chr22:30615807-30615887 0.00013 71_[+1]_1 chr5:139944759-139944839 0.00013 35_[+1]_37 chr6:161735335-161735415 0.00016 23_[+1]_49 chr10:43893496-43893576 0.00016 62_[+1]_10 chr7:158652328-158652408 0.00022 72_[+1] chr6:30875307-30875387 0.00022 31_[+1]_41 chr22:21239080-21239160 0.00022 24_[+1]_48 chr19:14638874-14638954 0.00022 28_[+1]_44 chr12:120107351-12010743 0.00022 71_[+1]_1 chr6:31832057-31832137 0.00022 1_[+1]_71 chr14:101143976-10114405 0.00022 43_[+1]_29 chr19:3324653-3324733 0.00025 39_[+1]_33 chr7:120679403-120679483 0.00025 62_[+1]_10 chr1:15670441-15670521 0.00025 12_[+1]_60 chr13:28024802-28024882 0.00028 60_[+1]_12 chr7:65216648-65216728 0.00028 35_[+1]_37 chr6:34760523-34760603 0.00029 35_[+1]_37 chr6:26205984-26206064 0.00035 32_[+1]_40 chr2:183581329-183581409 0.00035 30_[+1]_42 chr16:31105671-31105751 0.00035 66_[+1]_6 chr22:21354851-21354931 0.00035 38_[+1]_34 chr3:48673221-48673301 0.00035 35_[+1]_37 chr11:1884911-1884991 0.00035 50_[+1]_22 chr6:111195449-111195529 0.00038 43_[+1]_29 chr21:47877737-47877817 0.00038 41_[+1]_31 chr8:74185606-74185686 0.00038 44_[+1]_28 chr7:30919135-30919215 0.00041 25_[+1]_47 chr10:73649129-73649209 0.00044 51_[+1]_21 chr1:203594136-203594216 0.00044 5_[+1]_67 chr2:38604902-38604982 0.00049 15_[+1]_57 chr1:227585118-227585198 0.00049 64_[+1]_8 chr1:156252100-156252180 0.00049 13_[+1]_59 chr6:42748457-42748537 0.00056 59_[+1]_13 chr7:153105491-153105571 0.00056 42_[+1]_30 chr10:75692181-75692261 0.00059 36_[+1]_36 chr12:48167670-48167750 0.00059 67_[+1]_5 chr6:41041770-41041850 0.00059 40_[+1]_32 chr4:24421160-24421240 0.00071 [+1]_72 chr1:174129373-174129453 0.00075 31_[+1]_41 chr19:4328010-4328090 0.00078 13_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCTS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCWGCCTS width=8 seqs=75 chr19:39227387-39227467 ( 61) CCAGCCTC 1 chrX:122918477-122918557 ( 16) CCAGCCTG 1 chr7:150075709-150075789 ( 12) CCAGCCTG 1 chr16:186430-186510 ( 59) CCAGCCTG 1 chr9:124975541-124975621 ( 47) CCAGCCTG 1 chr6:28721277-28721357 ( 32) CCAGCCTG 1 chr2:27580267-27580347 ( 53) CCAGCCTG 1 chr18:12702084-12702164 ( 9) CCAGCCTG 1 chr10:43911665-43911745 ( 7) CCAGCCTG 1 chr11:15671741-15671821 ( 36) CCAGCCTG 1 chr20:62496063-62496143 ( 18) CCAGCCTG 1 chr6:43670830-43670910 ( 52) CCAGCCTG 1 chr1:110473860-110473940 ( 22) CCAGCCTG 1 chr5:139078515-139078595 ( 17) CCAGCCTG 1 chr19:2095818-2095898 ( 35) CCTGCCTC 1 chr7:156741941-156742021 ( 58) CCTGCCTC 1 chr7:72992210-72992290 ( 2) CCTGCCTC 1 chrX:70331063-70331143 ( 5) CCTGCCTC 1 chr6:42848310-42848390 ( 50) CCTGCCTC 1 chr17:27054684-27054764 ( 63) CCTGCCTC 1 chr12:44152595-44152675 ( 2) TCAGCCTC 1 chr1:45452767-45452847 ( 50) TCAGCCTC 1 chr6:71275682-71275762 ( 15) TCAGCCTC 1 chr16:4358188-4358268 ( 14) TCAGCCTC 1 chr19:48759673-48759753 ( 29) TCAGCCTC 1 chr9:130504569-130504649 ( 62) TCAGCCTC 1 chr6:154832244-154832324 ( 54) TCAGCCTC 1 chr9:115303058-115303138 ( 53) TCAGCCTC 1 chr12:49245180-49245260 ( 44) CCAGCCTA 1 chr19:50093885-50093965 ( 67) CCAGCCCC 1 chr18:3654999-3655079 ( 52) CCAGCCCC 1 chr1:246350557-246350637 ( 1) CCAGCCTA 1 chr9:131013532-131013612 ( 62) CCAGCCCC 1 chr8:135725980-135726060 ( 44) CCAGCCCC 1 chr5:176433267-176433347 ( 36) CCAGCCCC 1 chr22:30615807-30615887 ( 72) CCACCCTC 1 chr5:139944759-139944839 ( 36) CCACCCTC 1 chr6:161735335-161735415 ( 24) TCTGCCTC 1 chr10:43893496-43893576 ( 63) TCTGCCTC 1 chr7:158652328-158652408 ( 73) CCAGGCTG 1 chr6:30875307-30875387 ( 32) CCAGGCTG 1 chr22:21239080-21239160 ( 25) CCAGGCTG 1 chr19:14638874-14638954 ( 29) CCAGGCTG 1 chr12:120107351-12010743 ( 72) CCAGGCTG 1 chr6:31832057-31832137 ( 2) CCAGGCTG 1 chr14:101143976-10114405 ( 44) TCTGCCTG 1 chr19:3324653-3324733 ( 40) CCTGCCCC 1 chr7:120679403-120679483 ( 63) CCTGCCCC 1 chr1:15670441-15670521 ( 13) CCTGCCTA 1 chr13:28024802-28024882 ( 61) CCTGGCTC 1 chr7:65216648-65216728 ( 36) CCTGGCTC 1 chr6:34760523-34760603 ( 36) CCTGCCCG 1 chr6:26205984-26206064 ( 33) CCTCCCTG 1 chr2:183581329-183581409 ( 31) CCTCCCTG 1 chr16:31105671-31105751 ( 67) TCAGCCCC 1 chr22:21354851-21354931 ( 39) TCAGCCTA 1 chr3:48673221-48673301 ( 36) CCAGCCTT 1 chr11:1884911-1884991 ( 51) CCTCCCTG 1 chr6:111195449-111195529 ( 44) CCTGGCTG 1 chr21:47877737-47877817 ( 42) TCACCCTC 1 chr8:74185606-74185686 ( 45) CCTGGCTG 1 chr7:30919135-30919215 ( 26) TCAGCCCG 1 chr10:73649129-73649209 ( 52) CCAGCCCA 1 chr1:203594136-203594216 ( 6) CCAGCCCA 1 chr2:38604902-38604982 ( 16) CCACCCCC 1 chr1:227585118-227585198 ( 65) CCACCCTA 1 chr1:156252100-156252180 ( 14) CCACCCTA 1 chr6:42748457-42748537 ( 60) CCAGGCTA 1 chr7:153105491-153105571 ( 43) CCTGCCTT 1 chr10:75692181-75692261 ( 37) TCTCCCTC 1 chr12:48167670-48167750 ( 68) TCTCCCTC 1 chr6:41041770-41041850 ( 41) TCTCCCTC 1 chr4:24421160-24421240 ( 1) TCAGCCTT 1 chr1:174129373-174129453 ( 32) CCTCCCCC 1 chr19:4328010-4328090 ( 14) CCTGGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCTS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.3564 E= 2.0e-017 -1287 159 -1287 2 -1287 201 -1287 -1287 135 -1287 -1287 47 -1287 -52 175 -1287 -1287 176 -62 -1287 -1287 201 -1287 -1287 -1287 -31 -1287 168 -110 95 55 -264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCTS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 2.0e-017 0.000000 0.746667 0.000000 0.253333 0.000000 1.000000 0.000000 0.000000 0.653333 0.000000 0.000000 0.346667 0.000000 0.173333 0.826667 0.000000 0.000000 0.840000 0.160000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.120000 0.480000 0.360000 0.040000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCTS MEME-1 regular expression -------------------------------------------------------------------------------- [CT]C[AT]GCC[TC][CG] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKTTTT MEME-2 width = 8 sites = 56 llr = 436 E-value = 3.3e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C :::2211: probability G ::14:1:: matrix T aa94879a bits 2.0 ** 1.8 ** * 1.6 ** * 1.4 *** ** Relative 1.2 *** * ** Entropy 1.0 *** * ** (11.2 bits) 0.8 *** * ** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:92685195-92685275 47 1.53e-05 TTAATTCACC TTTTTTTT CTTTGTATTT chr3:45769818-45769898 71 1.53e-05 gcttagttga tttttttt gg chr6:42186014-42186094 21 1.53e-05 attttttgtt tttttttt taattttctt chr4:87894841-87894921 67 1.53e-05 ttttcctttc tttttttt cttttc chr12:49716231-49716311 69 1.53e-05 tccctcttta tttttttt aaga chr1:173389651-173389731 33 1.53e-05 GTAAAGGCCT TTTTTTTT CCTGGCCAGT chr12:120107351-12010743 33 1.53e-05 TACTTAtttt tttttttt ccttctttga chr7:141437564-141437644 18 1.53e-05 tttctttctt tttttttt taattttctt chr19:860118-860198 67 1.53e-05 AACGGGAttc tttttttt ctttct chr1:32986564-32986644 5 1.53e-05 cAAG tttttttt tgtttttttg chr7:12729886-12729966 40 1.53e-05 tgtttttttg tttttttt ttttttCAGT chr1:230204975-230205055 34 1.53e-05 TCTTAGtttg tttttttt tgttttgttt chr6:42748457-42748537 30 3.03e-05 gttgttttgt tttgtttt tgttTgagtc chr7:149322482-149322562 27 3.03e-05 CGATCCTGTC TTTGTTTT AAAATTAACA chr6:27726104-27726184 64 3.03e-05 Gttttgtttg tttgtttt gacagagtc chr7:120679403-120679483 1 3.03e-05 . tttgtttt tgagcacttc chr17:47647064-47647144 20 3.03e-05 tttgttttgt tttgtttt tttgagacag chr7:100304033-100304113 68 3.03e-05 tatttttgtt tttgtttt tgttt chr12:57941502-57941582 67 3.03e-05 gtttttgttt tttgtttt tcaaat chr1:185126812-185126892 1 3.03e-05 . TTTGTTTT TATTTTTGCT chr17:73408817-73408897 14 3.03e-05 GGCTTCAGGC TTTGTTTT CTGTGAGTTA chr10:71074388-71074468 34 4.54e-05 tcttctctct tttctttt ctttcttttt chr1:181003407-181003487 73 4.54e-05 CATGGCCtcc tttctttt chr2:38604902-38604982 60 6.05e-05 CCTCTTGATC TTTTCTTT CCTCACCCAA chr22:21239080-21239160 11 7.54e-05 gagacagagt tttgcttt tgttgcccag chr6:126285960-126286040 8 9.06e-05 AGGATCA TTTTTCTT AAGATGAACC chr1:26963529-26963609 9 1.21e-04 ccagctaa ttttttct atttttagta chr1:207864995-207865075 10 1.21e-04 atatttcat tttttatt cttaaatcac chr7:153105491-153105571 29 1.21e-04 ttctttattc ttttttct ccttttcctg chr7:56142122-56142202 2 1.21e-04 C TTTTTTCT GACTCCGACC chr3:130097063-130097143 33 1.51e-04 cccctgtaac ttgttttt cccactatct chr4:115516557-115516637 13 1.97e-04 cTGAAACTGT TTTCCTTT CTGACTGACG chr4:54931563-54931643 6 1.97e-04 ATTCC TTTCCTTT TCTTACCAGT chr7:158652328-158652408 35 1.97e-04 ccagctaatt tttgtatt tttagcagag chr1:109102209-109102289 54 1.97e-04 AGCACATCAT TTTCCTTT TTCCTACCTT chr6:71275682-71275762 69 1.97e-04 ccggctaatt tttgtatt ttta chr16:4358188-4358268 68 1.97e-04 ctggctaatt tttgtatt tttag chr1:174937561-174937641 73 2.26e-04 AATTAGTGAC TTGGTTTT chr7:65216648-65216728 66 2.26e-04 GAAAAGTCCT TTTTTGTT Gtttgtt chr12:65003168-65003248 32 2.56e-04 GGATGGACAT TTTCTCTT TTCTAACGTC chr22:30615807-30615887 8 2.87e-04 ctctctc tttcttct ttctttcttc chr9:131013532-131013612 14 2.87e-04 TTCCTCCTCC TTTCTTCT TCTTGCTGTC chr1:52087700-52087780 40 3.02e-04 AATCAGGAGG TTGCTTTt gatgggattt chr15:40389294-40389374 28 3.17e-04 AGGAAGATGT TTTCTGTT GAAATAAGGA chr6:27441510-27441590 36 3.17e-04 taccttctat tttctgtt ctactctttt chr8:97284354-97284434 26 3.47e-04 GAGTTATAAA TTTTTTTC CCCCAAGTTT chr6:43739989-43740069 4 3.77e-04 TTA TTTTCATT TCTCTCTGCG chr19:14530644-14530724 49 4.22e-04 atgcaatagg ttgtcttt tgtgtctgac chr2:145282373-145282453 69 4.22e-04 AATTTCTTGT TTTGTTTC TTAA chr6:33285609-33285689 14 4.22e-04 ACTCGGCCAC TTTGCCTT TAAAGAAACA chr14:23356632-23356712 23 4.22e-04 ATGTGTCCAC TTTGCCTT TAAGGAGTTC chr6:13924694-13924774 43 4.52e-04 ACTTTATCAC TTTGCATT GCTCTTTCTC chr7:150102898-150102978 20 5.11e-04 AGTTACCGTA TTTGCGTT GAGCAGCGCA chr1:156662855-156662935 2 5.11e-04 C TTTTTCCT CAGGTGCGAC chr1:167195283-167195363 71 6.17e-04 ATCCATGTTC TTGTTTCT GA chr2:179315057-179315137 7 6.77e-04 ATGTTC TTGGTCTT CATGCCGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:92685195-92685275 1.5e-05 46_[+2]_26 chr3:45769818-45769898 1.5e-05 70_[+2]_2 chr6:42186014-42186094 1.5e-05 20_[+2]_52 chr4:87894841-87894921 1.5e-05 66_[+2]_6 chr12:49716231-49716311 1.5e-05 68_[+2]_4 chr1:173389651-173389731 1.5e-05 32_[+2]_40 chr12:120107351-12010743 1.5e-05 32_[+2]_40 chr7:141437564-141437644 1.5e-05 17_[+2]_55 chr19:860118-860198 1.5e-05 66_[+2]_6 chr1:32986564-32986644 1.5e-05 4_[+2]_68 chr7:12729886-12729966 1.5e-05 39_[+2]_33 chr1:230204975-230205055 1.5e-05 33_[+2]_39 chr6:42748457-42748537 3e-05 29_[+2]_43 chr7:149322482-149322562 3e-05 26_[+2]_46 chr6:27726104-27726184 3e-05 63_[+2]_9 chr7:120679403-120679483 3e-05 [+2]_72 chr17:47647064-47647144 3e-05 19_[+2]_53 chr7:100304033-100304113 3e-05 67_[+2]_5 chr12:57941502-57941582 3e-05 66_[+2]_6 chr1:185126812-185126892 3e-05 [+2]_72 chr17:73408817-73408897 3e-05 13_[+2]_59 chr10:71074388-71074468 4.5e-05 33_[+2]_39 chr1:181003407-181003487 4.5e-05 72_[+2] chr2:38604902-38604982 6.1e-05 59_[+2]_13 chr22:21239080-21239160 7.5e-05 10_[+2]_62 chr6:126285960-126286040 9.1e-05 7_[+2]_65 chr1:26963529-26963609 0.00012 8_[+2]_64 chr1:207864995-207865075 0.00012 9_[+2]_63 chr7:153105491-153105571 0.00012 28_[+2]_44 chr7:56142122-56142202 0.00012 1_[+2]_71 chr3:130097063-130097143 0.00015 32_[+2]_40 chr4:115516557-115516637 0.0002 12_[+2]_60 chr4:54931563-54931643 0.0002 5_[+2]_67 chr7:158652328-158652408 0.0002 34_[+2]_38 chr1:109102209-109102289 0.0002 53_[+2]_19 chr6:71275682-71275762 0.0002 68_[+2]_4 chr16:4358188-4358268 0.0002 67_[+2]_5 chr1:174937561-174937641 0.00023 72_[+2] chr7:65216648-65216728 0.00023 65_[+2]_7 chr12:65003168-65003248 0.00026 31_[+2]_41 chr22:30615807-30615887 0.00029 7_[+2]_65 chr9:131013532-131013612 0.00029 13_[+2]_59 chr1:52087700-52087780 0.0003 39_[+2]_33 chr15:40389294-40389374 0.00032 27_[+2]_45 chr6:27441510-27441590 0.00032 35_[+2]_37 chr8:97284354-97284434 0.00035 25_[+2]_47 chr6:43739989-43740069 0.00038 3_[+2]_69 chr19:14530644-14530724 0.00042 48_[+2]_24 chr2:145282373-145282453 0.00042 68_[+2]_4 chr6:33285609-33285689 0.00042 13_[+2]_59 chr14:23356632-23356712 0.00042 22_[+2]_50 chr6:13924694-13924774 0.00045 42_[+2]_30 chr7:150102898-150102978 0.00051 19_[+2]_53 chr1:156662855-156662935 0.00051 1_[+2]_71 chr1:167195283-167195363 0.00062 70_[+2]_2 chr2:179315057-179315137 0.00068 6_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKTTTT width=8 seqs=56 chr7:92685195-92685275 ( 47) TTTTTTTT 1 chr3:45769818-45769898 ( 71) TTTTTTTT 1 chr6:42186014-42186094 ( 21) TTTTTTTT 1 chr4:87894841-87894921 ( 67) TTTTTTTT 1 chr12:49716231-49716311 ( 69) TTTTTTTT 1 chr1:173389651-173389731 ( 33) TTTTTTTT 1 chr12:120107351-12010743 ( 33) TTTTTTTT 1 chr7:141437564-141437644 ( 18) TTTTTTTT 1 chr19:860118-860198 ( 67) TTTTTTTT 1 chr1:32986564-32986644 ( 5) TTTTTTTT 1 chr7:12729886-12729966 ( 40) TTTTTTTT 1 chr1:230204975-230205055 ( 34) TTTTTTTT 1 chr6:42748457-42748537 ( 30) TTTGTTTT 1 chr7:149322482-149322562 ( 27) TTTGTTTT 1 chr6:27726104-27726184 ( 64) TTTGTTTT 1 chr7:120679403-120679483 ( 1) TTTGTTTT 1 chr17:47647064-47647144 ( 20) TTTGTTTT 1 chr7:100304033-100304113 ( 68) TTTGTTTT 1 chr12:57941502-57941582 ( 67) TTTGTTTT 1 chr1:185126812-185126892 ( 1) TTTGTTTT 1 chr17:73408817-73408897 ( 14) TTTGTTTT 1 chr10:71074388-71074468 ( 34) TTTCTTTT 1 chr1:181003407-181003487 ( 73) TTTCTTTT 1 chr2:38604902-38604982 ( 60) TTTTCTTT 1 chr22:21239080-21239160 ( 11) TTTGCTTT 1 chr6:126285960-126286040 ( 8) TTTTTCTT 1 chr1:26963529-26963609 ( 9) TTTTTTCT 1 chr1:207864995-207865075 ( 10) TTTTTATT 1 chr7:153105491-153105571 ( 29) TTTTTTCT 1 chr7:56142122-56142202 ( 2) TTTTTTCT 1 chr3:130097063-130097143 ( 33) TTGTTTTT 1 chr4:115516557-115516637 ( 13) TTTCCTTT 1 chr4:54931563-54931643 ( 6) TTTCCTTT 1 chr7:158652328-158652408 ( 35) TTTGTATT 1 chr1:109102209-109102289 ( 54) TTTCCTTT 1 chr6:71275682-71275762 ( 69) TTTGTATT 1 chr16:4358188-4358268 ( 68) TTTGTATT 1 chr1:174937561-174937641 ( 73) TTGGTTTT 1 chr7:65216648-65216728 ( 66) TTTTTGTT 1 chr12:65003168-65003248 ( 32) TTTCTCTT 1 chr22:30615807-30615887 ( 8) TTTCTTCT 1 chr9:131013532-131013612 ( 14) TTTCTTCT 1 chr1:52087700-52087780 ( 40) TTGCTTTT 1 chr15:40389294-40389374 ( 28) TTTCTGTT 1 chr6:27441510-27441590 ( 36) TTTCTGTT 1 chr8:97284354-97284434 ( 26) TTTTTTTC 1 chr6:43739989-43740069 ( 4) TTTTCATT 1 chr19:14530644-14530724 ( 49) TTGTCTTT 1 chr2:145282373-145282453 ( 69) TTTGTTTC 1 chr6:33285609-33285689 ( 14) TTTGCCTT 1 chr14:23356632-23356712 ( 23) TTTGCCTT 1 chr6:13924694-13924774 ( 43) TTTGCATT 1 chr7:150102898-150102978 ( 20) TTTGCGTT 1 chr1:156662855-156662935 ( 2) TTTTTCCT 1 chr1:167195283-167195363 ( 71) TTGTTTCT 1 chr2:179315057-179315137 ( 7) TTGGTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 3.3e-010 -1245 -1245 -1245 200 -1245 -1245 -1245 200 -1245 -1245 -120 184 -1245 -34 54 84 -1245 -34 -1245 169 -126 -121 -178 152 -1245 -99 -1245 181 -1245 -279 -1245 195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 3.3e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.107143 0.892857 0.000000 0.196429 0.357143 0.446429 0.000000 0.196429 0.000000 0.803571 0.107143 0.107143 0.071429 0.714286 0.000000 0.125000 0.000000 0.875000 0.000000 0.035714 0.000000 0.964286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKTTTT MEME-2 regular expression -------------------------------------------------------------------------------- TTT[TG]TTTT -------------------------------------------------------------------------------- Time 8.81 secs. ******************************************************************************** ******************************************************************************** MOTIF AAARAAAA MEME-3 width = 8 sites = 30 llr = 274 E-value = 2.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAARAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a7a3aaa8 pos.-specific C :3:::::: probability G :::7:::2 matrix T :::::::: bits 2.0 * * *** 1.8 * * *** 1.6 * * *** 1.4 * * *** Relative 1.2 * * **** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAAAA consensus C A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:53615979-53616059 67 1.82e-05 aagaaagaag aaagaaaa aggaag chr16:3032598-3032678 49 1.82e-05 ggagagaaaa aaagaaaa gaaagaagaa chr21:45080440-45080520 11 1.82e-05 ctcaaaaaga aaagaaaa gaaaaaagga chr18:12702084-12702164 42 1.82e-05 ccgtctcaag aaagaaaa aaaaCCTGAT chr6:27807259-27807339 15 1.82e-05 aaagaaagaa aaagaaaa gaaaTTAATT chr11:59333027-59333107 46 1.82e-05 agaaaaggaa aaagaaaa aaaaggaaat chr1:246350557-246350637 44 1.82e-05 aaaaaaaaaa aaagaaaa gaaaagaaaG chr19:50231545-50231625 48 1.82e-05 agaaaagaaa aaagaaaa aaaGATTAAG chr22:20948463-20948543 54 1.82e-05 aagagaaaat aaagaaaa agaaagaaag chr20:3993052-3993132 15 5.48e-05 ccatctcaaa aaaaaaaa acaacaaaaC chr16:53980053-53980133 57 5.48e-05 atcagaaaac aaaaaaaa ataGTTGAAT chr22:19131702-19131782 61 5.48e-05 tcacacttta aCAGAAAA TCTTCTTTCC chr6:28721277-28721357 66 5.48e-05 cttcgtttaa aaaaaaaa aatcagg chr10:43911665-43911745 41 5.48e-05 ctctcaaaca aaaaaaaa aGCATTACTg chr10:74927443-74927523 72 5.48e-05 aacccagagt acagaaaa a chr13:28024802-28024882 9 5.48e-05 TTCCGCCG ACAGAAAA TGCGGAGAAC chr4:68410750-68410830 27 5.48e-05 aaacaaaaac aaaaaaaa aCCCAGCAGA chr15:43801990-43802070 40 5.48e-05 CAAACGGGAC AAAAAAAA ACCCAAAAAC chr6:31508557-31508637 40 5.48e-05 atataacaga acagaaaa agcagtacca chr1:38992269-38992349 38 5.48e-05 aaaattaaaa aaaaaaaa ttagttgggc chr19:41856929-41857009 53 7.23e-05 ACGGAGACGA AAAGAAAG AGGCAGATGG chr4:54931563-54931643 45 7.23e-05 AAAAGACCTG AAAGAAAG GGCAGAGGAG chr1:182324409-182324489 15 7.23e-05 agaaagaaag aaagaaag aaagaaagaa chr10:17009739-17009819 2 7.23e-05 c aaagaaag ggaaagataa chrX:70331063-70331143 14 7.23e-05 ccctgcctca aaagaaag aaagaaaCAA chr16:30570265-30570345 10 9.06e-05 taaaaacac acaaaaaa acagccaggt chr20:62496063-62496143 59 9.06e-05 tcaaaaacaa acaaaaaa ggaccaacta chr3:170074336-170074416 45 9.06e-05 AAACACACAC ACAAAAAA ACACCCTCAG chr1:12173605-12173685 66 1.26e-04 tgagagagag acagaaag agggaga chr12:97383887-97383967 12 1.26e-04 CCTTCTTTGC ACAGAAAG GCCACATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:53615979-53616059 1.8e-05 66_[+3]_6 chr16:3032598-3032678 1.8e-05 48_[+3]_24 chr21:45080440-45080520 1.8e-05 10_[+3]_62 chr18:12702084-12702164 1.8e-05 41_[+3]_31 chr6:27807259-27807339 1.8e-05 14_[+3]_58 chr11:59333027-59333107 1.8e-05 45_[+3]_27 chr1:246350557-246350637 1.8e-05 43_[+3]_29 chr19:50231545-50231625 1.8e-05 47_[+3]_25 chr22:20948463-20948543 1.8e-05 53_[+3]_19 chr20:3993052-3993132 5.5e-05 14_[+3]_58 chr16:53980053-53980133 5.5e-05 56_[+3]_16 chr22:19131702-19131782 5.5e-05 60_[+3]_12 chr6:28721277-28721357 5.5e-05 65_[+3]_7 chr10:43911665-43911745 5.5e-05 40_[+3]_32 chr10:74927443-74927523 5.5e-05 71_[+3]_1 chr13:28024802-28024882 5.5e-05 8_[+3]_64 chr4:68410750-68410830 5.5e-05 26_[+3]_46 chr15:43801990-43802070 5.5e-05 39_[+3]_33 chr6:31508557-31508637 5.5e-05 39_[+3]_33 chr1:38992269-38992349 5.5e-05 37_[+3]_35 chr19:41856929-41857009 7.2e-05 52_[+3]_20 chr4:54931563-54931643 7.2e-05 44_[+3]_28 chr1:182324409-182324489 7.2e-05 14_[+3]_58 chr10:17009739-17009819 7.2e-05 1_[+3]_71 chrX:70331063-70331143 7.2e-05 13_[+3]_59 chr16:30570265-30570345 9.1e-05 9_[+3]_63 chr20:62496063-62496143 9.1e-05 58_[+3]_14 chr3:170074336-170074416 9.1e-05 44_[+3]_28 chr1:12173605-12173685 0.00013 65_[+3]_7 chr12:97383887-97383967 0.00013 11_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAARAAAA width=8 seqs=30 chr12:53615979-53616059 ( 67) AAAGAAAA 1 chr16:3032598-3032678 ( 49) AAAGAAAA 1 chr21:45080440-45080520 ( 11) AAAGAAAA 1 chr18:12702084-12702164 ( 42) AAAGAAAA 1 chr6:27807259-27807339 ( 15) AAAGAAAA 1 chr11:59333027-59333107 ( 46) AAAGAAAA 1 chr1:246350557-246350637 ( 44) AAAGAAAA 1 chr19:50231545-50231625 ( 48) AAAGAAAA 1 chr22:20948463-20948543 ( 54) AAAGAAAA 1 chr20:3993052-3993132 ( 15) AAAAAAAA 1 chr16:53980053-53980133 ( 57) AAAAAAAA 1 chr22:19131702-19131782 ( 61) ACAGAAAA 1 chr6:28721277-28721357 ( 66) AAAAAAAA 1 chr10:43911665-43911745 ( 41) AAAAAAAA 1 chr10:74927443-74927523 ( 72) ACAGAAAA 1 chr13:28024802-28024882 ( 9) ACAGAAAA 1 chr4:68410750-68410830 ( 27) AAAAAAAA 1 chr15:43801990-43802070 ( 40) AAAAAAAA 1 chr6:31508557-31508637 ( 40) ACAGAAAA 1 chr1:38992269-38992349 ( 38) AAAAAAAA 1 chr19:41856929-41857009 ( 53) AAAGAAAG 1 chr4:54931563-54931643 ( 45) AAAGAAAG 1 chr1:182324409-182324489 ( 15) AAAGAAAG 1 chr10:17009739-17009819 ( 2) AAAGAAAG 1 chrX:70331063-70331143 ( 14) AAAGAAAG 1 chr16:30570265-30570345 ( 10) ACAAAAAA 1 chr20:62496063-62496143 ( 59) ACAAAAAA 1 chr3:170074336-170074416 ( 45) ACAAAAAA 1 chr1:12173605-12173685 ( 66) ACAGAAAG 1 chr12:97383887-97383967 ( 12) ACAGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 2.5e-008 196 -1155 -1155 -1155 145 28 -1155 -1155 196 -1155 -1155 -1155 38 -1155 144 -1155 196 -1155 -1155 -1155 196 -1155 -1155 -1155 196 -1155 -1155 -1155 158 -1155 -8 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.5e-008 1.000000 0.000000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.766667 0.000000 0.233333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAARAAAA MEME-3 regular expression -------------------------------------------------------------------------------- A[AC]A[GA]AAA[AG] -------------------------------------------------------------------------------- Time 12.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCACTG MEME-4 width = 8 sites = 14 llr = 146 E-value = 2.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCACTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C 1a:a:9:: probability G 9::::1:a matrix T ::a:::a: bits 2.0 **** ** 1.8 **** ** 1.6 ******* 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCACTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCACTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:12146813-12146893 58 1.48e-05 cgcgatctcg gctcactg caacctccgc chr7:156741941-156742021 19 1.48e-05 cgccatttcg gctcactg caacctccgc chr10:43893496-43893576 50 1.48e-05 catgatcttg gctcactg caacctctgc chr1:45452767-45452847 5 1.48e-05 ctcg gctcactg caagctcggc chr1:156252100-156252180 62 1.48e-05 CCCCAAGAAA GCTCACTG CAGAGGGGAT chr6:30875307-30875387 61 1.48e-05 catggtcctg gctcactg caactccgcc chr22:21239080-21239160 54 1.48e-05 tgcaatctca gctcactg caaccgctgc chr17:27054684-27054764 24 1.48e-05 cacgatctcg gctcactg caacctccgc chr9:130504569-130504649 17 1.48e-05 cgcgatccct gctcactg caacctccgc chr6:154832244-154832324 9 1.48e-05 cgatctca gctcactg cagcctctgc chr9:115303058-115303138 8 1.48e-05 aattatg gctcactg tagcctcgac chr10:74927443-74927523 42 2.98e-05 caggctaata cctcactg tacatatgag chr19:59055067-59055147 62 2.98e-05 cacaatcccg cctcactg ctgcctcggc chr1:174129373-174129453 63 4.45e-05 CCTTGTGAGT GCTCAGTG TCCTGATAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCACTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:12146813-12146893 1.5e-05 57_[+4]_15 chr7:156741941-156742021 1.5e-05 18_[+4]_54 chr10:43893496-43893576 1.5e-05 49_[+4]_23 chr1:45452767-45452847 1.5e-05 4_[+4]_68 chr1:156252100-156252180 1.5e-05 61_[+4]_11 chr6:30875307-30875387 1.5e-05 60_[+4]_12 chr22:21239080-21239160 1.5e-05 53_[+4]_19 chr17:27054684-27054764 1.5e-05 23_[+4]_49 chr9:130504569-130504649 1.5e-05 16_[+4]_56 chr6:154832244-154832324 1.5e-05 8_[+4]_64 chr9:115303058-115303138 1.5e-05 7_[+4]_65 chr10:74927443-74927523 3e-05 41_[+4]_31 chr19:59055067-59055147 3e-05 61_[+4]_11 chr1:174129373-174129453 4.4e-05 62_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCACTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCACTG width=8 seqs=14 chr11:12146813-12146893 ( 58) GCTCACTG 1 chr7:156741941-156742021 ( 19) GCTCACTG 1 chr10:43893496-43893576 ( 50) GCTCACTG 1 chr1:45452767-45452847 ( 5) GCTCACTG 1 chr1:156252100-156252180 ( 62) GCTCACTG 1 chr6:30875307-30875387 ( 61) GCTCACTG 1 chr22:21239080-21239160 ( 54) GCTCACTG 1 chr17:27054684-27054764 ( 24) GCTCACTG 1 chr9:130504569-130504649 ( 17) GCTCACTG 1 chr6:154832244-154832324 ( 9) GCTCACTG 1 chr9:115303058-115303138 ( 8) GCTCACTG 1 chr10:74927443-74927523 ( 42) CCTCACTG 1 chr19:59055067-59055147 ( 62) CCTCACTG 1 chr1:174129373-174129453 ( 63) GCTCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCACTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 2.8e-002 -1045 -79 180 -1045 -1045 201 -1045 -1045 -1045 -1045 -1045 200 -1045 201 -1045 -1045 196 -1045 -1045 -1045 -1045 190 -178 -1045 -1045 -1045 -1045 200 -1045 -1045 202 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCACTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.8e-002 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCACTG MEME-4 regular expression -------------------------------------------------------------------------------- GCTCACTG -------------------------------------------------------------------------------- Time 15.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGTAAT MEME-5 width = 8 sites = 18 llr = 172 E-value = 6.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGTAAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::3a7: pos.-specific C a9:::::: probability G :1:a::3: matrix T ::a:7::a bits 2.0 * ** * * 1.8 * ** * * 1.6 * ** * * 1.4 **** * * Relative 1.2 ******** Entropy 1.0 ******** (13.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTGTAAT consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGTAAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:30570265-30570345 41 1.56e-05 gtggcgtgca cctgtaat cccagctact chr22:22367309-22367389 72 1.56e-05 gtggctcacg cctgtaat c chr8:98787563-98787643 64 1.56e-05 gtggcaagcg cctgtaat cccagctac chr17:27138328-27138408 4 1.56e-05 gcg cctgtaat cccagctact chr2:219166188-219166268 61 1.56e-05 atggctcaca cctgtaat tctgcatttt chr1:22107783-22107863 23 1.56e-05 atggtgcatg cctgtaat cccagctatt chr1:38992269-38992349 69 1.56e-05 gtggtacacg cctgtaat ctat chr1:203594136-203594216 55 1.56e-05 ggggctcacg cctgtaat cccagcactt chr10:70716630-70716710 42 3.06e-05 gtggcgcgcg cctgtagt cccagctact chr6:17702589-17702669 24 3.06e-05 tggcaaggca cctgtagt cccagctact chr1:156475555-156475635 10 3.06e-05 tggcgcgcg cctgtagt cctagctact chr1:156897988-156898068 60 4.66e-05 accacctgga cctgaaat ccggctcatc chr1:227585118-227585198 45 4.66e-05 agttcatttt cctgaaat gctgcatgtg chr17:73408817-73408897 68 4.66e-05 TGGACATTGC CCTGAAAT TGACC chr1:165737729-165737809 64 6.20e-05 CCAGAGATTC CCTGAAGT GGAGTAGAT chr1:230204975-230205055 9 6.20e-05 CAGACACT CCTGAAGT GTGTGATTCT chr6:30875307-30875387 41 7.75e-05 cccaggctgg cgtgtaat ggcatggtcc chr2:179315057-179315137 26 7.75e-05 ATGCCGTATT CGTGTAAT ACCTGAATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGTAAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:30570265-30570345 1.6e-05 40_[+5]_32 chr22:22367309-22367389 1.6e-05 71_[+5]_1 chr8:98787563-98787643 1.6e-05 63_[+5]_9 chr17:27138328-27138408 1.6e-05 3_[+5]_69 chr2:219166188-219166268 1.6e-05 60_[+5]_12 chr1:22107783-22107863 1.6e-05 22_[+5]_50 chr1:38992269-38992349 1.6e-05 68_[+5]_4 chr1:203594136-203594216 1.6e-05 54_[+5]_18 chr10:70716630-70716710 3.1e-05 41_[+5]_31 chr6:17702589-17702669 3.1e-05 23_[+5]_49 chr1:156475555-156475635 3.1e-05 9_[+5]_63 chr1:156897988-156898068 4.7e-05 59_[+5]_13 chr1:227585118-227585198 4.7e-05 44_[+5]_28 chr17:73408817-73408897 4.7e-05 67_[+5]_5 chr1:165737729-165737809 6.2e-05 63_[+5]_9 chr1:230204975-230205055 6.2e-05 8_[+5]_64 chr6:30875307-30875387 7.7e-05 40_[+5]_32 chr2:179315057-179315137 7.7e-05 25_[+5]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGTAAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGTAAT width=8 seqs=18 chr16:30570265-30570345 ( 41) CCTGTAAT 1 chr22:22367309-22367389 ( 72) CCTGTAAT 1 chr8:98787563-98787643 ( 64) CCTGTAAT 1 chr17:27138328-27138408 ( 4) CCTGTAAT 1 chr2:219166188-219166268 ( 61) CCTGTAAT 1 chr1:22107783-22107863 ( 23) CCTGTAAT 1 chr1:38992269-38992349 ( 69) CCTGTAAT 1 chr1:203594136-203594216 ( 55) CCTGTAAT 1 chr10:70716630-70716710 ( 42) CCTGTAGT 1 chr6:17702589-17702669 ( 24) CCTGTAGT 1 chr1:156475555-156475635 ( 10) CCTGTAGT 1 chr1:156897988-156898068 ( 60) CCTGAAAT 1 chr1:227585118-227585198 ( 45) CCTGAAAT 1 chr17:73408817-73408897 ( 68) CCTGAAAT 1 chr1:165737729-165737809 ( 64) CCTGAAGT 1 chr1:230204975-230205055 ( 9) CCTGAAGT 1 chr6:30875307-30875387 ( 41) CGTGTAAT 1 chr2:179315057-179315137 ( 26) CGTGTAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGTAAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 6.4e+000 -1081 201 -1081 -1081 -1081 184 -115 -1081 -1081 -1081 -1081 200 -1081 -1081 202 -1081 11 -1081 -1081 153 196 -1081 -1081 -1081 149 -1081 18 -1081 -1081 -1081 -1081 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGTAAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.4e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.277778 0.000000 0.000000 0.722222 1.000000 0.000000 0.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGTAAT MEME-5 regular expression -------------------------------------------------------------------------------- CCTG[TA]A[AG]T -------------------------------------------------------------------------------- Time 19.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:203594136-203594216 6.13e-03 54_[+5(1.56e-05)]_18 chr5:139078515-139078595 1.24e-01 16_[+1(2.95e-05)]_56 chr1:15670441-15670521 3.76e-01 80 chr15:40729480-40729560 7.76e-01 80 chr17:652104-652184 9.71e-01 80 chr11:1884911-1884991 1.58e-01 80 chr17:45354305-45354385 2.00e-01 80 chr1:168254784-168254864 4.77e-01 80 chr17:73408817-73408897 1.14e-03 13_[+2(3.03e-05)]_46_[+5(4.66e-05)]_\ 5 chr7:30919135-30919215 3.41e-01 80 chr14:101143976-10114405 2.97e-02 80 chr8:74185606-74185686 8.76e-02 80 chr19:59055067-59055147 3.57e-03 61_[+4(2.98e-05)]_11 chr2:100098461-100098541 7.08e-01 80 chr12:97383887-97383967 6.49e-02 80 chr8:144751662-144751742 9.86e-01 80 chrX:68209782-68209862 6.18e-01 80 chr2:9331238-9331318 7.79e-01 80 chr3:42270382-42270462 3.58e-01 80 chr3:48673221-48673301 5.88e-02 80 chr1:167685450-167685530 4.72e-01 80 chr22:21354851-21354931 5.52e-01 80 chr19:17490340-17490420 5.80e-01 80 chr16:30670341-30670421 5.96e-01 80 chr7:56142122-56142202 7.40e-02 80 chr8:21773008-21773088 9.29e-01 80 chr7:112190681-112190761 5.73e-01 80 chr9:128004224-128004304 6.24e-01 80 chr1:230204975-230205055 2.56e-03 8_[+5(6.20e-05)]_17_[+2(1.53e-05)]_\ 3_[+2(3.03e-05)]_2_[+2(3.03e-05)]_1_[+2(1.53e-05)]_9 chr1:27985974-27986054 5.79e-01 80 chr1:185126812-185126892 4.11e-02 [+2(3.03e-05)]_4_[+2(7.54e-05)]_60 chr6:34759497-34759577 6.43e-01 80 chr17:75632034-75632114 7.87e-01 80 chr1:156662855-156662935 1.80e-01 80 chr9:115303058-115303138 3.84e-03 7_[+4(1.48e-05)]_37_[+1(7.32e-05)]_\ 20 chr16:88553068-88553148 8.24e-01 80 chr1:29483107-29483187 5.75e-01 80 chr3:170074336-170074416 1.77e-02 44_[+3(9.06e-05)]_28 chr11:68120282-68120362 4.22e-01 80 chr1:16571011-16571091 5.40e-01 80 chr6:154832244-154832324 5.69e-03 8_[+4(1.48e-05)]_37_[+1(7.32e-05)]_\ 19 chr22:41487393-41487473 2.40e-01 80 chr1:153918019-153918099 9.40e-01 80 chr1:38992269-38992349 3.50e-03 33_[+3(5.48e-05)]_27_[+5(1.56e-05)]_\ 4 chr21:47877737-47877817 3.27e-01 80 chr9:130504569-130504649 3.10e-03 16_[+4(1.48e-05)]_37_[+1(7.32e-05)]_\ 11 chr16:29314022-29314102 3.62e-01 80 chr7:99756851-99756931 6.92e-01 80 chr19:55988372-55988452 3.37e-01 80 chr22:20948463-20948543 2.10e-01 7_[+3(7.23e-05)]_4_[+3(1.82e-05)]_1_\ [+3(7.23e-05)]_17_[+3(1.82e-05)]_2_[+3(7.23e-05)]_9 chr5:68484753-68484833 7.57e-01 80 chr7:12729886-12729966 1.02e-01 9_[+2(3.03e-05)]_10_[+2(3.03e-05)]_\ 4_[+2(1.53e-05)]_33 chr3:58223389-58223469 9.99e-01 80 chr1:32986564-32986644 4.02e-02 4_[+2(1.53e-05)]_6_[+2(3.03e-05)]_\ 54 chr2:179315057-179315137 1.49e-02 25_[+5(7.75e-05)]_47 chr12:57941502-57941582 2.84e-02 59_[+2(3.03e-05)]_13 chr17:27054684-27054764 2.40e-03 23_[+4(1.48e-05)]_31_[+1(4.40e-05)]_\ 10 chr19:48759673-48759753 6.96e-02 28_[+1(7.32e-05)]_44 chr1:110473860-110473940 6.41e-02 21_[+1(2.95e-05)]_51 chr6:31832057-31832137 1.16e-01 80 chr1:181003407-181003487 2.87e-02 72_[+2(4.54e-05)] chr5:176433267-176433347 8.39e-02 80 chr14:23356632-23356712 1.18e-01 80 chr6:150038752-150038832 4.12e-01 80 chr7:75678792-75678872 1.00e+00 80 chr8:135725980-135726060 5.78e-02 80 chr1:22107783-22107863 7.27e-02 22_[+5(1.56e-05)]_50 chr6:31508557-31508637 3.47e-01 39_[+3(5.48e-05)]_33 chr7:153105491-153105571 5.13e-02 80 chr1:52607181-52607261 7.35e-01 80 chr19:860118-860198 3.39e-02 66_[+2(1.53e-05)]_6 chr7:65216648-65216728 1.42e-03 80 chr19:50231545-50231625 7.38e-02 35_[+3(1.82e-05)]_4_[+3(1.82e-05)]_\ 25 chr6:43670830-43670910 1.14e-01 51_[+1(2.95e-05)]_21 chr9:131013532-131013612 3.94e-02 80 chr6:111195449-111195529 1.73e-01 80 chr6:42848310-42848390 4.79e-02 49_[+1(4.40e-05)]_23 chr15:43801990-43802070 1.30e-02 39_[+3(5.48e-05)]_33 chr1:157245102-157245182 8.69e-01 80 chr7:141437564-141437644 1.71e-01 15_[+2(1.53e-05)]_17_[+2(4.54e-05)]_\ 6_[+2(3.03e-05)]_2_[+2(3.03e-05)]_8 chr1:174937561-174937641 1.45e-01 80 chr16:4358188-4358268 2.79e-02 13_[+1(7.32e-05)]_59 chr10:73649129-73649209 7.49e-02 80 chr19:45542837-45542917 4.84e-01 80 chr17:40730198-40730278 9.78e-03 80 chr12:120107351-12010743 3.51e-03 28_[+2(1.53e-05)]_44 chr4:68410750-68410830 2.33e-01 26_[+3(5.48e-05)]_46 chr1:181057313-181057393 5.20e-01 80 chr22:22200558-22200638 6.07e-01 80 chr19:14638874-14638954 8.23e-02 80 chr6:33285609-33285689 4.09e-02 80 chr3:33840844-33840924 3.35e-01 80 chr2:152267148-152267228 9.99e-01 80 chr11:440092-440172 6.22e-01 80 chr7:140097770-140097850 1.54e-01 80 chr2:65586654-65586734 1.32e-01 80 chr1:173389651-173389731 2.17e-02 31_[+2(1.53e-05)]_41 chr17:4871079-4871159 7.19e-01 80 chr2:145282373-145282453 1.99e-01 80 chr12:116989084-11698916 9.05e-01 80 chr5:139944759-139944839 1.28e-01 80 chr1:226310584-226310664 6.89e-01 80 chr1:167586961-167587041 5.41e-01 80 chr6:71275682-71275762 1.26e-02 14_[+1(7.32e-05)]_58 chr5:98263504-98263584 2.68e-01 80 chr16:31105671-31105751 4.26e-01 80 chr19:36135785-36135865 6.48e-01 80 chr1:246350557-246350637 8.80e-03 32_[+3(5.48e-05)]_3_[+3(1.82e-05)]_\ 2_[+3(7.23e-05)]_19 chrX:70331063-70331143 9.19e-03 4_[+1(4.40e-05)]_1_[+3(7.23e-05)]_\ 19_[+3(7.23e-05)]_32 chr1:43146753-43146833 2.05e-01 80 chr19:46405573-46405653 6.35e-01 80 chr2:219166188-219166268 1.01e-02 60_[+5(1.56e-05)]_12 chr22:21239080-21239160 1.52e-04 10_[+2(7.54e-05)]_35_[+4(1.48e-05)]_\ 19 chr7:100304033-100304113 3.92e-02 61_[+2(3.03e-05)]_11 chr11:61736557-61736637 8.96e-01 80 chr7:105753524-105753604 6.87e-01 80 chr6:30875307-30875387 9.81e-05 40_[+5(7.75e-05)]_12_[+4(1.48e-05)]_\ 12 chr17:47647064-47647144 2.26e-02 9_[+2(3.03e-05)]_2_[+2(3.03e-05)]_\ 53 chr12:49716231-49716311 8.15e-02 68_[+2(1.53e-05)]_4 chr7:100896022-100896102 9.15e-01 80 chr1:156252100-156252180 1.68e-03 61_[+4(1.48e-05)]_11 chr17:27138328-27138408 1.29e-01 3_[+5(1.56e-05)]_69 chr18:32869406-32869486 4.51e-01 80 chr7:142656461-142656541 5.93e-01 80 chr3:130097063-130097143 4.82e-03 80 chr12:56325397-56325477 9.75e-01 80 chr1:44502986-44503066 5.29e-01 80 chr11:59333027-59333107 1.89e-01 21_[+3(1.82e-05)]_4_[+3(1.82e-05)]_\ 4_[+3(1.82e-05)]_27 chr6:34760523-34760603 5.03e-01 80 chr13:28024802-28024882 3.00e-03 8_[+3(5.48e-05)]_64 chr17:28804009-28804089 7.56e-01 80 chr10:17009739-17009819 3.98e-01 1_[+3(7.23e-05)]_71 chr6:4021146-4021226 8.34e-01 80 chr20:62496063-62496143 8.34e-03 17_[+1(2.95e-05)]_33_[+3(9.06e-05)]_\ 14 chr6:27441510-27441590 3.03e-01 80 chr15:40389294-40389374 1.24e-01 80 chr6:13924694-13924774 3.49e-02 80 chr7:107201391-107201471 5.90e-01 80 chr19:4328010-4328090 3.23e-01 80 chr1:109102209-109102289 2.11e-01 80 chr6:30711186-30711266 6.35e-01 80 chr22:30615807-30615887 3.86e-02 80 chr10:74927443-74927523 1.27e-03 41_[+4(2.98e-05)]_22_[+3(5.48e-05)]_\ 1 chr8:98787563-98787643 3.96e-02 63_[+5(1.56e-05)]_9 chr1:207864995-207865075 2.07e-01 80 chr7:120679403-120679483 1.46e-02 [+2(3.03e-05)]_72 chr6:41041770-41041850 1.48e-01 80 chr2:62523696-62523776 9.99e-01 80 chr1:182324409-182324489 1.31e-01 2_[+3(7.23e-05)]_[+3(7.23e-05)]_\ [+3(7.23e-05)]_[+3(7.23e-05)]_46 chr8:97284354-97284434 3.97e-01 80 chr16:75300062-75300142 4.78e-01 80 chr12:48167670-48167750 2.48e-01 80 chr12:51476782-51476862 3.55e-01 80 chr16:30649417-30649497 7.07e-01 80 chr1:167195283-167195363 2.83e-02 80 chr7:72992210-72992290 7.68e-03 1_[+1(4.40e-05)]_46_[+4(5.93e-05)]_\ 17 chr6:27807259-27807339 6.12e-02 8_[+3(1.82e-05)]_64 chr6:41888401-41888481 9.67e-01 80 chr7:158652328-158652408 1.85e-02 80 chr19:4399475-4399555 9.42e-01 80 chr1:32577448-32577528 7.62e-01 80 chr11:15671741-15671821 3.55e-02 35_[+1(2.95e-05)]_37 chr5:43064743-43064823 3.33e-01 80 chr15:72523024-72523104 9.72e-01 80 chr1:45452767-45452847 1.09e-03 4_[+4(1.48e-05)]_37_[+1(7.32e-05)]_\ 23 chr10:43911665-43911745 4.06e-03 6_[+1(2.95e-05)]_25_[+3(5.48e-05)]_\ 33 chr2:179142605-179142685 3.14e-01 80 chr18:3654999-3655079 1.65e-01 80 chr1:25089073-25089153 7.62e-01 80 chr16:30597413-30597493 7.33e-01 80 chr4:87894841-87894921 1.52e-01 21_[+2(4.54e-05)]_2_[+2(4.54e-05)]_\ 27_[+2(1.53e-05)]_6 chr6:27726104-27726184 1.99e-01 63_[+2(3.03e-05)]_9 chr22:22367309-22367389 5.15e-03 71_[+5(1.56e-05)]_1 chr18:12702084-12702164 4.94e-04 8_[+1(2.95e-05)]_25_[+3(1.82e-05)]_\ 31 chr16:85644542-85644622 8.59e-01 80 chr2:27580267-27580347 5.68e-02 52_[+1(2.95e-05)]_20 chr1:12173605-12173685 4.92e-01 80 chr7:149322482-149322562 3.31e-02 26_[+2(3.03e-05)]_46 chr10:71074388-71074468 6.44e-02 9_[+2(4.54e-05)]_16_[+2(4.54e-05)]_\ 1_[+2(4.54e-05)]_30 chr6:43739989-43740069 2.43e-02 80 chr11:75528079-75528159 5.66e-01 80 chr2:74667335-74667415 6.77e-01 80 chr1:227585118-227585198 2.53e-02 44_[+5(4.66e-05)]_28 chr1:165737729-165737809 1.40e-01 63_[+5(6.20e-05)]_9 chr4:24421160-24421240 3.30e-01 80 chr19:14530644-14530724 2.04e-01 80 chr6:28721277-28721357 3.43e-03 31_[+1(2.95e-05)]_24_[+3(5.48e-05)]_\ 9 chr10:43893496-43893576 8.94e-04 49_[+4(1.48e-05)]_23 chr6:3163856-3163936 2.07e-01 80 chr22:19131702-19131782 3.93e-02 60_[+3(5.48e-05)]_12 chr12:44152595-44152675 9.53e-02 1_[+1(7.32e-05)]_71 chr7:150102898-150102978 1.81e-01 80 chr6:28235351-28235431 9.61e-01 80 chr19:50093885-50093965 1.83e-01 80 chr1:156475555-156475635 1.32e-01 9_[+5(3.06e-05)]_63 chr6:17702589-17702669 1.90e-01 23_[+5(3.06e-05)]_49 chr2:183581329-183581409 1.32e-02 80 chr19:7580627-7580707 8.93e-01 80 chr21:45080440-45080520 3.82e-02 5_[+3(1.82e-05)]_2_[+3(1.82e-05)]_6_\ [+3(1.82e-05)]_43 chr8:42529832-42529912 9.99e-01 80 chr10:75909970-75910050 5.02e-01 80 chr6:42186014-42186094 5.54e-02 18_[+2(1.53e-05)]_54 chr17:42219172-42219252 5.15e-01 80 chr9:124975541-124975621 2.50e-02 46_[+1(2.95e-05)]_26 chr6:30876261-30876341 1.31e-01 80 chr1:179850965-179851045 3.12e-01 80 chr7:156741941-156742021 2.79e-03 18_[+4(1.48e-05)]_31_[+1(4.40e-05)]_\ 15 chr12:65003168-65003248 2.23e-01 80 chr4:54931563-54931643 5.92e-03 30_[+3(9.06e-05)]_6_[+3(7.23e-05)]_\ 28 chr16:53980053-53980133 1.23e-01 25_[+3(5.48e-05)]_23_[+3(5.48e-05)]_\ 16 chr6:28301534-28301614 8.03e-01 80 chr1:154580168-154580248 9.04e-01 80 chr16:186430-186510 2.09e-01 58_[+1(2.95e-05)]_14 chr7:120677486-120677566 6.72e-01 80 chr19:41856929-41857009 3.20e-01 52_[+3(7.23e-05)]_20 chr1:110091713-110091793 6.99e-01 80 chr16:3032598-3032678 2.04e-01 3_[+3(7.23e-05)]_19_[+3(7.23e-05)]_\ 10_[+3(1.82e-05)]_24 chr7:150075709-150075789 8.65e-02 11_[+1(2.95e-05)]_61 chr21:34924284-34924364 8.75e-01 80 chr6:126285960-126286040 8.95e-02 7_[+2(9.06e-05)]_65 chr1:41158259-41158339 9.82e-01 80 chr10:75692181-75692261 4.52e-01 80 chr3:45769818-45769898 5.19e-02 70_[+2(1.53e-05)]_2 chr1:52087700-52087780 1.34e-01 80 chr19:39227387-39227467 1.75e-02 60_[+1(1.48e-05)]_12 chrX:122918477-122918557 2.18e-02 15_[+1(2.95e-05)]_57 chr1:1166456-1166536 4.70e-01 80 chr7:92685195-92685275 3.67e-03 46_[+2(1.53e-05)]_26 chr1:26963529-26963609 2.45e-01 80 chr6:42748457-42748537 2.51e-02 24_[+2(3.03e-05)]_48 chr17:74720788-74720868 9.05e-01 80 chr8:116660379-116660459 9.29e-01 80 chrX:48645307-48645387 4.05e-01 80 chr1:52868414-52868494 7.19e-01 80 chr1:156897988-156898068 1.07e-01 59_[+5(4.66e-05)]_13 chr1:174129373-174129453 3.14e-02 62_[+4(4.45e-05)]_10 chr11:12146813-12146893 3.35e-02 57_[+4(1.48e-05)]_15 chr10:70716630-70716710 6.47e-02 41_[+5(3.06e-05)]_31 chr19:3324653-3324733 1.76e-01 80 chr20:3993052-3993132 2.34e-02 11_[+3(5.48e-05)]_22_[+3(9.06e-05)]_\ 31 chr19:7935997-7936077 7.70e-01 80 chr9:47187609-47187689 9.07e-01 80 chr12:53615979-53616059 1.55e-01 17_[+3(5.48e-05)]_1_[+3(7.23e-05)]_\ 6_[+3(1.82e-05)]_7_[+3(7.23e-05)]_3_[+3(1.82e-05)]_6 chr6:161735335-161735415 2.80e-01 80 chr19:2095818-2095898 1.72e-01 34_[+1(4.40e-05)]_38 chr6:26205984-26206064 4.13e-02 80 chr12:49245180-49245260 2.60e-01 80 chr2:38604902-38604982 2.60e-02 59_[+2(6.05e-05)]_13 chr4:115516557-115516637 1.86e-02 80 chr16:30570265-30570345 7.65e-03 9_[+3(9.06e-05)]_23_[+5(1.56e-05)]_\ 32 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************