******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TRIM24.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:127093628-12709370 1.0000 80 chr16:32854295-32854375 1.0000 80 chr7:64968515-64968595 1.0000 80 chr11:12972373-12972453 1.0000 80 chr11:69506388-69506468 1.0000 80 chr7:33019004-33019084 1.0000 80 chr5:43336497-43336577 1.0000 80 chr7:64968786-64968866 1.0000 80 chr16:32817377-32817457 1.0000 80 chr1:182838535-182838615 1.0000 80 chr16:32293440-32293520 1.0000 80 chrX:48568048-48568128 1.0000 80 chr16:32131799-32131879 1.0000 80 chr7:65014674-65014754 1.0000 80 chr3:119878979-119879059 1.0000 80 chr12:121581757-12158183 1.0000 80 chr1:203895353-203895433 1.0000 80 chr16:49118669-49118749 1.0000 80 chr17:65808661-65808741 1.0000 80 chr18:29291519-29291599 1.0000 80 chr21:40635505-40635585 1.0000 80 chr7:134047804-134047884 1.0000 80 chr7:145478656-145478736 1.0000 80 chr8:16423333-16423413 1.0000 80 chr6:138715421-138715501 1.0000 80 chr8:6506607-6506687 1.0000 80 chr19:45793855-45793935 1.0000 80 chr2:188381524-188381604 1.0000 80 chr2:132792407-132792487 1.0000 80 chr7:144559795-144559875 1.0000 80 chr7:64606849-64606929 1.0000 80 chr16:90061653-90061733 1.0000 80 chr16:33577283-33577363 1.0000 80 chr10:65462998-65463078 1.0000 80 chr22:19668989-19669069 1.0000 80 chr16:90061431-90061511 1.0000 80 chr17:11876206-11876286 1.0000 80 chr8:580039-580119 1.0000 80 chr8:29913976-29914056 1.0000 80 chr21:30590242-30590322 1.0000 80 chr2:187304585-187304665 1.0000 80 chr1:148848022-148848102 1.0000 80 chr17:549326-549406 1.0000 80 chr14:93255960-93256040 1.0000 80 chr2:242559937-242560017 1.0000 80 chr1:12805375-12805455 1.0000 80 chr1:44395375-44395455 1.0000 80 chr1:91425300-91425380 1.0000 80 chr15:67374499-67374579 1.0000 80 chr7:65014882-65014962 1.0000 80 chr4:9850111-9850191 1.0000 80 chr1:202345548-202345628 1.0000 80 chr16:90062332-90062412 1.0000 80 chr2:205335039-205335119 1.0000 80 chr10:23801452-23801532 1.0000 80 chr3:28349851-28349931 1.0000 80 chr3:127729225-127729305 1.0000 80 chr6:142337963-142338043 1.0000 80 chr18:20160327-20160407 1.0000 80 chr1:91391680-91391760 1.0000 80 chr16:32657811-32657891 1.0000 80 chr12:32207235-32207315 1.0000 80 chr10:15745566-15745646 1.0000 80 chr3:72274128-72274208 1.0000 80 chr22:21259028-21259108 1.0000 80 chr9:110805994-110806074 1.0000 80 chr7:64606114-64606194 1.0000 80 chr5:145572334-145572414 1.0000 80 chr2:91639101-91639181 1.0000 80 chr1:115001080-115001160 1.0000 80 chr9:132093323-132093403 1.0000 80 chr2:108250332-108250412 1.0000 80 chr2:86922356-86922436 1.0000 80 chr2:90417273-90417353 1.0000 80 chr13:29113188-29113268 1.0000 80 chr12:46951883-46951963 1.0000 80 chr9:38171025-38171105 1.0000 80 chr16:10437125-10437205 1.0000 80 chr19:30444461-30444541 1.0000 80 chr2:101655190-101655270 1.0000 80 chr10:114206821-11420690 1.0000 80 chr17:25293747-25293827 1.0000 80 chr4:72978387-72978467 1.0000 80 chr19:29105858-29105938 1.0000 80 chr6:49836953-49837033 1.0000 80 chr5:158729379-158729459 1.0000 80 chr1:87271713-87271793 1.0000 80 chr20:1236477-1236557 1.0000 80 chr8:125959289-125959369 1.0000 80 chr2:224860445-224860525 1.0000 80 chr16:33820882-33820962 1.0000 80 chr11:93141124-93141204 1.0000 80 chrX:19003036-19003116 1.0000 80 chr6:35662377-35662457 1.0000 80 chr1:121142473-121142553 1.0000 80 chr4:38968999-38969079 1.0000 80 chr6:158531053-158531133 1.0000 80 chr11:4015455-4015535 1.0000 80 chr1:227784126-227784206 1.0000 80 chr5:68601468-68601548 1.0000 80 chr1:197908305-197908385 1.0000 80 chr17:75230039-75230119 1.0000 80 chr1:121142821-121142901 1.0000 80 chr18:29319119-29319199 1.0000 80 chr22:17050292-17050372 1.0000 80 chr13:114103628-11410370 1.0000 80 chr7:7082284-7082364 1.0000 80 chr17:72510907-72510987 1.0000 80 chr11:3538453-3538533 1.0000 80 chr12:62714018-62714098 1.0000 80 chr3:32115908-32115988 1.0000 80 chr17:48382196-48382276 1.0000 80 chr12:112422819-11242289 1.0000 80 chr7:138035623-138035703 1.0000 80 chr6:4382734-4382814 1.0000 80 chr6:38599284-38599364 1.0000 80 chr1:212661997-212662077 1.0000 80 chr2:68647541-68647621 1.0000 80 chr10:98829877-98829957 1.0000 80 chr21:21372262-21372342 1.0000 80 chr4:77720991-77721071 1.0000 80 chr12:76593683-76593763 1.0000 80 chrX:151065767-151065847 1.0000 80 chrX:124573434-124573514 1.0000 80 chr2:209794250-209794330 1.0000 80 chr17:72510280-72510360 1.0000 80 chr9:125209229-125209309 1.0000 80 chr7:138124156-138124236 1.0000 80 chr1:148850154-148850234 1.0000 80 chr10:76576934-76577014 1.0000 80 chr16:29285055-29285135 1.0000 80 chr10:75668999-75669079 1.0000 80 chr7:22687253-22687333 1.0000 80 chr15:67253764-67253844 1.0000 80 chr15:58708045-58708125 1.0000 80 chr1:31944517-31944597 1.0000 80 chr5:159066128-159066208 1.0000 80 chr1:15167000-15167080 1.0000 80 chr16:71860541-71860621 1.0000 80 chr3:195443026-195443106 1.0000 80 chr19:16985781-16985861 1.0000 80 chrX:114557044-114557124 1.0000 80 chr11:14358748-14358828 1.0000 80 chr3:132379034-132379114 1.0000 80 chr15:67799829-67799909 1.0000 80 chr7:153120108-153120188 1.0000 80 chr4:75397836-75397916 1.0000 80 chr2:172487798-172487878 1.0000 80 chr1:31584224-31584304 1.0000 80 chr2:201936576-201936656 1.0000 80 chr20:55685488-55685568 1.0000 80 chr5:150845190-150845270 1.0000 80 chr10:63425785-63425865 1.0000 80 chr16:32656961-32657041 1.0000 80 chr11:113535982-11353606 1.0000 80 chr2:200820331-200820411 1.0000 80 chr16:10595062-10595142 1.0000 80 chr3:14162499-14162579 1.0000 80 chr16:32656205-32656285 1.0000 80 chr12:25015336-25015416 1.0000 80 chrX:71792816-71792896 1.0000 80 chr14:88491103-88491183 1.0000 80 chr10:47619250-47619330 1.0000 80 chr7:5123123-5123203 1.0000 80 chr2:232651072-232651152 1.0000 80 chr6:25910668-25910748 1.0000 80 chr1:180092753-180092833 1.0000 80 chr14:103828304-10382838 1.0000 80 chr22:29571561-29571641 1.0000 80 chr20:61971573-61971653 1.0000 80 chr8:580983-581063 1.0000 80 chr2:46295081-46295161 1.0000 80 chr11:59735645-59735725 1.0000 80 chr4:71520424-71520504 1.0000 80 chr6:18090793-18090873 1.0000 80 chr16:10591144-10591224 1.0000 80 chr13:41345319-41345399 1.0000 80 chr16:9692121-9692201 1.0000 80 chr8:129014829-129014909 1.0000 80 chr2:48348138-48348218 1.0000 80 chr1:211395914-211395994 1.0000 80 chr19:12780332-12780412 1.0000 80 chr2:171319399-171319479 1.0000 80 chr5:5585914-5585994 1.0000 80 chr15:39432309-39432389 1.0000 80 chr10:17289373-17289453 1.0000 80 chr2:199078936-199079016 1.0000 80 chr12:117001223-11700130 1.0000 80 chr17:30511143-30511223 1.0000 80 chr7:135602560-135602640 1.0000 80 chr4:129607434-129607514 1.0000 80 chr8:145682193-145682273 1.0000 80 chr6:16338068-16338148 1.0000 80 chr3:5605515-5605595 1.0000 80 chr18:968412-968492 1.0000 80 chr2:86975320-86975400 1.0000 80 chr7:105987258-105987338 1.0000 80 chr4:95309260-95309340 1.0000 80 chr6:15698857-15698937 1.0000 80 chr10:95462378-95462458 1.0000 80 chr1:228386854-228386934 1.0000 80 chr6:138235816-138235896 1.0000 80 chr14:101228570-10122865 1.0000 80 chr16:32295973-32296053 1.0000 80 chr15:96103269-96103349 1.0000 80 chr1:91774267-91774347 1.0000 80 chr7:107852034-107852114 1.0000 80 chr17:19957039-19957119 1.0000 80 chr16:740418-740498 1.0000 80 chr5:56059877-56059957 1.0000 80 chr18:67872972-67873052 1.0000 80 chr17:72329128-72329208 1.0000 80 chr6:7701818-7701898 1.0000 80 chr10:74147059-74147139 1.0000 80 chr5:139990784-139990864 1.0000 80 chr3:138026933-138027013 1.0000 80 chr7:88518151-88518231 1.0000 80 chr9:101630121-101630201 1.0000 80 chr1:112142630-112142710 1.0000 80 chr20:33476450-33476530 1.0000 80 chr20:61970996-61971076 1.0000 80 chr2:72111627-72111707 1.0000 80 chr16:10579798-10579878 1.0000 80 chr5:180209052-180209132 1.0000 80 chr12:133405513-13340559 1.0000 80 chr11:43974076-43974156 1.0000 80 chr11:9632850-9632930 1.0000 80 chr6:163602254-163602334 1.0000 80 chr17:73077162-73077242 1.0000 80 chr14:24658133-24658213 1.0000 80 chr2:224822109-224822189 1.0000 80 chr2:12596659-12596739 1.0000 80 chr14:20645694-20645774 1.0000 80 chr8:121457434-121457514 1.0000 80 chr10:74397380-74397460 1.0000 80 chr4:8338323-8338403 1.0000 80 chr3:69192960-69193040 1.0000 80 chr11:59578260-59578340 1.0000 80 chr6:37941206-37941286 1.0000 80 chr10:45991362-45991442 1.0000 80 chr1:186164609-186164689 1.0000 80 chr7:128417914-128417994 1.0000 80 chr6:14301858-14301938 1.0000 80 chr13:50420846-50420926 1.0000 80 chr2:27233805-27233885 1.0000 80 chr6:47330758-47330838 1.0000 80 chr7:120800266-120800346 1.0000 80 chr8:129440529-129440609 1.0000 80 chr1:207020988-207021068 1.0000 80 chr14:34547486-34547566 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TRIM24/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TRIM24.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.218 G 0.226 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.275 C 0.218 G 0.226 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTKCATCA MEME-1 width = 8 sites = 71 llr = 670 E-value = 3.4e-077 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:a::a pos.-specific C :::a::a: probability G ::5::::: matrix T aa4::a:: bits 2.2 * 2.0 * * 1.8 ** ** ** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.6 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGCATCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:120800266-120800346 41 1.78e-05 tacatcacta ttgcatCA GAATAGTGTT chr11:9632850-9632930 60 1.78e-05 taccaccacc ttgcatca tgtatatttg chr20:61970996-61971076 8 1.78e-05 GAATGAA TTGCATCA TATCCACAAA chr9:101630121-101630201 41 1.78e-05 TTTCCTCCCA TTGCATCA TCCTTCCTCA chr7:88518151-88518231 47 1.78e-05 ttacaattga ttgcatca cccaggtagt chr8:145682193-145682273 51 1.78e-05 TGCAGGGGAA TTGCATCA TGGGGGGTGA chr7:135602560-135602640 35 1.78e-05 tgggaagcga ttgcatca tgtgggcagt chr2:199078936-199079016 17 1.78e-05 tgcctgatag ttgcatca tgttagttgc chr8:129014829-129014909 33 1.78e-05 tggcttgtca ttgcatca tccaagtctc chr14:103828304-10382838 53 1.78e-05 tagcaagaga ttgcatca tgctcctcag chr1:180092753-180092833 31 1.78e-05 TGCCGACCTG TTGCATCA TCACACCAAC chr16:32656205-32656285 17 1.78e-05 cattctttca ttgcatca tttcatcatt chr4:75397836-75397916 2 1.78e-05 C TTGCATCA GTCTACTAAA chr15:67799829-67799909 27 1.78e-05 TTGCAAAATA TTGCATCA TTTTAGAATA chrX:151065767-151065847 44 1.78e-05 cagtgaatga ttgcatca tcctcacagt chr4:77720991-77721071 42 1.78e-05 AACAAATGCA TTGCATCA TGAACAATGC chr2:68647541-68647621 52 1.78e-05 TTGCTTGTTA TTGCATCA TGCATACCCT chr6:38599284-38599364 25 1.78e-05 ttgctctctc ttgcatca cttgctctgg chr22:17050292-17050372 53 1.78e-05 gcccagtgtc ttgcatca tctttccaga chr2:224860445-224860525 28 1.78e-05 tcagaaaaaa ttgcatca gcaatagtta chr1:87271713-87271793 33 1.78e-05 cttccagtga ttgcatca gcatagtgga chr3:127729225-127729305 41 1.78e-05 ttcaggatca ttgcatca tgttggttgc chr2:205335039-205335119 50 1.78e-05 TTTCTCCCCC TTGCATCA TAAAACATGG chr4:9850111-9850191 12 1.78e-05 TTTCCAtgga ttgcatca tcatctttgc chr1:44395375-44395455 4 1.78e-05 AGA TTGCATCA GGCCAGGGAG chr10:65462998-65463078 33 1.78e-05 TGGGAATTGA TTGCATCA TCCTCACACC chr7:144559795-144559875 43 1.78e-05 tttcagaaca ttgcatca tgtcaaaaag chr7:145478656-145478736 31 1.78e-05 TTTCCATAAG TTGCATCA TCTAGCATCA chr7:134047804-134047884 38 1.78e-05 CTTCTATTTC TTGCATCA GCCCCTGGCT chr18:29291519-29291599 43 1.78e-05 TGCACAGAAA TTGCATCA TATACCATAC chr16:49118669-49118749 51 1.78e-05 ACCCATGTGC TTGCATCA TCTACCCATG chr11:12972373-12972453 42 1.78e-05 ttcatctgtg ttgcatca tgccgactta chr16:32854295-32854375 53 1.78e-05 cattatttca ttgcatca tttcatcatt chr2:27233805-27233885 30 3.99e-05 tgactcagag tttcatca tttcttattg chr10:74147059-74147139 46 3.99e-05 TACTAGAGTA TTTCATCA TCCTTTGCAG chr15:96103269-96103349 62 3.99e-05 tggcccaaga tttcatca cactactcag chr17:30511143-30511223 67 3.99e-05 tttcagaaca tttcatca ccccaa chr16:32656961-32657041 62 3.99e-05 cattctttca tttcatca ttgcatttca chr1:148850154-148850234 51 3.99e-05 catctcatca tttcatca tttcacttca chr12:76593683-76593763 45 3.99e-05 tttccatagc tttcatca gattctccct chr1:197908305-197908385 63 3.99e-05 tgctaggtga tttcatca ttgtgtgaac chr4:38968999-38969079 30 3.99e-05 TTTCCATGGG TTTCATCA TCTTTTTTTC chr8:125959289-125959369 68 3.99e-05 acagctgatt tttcatca gaaac chr3:72274128-72274208 60 3.99e-05 tgtctttggt tttcatca tttttaccat chr16:32657811-32657891 57 3.99e-05 catttcatca tttcatca tttcatttca chr3:28349851-28349931 38 3.99e-05 ttctagggga tttcatca ttttcttttc chr7:65014882-65014962 43 3.99e-05 catctcatca tttcatca attcatcatt chr1:12805375-12805455 28 3.99e-05 Ttgcagagga tttcatca tctggatgta chr1:148848022-148848102 60 3.99e-05 catccttcca tttcatca tttcatctta chr2:132792407-132792487 65 3.99e-05 catcatttca tttcatca ctccattt chr12:121581757-12158183 39 3.99e-05 tttcagaaca tttcatca gcccagtaag chr7:65014674-65014754 8 3.99e-05 ttcatca tttcatca tttgacttat chr16:32817377-32817457 59 3.99e-05 tctcatttca tttcatca tttcatttca chr7:64968786-64968866 52 3.99e-05 catttcatca tttcatca tttgacttat chr7:33019004-33019084 61 3.99e-05 TTTCAGCAGA TTTCATCA TTCCTTGGAT chr7:64968515-64968595 61 3.99e-05 catctcaaca tttcatca tttcacttca chr6:47330758-47330838 23 6.16e-05 tgcgaggctc ttacatca gctgtccacg chr3:69192960-69193040 55 6.16e-05 taccactctc ttacatca tgctcatggc chr17:73077162-73077242 29 6.16e-05 tgagcagaga ttacatca ctgcactcca chr2:46295081-46295161 23 6.16e-05 TGCACATTTT TTACATCA TACTCTCGTT chr20:61971573-61971653 68 6.16e-05 GATGAGTGAA TTACATCA TATCC chr2:209794250-209794330 7 6.16e-05 gcactg ttacatca gcacctttct chr17:48382196-48382276 58 6.16e-05 ttacataatg ttacatca tcttacatgc chr21:30590242-30590322 8 6.16e-05 CCTGGAA TTACATCA TATTGATGAC chr11:93141124-93141204 18 7.55e-05 ATTGTATGTA TTGCACCA TCCAACAGTG chr10:23801452-23801532 46 9.02e-05 tgatgaaatc ttgcgtca tcctgctcca chr6:138235816-138235896 51 1.30e-04 tttcaaggta ttgaatca tattgtcagt chr7:105987258-105987338 35 1.30e-04 agtcagggga tttcacca ataaatgtca chr1:202345548-202345628 59 1.30e-04 GTCATAGGTA TTGAATCA GCTGGAAGCA chr2:171319399-171319479 27 1.44e-04 AGTCTGATGG TTGCAGCA TCAGAGTCTG chr5:159066128-159066208 21 1.62e-04 tttctactta tttcgtca tccttaactg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:120800266-120800346 1.8e-05 40_[+1]_32 chr11:9632850-9632930 1.8e-05 59_[+1]_13 chr20:61970996-61971076 1.8e-05 7_[+1]_65 chr9:101630121-101630201 1.8e-05 40_[+1]_32 chr7:88518151-88518231 1.8e-05 46_[+1]_26 chr8:145682193-145682273 1.8e-05 50_[+1]_22 chr7:135602560-135602640 1.8e-05 34_[+1]_38 chr2:199078936-199079016 1.8e-05 16_[+1]_56 chr8:129014829-129014909 1.8e-05 32_[+1]_40 chr14:103828304-10382838 1.8e-05 52_[+1]_20 chr1:180092753-180092833 1.8e-05 30_[+1]_42 chr16:32656205-32656285 1.8e-05 16_[+1]_56 chr4:75397836-75397916 1.8e-05 1_[+1]_71 chr15:67799829-67799909 1.8e-05 26_[+1]_46 chrX:151065767-151065847 1.8e-05 43_[+1]_29 chr4:77720991-77721071 1.8e-05 41_[+1]_31 chr2:68647541-68647621 1.8e-05 51_[+1]_21 chr6:38599284-38599364 1.8e-05 24_[+1]_48 chr22:17050292-17050372 1.8e-05 52_[+1]_20 chr2:224860445-224860525 1.8e-05 27_[+1]_45 chr1:87271713-87271793 1.8e-05 32_[+1]_40 chr3:127729225-127729305 1.8e-05 40_[+1]_32 chr2:205335039-205335119 1.8e-05 49_[+1]_23 chr4:9850111-9850191 1.8e-05 11_[+1]_61 chr1:44395375-44395455 1.8e-05 3_[+1]_69 chr10:65462998-65463078 1.8e-05 32_[+1]_40 chr7:144559795-144559875 1.8e-05 42_[+1]_30 chr7:145478656-145478736 1.8e-05 30_[+1]_42 chr7:134047804-134047884 1.8e-05 37_[+1]_35 chr18:29291519-29291599 1.8e-05 42_[+1]_30 chr16:49118669-49118749 1.8e-05 50_[+1]_22 chr11:12972373-12972453 1.8e-05 41_[+1]_31 chr16:32854295-32854375 1.8e-05 52_[+1]_20 chr2:27233805-27233885 4e-05 29_[+1]_43 chr10:74147059-74147139 4e-05 45_[+1]_27 chr15:96103269-96103349 4e-05 61_[+1]_11 chr17:30511143-30511223 4e-05 66_[+1]_6 chr16:32656961-32657041 4e-05 61_[+1]_11 chr1:148850154-148850234 4e-05 50_[+1]_22 chr12:76593683-76593763 4e-05 44_[+1]_28 chr1:197908305-197908385 4e-05 62_[+1]_10 chr4:38968999-38969079 4e-05 29_[+1]_43 chr8:125959289-125959369 4e-05 67_[+1]_5 chr3:72274128-72274208 4e-05 59_[+1]_13 chr16:32657811-32657891 4e-05 56_[+1]_16 chr3:28349851-28349931 4e-05 37_[+1]_35 chr7:65014882-65014962 4e-05 42_[+1]_30 chr1:12805375-12805455 4e-05 27_[+1]_45 chr1:148848022-148848102 4e-05 59_[+1]_13 chr2:132792407-132792487 4e-05 64_[+1]_8 chr12:121581757-12158183 4e-05 38_[+1]_34 chr7:65014674-65014754 4e-05 7_[+1]_65 chr16:32817377-32817457 4e-05 58_[+1]_14 chr7:64968786-64968866 4e-05 51_[+1]_21 chr7:33019004-33019084 4e-05 60_[+1]_12 chr7:64968515-64968595 4e-05 60_[+1]_12 chr6:47330758-47330838 6.2e-05 22_[+1]_50 chr3:69192960-69193040 6.2e-05 54_[+1]_18 chr17:73077162-73077242 6.2e-05 28_[+1]_44 chr2:46295081-46295161 6.2e-05 22_[+1]_50 chr20:61971573-61971653 6.2e-05 67_[+1]_5 chr2:209794250-209794330 6.2e-05 6_[+1]_66 chr17:48382196-48382276 6.2e-05 57_[+1]_15 chr21:30590242-30590322 6.2e-05 7_[+1]_65 chr11:93141124-93141204 7.5e-05 17_[+1]_55 chr10:23801452-23801532 9e-05 45_[+1]_27 chr6:138235816-138235896 0.00013 50_[+1]_22 chr7:105987258-105987338 0.00013 34_[+1]_38 chr1:202345548-202345628 0.00013 58_[+1]_14 chr2:171319399-171319479 0.00014 26_[+1]_46 chr5:159066128-159066208 0.00016 20_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCATCA width=8 seqs=71 chr7:120800266-120800346 ( 41) TTGCATCA 1 chr11:9632850-9632930 ( 60) TTGCATCA 1 chr20:61970996-61971076 ( 8) TTGCATCA 1 chr9:101630121-101630201 ( 41) TTGCATCA 1 chr7:88518151-88518231 ( 47) TTGCATCA 1 chr8:145682193-145682273 ( 51) TTGCATCA 1 chr7:135602560-135602640 ( 35) TTGCATCA 1 chr2:199078936-199079016 ( 17) TTGCATCA 1 chr8:129014829-129014909 ( 33) TTGCATCA 1 chr14:103828304-10382838 ( 53) TTGCATCA 1 chr1:180092753-180092833 ( 31) TTGCATCA 1 chr16:32656205-32656285 ( 17) TTGCATCA 1 chr4:75397836-75397916 ( 2) TTGCATCA 1 chr15:67799829-67799909 ( 27) TTGCATCA 1 chrX:151065767-151065847 ( 44) TTGCATCA 1 chr4:77720991-77721071 ( 42) TTGCATCA 1 chr2:68647541-68647621 ( 52) TTGCATCA 1 chr6:38599284-38599364 ( 25) TTGCATCA 1 chr22:17050292-17050372 ( 53) TTGCATCA 1 chr2:224860445-224860525 ( 28) TTGCATCA 1 chr1:87271713-87271793 ( 33) TTGCATCA 1 chr3:127729225-127729305 ( 41) TTGCATCA 1 chr2:205335039-205335119 ( 50) TTGCATCA 1 chr4:9850111-9850191 ( 12) TTGCATCA 1 chr1:44395375-44395455 ( 4) TTGCATCA 1 chr10:65462998-65463078 ( 33) TTGCATCA 1 chr7:144559795-144559875 ( 43) TTGCATCA 1 chr7:145478656-145478736 ( 31) TTGCATCA 1 chr7:134047804-134047884 ( 38) TTGCATCA 1 chr18:29291519-29291599 ( 43) TTGCATCA 1 chr16:49118669-49118749 ( 51) TTGCATCA 1 chr11:12972373-12972453 ( 42) TTGCATCA 1 chr16:32854295-32854375 ( 53) TTGCATCA 1 chr2:27233805-27233885 ( 30) TTTCATCA 1 chr10:74147059-74147139 ( 46) TTTCATCA 1 chr15:96103269-96103349 ( 62) TTTCATCA 1 chr17:30511143-30511223 ( 67) TTTCATCA 1 chr16:32656961-32657041 ( 62) TTTCATCA 1 chr1:148850154-148850234 ( 51) TTTCATCA 1 chr12:76593683-76593763 ( 45) TTTCATCA 1 chr1:197908305-197908385 ( 63) TTTCATCA 1 chr4:38968999-38969079 ( 30) TTTCATCA 1 chr8:125959289-125959369 ( 68) TTTCATCA 1 chr3:72274128-72274208 ( 60) TTTCATCA 1 chr16:32657811-32657891 ( 57) TTTCATCA 1 chr3:28349851-28349931 ( 38) TTTCATCA 1 chr7:65014882-65014962 ( 43) TTTCATCA 1 chr1:12805375-12805455 ( 28) TTTCATCA 1 chr1:148848022-148848102 ( 60) TTTCATCA 1 chr2:132792407-132792487 ( 65) TTTCATCA 1 chr12:121581757-12158183 ( 39) TTTCATCA 1 chr7:65014674-65014754 ( 8) TTTCATCA 1 chr16:32817377-32817457 ( 59) TTTCATCA 1 chr7:64968786-64968866 ( 52) TTTCATCA 1 chr7:33019004-33019084 ( 61) TTTCATCA 1 chr7:64968515-64968595 ( 61) TTTCATCA 1 chr6:47330758-47330838 ( 23) TTACATCA 1 chr3:69192960-69193040 ( 55) TTACATCA 1 chr17:73077162-73077242 ( 29) TTACATCA 1 chr2:46295081-46295161 ( 23) TTACATCA 1 chr20:61971573-61971653 ( 68) TTACATCA 1 chr2:209794250-209794330 ( 7) TTACATCA 1 chr17:48382196-48382276 ( 58) TTACATCA 1 chr21:30590242-30590322 ( 8) TTACATCA 1 chr11:93141124-93141204 ( 18) TTGCACCA 1 chr10:23801452-23801532 ( 46) TTGCGTCA 1 chr6:138235816-138235896 ( 51) TTGAATCA 1 chr7:105987258-105987338 ( 35) TTTCACCA 1 chr1:202345548-202345628 ( 59) TTGAATCA 1 chr2:171319399-171319479 ( 27) TTGCAGCA 1 chr5:159066128-159066208 ( 21) TTTCGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.83776 E= 3.4e-077 -1279 -1279 -1279 184 -1279 -1279 -1279 184 -129 -1279 124 33 -329 215 -1279 -1279 182 -1279 -300 -1279 -1279 -295 -400 178 -1279 219 -1279 -1279 186 -1279 -1279 -1279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 3.4e-077 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.112676 0.000000 0.535211 0.352113 0.028169 0.971831 0.000000 0.000000 0.971831 0.000000 0.028169 0.000000 0.000000 0.028169 0.014085 0.957746 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 regular expression -------------------------------------------------------------------------------- TT[GT]CATCA -------------------------------------------------------------------------------- Time 4.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATGCAA MEME-2 width = 8 sites = 65 llr = 611 E-value = 3.2e-065 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATGCAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::9::3aa pos.-specific C :::::7:: probability G :a::a::: matrix T a::a:::: bits 2.2 * 2.0 * 1.8 ** ** ** 1.5 ** ** ** Relative 1.3 ***** ** Entropy 1.1 ******** (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGATGCAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGCAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:129440529-129440609 14 1.82e-05 TCTGATTTTC TGATGCAA GAAGCTGCAA chr6:37941206-37941286 29 1.82e-05 Tagcactgtc tgatgcaa ctttttgtaa chr6:163602254-163602334 47 1.82e-05 AAAGAATACG TGATGCAA CCTCCTGAAA chr3:138026933-138027013 46 1.82e-05 AAAGAGGAGA TGATGCAA CAGGGGAGCA chr17:19957039-19957119 27 1.82e-05 agccttcaga tgatgcaa ccccagctga chr14:101228570-10122865 18 1.82e-05 acatactgta tgatgcaa tgtgtatgaa chr2:86975320-86975400 5 1.82e-05 GCTC TGATGCAA CAGTGAGTAA chr3:5605515-5605595 24 1.82e-05 GCTGGAGATC TGATGCAA TACCCCTGAA chr6:16338068-16338148 19 1.82e-05 TTTCAAGGAC TGATGCAA GAAGATGAAA chr5:5585914-5585994 45 1.82e-05 TGCAAGATTC TGATGCAA TAATCTTGCA chr6:25910668-25910748 32 1.82e-05 CCGTGGCAAC TGATGCAA TTGGAAGCAA chr4:75397836-75397916 32 1.82e-05 GAAGCAATGT TGATGCAA CGACCCACTC chr7:153120108-153120188 45 1.82e-05 AAATATGTAC TGATGCAA TCAGGGAAAC chr15:58708045-58708125 18 1.82e-05 cacttgtgga tgatgcaa tgtctactgc chr2:209794250-209794330 68 1.82e-05 catgagcagc tgatgcaa gagga chr10:98829877-98829957 34 1.82e-05 cccaacattg tgatgcaa tctcatgaaa chr6:4382734-4382814 24 1.82e-05 CAGGTTCGAA TGATGCAA TGGGAGTGAC chr11:93141124-93141204 40 1.82e-05 ACAGTGGGGA TGATGCAA TACATACATC chr16:33820882-33820962 11 1.82e-05 aatgatgaaa tgatgcaa tgaaatgatg chr2:101655190-101655270 43 1.82e-05 AGAAAGGAGA TGATGCAA TGGCGAGAAA chr19:30444461-30444541 24 1.82e-05 tcttgaaaga tgatgcaa tatcctaggc chr12:46951883-46951963 44 1.82e-05 gccagggaga tgatgcaa tactgggaaa chr9:132093323-132093403 29 1.82e-05 tcagagtgag tgatgcaa gagagtgaga chr5:145572334-145572414 55 1.82e-05 taaaccagga tgatgcaa tagagagtaa chr10:15745566-15745646 40 1.82e-05 CCCCCAAGTA TGATGCAA CAGTGTGACA chr18:20160327-20160407 59 1.82e-05 tcatgaatga tgatgcaa ccaacattga chr8:29913976-29914056 20 1.82e-05 aataaagatg tgatgcaa tggcatgcaa chr22:19668989-19669069 12 1.82e-05 gttctcagta tgatgcaa cggactgaaa chr7:64606849-64606929 60 1.82e-05 tgagatgaaa tgatgcaa taaaatgatg chr6:138715421-138715501 18 1.82e-05 ccagatgcaa tgatgcaa tgatcttgta chr8:16423333-16423413 24 1.82e-05 atttgaaaga tgatgcaa cactgtgaaa chr21:40635505-40635585 56 1.82e-05 atgatacata tgatgcaa tgacagaaca chr17:65808661-65808741 12 1.82e-05 tggggtacgg tgatgcaa tcatagctca chr3:119878979-119879059 15 1.82e-05 TCCAGGATGC TGATGCAA TGACTGAGCA chr11:69506388-69506468 48 1.82e-05 caatagctgc tgatgcaa cctgctgcaa chr10:127093628-12709370 38 1.82e-05 catggtgaca tgatgcaa catcatggtg chr16:32295973-32296053 17 4.11e-05 ataaatgaaa tgatgaaa tgaaatgata chr11:14358748-14358828 18 4.11e-05 ctgagtagcc tgatgaaa tctcacacca chr12:112422819-11242289 4 4.11e-05 caa tgatgaaa gacAAAGTCA chr1:121142821-121142901 4 4.11e-05 aga tgatgaaa tgatgagatg chr6:158531053-158531133 14 4.11e-05 cttttgggga tgatgaaa tagcctgaaa chr1:121142473-121142553 1 4.11e-05 . tgatgaaa tggaatgatg chr17:25293747-25293827 32 4.11e-05 tgatatgaaa tgatgaaa agaaatgatg chr2:90417273-90417353 38 4.11e-05 tgaaatgaaa tgatgaaa tgatatgaaa chr2:91639101-91639181 13 4.11e-05 aatgatgaaa tgatgaaa tggaatgatg chr7:64606114-64606194 22 4.11e-05 tgaaatgaat tgatgaaa taatgaaatg chr10:23801452-23801532 36 4.11e-05 ctgagtaaca tgatgaaa tcttgcgtca chr1:91425300-91425380 21 4.11e-05 ttttatgggg tgatgaaa cactttagaa chr16:33577283-33577363 43 4.11e-05 tgaaatgaat tgatgaaa tgatgaaatg chr1:203895353-203895433 26 4.11e-05 TATCTGAGAA TGATGAAA CTTTGAGCAA chr16:32131799-32131879 38 4.11e-05 tgaaatgaaa tgatgaaa tgagatgaaa chr16:32293440-32293520 4 4.11e-05 aaa tgatgaaa tggaatgatg chr5:43336497-43336577 21 4.11e-05 ggaaaaatga tgatgaaa tgagacagga chr11:59735645-59735725 51 5.60e-05 CATGGTTACA TGGTGCAA TTGTGGTCCA chr2:48348138-48348218 43 7.45e-05 aaataaaccc tgttgcaa gccattgtgg chr22:21259028-21259108 52 7.45e-05 GTCACTCTGG TGTTGCAA GTATAGACGG chr17:30511143-30511223 32 9.70e-05 attcacaaag ttatgcaa tcatcaccac chr16:9692121-9692201 36 9.70e-05 CAGTGACGGC TTATGCAA CAAAGGCCAT chr6:15698857-15698937 62 1.16e-04 cattggtatc tggtgaaa gccttaggtt chr3:195443026-195443106 9 1.16e-04 ggccaaca tggtgaaa ccctgttgac chr7:134047804-134047884 55 1.30e-04 AGCCCCTGGC TGACGCAA TACTGTTTGC chr14:34547486-34547566 22 1.68e-04 cttcacagca ggatgcaa aagagagata chr1:202345548-202345628 12 1.68e-04 GTGCCTTGGA TGTTGAAA GTTCTTGCAA chr6:38599284-38599364 73 2.09e-04 ataaggatac tcatgcaa chr9:110805994-110806074 32 2.09e-04 cttaatgaaa tgatgtaa tgcagttatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGCAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:129440529-129440609 1.8e-05 13_[+2]_59 chr6:37941206-37941286 1.8e-05 28_[+2]_44 chr6:163602254-163602334 1.8e-05 46_[+2]_26 chr3:138026933-138027013 1.8e-05 45_[+2]_27 chr17:19957039-19957119 1.8e-05 26_[+2]_46 chr14:101228570-10122865 1.8e-05 17_[+2]_55 chr2:86975320-86975400 1.8e-05 4_[+2]_68 chr3:5605515-5605595 1.8e-05 23_[+2]_49 chr6:16338068-16338148 1.8e-05 18_[+2]_54 chr5:5585914-5585994 1.8e-05 44_[+2]_28 chr6:25910668-25910748 1.8e-05 31_[+2]_41 chr4:75397836-75397916 1.8e-05 31_[+2]_41 chr7:153120108-153120188 1.8e-05 44_[+2]_28 chr15:58708045-58708125 1.8e-05 17_[+2]_55 chr2:209794250-209794330 1.8e-05 67_[+2]_5 chr10:98829877-98829957 1.8e-05 33_[+2]_39 chr6:4382734-4382814 1.8e-05 23_[+2]_49 chr11:93141124-93141204 1.8e-05 39_[+2]_33 chr16:33820882-33820962 1.8e-05 10_[+2]_62 chr2:101655190-101655270 1.8e-05 42_[+2]_30 chr19:30444461-30444541 1.8e-05 23_[+2]_49 chr12:46951883-46951963 1.8e-05 43_[+2]_29 chr9:132093323-132093403 1.8e-05 28_[+2]_44 chr5:145572334-145572414 1.8e-05 54_[+2]_18 chr10:15745566-15745646 1.8e-05 39_[+2]_33 chr18:20160327-20160407 1.8e-05 58_[+2]_14 chr8:29913976-29914056 1.8e-05 19_[+2]_53 chr22:19668989-19669069 1.8e-05 11_[+2]_61 chr7:64606849-64606929 1.8e-05 59_[+2]_13 chr6:138715421-138715501 1.8e-05 17_[+2]_55 chr8:16423333-16423413 1.8e-05 23_[+2]_49 chr21:40635505-40635585 1.8e-05 55_[+2]_17 chr17:65808661-65808741 1.8e-05 11_[+2]_61 chr3:119878979-119879059 1.8e-05 14_[+2]_58 chr11:69506388-69506468 1.8e-05 47_[+2]_25 chr10:127093628-12709370 1.8e-05 37_[+2]_35 chr16:32295973-32296053 4.1e-05 16_[+2]_56 chr11:14358748-14358828 4.1e-05 17_[+2]_55 chr12:112422819-11242289 4.1e-05 3_[+2]_69 chr1:121142821-121142901 4.1e-05 3_[+2]_69 chr6:158531053-158531133 4.1e-05 13_[+2]_59 chr1:121142473-121142553 4.1e-05 [+2]_72 chr17:25293747-25293827 4.1e-05 31_[+2]_41 chr2:90417273-90417353 4.1e-05 37_[+2]_35 chr2:91639101-91639181 4.1e-05 12_[+2]_60 chr7:64606114-64606194 4.1e-05 21_[+2]_51 chr10:23801452-23801532 4.1e-05 35_[+2]_37 chr1:91425300-91425380 4.1e-05 20_[+2]_52 chr16:33577283-33577363 4.1e-05 42_[+2]_30 chr1:203895353-203895433 4.1e-05 25_[+2]_47 chr16:32131799-32131879 4.1e-05 37_[+2]_35 chr16:32293440-32293520 4.1e-05 3_[+2]_69 chr5:43336497-43336577 4.1e-05 20_[+2]_52 chr11:59735645-59735725 5.6e-05 50_[+2]_22 chr2:48348138-48348218 7.4e-05 42_[+2]_30 chr22:21259028-21259108 7.4e-05 51_[+2]_21 chr17:30511143-30511223 9.7e-05 31_[+2]_41 chr16:9692121-9692201 9.7e-05 35_[+2]_37 chr6:15698857-15698937 0.00012 61_[+2]_11 chr3:195443026-195443106 0.00012 8_[+2]_64 chr7:134047804-134047884 0.00013 54_[+2]_18 chr14:34547486-34547566 0.00017 21_[+2]_51 chr1:202345548-202345628 0.00017 11_[+2]_61 chr6:38599284-38599364 0.00021 72_[+2] chr9:110805994-110806074 0.00021 31_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGCAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATGCAA width=8 seqs=65 chr8:129440529-129440609 ( 14) TGATGCAA 1 chr6:37941206-37941286 ( 29) TGATGCAA 1 chr6:163602254-163602334 ( 47) TGATGCAA 1 chr3:138026933-138027013 ( 46) TGATGCAA 1 chr17:19957039-19957119 ( 27) TGATGCAA 1 chr14:101228570-10122865 ( 18) TGATGCAA 1 chr2:86975320-86975400 ( 5) TGATGCAA 1 chr3:5605515-5605595 ( 24) TGATGCAA 1 chr6:16338068-16338148 ( 19) TGATGCAA 1 chr5:5585914-5585994 ( 45) TGATGCAA 1 chr6:25910668-25910748 ( 32) TGATGCAA 1 chr4:75397836-75397916 ( 32) TGATGCAA 1 chr7:153120108-153120188 ( 45) TGATGCAA 1 chr15:58708045-58708125 ( 18) TGATGCAA 1 chr2:209794250-209794330 ( 68) TGATGCAA 1 chr10:98829877-98829957 ( 34) TGATGCAA 1 chr6:4382734-4382814 ( 24) TGATGCAA 1 chr11:93141124-93141204 ( 40) TGATGCAA 1 chr16:33820882-33820962 ( 11) TGATGCAA 1 chr2:101655190-101655270 ( 43) TGATGCAA 1 chr19:30444461-30444541 ( 24) TGATGCAA 1 chr12:46951883-46951963 ( 44) TGATGCAA 1 chr9:132093323-132093403 ( 29) TGATGCAA 1 chr5:145572334-145572414 ( 55) TGATGCAA 1 chr10:15745566-15745646 ( 40) TGATGCAA 1 chr18:20160327-20160407 ( 59) TGATGCAA 1 chr8:29913976-29914056 ( 20) TGATGCAA 1 chr22:19668989-19669069 ( 12) TGATGCAA 1 chr7:64606849-64606929 ( 60) TGATGCAA 1 chr6:138715421-138715501 ( 18) TGATGCAA 1 chr8:16423333-16423413 ( 24) TGATGCAA 1 chr21:40635505-40635585 ( 56) TGATGCAA 1 chr17:65808661-65808741 ( 12) TGATGCAA 1 chr3:119878979-119879059 ( 15) TGATGCAA 1 chr11:69506388-69506468 ( 48) TGATGCAA 1 chr10:127093628-12709370 ( 38) TGATGCAA 1 chr16:32295973-32296053 ( 17) TGATGAAA 1 chr11:14358748-14358828 ( 18) TGATGAAA 1 chr12:112422819-11242289 ( 4) TGATGAAA 1 chr1:121142821-121142901 ( 4) TGATGAAA 1 chr6:158531053-158531133 ( 14) TGATGAAA 1 chr1:121142473-121142553 ( 1) TGATGAAA 1 chr17:25293747-25293827 ( 32) TGATGAAA 1 chr2:90417273-90417353 ( 38) TGATGAAA 1 chr2:91639101-91639181 ( 13) TGATGAAA 1 chr7:64606114-64606194 ( 22) TGATGAAA 1 chr10:23801452-23801532 ( 36) TGATGAAA 1 chr1:91425300-91425380 ( 21) TGATGAAA 1 chr16:33577283-33577363 ( 43) TGATGAAA 1 chr1:203895353-203895433 ( 26) TGATGAAA 1 chr16:32131799-32131879 ( 38) TGATGAAA 1 chr16:32293440-32293520 ( 4) TGATGAAA 1 chr5:43336497-43336577 ( 21) TGATGAAA 1 chr11:59735645-59735725 ( 51) TGGTGCAA 1 chr2:48348138-48348218 ( 43) TGTTGCAA 1 chr22:21259028-21259108 ( 52) TGTTGCAA 1 chr17:30511143-30511223 ( 32) TTATGCAA 1 chr16:9692121-9692201 ( 36) TTATGCAA 1 chr6:15698857-15698937 ( 62) TGGTGAAA 1 chr3:195443026-195443106 ( 9) TGGTGAAA 1 chr7:134047804-134047884 ( 55) TGACGCAA 1 chr14:34547486-34547566 ( 22) GGATGCAA 1 chr1:202345548-202345628 ( 12) TGTTGAAA 1 chr6:38599284-38599364 ( 73) TCATGCAA 1 chr9:110805994-110806074 ( 32) TGATGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGCAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.88203 E= 3.2e-065 -1267 -1267 -388 182 -1267 -382 208 -318 172 -1267 -229 -260 -1267 -382 -1267 182 -1267 -1267 214 -1267 16 163 -1267 -418 186 -1267 -1267 -1267 186 -1267 -1267 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGCAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 3.2e-065 0.000000 0.000000 0.015385 0.984615 0.000000 0.015385 0.953846 0.030769 0.907692 0.000000 0.046154 0.046154 0.000000 0.015385 0.000000 0.984615 0.000000 0.000000 1.000000 0.000000 0.307692 0.676923 0.000000 0.015385 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGCAA MEME-2 regular expression -------------------------------------------------------------------------------- TGATG[CA]AA -------------------------------------------------------------------------------- Time 8.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TGASTCAK MEME-3 width = 8 sites = 58 llr = 488 E-value = 1.9e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAK MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a11:a: pos.-specific C :1:6:a:2 probability G :9:3:::4 matrix T a::19::5 bits 2.2 * 2.0 * 1.8 *** ** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.2 bits) 0.9 *** *** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACTCAT consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:27233805-27233885 20 3.22e-05 tccaacaaaa tgactcag agtttcatca chr10:45991362-45991442 15 3.22e-05 aggaaataaa tgactcat catattctcc chr4:8338323-8338403 43 3.22e-05 acaaccttct tgactcat cccactgact chr7:107852034-107852114 48 3.22e-05 acaacctgca tgactcag cagagggaca chr6:15698857-15698937 13 3.22e-05 aaaggttctt tgactcat cactctggtg chr2:48348138-48348218 2 3.22e-05 c tgactcat gatggataag chr3:195443026-195443106 33 3.22e-05 tgactcagga tgactcag attagagcag chr1:31944517-31944597 65 3.22e-05 tgaccagggg tgactcag gacaaagc chr7:138035623-138035703 5 3.22e-05 gagc tgactcat ggaagattgc chr4:38968999-38969079 50 3.22e-05 TTTTTTTCCA TGACTCAT AATGGCTTCT chr6:35662377-35662457 57 3.22e-05 agtcatctga tgactcag agctggacta chr8:125959289-125959369 22 3.22e-05 aagagaaaga tgactcat cacatagaaa chr5:158729379-158729459 59 3.22e-05 tgaccagggg tgactcag gacagagcag chr9:38171025-38171105 54 3.22e-05 acggaacaag tgactcag gatgagtcag chr1:115001080-115001160 26 3.22e-05 actcaggaag tgactcag cataactcac chr18:20160327-20160407 22 3.22e-05 gcatgatgga tgactcag catcatgaat chr16:90062332-90062412 3 3.22e-05 GA TGACTCAG CACTGCCCCT chr1:44395375-44395455 22 3.22e-05 GGCCAGGGAG TGACTCAG CCACCCCTTG chr16:90061431-90061511 2 3.22e-05 A TGACTCAG CACCGCCTCT chr16:90061653-90061733 9 3.22e-05 AGCAGGGA TGACTCAG CACCGCCCCT chr1:203895353-203895433 46 3.22e-05 TTGAGCAAGG TGACTCAT TTCTAAGAAG chr7:33019004-33019084 35 3.22e-05 TTCCAGGGGC TGACTCAG CAGCCGGCTT chr7:128417914-128417994 33 6.56e-05 caggaaaata tgagtcat agccaaaaga chr16:10579798-10579878 8 6.56e-05 tctgacc tgagtcat cctgagtcac chr7:105987258-105987338 23 6.56e-05 tctaggttga tgagtcag gggatttcac chr7:22687253-22687333 5 6.56e-05 tcca tgagtcat gctttatctc chr16:29285055-29285135 57 6.56e-05 aatgagtgag tgagtcag tgagcgagtg chr7:138124156-138124236 62 6.56e-05 ataatcagaa tgagtcag ggtagagtag chr11:4015455-4015535 31 6.56e-05 atgtgtgtga tgagtcat ttttctcttg chr4:72978387-72978467 43 6.56e-05 TGTCTCACAA TGAGTCAT GTTGTGAGTC chr2:86922356-86922436 17 6.56e-05 tgctctgacc tgagtcat cctgagtcac chr2:108250332-108250412 63 6.56e-05 aacattctgc tgagtcat tttctggatg chr2:242559937-242560017 29 6.56e-05 gaggggtgag tgagtcag gagtgagtga chr14:93255960-93256040 46 6.56e-05 ctatctttga tgagtcat tttcctctta chr5:43336497-43336577 73 6.56e-05 gggtggagaa tgagtcag chr6:47330758-47330838 41 7.95e-05 gctgtccacg tgactcac tccctgatgt chr16:10591144-10591224 48 7.95e-05 ataacctgcc tgactcac tccagtgaac chr8:580983-581063 35 7.95e-05 TGGACAGAGC TGACTCAC ACCCTCCCGT chr8:580039-580119 58 7.95e-05 CAGACAGAGC TGACTCAC ACCCTCCCGT chr15:39432309-39432389 49 9.39e-05 GCATCTGTTG TGAGTCAC CAAGTGCAAA chr2:224860445-224860525 62 9.39e-05 ctcatgttta tgagtcac caggacaaca chr22:21259028-21259108 39 9.39e-05 GTAAGACCAT TGAGTCAC TCTGGTGTTG chr14:34547486-34547566 45 1.66e-04 agatagcggg tcactcag caggtatgtt chr15:96103269-96103349 21 1.66e-04 ctccaagaaa tgattcat gtcccacgtg chr22:29571561-29571641 46 1.66e-04 ttacaattgc tgattcat tcttttgtcc chr2:201936576-201936656 64 1.66e-04 AGTCTCTACC TGATTCAG GAATCTCTA chr4:77720991-77721071 70 1.66e-04 CTctcattgt tcactcat ttg chr20:1236477-1236557 18 1.66e-04 cgggcttctt tcactcat aaatgtcttt chr11:14358748-14358828 51 2.07e-04 cccaggacaa tgaatcat ccctttgtcc chr10:75668999-75669079 1 2.07e-04 . TGAATCAT GACGGTCCCT chr3:72274128-72274208 11 2.07e-04 ttgtaagtga tgaatcat ttttctcttc chr1:207020988-207021068 60 2.39e-04 ctgataagaa tgacacag gcctggctgg chr21:30590242-30590322 22 2.39e-04 ATCATATTGA TGACACAT TTATGCGCCT chr10:74397380-74397460 30 2.71e-04 gtcctttata tcagtcat tggatgtggg chr1:91774267-91774347 15 2.71e-04 CAGTTGATta tcagtcat atggtcttat chr10:17289373-17289453 61 3.35e-04 gggggttgct tgagacat gcctacagcc chr14:103828304-10382838 12 3.35e-04 gacaaaggga tgattcac atcctaagca chr10:15745566-15745646 53 3.66e-04 TGCAACAGTG TGACACAC AGAGCTGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:27233805-27233885 3.2e-05 19_[+3]_53 chr10:45991362-45991442 3.2e-05 14_[+3]_58 chr4:8338323-8338403 3.2e-05 42_[+3]_30 chr7:107852034-107852114 3.2e-05 47_[+3]_25 chr6:15698857-15698937 3.2e-05 12_[+3]_60 chr2:48348138-48348218 3.2e-05 1_[+3]_71 chr3:195443026-195443106 3.2e-05 32_[+3]_40 chr1:31944517-31944597 3.2e-05 64_[+3]_8 chr7:138035623-138035703 3.2e-05 4_[+3]_68 chr4:38968999-38969079 3.2e-05 49_[+3]_23 chr6:35662377-35662457 3.2e-05 56_[+3]_16 chr8:125959289-125959369 3.2e-05 21_[+3]_51 chr5:158729379-158729459 3.2e-05 58_[+3]_14 chr9:38171025-38171105 3.2e-05 53_[+3]_19 chr1:115001080-115001160 3.2e-05 25_[+3]_47 chr18:20160327-20160407 3.2e-05 21_[+3]_51 chr16:90062332-90062412 3.2e-05 2_[+3]_70 chr1:44395375-44395455 3.2e-05 21_[+3]_51 chr16:90061431-90061511 3.2e-05 1_[+3]_71 chr16:90061653-90061733 3.2e-05 8_[+3]_64 chr1:203895353-203895433 3.2e-05 45_[+3]_27 chr7:33019004-33019084 3.2e-05 34_[+3]_38 chr7:128417914-128417994 6.6e-05 32_[+3]_40 chr16:10579798-10579878 6.6e-05 7_[+3]_65 chr7:105987258-105987338 6.6e-05 22_[+3]_50 chr7:22687253-22687333 6.6e-05 4_[+3]_68 chr16:29285055-29285135 6.6e-05 56_[+3]_16 chr7:138124156-138124236 6.6e-05 61_[+3]_11 chr11:4015455-4015535 6.6e-05 30_[+3]_42 chr4:72978387-72978467 6.6e-05 42_[+3]_30 chr2:86922356-86922436 6.6e-05 16_[+3]_56 chr2:108250332-108250412 6.6e-05 62_[+3]_10 chr2:242559937-242560017 6.6e-05 28_[+3]_44 chr14:93255960-93256040 6.6e-05 45_[+3]_27 chr5:43336497-43336577 6.6e-05 72_[+3] chr6:47330758-47330838 8e-05 40_[+3]_32 chr16:10591144-10591224 8e-05 47_[+3]_25 chr8:580983-581063 8e-05 34_[+3]_38 chr8:580039-580119 8e-05 57_[+3]_15 chr15:39432309-39432389 9.4e-05 48_[+3]_24 chr2:224860445-224860525 9.4e-05 61_[+3]_11 chr22:21259028-21259108 9.4e-05 38_[+3]_34 chr14:34547486-34547566 0.00017 44_[+3]_28 chr15:96103269-96103349 0.00017 20_[+3]_52 chr22:29571561-29571641 0.00017 45_[+3]_27 chr2:201936576-201936656 0.00017 63_[+3]_9 chr4:77720991-77721071 0.00017 69_[+3]_3 chr20:1236477-1236557 0.00017 17_[+3]_55 chr11:14358748-14358828 0.00021 50_[+3]_22 chr10:75668999-75669079 0.00021 [+3]_72 chr3:72274128-72274208 0.00021 10_[+3]_62 chr1:207020988-207021068 0.00024 59_[+3]_13 chr21:30590242-30590322 0.00024 21_[+3]_51 chr10:74397380-74397460 0.00027 29_[+3]_43 chr1:91774267-91774347 0.00027 14_[+3]_58 chr10:17289373-17289453 0.00033 60_[+3]_12 chr14:103828304-10382838 0.00033 11_[+3]_61 chr10:15745566-15745646 0.00037 52_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAK width=8 seqs=58 chr2:27233805-27233885 ( 20) TGACTCAG 1 chr10:45991362-45991442 ( 15) TGACTCAT 1 chr4:8338323-8338403 ( 43) TGACTCAT 1 chr7:107852034-107852114 ( 48) TGACTCAG 1 chr6:15698857-15698937 ( 13) TGACTCAT 1 chr2:48348138-48348218 ( 2) TGACTCAT 1 chr3:195443026-195443106 ( 33) TGACTCAG 1 chr1:31944517-31944597 ( 65) TGACTCAG 1 chr7:138035623-138035703 ( 5) TGACTCAT 1 chr4:38968999-38969079 ( 50) TGACTCAT 1 chr6:35662377-35662457 ( 57) TGACTCAG 1 chr8:125959289-125959369 ( 22) TGACTCAT 1 chr5:158729379-158729459 ( 59) TGACTCAG 1 chr9:38171025-38171105 ( 54) TGACTCAG 1 chr1:115001080-115001160 ( 26) TGACTCAG 1 chr18:20160327-20160407 ( 22) TGACTCAG 1 chr16:90062332-90062412 ( 3) TGACTCAG 1 chr1:44395375-44395455 ( 22) TGACTCAG 1 chr16:90061431-90061511 ( 2) TGACTCAG 1 chr16:90061653-90061733 ( 9) TGACTCAG 1 chr1:203895353-203895433 ( 46) TGACTCAT 1 chr7:33019004-33019084 ( 35) TGACTCAG 1 chr7:128417914-128417994 ( 33) TGAGTCAT 1 chr16:10579798-10579878 ( 8) TGAGTCAT 1 chr7:105987258-105987338 ( 23) TGAGTCAG 1 chr7:22687253-22687333 ( 5) TGAGTCAT 1 chr16:29285055-29285135 ( 57) TGAGTCAG 1 chr7:138124156-138124236 ( 62) TGAGTCAG 1 chr11:4015455-4015535 ( 31) TGAGTCAT 1 chr4:72978387-72978467 ( 43) TGAGTCAT 1 chr2:86922356-86922436 ( 17) TGAGTCAT 1 chr2:108250332-108250412 ( 63) TGAGTCAT 1 chr2:242559937-242560017 ( 29) TGAGTCAG 1 chr14:93255960-93256040 ( 46) TGAGTCAT 1 chr5:43336497-43336577 ( 73) TGAGTCAG 1 chr6:47330758-47330838 ( 41) TGACTCAC 1 chr16:10591144-10591224 ( 48) TGACTCAC 1 chr8:580983-581063 ( 35) TGACTCAC 1 chr8:580039-580119 ( 58) TGACTCAC 1 chr15:39432309-39432389 ( 49) TGAGTCAC 1 chr2:224860445-224860525 ( 62) TGAGTCAC 1 chr22:21259028-21259108 ( 39) TGAGTCAC 1 chr14:34547486-34547566 ( 45) TCACTCAG 1 chr15:96103269-96103349 ( 21) TGATTCAT 1 chr22:29571561-29571641 ( 46) TGATTCAT 1 chr2:201936576-201936656 ( 64) TGATTCAG 1 chr4:77720991-77721071 ( 70) TCACTCAT 1 chr20:1236477-1236557 ( 18) TCACTCAT 1 chr11:14358748-14358828 ( 51) TGAATCAT 1 chr10:75668999-75669079 ( 1) TGAATCAT 1 chr3:72274128-72274208 ( 11) TGAATCAT 1 chr1:207020988-207021068 ( 60) TGACACAG 1 chr21:30590242-30590322 ( 22) TGACACAT 1 chr10:74397380-74397460 ( 30) TCAGTCAT 1 chr1:91774267-91774347 ( 15) TCAGTCAT 1 chr10:17289373-17289453 ( 61) TGAGACAT 1 chr14:103828304-10382838 ( 12) TGATTCAC 1 chr10:15745566-15745646 ( 53) TGACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.54487 E= 1.9e-028 -1250 -1250 -1250 184 -1250 -134 201 -1250 186 -1250 -1250 -1250 -241 134 53 -202 -200 -1250 -1250 173 -1250 219 -1250 -1250 186 -1250 -1250 -1250 -1250 -49 75 73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.9e-028 0.000000 0.000000 0.000000 1.000000 0.000000 0.086207 0.913793 0.000000 1.000000 0.000000 0.000000 0.000000 0.051724 0.551724 0.327586 0.068966 0.068966 0.000000 0.000000 0.931034 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.155172 0.379310 0.465517 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAK MEME-3 regular expression -------------------------------------------------------------------------------- TGA[CG]TCA[TG] -------------------------------------------------------------------------------- Time 12.17 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTCATC MEME-4 width = 8 sites = 32 llr = 276 E-value = 1.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTCATC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::2:9:: pos.-specific C ::1:a1:9 probability G ::21:::1 matrix T :a78::a: bits 2.2 * 2.0 * 1.8 ** * * 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ** **** (12.5 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTTCATC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCATC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:32656205-32656285 50 2.21e-05 tcatgatttc atttcatc tcatcatttc chr16:32656961-32657041 1 2.21e-05 . atttcatc atttcatctt chr1:148850154-148850234 1 2.21e-05 . atttcatc tcaacatttc chr1:115001080-115001160 73 2.21e-05 cacctctatg atttcatc chr16:32657811-32657891 48 2.21e-05 tcatcattcc atttcatc atttcatcat chr7:65014882-65014962 13 2.21e-05 ttttcatctc atttcatc atttcatctt chr1:148848022-148848102 15 2.21e-05 tcatttcatc atttcatc tcatttcctc chr18:29291519-29291599 62 2.21e-05 ATACCATACA ATTTCATC ATCAAGTTTA chr7:65014674-65014754 40 2.21e-05 tcatttcctc atttcatc atttcatttc chr16:32817377-32817457 14 2.21e-05 tcatctcatc atttcatc ttttcatctc chr7:64968786-64968866 71 2.21e-05 ttgacttatc atttcatc at chr11:12972373-12972453 30 2.21e-05 tattactgcc atttcatc tgtgttgcat chr7:64968515-64968595 47 2.21e-05 tcatttcatc atttcatc tcaacatttc chr16:32854295-32854375 5 2.21e-05 catc atttcatc atttcatttc chr8:129440529-129440609 50 3.99e-05 CTCTGCCACA ATGTCATC CTGTTGGCTG chr10:76576934-76577014 18 3.99e-05 GAGTTATTTC ATGTCatc agttgcaatt chr1:212661997-212662077 52 3.99e-05 CAAGGGTGTG ATGTCATC CGGAGAAATG chr7:120800266-120800346 29 6.16e-05 tcactatgac attacatc actattgcat chr20:61970996-61971076 63 6.16e-05 AGATGAATGA ATTACATC ATATCCACAC chr20:61971573-61971653 39 6.16e-05 AGATGAATGA ATTACATC ATATCCACAA chr4:77720991-77721071 21 7.94e-05 ATTGCCTCTC ATTGCATC ATGAACAAAT chr3:28349851-28349931 19 7.94e-05 ttatttcact attgcatc cttctagggg chr2:72111627-72111707 21 1.02e-04 CTGCACACAT ATTTCATG TCTGtgtgtt chr7:138035623-138035703 38 1.20e-04 ctacctaatg atctcatc ctccttaccc chr2:86975320-86975400 64 1.37e-04 AGTGTATTGC ATTTCCTC AACCTCTAT chr2:132792407-132792487 12 1.37e-04 tcatcatttc atttcctc atttcatttc chr8:145682193-145682273 2 1.55e-04 G ATGACATC ACCGGGGGAT chr17:72510280-72510360 64 2.09e-04 gtgatgggtg atgtcatg tgatgggtg chr17:72510907-72510987 15 2.09e-04 gtgacaggtg atgtcatg tgatgggtgg chr16:49118669-49118749 32 2.09e-04 TCATGTGCTC ATATCATC CACCCATGTG chr10:63425785-63425865 5 2.63e-04 TGTT ATCACATC ACCCAGTAGG chrX:124573434-124573514 65 2.81e-04 cttcccacac attgcatg cacagaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCATC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:32656205-32656285 2.2e-05 49_[+4]_23 chr16:32656961-32657041 2.2e-05 [+4]_72 chr1:148850154-148850234 2.2e-05 [+4]_72 chr1:115001080-115001160 2.2e-05 72_[+4] chr16:32657811-32657891 2.2e-05 47_[+4]_25 chr7:65014882-65014962 2.2e-05 12_[+4]_60 chr1:148848022-148848102 2.2e-05 14_[+4]_58 chr18:29291519-29291599 2.2e-05 61_[+4]_11 chr7:65014674-65014754 2.2e-05 39_[+4]_33 chr16:32817377-32817457 2.2e-05 13_[+4]_59 chr7:64968786-64968866 2.2e-05 70_[+4]_2 chr11:12972373-12972453 2.2e-05 29_[+4]_43 chr7:64968515-64968595 2.2e-05 46_[+4]_26 chr16:32854295-32854375 2.2e-05 4_[+4]_68 chr8:129440529-129440609 4e-05 49_[+4]_23 chr10:76576934-76577014 4e-05 17_[+4]_55 chr1:212661997-212662077 4e-05 51_[+4]_21 chr7:120800266-120800346 6.2e-05 28_[+4]_44 chr20:61970996-61971076 6.2e-05 62_[+4]_10 chr20:61971573-61971653 6.2e-05 38_[+4]_34 chr4:77720991-77721071 7.9e-05 20_[+4]_52 chr3:28349851-28349931 7.9e-05 18_[+4]_54 chr2:72111627-72111707 0.0001 20_[+4]_52 chr7:138035623-138035703 0.00012 37_[+4]_35 chr2:86975320-86975400 0.00014 63_[+4]_9 chr2:132792407-132792487 0.00014 11_[+4]_61 chr8:145682193-145682273 0.00015 1_[+4]_71 chr17:72510280-72510360 0.00021 63_[+4]_9 chr17:72510907-72510987 0.00021 14_[+4]_58 chr16:49118669-49118749 0.00021 31_[+4]_41 chr10:63425785-63425865 0.00026 4_[+4]_68 chrX:124573434-124573514 0.00028 64_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCATC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTCATC width=8 seqs=32 chr16:32656205-32656285 ( 50) ATTTCATC 1 chr16:32656961-32657041 ( 1) ATTTCATC 1 chr1:148850154-148850234 ( 1) ATTTCATC 1 chr1:115001080-115001160 ( 73) ATTTCATC 1 chr16:32657811-32657891 ( 48) ATTTCATC 1 chr7:65014882-65014962 ( 13) ATTTCATC 1 chr1:148848022-148848102 ( 15) ATTTCATC 1 chr18:29291519-29291599 ( 62) ATTTCATC 1 chr7:65014674-65014754 ( 40) ATTTCATC 1 chr16:32817377-32817457 ( 14) ATTTCATC 1 chr7:64968786-64968866 ( 71) ATTTCATC 1 chr11:12972373-12972453 ( 30) ATTTCATC 1 chr7:64968515-64968595 ( 47) ATTTCATC 1 chr16:32854295-32854375 ( 5) ATTTCATC 1 chr8:129440529-129440609 ( 50) ATGTCATC 1 chr10:76576934-76577014 ( 18) ATGTCATC 1 chr1:212661997-212662077 ( 52) ATGTCATC 1 chr7:120800266-120800346 ( 29) ATTACATC 1 chr20:61970996-61971076 ( 63) ATTACATC 1 chr20:61971573-61971653 ( 39) ATTACATC 1 chr4:77720991-77721071 ( 21) ATTGCATC 1 chr3:28349851-28349931 ( 19) ATTGCATC 1 chr2:72111627-72111707 ( 21) ATTTCATG 1 chr7:138035623-138035703 ( 38) ATCTCATC 1 chr2:86975320-86975400 ( 64) ATTTCCTC 1 chr2:132792407-132792487 ( 12) ATTTCCTC 1 chr8:145682193-145682273 ( 2) ATGACATC 1 chr17:72510280-72510360 ( 64) ATGTCATG 1 chr17:72510907-72510987 ( 15) ATGTCATG 1 chr16:49118669-49118749 ( 32) ATATCATC 1 chr10:63425785-63425865 ( 5) ATCACATC 1 chrX:124573434-124573514 ( 65) ATTGCATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCATC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.89106 E= 1.9e-004 186 -1164 -1164 -1164 -1164 -1164 -1164 184 -314 -180 -27 136 -82 -1164 -127 142 -1164 219 -1164 -1164 177 -180 -1164 -1164 -1164 -1164 -1164 184 -1164 200 -86 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCATC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.9e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.031250 0.062500 0.187500 0.718750 0.156250 0.000000 0.093750 0.750000 0.000000 1.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTCATC MEME-4 regular expression -------------------------------------------------------------------------------- ATTTCATC -------------------------------------------------------------------------------- Time 15.82 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGAAATG MEME-5 width = 8 sites = 19 llr = 182 E-value = 2.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGAAATG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 9::89a1: pos.-specific C :::1:::: probability G 1:a::::a matrix T :a:11:9: bits 2.2 * * 2.0 * * 1.8 ** * * 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGAAATG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAAATG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:32295973-32296053 37 2.29e-05 aaatgataaa atgaaatg atgagatgaa chr14:101228570-10122865 31 2.29e-05 tgcaatgtgt atgaaatg tccagaaaga chr1:121142821-121142901 32 2.29e-05 aagtgaaatg atgaaatg atgagatgac chr1:121142473-121142553 21 2.29e-05 gaatgatgaa atgaaatg atgaaattgt chr16:33820882-33820962 34 2.29e-05 tgatgcaatg atgaaatg gaatgatgaa chr17:25293747-25293827 16 2.29e-05 agatgaaatg atgaaatg atatgaaatg chr2:90417273-90417353 27 2.29e-05 gtgaaatgaa atgaaatg aaatgatgaa chr2:91639101-91639181 28 2.29e-05 aaatggaatg atgaaatg aaatgatgaa chr7:64606114-64606194 11 2.29e-05 gatgaagtaa atgaaatg aattgatgaa chr16:33577283-33577363 27 2.29e-05 gatgaaataa atgaaatg aaatgaattg chr7:64606849-64606929 18 2.29e-05 agatgaaatg atgaaatg aaatgaaaga chr16:32131799-32131879 1 2.29e-05 . atgaaatg acgagatgaa chr16:32293440-32293520 19 2.29e-05 aaatggaatg atgaaatg atgaaatggt chr8:29913976-29914056 32 4.11e-05 atgcaatggc atgcaatg gattgcggca chr21:40635505-40635585 13 4.11e-05 agacagtcat atgcaatg atacatatga chr8:16423333-16423413 36 5.99e-05 atgcaacact gtgaaatg tgaaagatgg chr17:72510907-72510987 52 8.32e-05 gggtgatatc atgtaatg ggtgatgtca chr6:16338068-16338148 31 1.29e-04 ATGCAAGAAG ATGAAAAG TATTGGCCAA chr14:93255960-93256040 4 1.29e-04 ttt atgatatg aagtcagctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAAATG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:32295973-32296053 2.3e-05 36_[+5]_36 chr14:101228570-10122865 2.3e-05 30_[+5]_42 chr1:121142821-121142901 2.3e-05 31_[+5]_41 chr1:121142473-121142553 2.3e-05 20_[+5]_52 chr16:33820882-33820962 2.3e-05 33_[+5]_39 chr17:25293747-25293827 2.3e-05 15_[+5]_57 chr2:90417273-90417353 2.3e-05 26_[+5]_46 chr2:91639101-91639181 2.3e-05 27_[+5]_45 chr7:64606114-64606194 2.3e-05 10_[+5]_62 chr16:33577283-33577363 2.3e-05 26_[+5]_46 chr7:64606849-64606929 2.3e-05 17_[+5]_55 chr16:32131799-32131879 2.3e-05 [+5]_72 chr16:32293440-32293520 2.3e-05 18_[+5]_54 chr8:29913976-29914056 4.1e-05 31_[+5]_41 chr21:40635505-40635585 4.1e-05 12_[+5]_60 chr8:16423333-16423413 6e-05 35_[+5]_37 chr17:72510907-72510987 8.3e-05 51_[+5]_21 chr6:16338068-16338148 0.00013 30_[+5]_42 chr14:93255960-93256040 0.00013 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAAATG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGAAATG width=8 seqs=19 chr16:32295973-32296053 ( 37) ATGAAATG 1 chr14:101228570-10122865 ( 31) ATGAAATG 1 chr1:121142821-121142901 ( 32) ATGAAATG 1 chr1:121142473-121142553 ( 21) ATGAAATG 1 chr16:33820882-33820962 ( 34) ATGAAATG 1 chr17:25293747-25293827 ( 16) ATGAAATG 1 chr2:90417273-90417353 ( 27) ATGAAATG 1 chr2:91639101-91639181 ( 28) ATGAAATG 1 chr7:64606114-64606194 ( 11) ATGAAATG 1 chr16:33577283-33577363 ( 27) ATGAAATG 1 chr7:64606849-64606929 ( 18) ATGAAATG 1 chr16:32131799-32131879 ( 1) ATGAAATG 1 chr16:32293440-32293520 ( 19) ATGAAATG 1 chr8:29913976-29914056 ( 32) ATGCAATG 1 chr21:40635505-40635585 ( 13) ATGCAATG 1 chr8:16423333-16423413 ( 36) GTGAAATG 1 chr17:72510907-72510987 ( 52) ATGTAATG 1 chr6:16338068-16338148 ( 31) ATGAAAAG 1 chr14:93255960-93256040 ( 4) ATGATATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAAATG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 2.4e-001 178 -1089 -210 -1089 -1089 -1089 -1089 184 -1089 -1089 214 -1089 161 -105 -1089 -241 178 -1089 -1089 -241 186 -1089 -1089 -1089 -238 -1089 -1089 176 -1089 -1089 214 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAAATG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.4e-001 0.947368 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.842105 0.105263 0.000000 0.052632 0.947368 0.000000 0.000000 0.052632 1.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.947368 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGAAATG MEME-5 regular expression -------------------------------------------------------------------------------- ATGAAATG -------------------------------------------------------------------------------- Time 19.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:127093628-12709370 1.12e-02 16_[+2(1.82e-05)]_13_[+2(1.82e-05)]_\ 13_[+2(1.82e-05)]_14 chr16:32854295-32854375 6.76e-04 4_[+4(2.21e-05)]_5_[+4(2.21e-05)]_5_\ [+4(2.21e-05)]_14_[+1(1.78e-05)]_[+1(3.99e-05)]_12 chr7:64968515-64968595 3.29e-03 7_[+4(2.21e-05)]_16_[+1(3.99e-05)]_\ 7_[+4(2.21e-05)]_5_[+4(2.21e-05)]_13 chr11:12972373-12972453 1.78e-04 29_[+4(2.21e-05)]_4_[+1(1.78e-05)]_\ 31 chr11:69506388-69506468 6.80e-03 47_[+2(1.82e-05)]_25 chr7:33019004-33019084 5.96e-05 34_[+3(3.22e-05)]_17_[+4(2.21e-05)]_\ 13 chr5:43336497-43336577 1.44e-05 22_[+5(2.29e-05)]_25_[+3(6.56e-05)]_\ 9_[+3(6.56e-05)] chr7:64968786-64968866 8.92e-04 21_[+4(2.21e-05)]_[+4(2.21e-05)]_5_\ [+4(2.21e-05)]_[+4(2.21e-05)]_12_[+4(2.21e-05)]_2 chr16:32817377-32817457 5.89e-03 [+4(2.21e-05)]_5_[+4(2.21e-05)]_13_\ [+4(2.21e-05)]_[+4(2.21e-05)]_7_[+4(2.21e-05)]_15 chr1:182838535-182838615 9.29e-01 80 chr16:32293440-32293520 2.29e-03 5_[+5(2.29e-05)]_3_[+2(4.11e-05)]_2_\ [+5(2.29e-05)]_[+5(5.99e-05)]_10_[+5(2.29e-05)]_11_[+2(4.11e-05)]_1 chrX:48568048-48568128 6.18e-01 80 chr16:32131799-32131879 8.24e-04 [+5(2.29e-05)]_13_[+5(2.29e-05)]_2_\ [+5(2.29e-05)]_[+5(2.29e-05)]_15_[+5(2.29e-05)]_10 chr7:65014674-65014754 9.56e-04 6_[+4(2.21e-05)]_25_[+4(2.21e-05)]_\ 10_[+4(7.94e-05)]_1_[+1(3.99e-05)]_6 chr3:119878979-119879059 3.76e-04 14_[+2(1.82e-05)]_58 chr12:121581757-12158183 1.98e-04 37_[+4(2.21e-05)]_35 chr1:203895353-203895433 1.10e-03 25_[+2(4.11e-05)]_12_[+3(3.22e-05)]_\ 27 chr16:49118669-49118749 4.96e-03 50_[+1(1.78e-05)]_22 chr17:65808661-65808741 6.66e-04 11_[+2(1.82e-05)]_61 chr18:29291519-29291599 4.43e-04 42_[+1(1.78e-05)]_11_[+4(2.21e-05)]_\ 11 chr21:40635505-40635585 2.62e-04 12_[+5(4.11e-05)]_35_[+2(1.82e-05)]_\ 17 chr7:134047804-134047884 2.02e-04 37_[+1(1.78e-05)]_35 chr7:145478656-145478736 2.18e-02 30_[+1(1.78e-05)]_42 chr8:16423333-16423413 1.50e-03 23_[+2(1.82e-05)]_4_[+5(5.99e-05)]_\ 20_[+5(5.99e-05)]_9 chr6:138715421-138715501 3.92e-03 17_[+2(1.82e-05)]_55 chr8:6506607-6506687 8.84e-01 80 chr19:45793855-45793935 9.29e-01 80 chr2:188381524-188381604 2.16e-01 80 chr2:132792407-132792487 4.68e-03 63_[+4(2.21e-05)]_9 chr7:144559795-144559875 1.04e-03 42_[+1(1.78e-05)]_30 chr7:64606849-64606929 1.55e-03 9_[+5(2.29e-05)]_[+5(2.29e-05)]_10_\ [+5(2.29e-05)]_16_[+2(1.82e-05)]_5_[+2(4.11e-05)] chr16:90061653-90061733 2.04e-01 8_[+3(3.22e-05)]_64 chr16:33577283-33577363 3.28e-03 4_[+5(5.99e-05)]_3_[+2(4.11e-05)]_3_\ [+5(2.29e-05)]_8_[+2(4.11e-05)]_2_[+5(2.29e-05)]_2_[+5(4.11e-05)]_10 chr10:65462998-65463078 2.08e-03 32_[+1(1.78e-05)]_40 chr22:19668989-19669069 6.99e-03 11_[+2(1.82e-05)]_61 chr16:90061431-90061511 1.40e-01 1_[+3(3.22e-05)]_19_[+3(3.22e-05)]_\ 6_[+3(3.22e-05)]_30 chr17:11876206-11876286 9.09e-01 80 chr8:580039-580119 3.54e-01 18_[+3(7.95e-05)]_31_[+3(7.95e-05)]_\ 15 chr8:29913976-29914056 6.81e-06 19_[+2(1.82e-05)]_4_[+5(4.11e-05)]_\ 41 chr21:30590242-30590322 1.16e-04 6_[+4(6.16e-05)]_66 chr2:187304585-187304665 5.54e-01 80 chr1:148848022-148848102 4.50e-03 6_[+4(2.21e-05)]_[+4(2.21e-05)]_10_\ [+4(2.21e-05)]_5_[+4(2.21e-05)]_5_[+4(2.21e-05)]_[+4(2.21e-05)]_6 chr17:549326-549406 7.84e-01 80 chr14:93255960-93256040 1.68e-03 45_[+3(6.56e-05)]_27 chr2:242559937-242560017 1.29e-01 28_[+3(6.56e-05)]_44 chr1:12805375-12805455 2.62e-03 26_[+4(2.21e-05)]_46 chr1:44395375-44395455 8.06e-05 3_[+1(1.78e-05)]_10_[+3(3.22e-05)]_\ 24_[+3(7.95e-05)]_19 chr1:91425300-91425380 8.20e-03 20_[+2(4.11e-05)]_52 chr15:67374499-67374579 4.19e-01 80 chr7:65014882-65014962 2.30e-03 12_[+4(2.21e-05)]_[+4(2.21e-05)]_13_\ [+4(2.21e-05)]_8_[+4(2.21e-05)]_15 chr4:9850111-9850191 1.66e-03 11_[+1(1.78e-05)]_61 chr1:202345548-202345628 5.94e-04 80 chr16:90062332-90062412 1.31e-01 2_[+3(3.22e-05)]_33_[+3(3.22e-05)]_\ 19_[+3(3.22e-05)]_2 chr2:205335039-205335119 1.18e-02 13_[+1(1.78e-05)]_28_[+1(1.78e-05)]_\ 23 chr10:23801452-23801532 1.41e-04 35_[+2(4.11e-05)]_2_[+1(9.02e-05)]_\ 27 chr3:28349851-28349931 5.17e-03 18_[+4(7.94e-05)]_10_[+4(2.21e-05)]_\ 36 chr3:127729225-127729305 3.70e-04 40_[+1(1.78e-05)]_32 chr6:142337963-142338043 8.95e-01 80 chr18:20160327-20160407 8.34e-04 21_[+3(3.22e-05)]_29_[+2(1.82e-05)]_\ 14 chr1:91391680-91391760 8.60e-01 80 chr16:32657811-32657891 5.43e-03 11_[+1(7.55e-05)]_[+1(3.99e-05)]_7_\ [+4(2.21e-05)]_5_[+4(2.21e-05)]_[+4(2.21e-05)]_17 chr12:32207235-32207315 7.79e-01 80 chr10:15745566-15745646 1.02e-02 39_[+2(1.82e-05)]_33 chr3:72274128-72274208 7.06e-04 59_[+1(3.99e-05)]_13 chr22:21259028-21259108 1.45e-03 38_[+3(9.39e-05)]_5_[+2(7.45e-05)]_\ 21 chr9:110805994-110806074 1.50e-04 25_[+5(2.29e-05)]_[+5(8.32e-05)]_39 chr7:64606114-64606194 2.92e-03 10_[+5(2.29e-05)]_3_[+2(4.11e-05)]_\ 2_[+5(2.29e-05)]_5_[+5(2.29e-05)]_[+5(2.29e-05)]_[+5(2.29e-05)]_3_\ [+2(4.11e-05)]_1 chr5:145572334-145572414 1.14e-02 54_[+2(1.82e-05)]_18 chr2:91639101-91639181 2.92e-03 4_[+2(4.11e-05)]_2_[+5(2.29e-05)]_5_\ 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chr16:10595062-10595142 8.98e-01 80 chr3:14162499-14162579 8.23e-01 80 chr16:32656205-32656285 9.61e-04 16_[+1(1.78e-05)]_7_[+4(2.21e-05)]_\ 10_[+4(2.21e-05)]_23 chr12:25015336-25015416 7.87e-01 80 chrX:71792816-71792896 4.06e-01 80 chr14:88491103-88491183 4.74e-01 80 chr10:47619250-47619330 7.69e-01 80 chr7:5123123-5123203 2.31e-01 80 chr2:232651072-232651152 9.12e-01 80 chr6:25910668-25910748 5.05e-03 31_[+2(1.82e-05)]_41 chr1:180092753-180092833 6.66e-03 30_[+1(1.78e-05)]_42 chr14:103828304-10382838 5.91e-05 52_[+1(1.78e-05)]_20 chr22:29571561-29571641 6.57e-02 80 chr20:61971573-61971653 4.45e-03 38_[+4(6.16e-05)]_20_[+4(6.16e-05)]_\ 6 chr8:580983-581063 2.55e-01 34_[+3(7.95e-05)]_38 chr2:46295081-46295161 7.15e-02 22_[+1(6.16e-05)]_50 chr11:59735645-59735725 7.44e-04 50_[+2(5.60e-05)]_22 chr4:71520424-71520504 7.04e-01 80 chr6:18090793-18090873 9.99e-01 80 chr16:10591144-10591224 8.00e-02 47_[+3(7.95e-05)]_25 chr13:41345319-41345399 9.99e-01 80 chr16:9692121-9692201 9.22e-02 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22_[+3(6.56e-05)]_50 chr4:95309260-95309340 6.24e-01 80 chr6:15698857-15698937 2.85e-03 12_[+3(3.22e-05)]_60 chr10:95462378-95462458 6.08e-01 80 chr1:228386854-228386934 7.36e-01 80 chr6:138235816-138235896 5.67e-03 80 chr14:101228570-10122865 8.17e-04 17_[+2(1.82e-05)]_5_[+5(2.29e-05)]_\ 42 chr16:32295973-32296053 1.90e-03 10_[+5(2.29e-05)]_[+5(2.29e-05)]_10_\ [+5(2.29e-05)]_5_[+5(2.29e-05)]_5_[+5(5.99e-05)]_10 chr15:96103269-96103349 1.04e-05 60_[+4(2.21e-05)]_12 chr1:91774267-91774347 5.83e-02 80 chr7:107852034-107852114 2.71e-02 47_[+3(3.22e-05)]_17_[+3(3.22e-05)] chr17:19957039-19957119 1.67e-02 26_[+2(1.82e-05)]_46 chr16:740418-740498 9.56e-01 80 chr5:56059877-56059957 1.11e-01 80 chr18:67872972-67873052 3.43e-01 80 chr17:72329128-72329208 5.10e-01 80 chr6:7701818-7701898 8.44e-01 80 chr10:74147059-74147139 2.69e-03 44_[+4(2.21e-05)]_28 chr5:139990784-139990864 9.75e-01 80 chr3:138026933-138027013 3.49e-02 45_[+2(1.82e-05)]_27 chr7:88518151-88518231 4.47e-04 46_[+1(1.78e-05)]_26 chr9:101630121-101630201 1.10e-03 40_[+1(1.78e-05)]_32 chr1:112142630-112142710 8.84e-01 80 chr20:33476450-33476530 6.76e-01 80 chr20:61970996-61971076 2.22e-04 7_[+1(1.78e-05)]_19_[+4(6.16e-05)]_\ 20_[+4(6.16e-05)]_10 chr2:72111627-72111707 2.87e-02 80 chr16:10579798-10579878 1.09e-01 7_[+3(6.56e-05)]_2_[+3(9.39e-05)]_\ 55 chr5:180209052-180209132 5.59e-01 80 chr12:133405513-13340559 9.49e-01 80 chr11:43974076-43974156 2.54e-01 80 chr11:9632850-9632930 1.91e-02 59_[+1(1.78e-05)]_13 chr6:163602254-163602334 4.12e-03 46_[+2(1.82e-05)]_26 chr17:73077162-73077242 9.54e-04 27_[+4(6.16e-05)]_45 chr14:24658133-24658213 8.50e-01 80 chr2:224822109-224822189 8.79e-01 80 chr2:12596659-12596739 2.75e-01 80 chr14:20645694-20645774 4.12e-02 80 chr8:121457434-121457514 8.94e-01 80 chr10:74397380-74397460 2.30e-02 80 chr4:8338323-8338403 2.53e-02 42_[+3(3.22e-05)]_5_[+3(7.95e-05)]_\ 17 chr3:69192960-69193040 2.85e-02 54_[+1(6.16e-05)]_18 chr11:59578260-59578340 9.63e-01 80 chr6:37941206-37941286 2.00e-02 28_[+2(1.82e-05)]_44 chr10:45991362-45991442 7.48e-02 14_[+3(3.22e-05)]_58 chr1:186164609-186164689 7.90e-01 80 chr7:128417914-128417994 9.81e-02 32_[+3(6.56e-05)]_40 chr6:14301858-14301938 6.89e-01 80 chr13:50420846-50420926 2.81e-01 80 chr2:27233805-27233885 2.21e-04 19_[+3(3.22e-05)]_2_[+1(3.99e-05)]_\ 43 chr6:47330758-47330838 4.26e-03 22_[+1(6.16e-05)]_10_[+3(7.95e-05)]_\ 32 chr7:120800266-120800346 5.36e-04 28_[+4(6.16e-05)]_4_[+1(1.78e-05)]_\ 32 chr8:129440529-129440609 2.14e-03 13_[+2(1.82e-05)]_28_[+4(3.99e-05)]_\ 23 chr1:207020988-207021068 1.93e-01 80 chr14:34547486-34547566 8.50e-03 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************