******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/THAP1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:87276335-87276415 1.0000 80 chr2:31456867-31456947 1.0000 80 chr20:3996304-3996384 1.0000 80 chr19:48867181-48867261 1.0000 80 chr15:36871746-36871826 1.0000 80 chr20:10199455-10199535 1.0000 80 chr1:161190621-161190701 1.0000 80 chr8:120885976-120886056 1.0000 80 chr10:3222733-3222813 1.0000 80 chrX:63615367-63615447 1.0000 80 chr19:17622299-17622379 1.0000 80 chr10:71078012-71078092 1.0000 80 chr14:103583094-10358317 1.0000 80 chr3:52018069-52018149 1.0000 80 chr21:47063036-47063116 1.0000 80 chr10:104221002-10422108 1.0000 80 chr1:38955630-38955710 1.0000 80 chr6:110012343-110012423 1.0000 80 chr11:63684614-63684694 1.0000 80 chr22:51052294-51052374 1.0000 80 chr9:90524761-90524841 1.0000 80 chr21:43430077-43430157 1.0000 80 chr17:38244612-38244692 1.0000 80 chr5:126409151-126409231 1.0000 80 chr15:35838560-35838640 1.0000 80 chr5:176981599-176981679 1.0000 80 chr7:55955118-55955198 1.0000 80 chrX:47930760-47930840 1.0000 80 chr10:121632450-12163253 1.0000 80 chr2:113012702-113012782 1.0000 80 chr1:156426447-156426527 1.0000 80 chr2:36824895-36824975 1.0000 80 chr8:1711917-1711997 1.0000 80 chr20:25371620-25371700 1.0000 80 chr1:104615568-104615648 1.0000 80 chrX:133507209-133507289 1.0000 80 chr17:3627615-3627695 1.0000 80 chr10:104678242-10467832 1.0000 80 chr3:51533584-51533664 1.0000 80 chr10:123687580-12368766 1.0000 80 chr16:89181824-89181904 1.0000 80 chr12:133066688-13306676 1.0000 80 chr7:57271368-57271448 1.0000 80 chr20:34042653-34042733 1.0000 80 chr20:36971823-36971903 1.0000 80 chrX:109641286-109641366 1.0000 80 chr19:12886456-12886536 1.0000 80 chr3:48700391-48700471 1.0000 80 chr12:110318275-11031835 1.0000 80 chr3:53916191-53916271 1.0000 80 chrX:47696146-47696226 1.0000 80 chr7:100860937-100861017 1.0000 80 chr3:125314433-125314513 1.0000 80 chr11:65082165-65082245 1.0000 80 chr19:49138852-49138932 1.0000 80 chr19:49127376-49127456 1.0000 80 chr22:50311985-50312065 1.0000 80 chr19:16582799-16582879 1.0000 80 chr8:33370623-33370703 1.0000 80 chr10:104192350-10419243 1.0000 80 chr1:161129247-161129327 1.0000 80 chr3:179065366-179065446 1.0000 80 chr1:90460385-90460465 1.0000 80 chr9:32552265-32552345 1.0000 80 chr19:16739050-16739130 1.0000 80 chr1:5888605-5888685 1.0000 80 chr10:99639107-99639187 1.0000 80 chr5:64920181-64920261 1.0000 80 chr17:40761541-40761621 1.0000 80 chr7:63560539-63560619 1.0000 80 chr19:31187559-31187639 1.0000 80 chrX:135991272-135991352 1.0000 80 chr10:16859681-16859761 1.0000 80 chr6:29617566-29617646 1.0000 80 chr2:101179337-101179417 1.0000 80 chr17:49198346-49198426 1.0000 80 chr19:59070452-59070532 1.0000 80 chr2:33824496-33824576 1.0000 80 chr9:27573756-27573836 1.0000 80 chr17:37055133-37055213 1.0000 80 chrX:48456461-48456541 1.0000 80 chr11:113930275-11393035 1.0000 80 chr4:83350128-83350208 1.0000 80 chrX:47863420-47863500 1.0000 80 chr17:16557125-16557205 1.0000 80 chr16:30546256-30546336 1.0000 80 chr14:88459544-88459624 1.0000 80 chr20:10415256-10415336 1.0000 80 chr2:219827761-219827841 1.0000 80 chr1:247373749-247373829 1.0000 80 chr1:154933921-154934001 1.0000 80 chr6:74363768-74363848 1.0000 80 chr16:23739243-23739323 1.0000 80 chr19:37701466-37701546 1.0000 80 chr18:55297468-55297548 1.0000 80 chr1:155189438-155189518 1.0000 80 chr11:70049292-70049372 1.0000 80 chr11:67250465-67250545 1.0000 80 chr6:157877601-157877681 1.0000 80 chr16:67143752-67143832 1.0000 80 chr14:35008869-35008949 1.0000 80 chr1:160807443-160807523 1.0000 80 chr18:54318377-54318457 1.0000 80 chr9:5437923-5438003 1.0000 80 chr3:178865802-178865882 1.0000 80 chr1:6296014-6296094 1.0000 80 chr20:5730936-5731016 1.0000 80 chr20:18488373-18488453 1.0000 80 chrX:47180870-47180950 1.0000 80 chr14:21458037-21458117 1.0000 80 chr1:78245231-78245311 1.0000 80 chr1:6685217-6685297 1.0000 80 chr6:33539147-33539227 1.0000 80 chrX:30907490-30907570 1.0000 80 chr7:37609852-37609932 1.0000 80 chrX:119763980-119764060 1.0000 80 chr19:39897310-39897390 1.0000 80 chr2:131099798-131099878 1.0000 80 chr11:44341327-44341407 1.0000 80 chrX:40067056-40067136 1.0000 80 chr1:28995217-28995297 1.0000 80 chr12:6982434-6982514 1.0000 80 chr19:53696592-53696672 1.0000 80 chr15:67834913-67834993 1.0000 80 chr11:63993583-63993663 1.0000 80 chr7:149411872-149411952 1.0000 80 chr17:40831702-40831782 1.0000 80 chr20:10415804-10415884 1.0000 80 chr17:7232710-7232790 1.0000 80 chr9:104296032-104296112 1.0000 80 chr7:152456676-152456756 1.0000 80 chr1:19181222-19181302 1.0000 80 chr6:30294370-30294450 1.0000 80 chr17:45570067-45570147 1.0000 80 chr10:112678988-11267906 1.0000 80 chr18:39535002-39535082 1.0000 80 chr12:110434195-11043427 1.0000 80 chr16:838307-838387 1.0000 80 chr10:112678417-11267849 1.0000 80 chr6:117923826-117923906 1.0000 80 chr20:57227334-57227414 1.0000 80 chr7:2883949-2884029 1.0000 80 chr6:137143653-137143733 1.0000 80 chr17:1733117-1733197 1.0000 80 chr1:206629269-206629349 1.0000 80 chr1:231004184-231004264 1.0000 80 chr20:2821263-2821343 1.0000 80 chr1:213189193-213189273 1.0000 80 chr17:260060-260140 1.0000 80 chr1:59281029-59281109 1.0000 80 chr19:16308566-16308646 1.0000 80 chr20:43538673-43538753 1.0000 80 chrX:153237537-153237617 1.0000 80 chr2:64751249-64751329 1.0000 80 chr14:69445443-69445523 1.0000 80 chr22:24059556-24059636 1.0000 80 chr11:119076551-11907663 1.0000 80 chr13:38923655-38923735 1.0000 80 chr15:90777131-90777211 1.0000 80 chr1:45118649-45118729 1.0000 80 chr2:219827960-219828040 1.0000 80 chr20:10200241-10200321 1.0000 80 chr6:33551677-33551757 1.0000 80 chr14:64010281-64010361 1.0000 80 chr6:146285495-146285575 1.0000 80 chr2:27434908-27434988 1.0000 80 chr17:7210269-7210349 1.0000 80 chr22:30820040-30820120 1.0000 80 chr16:72042441-72042521 1.0000 80 chr11:394321-394401 1.0000 80 chr22:23152675-23152755 1.0000 80 chr16:2954391-2954471 1.0000 80 chr19:14229119-14229199 1.0000 80 chr1:155188796-155188876 1.0000 80 chr14:24664894-24664974 1.0000 80 chr18:47807941-47808021 1.0000 80 chr18:43753963-43754043 1.0000 80 chrX:47341916-47341996 1.0000 80 chr1:16302090-16302170 1.0000 80 chr9:35749723-35749803 1.0000 80 chr3:178789604-178789684 1.0000 80 chr3:101396075-101396155 1.0000 80 chr17:1359621-1359701 1.0000 80 chr9:26892805-26892885 1.0000 80 chr9:86536287-86536367 1.0000 80 chr2:43447164-43447244 1.0000 80 chr14:64805616-64805696 1.0000 80 chr16:1020894-1020974 1.0000 80 chr20:10414852-10414932 1.0000 80 chr17:40021593-40021673 1.0000 80 chr17:18218279-18218359 1.0000 80 chr19:50316896-50316976 1.0000 80 chr2:62733014-62733094 1.0000 80 chr5:134209942-134210022 1.0000 80 chr19:54693886-54693966 1.0000 80 chr19:49217628-49217708 1.0000 80 chr10:99393233-99393313 1.0000 80 chr16:57769220-57769300 1.0000 80 chr12:53574219-53574299 1.0000 80 chr16:30547144-30547224 1.0000 80 chr3:33155901-33155981 1.0000 80 chr20:43991606-43991686 1.0000 80 chr3:119217202-119217282 1.0000 80 chr12:8234672-8234752 1.0000 80 chr16:29973250-29973330 1.0000 80 chr9:95857786-95857866 1.0000 80 chr1:43282974-43283054 1.0000 80 chr17:2689620-2689700 1.0000 80 chr7:72298727-72298807 1.0000 80 chr19:38826389-38826469 1.0000 80 chr20:388865-388945 1.0000 80 chr1:245331491-245331571 1.0000 80 chr3:64009134-64009214 1.0000 80 chr7:157129599-157129679 1.0000 80 chr2:160143364-160143444 1.0000 80 chr2:202316179-202316259 1.0000 80 chr19:42722005-42722085 1.0000 80 chrX:1710399-1710479 1.0000 80 chr4:48832925-48833005 1.0000 80 chr1:6685418-6685498 1.0000 80 chr19:49017192-49017272 1.0000 80 chr6:109704243-109704323 1.0000 80 chr14:23770997-23771077 1.0000 80 chr3:51422405-51422485 1.0000 80 chr17:57970364-57970444 1.0000 80 chr1:27114373-27114453 1.0000 80 chr12:56040026-56040106 1.0000 80 chr10:119806360-11980644 1.0000 80 chr5:1799915-1799995 1.0000 80 chr17:7590854-7590934 1.0000 80 chr19:38865068-38865148 1.0000 80 chr19:38826906-38826986 1.0000 80 chr9:140135229-140135309 1.0000 80 chr3:57583374-57583454 1.0000 80 chr12:57082032-57082112 1.0000 80 chr20:34050306-34050386 1.0000 80 chr9:133568979-133569059 1.0000 80 chr16:29827290-29827370 1.0000 80 chr11:111742199-11174227 1.0000 80 chr1:156163695-156163775 1.0000 80 chr1:161147220-161147300 1.0000 80 chr19:37663659-37663739 1.0000 80 chr9:124855647-124855727 1.0000 80 chr11:394550-394630 1.0000 80 chrX:129299789-129299869 1.0000 80 chr1:47903501-47903581 1.0000 80 chr18:55289085-55289165 1.0000 80 chr17:58156063-58156143 1.0000 80 chr12:67835700-67835780 1.0000 80 chr2:127415555-127415635 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_THAP1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/THAP1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.171 C 0.33 G 0.332 T 0.167 Background letter frequencies (from file dataset with add-one prior applied): A 0.171 C 0.33 G 0.332 T 0.167 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCATCTT MEME-1 width = 8 sites = 47 llr = 458 E-value = 1.5e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :9a::6:: probability G 9::::2:: matrix T 1:::a2aa bits 2.6 * 2.3 ** ** 2.1 ** ** 1.8 ** ** Relative 1.5 *** ** Entropy 1.3 ***** ** (14.0 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCATCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:55289085-55289165 58 9.50e-06 CGCCGGGGCC GCCATCTT TGGTGAGGGC chr1:161147220-161147300 51 9.50e-06 CATCGCTGCC GCCATCTT GGAAGCGGGC chr16:29827290-29827370 18 9.50e-06 CTTCCCGGTG GCCATCTT TACTGTGGGC chr17:40021593-40021673 26 9.50e-06 tgccgcagcc gccATCTT GACGCCGCTG chr22:30820040-30820120 4 9.50e-06 TCC GCCATCTT TGATCAGGGC chr22:24059556-24059636 40 9.50e-06 GGTCGTCCGC GCCATCTT TGTTGAGGGC chrX:153237537-153237617 15 9.50e-06 CCTGGGAGCC GCCATCTT GCCACTTCCC chr12:110434195-11043427 52 9.50e-06 CTGCCTTGTC GCCATCTT GAGTGAGGGC chr20:10415804-10415884 27 9.50e-06 GTGTTTCGCT GCCATCTT AAATCCTGGC chr6:33539147-33539227 56 9.50e-06 CGCGGCGGCG GCCATCTT GGACTCGGGC chr1:6685217-6685297 26 9.50e-06 CGCCGCCGCC GCCATCTT TGTTGGGGGC chr6:74363768-74363848 23 9.50e-06 CGCCCCCGCC GCCATCTT AGGTGTGGGC chr19:59070452-59070532 51 9.50e-06 GGAGTTAGTC GCCATCTT TGAGTGGGGC chr3:125314433-125314513 54 9.50e-06 AGCGTCTGGC GCCATCTT GGGTCAGGGC chr3:48700391-48700471 35 9.50e-06 AGATGTTGCC GCCATCTT TATTGAGGAC chr19:12886456-12886536 22 9.50e-06 CTCCAGCCCC GCCATCTT GGATCCGGGC chr7:57271368-57271448 46 9.50e-06 GGCCGTTCGC GCCATCTT TGTTGAGGGC chr10:123687580-12368766 56 9.50e-06 CGCCGCCCGC GCCATCTT GACCGAGGGC chr1:104615568-104615648 28 9.50e-06 CCCCGCTGCC GCCATCTT TGTTACGGGC chr10:121632450-12163253 32 9.50e-06 cggcggcgcc gcCATCTT GGAGACGGGC chr17:38244612-38244692 51 9.50e-06 AGTCTCCGAC GCCATCTT TGAACTGGGC chrX:63615367-63615447 56 9.50e-06 AGCCGTTCCC GCCATCTT GCTTCCTGGC chr20:10199455-10199535 20 9.50e-06 AAAACGGACG GCCATCTT TGATGAGGGC chr19:38826389-38826469 51 1.43e-05 AGTGTGGGCG GCCATTTT GAGACCGGGC chr2:62733014-62733094 58 1.43e-05 AGGCGACATC GCCATTTT AGGTACGGGC chr14:88459544-88459624 60 1.43e-05 CGCCGCCGCC GCCATTTT GAGTGCGGGT chrX:109641286-109641366 44 1.43e-05 AGGCAGGCCG GCCATTTT GCTTTCTGGC chr20:25371620-25371700 10 1.43e-05 CCACCCGCA GCCATTTT GTGGGAGGGT chr5:176981599-176981679 58 1.43e-05 GGCCGCCTGC GCCATTTT GAATAAGGTC chr9:124855647-124855727 46 2.39e-05 GGCAGCGGCG GCCATGTT GGAAGAGGGC chr19:38865068-38865148 43 2.39e-05 AGCCAGGGCA GCCATGTT CATTATTGGA chr1:245331491-245331571 47 2.39e-05 TCTGTGGGCT GCCATGTT TGTGGGACAT chrX:47180870-47180950 54 2.39e-05 CTCGGGCGCC GCCATGTT GGATGACGTT chr18:55297468-55297548 47 2.39e-05 CGCCGGCGCC GCCATGTT GTCTCCGGGC chr10:104192350-10419243 51 2.39e-05 CGCCGTGGCG GCCATGTT TGAGAAGGGC chr10:3222733-3222813 35 2.87e-05 gggccctccc tccatctt tgaagctggc chr3:101396075-101396155 26 3.85e-05 AATGCGGGTG GACATTTT GGAAGCGGGT chr18:43753963-43754043 67 3.85e-05 GGCCTCTGGT GACATTTT CTTGGG chr9:27573756-27573836 34 4.82e-05 CACACCAAGC GTCATCTT TTACGTGGGC chr10:119806360-11980644 71 5.30e-05 GTTGGCCTTC TCCATGTT GG chrX:47696146-47696226 32 5.30e-05 CCGTAACTTC TCCATGTT GACTCCTGGC chr20:34042653-34042733 49 5.80e-05 ATGATTGAGG GCAATTTT TCTTTTCTGC chr12:67835700-67835780 45 8.12e-05 TGGGGAAGGC GCCCTCTT GTGGAACTCG chr17:2689620-2689700 63 1.00e-04 CAACATGGCT GCCATCCT AGAAACAAGC chr10:99393233-99393313 4 1.00e-04 GCC GCCATCCT GGGCGACCGC chr15:67834913-67834993 28 1.19e-04 GGGAGCTGCT GCCCTTTT CCAACATGGC chr19:37701466-37701546 34 1.33e-04 TAACTTGGAA GCCAATTT CAGCCCACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:55289085-55289165 9.5e-06 57_[+1]_15 chr1:161147220-161147300 9.5e-06 50_[+1]_22 chr16:29827290-29827370 9.5e-06 17_[+1]_55 chr17:40021593-40021673 9.5e-06 25_[+1]_47 chr22:30820040-30820120 9.5e-06 3_[+1]_69 chr22:24059556-24059636 9.5e-06 39_[+1]_33 chrX:153237537-153237617 9.5e-06 14_[+1]_58 chr12:110434195-11043427 9.5e-06 51_[+1]_21 chr20:10415804-10415884 9.5e-06 26_[+1]_46 chr6:33539147-33539227 9.5e-06 55_[+1]_17 chr1:6685217-6685297 9.5e-06 25_[+1]_47 chr6:74363768-74363848 9.5e-06 22_[+1]_50 chr19:59070452-59070532 9.5e-06 50_[+1]_22 chr3:125314433-125314513 9.5e-06 53_[+1]_19 chr3:48700391-48700471 9.5e-06 34_[+1]_38 chr19:12886456-12886536 9.5e-06 21_[+1]_51 chr7:57271368-57271448 9.5e-06 45_[+1]_27 chr10:123687580-12368766 9.5e-06 55_[+1]_17 chr1:104615568-104615648 9.5e-06 27_[+1]_45 chr10:121632450-12163253 9.5e-06 31_[+1]_41 chr17:38244612-38244692 9.5e-06 50_[+1]_22 chrX:63615367-63615447 9.5e-06 55_[+1]_17 chr20:10199455-10199535 9.5e-06 19_[+1]_53 chr19:38826389-38826469 1.4e-05 50_[+1]_22 chr2:62733014-62733094 1.4e-05 57_[+1]_15 chr14:88459544-88459624 1.4e-05 59_[+1]_13 chrX:109641286-109641366 1.4e-05 43_[+1]_29 chr20:25371620-25371700 1.4e-05 9_[+1]_63 chr5:176981599-176981679 1.4e-05 57_[+1]_15 chr9:124855647-124855727 2.4e-05 45_[+1]_27 chr19:38865068-38865148 2.4e-05 42_[+1]_30 chr1:245331491-245331571 2.4e-05 46_[+1]_26 chrX:47180870-47180950 2.4e-05 53_[+1]_19 chr18:55297468-55297548 2.4e-05 46_[+1]_26 chr10:104192350-10419243 2.4e-05 50_[+1]_22 chr10:3222733-3222813 2.9e-05 34_[+1]_38 chr3:101396075-101396155 3.8e-05 25_[+1]_47 chr18:43753963-43754043 3.8e-05 66_[+1]_6 chr9:27573756-27573836 4.8e-05 33_[+1]_39 chr10:119806360-11980644 5.3e-05 70_[+1]_2 chrX:47696146-47696226 5.3e-05 31_[+1]_41 chr20:34042653-34042733 5.8e-05 48_[+1]_24 chr12:67835700-67835780 8.1e-05 44_[+1]_28 chr17:2689620-2689700 0.0001 62_[+1]_10 chr10:99393233-99393313 0.0001 3_[+1]_69 chr15:67834913-67834993 0.00012 27_[+1]_45 chr19:37701466-37701546 0.00013 33_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATCTT width=8 seqs=47 chr18:55289085-55289165 ( 58) GCCATCTT 1 chr1:161147220-161147300 ( 51) GCCATCTT 1 chr16:29827290-29827370 ( 18) GCCATCTT 1 chr17:40021593-40021673 ( 26) GCCATCTT 1 chr22:30820040-30820120 ( 4) GCCATCTT 1 chr22:24059556-24059636 ( 40) GCCATCTT 1 chrX:153237537-153237617 ( 15) GCCATCTT 1 chr12:110434195-11043427 ( 52) GCCATCTT 1 chr20:10415804-10415884 ( 27) GCCATCTT 1 chr6:33539147-33539227 ( 56) GCCATCTT 1 chr1:6685217-6685297 ( 26) GCCATCTT 1 chr6:74363768-74363848 ( 23) GCCATCTT 1 chr19:59070452-59070532 ( 51) GCCATCTT 1 chr3:125314433-125314513 ( 54) GCCATCTT 1 chr3:48700391-48700471 ( 35) GCCATCTT 1 chr19:12886456-12886536 ( 22) GCCATCTT 1 chr7:57271368-57271448 ( 46) GCCATCTT 1 chr10:123687580-12368766 ( 56) GCCATCTT 1 chr1:104615568-104615648 ( 28) GCCATCTT 1 chr10:121632450-12163253 ( 32) GCCATCTT 1 chr17:38244612-38244692 ( 51) GCCATCTT 1 chrX:63615367-63615447 ( 56) GCCATCTT 1 chr20:10199455-10199535 ( 20) GCCATCTT 1 chr19:38826389-38826469 ( 51) GCCATTTT 1 chr2:62733014-62733094 ( 58) GCCATTTT 1 chr14:88459544-88459624 ( 60) GCCATTTT 1 chrX:109641286-109641366 ( 44) GCCATTTT 1 chr20:25371620-25371700 ( 10) GCCATTTT 1 chr5:176981599-176981679 ( 58) GCCATTTT 1 chr9:124855647-124855727 ( 46) GCCATGTT 1 chr19:38865068-38865148 ( 43) GCCATGTT 1 chr1:245331491-245331571 ( 47) GCCATGTT 1 chrX:47180870-47180950 ( 54) GCCATGTT 1 chr18:55297468-55297548 ( 47) GCCATGTT 1 chr10:104192350-10419243 ( 51) GCCATGTT 1 chr10:3222733-3222813 ( 35) TCCATCTT 1 chr3:101396075-101396155 ( 26) GACATTTT 1 chr18:43753963-43754043 ( 67) GACATTTT 1 chr9:27573756-27573836 ( 34) GTCATCTT 1 chr10:119806360-11980644 ( 71) TCCATGTT 1 chrX:47696146-47696226 ( 32) TCCATGTT 1 chr20:34042653-34042733 ( 49) GCAATTTT 1 chr12:67835700-67835780 ( 45) GCCCTCTT 1 chr17:2689620-2689700 ( 63) GCCATCCT 1 chr10:99393233-99393313 ( 4) GCCATCCT 1 chr15:67834913-67834993 ( 28) GCCCTTTT 1 chr19:37701466-37701546 ( 34) GCCAATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 1.5e-043 -1220 -1220 150 -139 -201 150 -1220 -297 -300 157 -1220 -1220 248 -295 -1220 -1220 -300 -1220 -1220 255 -1220 85 -96 48 -1220 -295 -1220 252 -1220 -1220 -1220 258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.5e-043 0.000000 0.000000 0.936170 0.063830 0.042553 0.936170 0.000000 0.021277 0.021277 0.978723 0.000000 0.000000 0.957447 0.042553 0.000000 0.000000 0.021277 0.000000 0.000000 0.978723 0.000000 0.595745 0.170213 0.234043 0.000000 0.042553 0.000000 0.957447 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 regular expression -------------------------------------------------------------------------------- GCCAT[CT]TT -------------------------------------------------------------------------------- Time 5.02 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGATGGC MEME-2 width = 8 sites = 46 llr = 435 E-value = 1.4e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa291::: pos.-specific C ::21:::9 probability G ::6::aa: matrix T ::::9::1 bits 2.6 * 2.3 ** * 2.1 ** ** 1.8 ** ** Relative 1.5 ** **** Entropy 1.3 ** **** (13.6 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel AAGATGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156163695-156163775 41 1.01e-05 GCCCAAATCC AAGATGGC TACCAGGAGG chr5:1799915-1799995 64 1.01e-05 GCCAGGAAGG AAGATGGC GGCGGGGGG chr3:51422405-51422485 54 1.01e-05 GCCCTTACCC AAGATGGC GGCCCACACC chr5:134209942-134210022 33 1.01e-05 GCCCGACTCC AAGATGGC GCCCGCCACA chr19:50316896-50316976 59 1.01e-05 GCCCTGCTCA AAGATGGC GGCACGTCGA chr7:152456676-152456756 58 1.01e-05 GCCAGCACTA AAGATGGC GCGCCGGAGT chrX:30907490-30907570 43 1.01e-05 GCCAGGCACA AAGATGGC GCCGCCGGGT chr18:54318377-54318457 30 1.01e-05 TCCCACAACC AAGATGGC GGCCGTGCAC chrX:135991272-135991352 11 1.01e-05 GCCAGAAATG AAGATGGC AGGGGCGGTA chr7:63560539-63560619 19 1.01e-05 GCCCTCAGCA AAGATGGC GCGGACGGTC chr9:32552265-32552345 72 1.01e-05 GCCCGGCTAA AAGATGGC T chr1:161129247-161129327 64 1.01e-05 GGGACCAACA AAGATGGC GGCGGCCCC chr19:49127376-49127456 6 1.01e-05 TAACA AAGATGGC GACAACGGCG chr3:53916191-53916271 39 1.01e-05 GCCCACAGTC AAGATGGC CGCCGCGGAG chr10:104678242-10467832 29 1.01e-05 ACCCAAAGTA AAGATGGC GGGCGGGCAG chr8:120885976-120886056 14 1.01e-05 GCCCCGAACA AAGATGGC GCGGGAAGCG chr1:161190621-161190701 64 1.01e-05 TCCAGGCTCC AAGATGGC TACCAGGCC chr2:64751249-64751329 47 1.53e-05 GCCCGCACCC AAAATGGC GGTCGGCGCT chrX:47180870-47180950 15 1.53e-05 AACCTCAAAC AAAATGGC GGCGCCCACA chr11:67250465-67250545 56 1.53e-05 GCCCTCAACC AAAATGGC GCTAGCTCGG chr16:30546256-30546336 31 1.53e-05 GCCCTAATCC AAAATGGC CGTTGCGGCT chr6:29617566-29617646 6 1.53e-05 GTTCC AAAATGGC CACCACCGCA chr3:179065366-179065446 44 1.53e-05 GCCCTTAAGG AAAATGGC GCCTGGCATA chrX:47930760-47930840 43 1.53e-05 ACCAGTAACA AAAATGGC GTCATTCCGC chr9:133568979-133569059 55 2.53e-05 GCCAATTGTA AACATGGC CTCTAGGCCG chr17:2689620-2689700 54 2.53e-05 GCCAGAGGGC AACATGGC TGCCATCCTA chr15:67834913-67834993 38 2.53e-05 GCCCTTTTCC AACATGGC GCCGCGGGAG chr1:90460385-90460465 42 2.53e-05 GCCAGGTTCA AACATGGC GGGCCGCAGC chr9:90524761-90524841 28 2.53e-05 GCCAGTAGTC AACATGGC GCTTTGCCAA chr10:104221002-10422108 22 2.53e-05 GCCCGTGACA AACATGGC GGCGGCAGCC chr2:31456867-31456947 14 2.53e-05 CCTGCCCACA AACATGGC GGCGCCCTGC chr18:39535002-39535082 48 3.04e-05 GCCCTTAAGC AAGATGGT GGGCGCCTTG chr20:18488373-18488453 50 3.04e-05 GCCCTGTTCC AAGATGGT GGCAGAGCTT chr6:110012343-110012423 9 3.04e-05 CCTTACCA AAGATGGT GCCCTTCGCT chr19:16308566-16308646 44 3.81e-05 GGGAGCAAGA AACATGGT TACATACGAC chr12:8234672-8234752 53 4.32e-05 TCCAGGTTTC AATATGGC TCCCCGCGTC chr6:33551677-33551757 42 5.35e-05 CTGCAAGAGC AAGAAGGC CTGGCGGAGA chr1:160807443-160807523 39 5.35e-05 GGGCAGTGGA AAGAAGGC ACTTCCGCCC chr16:23739243-23739323 47 5.35e-05 TTAACGTCGG AAGAAGGC CAGAAGTCCT chr11:113930275-11393035 60 7.82e-05 GCCAGCACTA AAGATGGA GAGGCGCCGG chr10:3222733-3222813 45 7.82e-05 tccatctttg aagctggc agtggctggc chr19:49017192-49017272 34 1.51e-04 AAGGGCACAG AACCTGGC GGAAGCAGAG chr1:206629269-206629349 43 1.51e-04 CAGGCCCTGA AACCTGGC CCCGTGCCAG chr20:5730936-5731016 43 1.51e-04 GCCCGCAGTA AGGATGGC TCCGGTGACT chr22:51052294-51052374 4 1.51e-04 CAG AACCTGGC GGATCGCCTG chr17:38244612-38244692 22 1.63e-04 GAGCAGCTCA AGAATGGC GGCCTGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156163695-156163775 1e-05 40_[+2]_32 chr5:1799915-1799995 1e-05 63_[+2]_9 chr3:51422405-51422485 1e-05 53_[+2]_19 chr5:134209942-134210022 1e-05 32_[+2]_40 chr19:50316896-50316976 1e-05 58_[+2]_14 chr7:152456676-152456756 1e-05 57_[+2]_15 chrX:30907490-30907570 1e-05 42_[+2]_30 chr18:54318377-54318457 1e-05 29_[+2]_43 chrX:135991272-135991352 1e-05 10_[+2]_62 chr7:63560539-63560619 1e-05 18_[+2]_54 chr9:32552265-32552345 1e-05 71_[+2]_1 chr1:161129247-161129327 1e-05 63_[+2]_9 chr19:49127376-49127456 1e-05 5_[+2]_67 chr3:53916191-53916271 1e-05 38_[+2]_34 chr10:104678242-10467832 1e-05 28_[+2]_44 chr8:120885976-120886056 1e-05 13_[+2]_59 chr1:161190621-161190701 1e-05 63_[+2]_9 chr2:64751249-64751329 1.5e-05 46_[+2]_26 chrX:47180870-47180950 1.5e-05 14_[+2]_58 chr11:67250465-67250545 1.5e-05 55_[+2]_17 chr16:30546256-30546336 1.5e-05 30_[+2]_42 chr6:29617566-29617646 1.5e-05 5_[+2]_67 chr3:179065366-179065446 1.5e-05 43_[+2]_29 chrX:47930760-47930840 1.5e-05 42_[+2]_30 chr9:133568979-133569059 2.5e-05 54_[+2]_18 chr17:2689620-2689700 2.5e-05 53_[+2]_19 chr15:67834913-67834993 2.5e-05 37_[+2]_35 chr1:90460385-90460465 2.5e-05 41_[+2]_31 chr9:90524761-90524841 2.5e-05 27_[+2]_45 chr10:104221002-10422108 2.5e-05 21_[+2]_51 chr2:31456867-31456947 2.5e-05 13_[+2]_59 chr18:39535002-39535082 3e-05 47_[+2]_25 chr20:18488373-18488453 3e-05 49_[+2]_23 chr6:110012343-110012423 3e-05 8_[+2]_64 chr19:16308566-16308646 3.8e-05 43_[+2]_29 chr12:8234672-8234752 4.3e-05 52_[+2]_20 chr6:33551677-33551757 5.4e-05 41_[+2]_31 chr1:160807443-160807523 5.4e-05 38_[+2]_34 chr16:23739243-23739323 5.4e-05 46_[+2]_26 chr11:113930275-11393035 7.8e-05 59_[+2]_13 chr10:3222733-3222813 7.8e-05 44_[+2]_28 chr19:49017192-49017272 0.00015 33_[+2]_39 chr1:206629269-206629349 0.00015 42_[+2]_30 chr20:5730936-5731016 0.00015 42_[+2]_30 chr22:51052294-51052374 0.00015 3_[+2]_69 chr17:38244612-38244692 0.00016 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGATGGC width=8 seqs=46 chr1:156163695-156163775 ( 41) AAGATGGC 1 chr5:1799915-1799995 ( 64) AAGATGGC 1 chr3:51422405-51422485 ( 54) AAGATGGC 1 chr5:134209942-134210022 ( 33) AAGATGGC 1 chr19:50316896-50316976 ( 59) AAGATGGC 1 chr7:152456676-152456756 ( 58) AAGATGGC 1 chrX:30907490-30907570 ( 43) AAGATGGC 1 chr18:54318377-54318457 ( 30) AAGATGGC 1 chrX:135991272-135991352 ( 11) AAGATGGC 1 chr7:63560539-63560619 ( 19) AAGATGGC 1 chr9:32552265-32552345 ( 72) AAGATGGC 1 chr1:161129247-161129327 ( 64) AAGATGGC 1 chr19:49127376-49127456 ( 6) AAGATGGC 1 chr3:53916191-53916271 ( 39) AAGATGGC 1 chr10:104678242-10467832 ( 29) AAGATGGC 1 chr8:120885976-120886056 ( 14) AAGATGGC 1 chr1:161190621-161190701 ( 64) AAGATGGC 1 chr2:64751249-64751329 ( 47) AAAATGGC 1 chrX:47180870-47180950 ( 15) AAAATGGC 1 chr11:67250465-67250545 ( 56) AAAATGGC 1 chr16:30546256-30546336 ( 31) AAAATGGC 1 chr6:29617566-29617646 ( 6) AAAATGGC 1 chr3:179065366-179065446 ( 44) AAAATGGC 1 chrX:47930760-47930840 ( 43) AAAATGGC 1 chr9:133568979-133569059 ( 55) AACATGGC 1 chr17:2689620-2689700 ( 54) AACATGGC 1 chr15:67834913-67834993 ( 38) AACATGGC 1 chr1:90460385-90460465 ( 42) AACATGGC 1 chr9:90524761-90524841 ( 28) AACATGGC 1 chr10:104221002-10422108 ( 22) AACATGGC 1 chr2:31456867-31456947 ( 14) AACATGGC 1 chr18:39535002-39535082 ( 48) AAGATGGT 1 chr20:18488373-18488453 ( 50) AAGATGGT 1 chr6:110012343-110012423 ( 9) AAGATGGT 1 chr19:16308566-16308646 ( 44) AACATGGT 1 chr12:8234672-8234752 ( 53) AATATGGC 1 chr6:33551677-33551757 ( 42) AAGAAGGC 1 chr1:160807443-160807523 ( 39) AAGAAGGC 1 chr16:23739243-23739323 ( 47) AAGAAGGC 1 chr11:113930275-11393035 ( 60) AAGATGGA 1 chr10:3222733-3222813 ( 45) AAGCTGGC 1 chr19:49017192-49017272 ( 34) AACCTGGC 1 chr1:206629269-206629349 ( 43) AACCTGGC 1 chr20:5730936-5731016 ( 43) AGGATGGC 1 chr22:51052294-51052374 ( 4) AACCTGGC 1 chr17:38244612-38244692 ( 22) AGAATGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.69444 E= 1.4e-035 255 -1217 -1217 -1217 248 -1217 -293 -1217 2 -46 77 -294 242 -192 -1217 -1217 -139 -1217 -1217 248 -1217 -1217 159 -1217 -1217 -1217 159 -1217 -297 143 -1217 -94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.4e-035 1.000000 0.000000 0.000000 0.000000 0.956522 0.000000 0.043478 0.000000 0.173913 0.239130 0.565217 0.021739 0.913043 0.086957 0.000000 0.000000 0.065217 0.000000 0.000000 0.934783 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.021739 0.891304 0.000000 0.086957 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 regular expression -------------------------------------------------------------------------------- AA[GC]ATGGC -------------------------------------------------------------------------------- Time 8.76 secs. ******************************************************************************** ******************************************************************************** MOTIF RCTTCCGC MEME-3 width = 8 sites = 54 llr = 459 E-value = 6.6e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCTTCCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5::::::: pos.-specific C :a::aa:6 probability G 4:::::92 matrix T 1:aa::11 bits 2.6 ** 2.3 ** 2.1 ** 1.8 ** Relative 1.5 ***** Entropy 1.3 ****** (12.3 bits) 1.0 ****** 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel ACTTCCGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:127415555-127415635 22 1.88e-05 GAGAGGACCC ACTTCCGC CAGGCCGGCC chr17:18218279-18218359 24 1.88e-05 TTGGCGTGGA ACTTCCGC CCGCCTTCTC chr14:24664894-24664974 9 1.88e-05 GTCTTACC ACTTCCGC CCTCACCGGC chr15:90777131-90777211 43 1.88e-05 CAACTTTCTC ACTTCCGC CCTTGGGCCG chr13:38923655-38923735 35 1.88e-05 CCATACCCTT ACTTCCGC CCCAACCTGC chr1:59281029-59281109 22 1.88e-05 AAAGCCACAG ACTTCCGC CCACAGGTCG chr9:104296032-104296112 8 1.88e-05 GTACGTC ACTTCCGC CCGGCGGGGT chr9:5437923-5438003 43 1.88e-05 AAGAGCCGGC ACTTCCGC CAGAAGCCGG chr1:160807443-160807523 47 1.88e-05 GAAAGAAGGC ACTTCCGC CCCACTTCAC chr14:35008869-35008949 56 1.88e-05 CCCTGACGCC ACTTCCGC CTGAACGTCC chr18:55297468-55297548 66 1.88e-05 TCTCCGGGCC ACTTCCGC GTTTCTG chr12:110318275-11031835 35 1.88e-05 cagcgtcgcc acttccgc cCGCACGGCG chr17:3627615-3627695 16 1.88e-05 GCCCGCTCCG ACTTCCGC CCTTCCCCAG chr5:126409151-126409231 38 1.88e-05 TGCGCCGGGC ACTTCCGC CCGCACCCAC chr22:51052294-51052374 56 1.88e-05 GACGCCtcca acttccgc caatctagcc chr3:57583374-57583454 30 6.47e-05 AGGGTGAGAC GCTTCCGC CCGGATGAAG chr1:43282974-43283054 61 6.47e-05 GCGCCAGGAG GCTTCCGC CCGCAGGAGC chr14:64010281-64010361 40 6.47e-05 TGCAGCCGCC GCTTCCGC CCGGCAGTGG chr14:69445443-69445523 48 6.47e-05 GGGCGCTCCC GCTTCCGC CAGGCGCCTG chr20:43538673-43538753 35 6.47e-05 AGGAAGGAGG GCTTCCGC CCGGGTGAGC chr6:137143653-137143733 49 6.47e-05 CGGGGCCCAC ACTTCCGT CCGGTCTGCC chr16:838307-838387 67 6.47e-05 GCCTGGCAGC GCTTCCGC CCTGCA chr12:6982434-6982514 67 6.47e-05 ACCGCCGGCC GCTTCCGC CCCCAG chr2:101179337-101179417 40 6.47e-05 CAAGGCTGTT GCTTCCGC CCTTACTCCC chr8:33370623-33370703 53 6.47e-05 CGCAAGGCTA GCTTCCGC CAGTACTGCC chrX:47696146-47696226 18 6.47e-05 CAAAGCACCC ACTTCCGT AACTTCTCCA chr16:89181824-89181904 34 6.47e-05 cttccgcCCG GCTTCCGC CCACAGTCAA chr10:71078012-71078092 56 6.47e-05 CCCGGCTCCC GCTTCCGC CCGCTTTCCA chr10:119806360-11980644 53 8.36e-05 CTGCGGCGGC ACTTCCGG GTTGGCCTTC chr20:388865-388945 63 8.36e-05 GTCCCGCCCC ACTTCCGG GGCCGCCACT chr3:119217202-119217282 69 8.36e-05 CAGCCAACTC ACTTCCGG GGGT chr2:43447164-43447244 10 8.36e-05 CGAGACCCA ACTTCCGG TCTCAAGAAA chr9:26892805-26892885 16 8.36e-05 GTTATGCGTC ACTTCCGG CCGTGGCACA chr19:16308566-16308646 14 8.36e-05 ACCGGGCCTT ACTTCCGG GATGCTTCTG chr19:59070452-59070532 6 8.36e-05 AGGTC ACTTCCGG CGACTTTCGC chr12:133066688-13306676 15 9.31e-05 ggcggcccTC ACTTCCTC TGGCGAGCGC chrX:1710399-1710479 63 1.11e-04 CCGCGCGGCC TCTTCCGC GAGCCCGCGC chr2:160143364-160143444 30 1.11e-04 GCATGCGCGC TCTTCCGC CCGGACTGCG chr16:1020894-1020974 29 1.11e-04 GAGTACCCAG TCTTCCGC CTCCTCAGCG chr3:52018069-52018149 55 1.11e-04 TCGGTGACGC TCTTCCGC CAGTACCTGC chr3:51422405-51422485 72 1.30e-04 GGCCCACACC GCTTCCGT C chrX:30907490-30907570 10 1.30e-04 GGCTTCAGG GCTTCCGT CGGGCGCCGT chr3:64009134-64009214 66 1.67e-04 CTGCGGCCCG GCTTCCGG TCCCGTC chr19:53696592-53696672 6 1.67e-04 GATCT GCTTCCGG GTTTGCAAGA chr3:179065366-179065446 67 1.67e-04 GCATAGATGC GCTTCCGG CCACGG chr10:112678988-11267906 37 1.76e-04 TTCAACAGTA ACTTCCGA TCGGGGAGTT chr14:64805616-64805696 63 1.99e-04 CCCCGCCCTT ACTTCCTT TTCCCTTAAG chr20:5730936-5731016 58 1.99e-04 GGCTCCGGTG ACTTCCTT CGAACCTCAC chr1:154933921-154934001 41 1.99e-04 GCCTTGCCCT GCTTCCTC CCGGTGCTGG chr6:110012343-110012423 24 1.99e-04 GGTGCCCTTC GCTTCCTC TCTCGGCAGC chr20:43991606-43991686 38 2.18e-04 TTCGTTCCTC TCTTCCGT TTGCCTTCAC chr2:219827761-219827841 65 2.37e-04 CTCAACTAGG TCTTCCGG ATAATTTG chr20:34042653-34042733 65 2.65e-04 TTTCTTTTCT GCTTCCGA AATGTCCC chrX:63615367-63615447 64 2.92e-04 CCGCCATCTT GCTTCCTG GCAAGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:127415555-127415635 1.9e-05 21_[+3]_51 chr17:18218279-18218359 1.9e-05 23_[+3]_49 chr14:24664894-24664974 1.9e-05 8_[+3]_64 chr15:90777131-90777211 1.9e-05 42_[+3]_30 chr13:38923655-38923735 1.9e-05 34_[+3]_38 chr1:59281029-59281109 1.9e-05 21_[+3]_51 chr9:104296032-104296112 1.9e-05 7_[+3]_65 chr9:5437923-5438003 1.9e-05 42_[+3]_30 chr1:160807443-160807523 1.9e-05 46_[+3]_26 chr14:35008869-35008949 1.9e-05 55_[+3]_17 chr18:55297468-55297548 1.9e-05 65_[+3]_7 chr12:110318275-11031835 1.9e-05 34_[+3]_38 chr17:3627615-3627695 1.9e-05 15_[+3]_57 chr5:126409151-126409231 1.9e-05 37_[+3]_35 chr22:51052294-51052374 1.9e-05 55_[+3]_17 chr3:57583374-57583454 6.5e-05 29_[+3]_43 chr1:43282974-43283054 6.5e-05 60_[+3]_12 chr14:64010281-64010361 6.5e-05 39_[+3]_33 chr14:69445443-69445523 6.5e-05 47_[+3]_25 chr20:43538673-43538753 6.5e-05 34_[+3]_38 chr6:137143653-137143733 6.5e-05 48_[+3]_24 chr16:838307-838387 6.5e-05 66_[+3]_6 chr12:6982434-6982514 6.5e-05 66_[+3]_6 chr2:101179337-101179417 6.5e-05 39_[+3]_33 chr8:33370623-33370703 6.5e-05 52_[+3]_20 chrX:47696146-47696226 6.5e-05 17_[+3]_55 chr16:89181824-89181904 6.5e-05 33_[+3]_39 chr10:71078012-71078092 6.5e-05 55_[+3]_17 chr10:119806360-11980644 8.4e-05 52_[+3]_20 chr20:388865-388945 8.4e-05 62_[+3]_10 chr3:119217202-119217282 8.4e-05 68_[+3]_4 chr2:43447164-43447244 8.4e-05 9_[+3]_63 chr9:26892805-26892885 8.4e-05 15_[+3]_57 chr19:16308566-16308646 8.4e-05 13_[+3]_59 chr19:59070452-59070532 8.4e-05 5_[+3]_67 chr12:133066688-13306676 9.3e-05 14_[+3]_58 chrX:1710399-1710479 0.00011 62_[+3]_10 chr2:160143364-160143444 0.00011 29_[+3]_43 chr16:1020894-1020974 0.00011 28_[+3]_44 chr3:52018069-52018149 0.00011 54_[+3]_18 chr3:51422405-51422485 0.00013 71_[+3]_1 chrX:30907490-30907570 0.00013 9_[+3]_63 chr3:64009134-64009214 0.00017 65_[+3]_7 chr19:53696592-53696672 0.00017 5_[+3]_67 chr3:179065366-179065446 0.00017 66_[+3]_6 chr10:112678988-11267906 0.00018 36_[+3]_36 chr14:64805616-64805696 0.0002 62_[+3]_10 chr20:5730936-5731016 0.0002 57_[+3]_15 chr1:154933921-154934001 0.0002 40_[+3]_32 chr6:110012343-110012423 0.0002 23_[+3]_49 chr20:43991606-43991686 0.00022 37_[+3]_35 chr2:219827761-219827841 0.00024 64_[+3]_8 chr20:34042653-34042733 0.00026 64_[+3]_8 chrX:63615367-63615447 0.00029 63_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCTTCCGC width=8 seqs=54 chr2:127415555-127415635 ( 22) ACTTCCGC 1 chr17:18218279-18218359 ( 24) ACTTCCGC 1 chr14:24664894-24664974 ( 9) ACTTCCGC 1 chr15:90777131-90777211 ( 43) ACTTCCGC 1 chr13:38923655-38923735 ( 35) ACTTCCGC 1 chr1:59281029-59281109 ( 22) ACTTCCGC 1 chr9:104296032-104296112 ( 8) ACTTCCGC 1 chr9:5437923-5438003 ( 43) ACTTCCGC 1 chr1:160807443-160807523 ( 47) ACTTCCGC 1 chr14:35008869-35008949 ( 56) ACTTCCGC 1 chr18:55297468-55297548 ( 66) ACTTCCGC 1 chr12:110318275-11031835 ( 35) ACTTCCGC 1 chr17:3627615-3627695 ( 16) ACTTCCGC 1 chr5:126409151-126409231 ( 38) ACTTCCGC 1 chr22:51052294-51052374 ( 56) ACTTCCGC 1 chr3:57583374-57583454 ( 30) GCTTCCGC 1 chr1:43282974-43283054 ( 61) GCTTCCGC 1 chr14:64010281-64010361 ( 40) GCTTCCGC 1 chr14:69445443-69445523 ( 48) GCTTCCGC 1 chr20:43538673-43538753 ( 35) GCTTCCGC 1 chr6:137143653-137143733 ( 49) ACTTCCGT 1 chr16:838307-838387 ( 67) GCTTCCGC 1 chr12:6982434-6982514 ( 67) GCTTCCGC 1 chr2:101179337-101179417 ( 40) GCTTCCGC 1 chr8:33370623-33370703 ( 53) GCTTCCGC 1 chrX:47696146-47696226 ( 18) ACTTCCGT 1 chr16:89181824-89181904 ( 34) GCTTCCGC 1 chr10:71078012-71078092 ( 56) GCTTCCGC 1 chr10:119806360-11980644 ( 53) ACTTCCGG 1 chr20:388865-388945 ( 63) ACTTCCGG 1 chr3:119217202-119217282 ( 69) ACTTCCGG 1 chr2:43447164-43447244 ( 10) ACTTCCGG 1 chr9:26892805-26892885 ( 16) ACTTCCGG 1 chr19:16308566-16308646 ( 14) ACTTCCGG 1 chr19:59070452-59070532 ( 6) ACTTCCGG 1 chr12:133066688-13306676 ( 15) ACTTCCTC 1 chrX:1710399-1710479 ( 63) TCTTCCGC 1 chr2:160143364-160143444 ( 30) TCTTCCGC 1 chr16:1020894-1020974 ( 29) TCTTCCGC 1 chr3:52018069-52018149 ( 55) TCTTCCGC 1 chr3:51422405-51422485 ( 72) GCTTCCGT 1 chrX:30907490-30907570 ( 10) GCTTCCGT 1 chr3:64009134-64009214 ( 66) GCTTCCGG 1 chr19:53696592-53696672 ( 6) GCTTCCGG 1 chr3:179065366-179065446 ( 67) GCTTCCGG 1 chr10:112678988-11267906 ( 37) ACTTCCGA 1 chr14:64805616-64805696 ( 63) ACTTCCTT 1 chr20:5730936-5731016 ( 58) ACTTCCTT 1 chr1:154933921-154934001 ( 41) GCTTCCTC 1 chr6:110012343-110012423 ( 24) GCTTCCTC 1 chr20:43991606-43991686 ( 38) TCTTCCGT 1 chr2:219827761-219827841 ( 65) TCTTCCGG 1 chr20:34042653-34042733 ( 65) GCTTCCGA 1 chrX:63615367-63615447 ( 64) GCTTCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 6.6e-025 160 -1240 16 -59 -1240 160 -1240 -1240 -1240 -1240 -1240 258 -1240 -1240 -1240 258 -1240 160 -1240 -1240 -1240 160 -1240 -1240 -1240 -1240 142 -59 -221 89 -58 -37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 6.6e-025 0.518519 0.000000 0.370370 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.037037 0.611111 0.222222 0.129630 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGC MEME-3 regular expression -------------------------------------------------------------------------------- [AG]CTTCCG[CG] -------------------------------------------------------------------------------- Time 12.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGAA MEME-4 width = 8 sites = 27 llr = 254 E-value = 1.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C :::a:::: probability G 7aa:8a:: matrix T 3:::2::: bits 2.6 ** 2.3 ** 2.1 ** 1.8 ** Relative 1.5 *** *** Entropy 1.3 *** *** (13.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCGGAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:157129599-157129679 54 3.89e-05 CGTCAGGGTC GGGCGGAA GTTGACGCCG chr19:54693886-54693966 33 3.89e-05 GCCCTCAAAG GGGCGGAA CCCCGAGGGC chr18:43753963-43754043 30 3.89e-05 CTGTGTTTCC GGGCGGAA GTGAGGCGCC chr16:72042441-72042521 12 3.89e-05 GGGAGAGGGC GGGCGGAA GAGGCGTGGC chr17:260060-260140 29 3.89e-05 GTGGGGCACC GGGCGGAA GCGTCCTGAC chr7:149411872-149411952 49 3.89e-05 CGGGGGCTCC GGGCGGAA ACGGCACCAC chr11:63993583-63993663 49 3.89e-05 CCGACGGACC GGGCGGAA GCGTCGGGGC chr12:6982434-6982514 24 3.89e-05 TGAAGGAGCC GGGCGGAA AGAAGCCGAG chr11:44341327-44341407 25 3.89e-05 ACCGATCTAT GGGCGGAA GCGCAGCGCA chr19:39897310-39897390 28 3.89e-05 GCCCAGGGCC GGGCGGAA GGGAACCAGT chr11:70049292-70049372 33 3.89e-05 CCGCCAGCCA GGGCGGAA ACGGCTGCGG chr1:247373749-247373829 24 3.89e-05 GGGACGCGCC GGGCGGAA GTCGAGCGCA chr9:27573756-27573836 48 3.89e-05 TCTTTTACGT GGGCGGAA CTTGTCGCTG chr10:16859681-16859761 42 3.89e-05 AGAGGGCTGT GGGCGGAA GTGGGGAAGT chr9:32552265-32552345 9 3.89e-05 CCAACTCC GGGCGGAA GAGGCCAGCG chr7:100860937-100861017 20 3.89e-05 CAGAGAGTGC GGGCGGAA GACGGGGAGA chr12:133066688-13306676 37 3.89e-05 GAGCGCAGCC GGGCGGAA GTGCGTCAGT chr3:51533584-51533664 34 3.89e-05 CCCCCACTCC GGGCGGAA GAGTTACTCT chr2:36824895-36824975 22 3.89e-05 TCCCGCGTCC GGGCGGAA GGAGGGCGCA chr20:34050306-34050386 1 5.85e-05 . TGGCGGAA GCTGAAGAAC chr14:24664894-24664974 40 5.85e-05 GACCTCAGCC TGGCGGAA AGCTCCTTGC chr17:40831702-40831782 2 5.85e-05 C TGGCGGAA GCGCAGGCCC chr16:29827290-29827370 32 7.81e-05 TCTTTACTGT GGGCTGAA GCCTGTGCGC chr19:49017192-49017272 18 8.79e-05 GCTGCCCGGG TGGCTGAA GGGCACAGAA chr1:245331491-245331571 24 8.79e-05 AGTGGGTTTC TGGCTGAA GCTGTTCTGT chr2:62733014-62733094 41 8.79e-05 TGCGGAGAAC TGGCTGAA GGCGACATCG chr14:21458037-21458117 21 8.79e-05 CTCTTCTCGT TGGCTGAA ACTGTCGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:157129599-157129679 3.9e-05 53_[+4]_19 chr19:54693886-54693966 3.9e-05 32_[+4]_40 chr18:43753963-43754043 3.9e-05 29_[+4]_43 chr16:72042441-72042521 3.9e-05 11_[+4]_61 chr17:260060-260140 3.9e-05 28_[+4]_44 chr7:149411872-149411952 3.9e-05 48_[+4]_24 chr11:63993583-63993663 3.9e-05 48_[+4]_24 chr12:6982434-6982514 3.9e-05 23_[+4]_49 chr11:44341327-44341407 3.9e-05 24_[+4]_48 chr19:39897310-39897390 3.9e-05 27_[+4]_45 chr11:70049292-70049372 3.9e-05 32_[+4]_40 chr1:247373749-247373829 3.9e-05 23_[+4]_49 chr9:27573756-27573836 3.9e-05 47_[+4]_25 chr10:16859681-16859761 3.9e-05 41_[+4]_31 chr9:32552265-32552345 3.9e-05 8_[+4]_64 chr7:100860937-100861017 3.9e-05 19_[+4]_53 chr12:133066688-13306676 3.9e-05 36_[+4]_36 chr3:51533584-51533664 3.9e-05 33_[+4]_39 chr2:36824895-36824975 3.9e-05 21_[+4]_51 chr20:34050306-34050386 5.9e-05 [+4]_72 chr14:24664894-24664974 5.9e-05 39_[+4]_33 chr17:40831702-40831782 5.9e-05 1_[+4]_71 chr16:29827290-29827370 7.8e-05 31_[+4]_41 chr19:49017192-49017272 8.8e-05 17_[+4]_55 chr1:245331491-245331571 8.8e-05 23_[+4]_49 chr2:62733014-62733094 8.8e-05 40_[+4]_32 chr14:21458037-21458117 8.8e-05 20_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGAA width=8 seqs=27 chr7:157129599-157129679 ( 54) GGGCGGAA 1 chr19:54693886-54693966 ( 33) GGGCGGAA 1 chr18:43753963-43754043 ( 30) GGGCGGAA 1 chr16:72042441-72042521 ( 12) GGGCGGAA 1 chr17:260060-260140 ( 29) GGGCGGAA 1 chr7:149411872-149411952 ( 49) GGGCGGAA 1 chr11:63993583-63993663 ( 49) GGGCGGAA 1 chr12:6982434-6982514 ( 24) GGGCGGAA 1 chr11:44341327-44341407 ( 25) GGGCGGAA 1 chr19:39897310-39897390 ( 28) GGGCGGAA 1 chr11:70049292-70049372 ( 33) GGGCGGAA 1 chr1:247373749-247373829 ( 24) GGGCGGAA 1 chr9:27573756-27573836 ( 48) GGGCGGAA 1 chr10:16859681-16859761 ( 42) GGGCGGAA 1 chr9:32552265-32552345 ( 9) GGGCGGAA 1 chr7:100860937-100861017 ( 20) GGGCGGAA 1 chr12:133066688-13306676 ( 37) GGGCGGAA 1 chr3:51533584-51533664 ( 34) GGGCGGAA 1 chr2:36824895-36824975 ( 22) GGGCGGAA 1 chr20:34050306-34050386 ( 1) TGGCGGAA 1 chr14:24664894-24664974 ( 40) TGGCGGAA 1 chr17:40831702-40831782 ( 2) TGGCGGAA 1 chr16:29827290-29827370 ( 32) GGGCTGAA 1 chr19:49017192-49017272 ( 18) TGGCTGAA 1 chr1:245331491-245331571 ( 24) TGGCTGAA 1 chr2:62733014-62733094 ( 41) TGGCTGAA 1 chr14:21458037-21458117 ( 21) TGGCTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.19896 E= 1.5e-007 -1140 -1140 116 63 -1140 -1140 159 -1140 -1140 -1140 159 -1140 -1140 160 -1140 -1140 -1140 -1140 130 15 -1140 -1140 159 -1140 255 -1140 -1140 -1140 255 -1140 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.5e-007 0.000000 0.000000 0.740741 0.259259 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.814815 0.185185 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAA MEME-4 regular expression -------------------------------------------------------------------------------- [GT]GGCGGAA -------------------------------------------------------------------------------- Time 16.06 secs. ******************************************************************************** ******************************************************************************** MOTIF HCTGCGCA MEME-5 width = 8 sites = 42 llr = 342 E-value = 4.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif HCTGCGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 41:::::a pos.-specific C 48::a2a: probability G :::a:7:: matrix T 31a::::: bits 2.6 * 2.3 * * 2.1 * * 1.8 * * Relative 1.5 *** ** Entropy 1.3 *** ** (11.8 bits) 1.0 *** ** 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ACTGCGCA consensus C C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCTGCGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:129299789-129299869 42 1.93e-05 CCGGAGGCCT ACTGCGCA GGCGTAGCAC chr7:157129599-157129679 29 1.93e-05 GGCAGTGGAA ACTGCGCA TGCGCGGCGT chr16:29973250-29973330 63 1.93e-05 CCGCGTGGCC ACTGCGCA TGCGGAcccg chr17:1359621-1359701 25 1.93e-05 TCGCGCGCGC ACTGCGCA TGCGGATTCA chr3:178789604-178789684 48 1.93e-05 CGGCGTCGCC ACTGCGCA TGTGCTTGGC chr16:72042441-72042521 37 1.93e-05 GGCCGCCGCT ACTGCGCA CGTGCACCCA chr11:119076551-11907663 52 1.93e-05 GTTTCTGGCT ACTGCGCA GACTCCACCT chr17:260060-260140 45 1.93e-05 AAGCGTCCTG ACTGCGCA GGCGCAGCAG chr19:17622299-17622379 59 1.93e-05 CACTTGCCTC ACTGCGCA TGTGCCAAAG chr5:1799915-1799995 27 3.82e-05 GACCCCTGCG TCTGCGCA CTGGCACGCG chr17:57970364-57970444 20 3.82e-05 TGCCGATAGT TCTGCGCA TGTCCACTGC chr20:43991606-43991686 63 3.82e-05 CACTCTTCCT TCTGCGCA TGTGCTCAGT chr6:146285495-146285575 69 3.82e-05 ATGAGTCTCT TCTGCGCA AGTT chr1:28995217-28995297 72 3.82e-05 CGTGGCGGCC TCTGCGCA T chrX:47863420-47863500 13 3.82e-05 AGGGGTCGGT TCTGCGCA CGCTCAGTGG chr2:113012702-113012782 65 3.82e-05 TCGCCTCGGC TCTGCGCA GGCGCCGC chr4:48832925-48833005 17 7.56e-05 GCCGCTGTCG CCTGCGCA GTCGCAGTGC chr18:47807941-47808021 3 7.56e-05 CA CCTGCGCA CTATTGCCTC chr19:16308566-16308646 70 7.56e-05 ACGTAATGCG CCTGCGCA CAG chr1:6296014-6296094 23 7.56e-05 GCCGGCTGCG CCTGCGCA CTGTGCCGCC chr17:16557125-16557205 59 7.56e-05 GGGCATTGCG CCTGCGCA GCCGGAGCGT chr19:48867181-48867261 4 7.56e-05 CCT CCTGCGCA TGTGCAGGAG chr19:37701466-37701546 6 8.54e-05 TTGAT ATTGCGCA TGCTCTAAAT chr1:156163695-156163775 28 1.05e-04 AGGCGTGGCT ACTGCCCA AATCCAAGAT chrX:30907490-30907570 61 1.05e-04 GCCGCCGGGT ACTGCCCA GGGCGATCTC chr10:104678242-10467832 58 1.05e-04 CAGCCGCCGC ACTGCCCA CTTGGAAGAT chrX:47696146-47696226 72 1.14e-04 CAAAGGTGGT TTTGCGCA C chr6:33551677-33551757 72 1.33e-04 TGAAGTCAGT TCTGCCCA T chr3:179065366-179065446 8 1.33e-04 AGCAGTC TCTGCCCA CAACAAACCT chr19:42722005-42722085 16 1.72e-04 GAGTGCTGCG CTTGCGCA GAGCGAGAGC chr7:100860937-100861017 4 2.09e-04 AGC CCTGCCCA GAGAGTGCGG chr2:31456867-31456947 4 2.09e-04 GCG CCTGCCCA CAAACATGGC chr7:37609852-37609932 8 2.38e-04 ctgtccg catgcgca gtggcttgcc chrX:48456461-48456541 11 2.38e-04 TACTGTGGTG CATGCGCA ATGGCGATAA chr19:31187559-31187639 8 2.38e-04 TGTAGGG CATGCGCA ATGGCGGGGG chr21:43430077-43430157 9 2.38e-04 GAATGGAG CATGCGCA TTCGCGAGGG chr3:178865802-178865882 41 2.47e-04 TGTTACCCTA TTTGCCCA CTCCCTGCTC chr18:54318377-54318457 50 2.95e-04 CCGTGCACTC CTTGCCCA CAGCTGGCCT chr22:50311985-50312065 26 2.95e-04 ATCTAAAGTC CTTGCCCA AATCTAAAGT chr2:127415555-127415635 43 3.24e-04 GCCGGCCTGC TCTGCTCA GCTCAGCTGG chr9:140135229-140135309 47 3.24e-04 CAGAGCCAAG ACTGCGCT TGCCCGAGGC chr1:16302090-16302170 16 3.24e-04 CTGCCCCGGC ACTGCGCT CCCTCGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCTGCGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:129299789-129299869 1.9e-05 41_[+5]_31 chr7:157129599-157129679 1.9e-05 28_[+5]_44 chr16:29973250-29973330 1.9e-05 62_[+5]_10 chr17:1359621-1359701 1.9e-05 24_[+5]_48 chr3:178789604-178789684 1.9e-05 47_[+5]_25 chr16:72042441-72042521 1.9e-05 36_[+5]_36 chr11:119076551-11907663 1.9e-05 51_[+5]_21 chr17:260060-260140 1.9e-05 44_[+5]_28 chr19:17622299-17622379 1.9e-05 58_[+5]_14 chr5:1799915-1799995 3.8e-05 26_[+5]_46 chr17:57970364-57970444 3.8e-05 19_[+5]_53 chr20:43991606-43991686 3.8e-05 62_[+5]_10 chr6:146285495-146285575 3.8e-05 68_[+5]_4 chr1:28995217-28995297 3.8e-05 71_[+5]_1 chrX:47863420-47863500 3.8e-05 12_[+5]_60 chr2:113012702-113012782 3.8e-05 64_[+5]_8 chr4:48832925-48833005 7.6e-05 16_[+5]_56 chr18:47807941-47808021 7.6e-05 2_[+5]_70 chr19:16308566-16308646 7.6e-05 69_[+5]_3 chr1:6296014-6296094 7.6e-05 22_[+5]_50 chr17:16557125-16557205 7.6e-05 58_[+5]_14 chr19:48867181-48867261 7.6e-05 3_[+5]_69 chr19:37701466-37701546 8.5e-05 5_[+5]_67 chr1:156163695-156163775 0.0001 27_[+5]_45 chrX:30907490-30907570 0.0001 60_[+5]_12 chr10:104678242-10467832 0.0001 57_[+5]_15 chrX:47696146-47696226 0.00011 71_[+5]_1 chr6:33551677-33551757 0.00013 71_[+5]_1 chr3:179065366-179065446 0.00013 7_[+5]_65 chr19:42722005-42722085 0.00017 15_[+5]_57 chr7:100860937-100861017 0.00021 3_[+5]_69 chr2:31456867-31456947 0.00021 3_[+5]_69 chr7:37609852-37609932 0.00024 7_[+5]_65 chrX:48456461-48456541 0.00024 10_[+5]_62 chr19:31187559-31187639 0.00024 7_[+5]_65 chr21:43430077-43430157 0.00024 8_[+5]_64 chr3:178865802-178865882 0.00025 40_[+5]_32 chr18:54318377-54318457 0.0003 49_[+5]_23 chr22:50311985-50312065 0.0003 25_[+5]_47 chr2:127415555-127415635 0.00032 42_[+5]_30 chr9:140135229-140135309 0.00032 46_[+5]_26 chr1:16302090-16302170 0.00032 15_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCTGCGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HCTGCGCA width=8 seqs=42 chrX:129299789-129299869 ( 42) ACTGCGCA 1 chr7:157129599-157129679 ( 29) ACTGCGCA 1 chr16:29973250-29973330 ( 63) ACTGCGCA 1 chr17:1359621-1359701 ( 25) ACTGCGCA 1 chr3:178789604-178789684 ( 48) ACTGCGCA 1 chr16:72042441-72042521 ( 37) ACTGCGCA 1 chr11:119076551-11907663 ( 52) ACTGCGCA 1 chr17:260060-260140 ( 45) ACTGCGCA 1 chr19:17622299-17622379 ( 59) ACTGCGCA 1 chr5:1799915-1799995 ( 27) TCTGCGCA 1 chr17:57970364-57970444 ( 20) TCTGCGCA 1 chr20:43991606-43991686 ( 63) TCTGCGCA 1 chr6:146285495-146285575 ( 69) TCTGCGCA 1 chr1:28995217-28995297 ( 72) TCTGCGCA 1 chrX:47863420-47863500 ( 13) TCTGCGCA 1 chr2:113012702-113012782 ( 65) TCTGCGCA 1 chr4:48832925-48833005 ( 17) CCTGCGCA 1 chr18:47807941-47808021 ( 3) CCTGCGCA 1 chr19:16308566-16308646 ( 70) CCTGCGCA 1 chr1:6296014-6296094 ( 23) CCTGCGCA 1 chr17:16557125-16557205 ( 59) CCTGCGCA 1 chr19:48867181-48867261 ( 4) CCTGCGCA 1 chr19:37701466-37701546 ( 6) ATTGCGCA 1 chr1:156163695-156163775 ( 28) ACTGCCCA 1 chrX:30907490-30907570 ( 61) ACTGCCCA 1 chr10:104678242-10467832 ( 58) ACTGCCCA 1 chrX:47696146-47696226 ( 72) TTTGCGCA 1 chr6:33551677-33551757 ( 72) TCTGCCCA 1 chr3:179065366-179065446 ( 8) TCTGCCCA 1 chr19:42722005-42722085 ( 16) CTTGCGCA 1 chr7:100860937-100861017 ( 4) CCTGCCCA 1 chr2:31456867-31456947 ( 4) CCTGCCCA 1 chr7:37609852-37609932 ( 8) CATGCGCA 1 chrX:48456461-48456541 ( 11) CATGCGCA 1 chr19:31187559-31187639 ( 8) CATGCGCA 1 chr21:43430077-43430157 ( 9) CATGCGCA 1 chr3:178865802-178865882 ( 41) TTTGCCCA 1 chr18:54318377-54318457 ( 50) CTTGCCCA 1 chr22:50311985-50312065 ( 26) CTTGCCCA 1 chr2:127415555-127415635 ( 43) TCTGCTCA 1 chr9:140135229-140135309 ( 47) ACTGCGCT 1 chr1:16302090-16302170 ( 16) ACTGCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCTGCGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.06546 E= 4.2e-005 106 11 -1204 77 -84 121 -1204 -23 -1204 -1204 -1204 258 -1204 -1204 159 -1204 -1204 160 -1204 -1204 -1204 -47 115 -281 -1204 160 -1204 -1204 248 -1204 -1204 -181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCTGCGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 4.2e-005 0.357143 0.357143 0.000000 0.285714 0.095238 0.761905 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.238095 0.738095 0.023810 0.000000 1.000000 0.000000 0.000000 0.952381 0.000000 0.000000 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCTGCGCA MEME-5 regular expression -------------------------------------------------------------------------------- [ACT]CTGC[GC]CA -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:87276335-87276415 1.59e-01 80 chr2:31456867-31456947 2.97e-03 13_[+2(2.53e-05)]_59 chr20:3996304-3996384 2.90e-01 80 chr19:48867181-48867261 2.66e-02 3_[+5(7.56e-05)]_69 chr15:36871746-36871826 3.33e-02 80 chr20:10199455-10199535 2.42e-02 19_[+1(9.50e-06)]_53 chr1:161190621-161190701 1.63e-02 63_[+2(1.01e-05)]_9 chr8:120885976-120886056 4.72e-02 13_[+2(1.01e-05)]_59 chr10:3222733-3222813 2.54e-04 34_[+1(2.87e-05)]_2_[+2(7.82e-05)]_\ 28 chrX:63615367-63615447 2.79e-03 55_[+1(9.50e-06)]_17 chr19:17622299-17622379 6.44e-02 58_[+5(1.93e-05)]_14 chr10:71078012-71078092 1.14e-03 55_[+3(6.47e-05)]_17 chr14:103583094-10358317 2.17e-01 80 chr3:52018069-52018149 8.55e-02 80 chr21:47063036-47063116 5.54e-02 80 chr10:104221002-10422108 5.30e-02 21_[+2(2.53e-05)]_51 chr1:38955630-38955710 6.54e-01 80 chr6:110012343-110012423 5.28e-03 8_[+2(3.04e-05)]_64 chr11:63684614-63684694 6.58e-01 80 chr22:51052294-51052374 5.83e-05 55_[+3(1.88e-05)]_17 chr9:90524761-90524841 2.19e-02 27_[+2(2.53e-05)]_45 chr21:43430077-43430157 3.09e-01 80 chr17:38244612-38244692 7.49e-04 50_[+1(9.50e-06)]_22 chr5:126409151-126409231 3.20e-02 17_[+3(6.47e-05)]_12_[+3(1.88e-05)]_\ 35 chr15:35838560-35838640 3.24e-01 80 chr5:176981599-176981679 4.60e-03 57_[+1(1.43e-05)]_15 chr7:55955118-55955198 3.74e-01 80 chrX:47930760-47930840 3.98e-02 42_[+2(1.53e-05)]_30 chr10:121632450-12163253 2.93e-02 31_[+1(9.50e-06)]_41 chr2:113012702-113012782 7.06e-02 64_[+5(3.82e-05)]_8 chr1:156426447-156426527 4.77e-01 80 chr2:36824895-36824975 1.78e-02 21_[+4(3.89e-05)]_51 chr8:1711917-1711997 2.84e-01 80 chr20:25371620-25371700 1.64e-02 9_[+1(1.43e-05)]_63 chr1:104615568-104615648 4.72e-03 27_[+1(9.50e-06)]_45 chrX:133507209-133507289 1.39e-01 80 chr17:3627615-3627695 4.85e-02 15_[+3(1.88e-05)]_57 chr10:104678242-10467832 3.46e-04 28_[+2(1.01e-05)]_34_[+2(1.01e-05)]_\ 2 chr3:51533584-51533664 1.77e-01 33_[+4(3.89e-05)]_39 chr10:123687580-12368766 7.79e-02 55_[+1(9.50e-06)]_17 chr16:89181824-89181904 7.81e-02 22_[+3(6.47e-05)]_3_[+3(6.47e-05)]_\ 39 chr12:133066688-13306676 4.76e-03 14_[+3(9.31e-05)]_14_[+4(3.89e-05)]_\ 36 chr7:57271368-57271448 1.05e-01 45_[+1(9.50e-06)]_27 chr20:34042653-34042733 2.79e-03 48_[+1(5.80e-05)]_24 chr20:36971823-36971903 1.62e-01 80 chrX:109641286-109641366 7.42e-03 43_[+1(1.43e-05)]_29 chr19:12886456-12886536 7.87e-03 21_[+1(9.50e-06)]_51 chr3:48700391-48700471 4.08e-03 34_[+1(9.50e-06)]_38 chr12:110318275-11031835 7.37e-02 34_[+3(1.88e-05)]_38 chr3:53916191-53916271 2.12e-02 38_[+2(1.01e-05)]_34 chrX:47696146-47696226 6.31e-05 17_[+3(6.47e-05)]_6_[+1(5.30e-05)]_\ 41 chr7:100860937-100861017 1.53e-03 19_[+4(3.89e-05)]_53 chr3:125314433-125314513 6.84e-03 53_[+1(9.50e-06)]_19 chr11:65082165-65082245 9.94e-01 80 chr19:49138852-49138932 2.27e-01 80 chr19:49127376-49127456 4.19e-02 5_[+2(1.01e-05)]_67 chr22:50311985-50312065 5.37e-02 80 chr19:16582799-16582879 3.53e-01 80 chr8:33370623-33370703 6.26e-02 52_[+3(6.47e-05)]_20 chr10:104192350-10419243 2.41e-02 50_[+1(2.39e-05)]_22 chr1:161129247-161129327 8.42e-03 63_[+2(1.01e-05)]_9 chr3:179065366-179065446 2.73e-04 43_[+2(1.53e-05)]_29 chr1:90460385-90460465 4.96e-03 41_[+2(2.53e-05)]_31 chr9:32552265-32552345 9.18e-04 8_[+4(3.89e-05)]_55_[+2(1.01e-05)]_\ 1 chr19:16739050-16739130 4.59e-01 80 chr1:5888605-5888685 5.52e-02 80 chr10:99639107-99639187 4.21e-01 80 chr5:64920181-64920261 5.21e-01 80 chr17:40761541-40761621 1.85e-01 80 chr7:63560539-63560619 2.04e-02 18_[+2(1.01e-05)]_54 chr19:31187559-31187639 1.28e-01 80 chrX:135991272-135991352 1.56e-02 10_[+2(1.01e-05)]_62 chr10:16859681-16859761 1.30e-01 41_[+4(3.89e-05)]_31 chr6:29617566-29617646 1.60e-02 5_[+2(1.53e-05)]_67 chr2:101179337-101179417 7.87e-02 39_[+3(6.47e-05)]_33 chr17:49198346-49198426 4.11e-01 80 chr19:59070452-59070532 1.68e-03 5_[+3(8.36e-05)]_37_[+1(9.50e-06)]_\ 22 chr2:33824496-33824576 5.51e-01 80 chr9:27573756-27573836 2.56e-03 33_[+1(4.82e-05)]_6_[+4(3.89e-05)]_\ 25 chr17:37055133-37055213 1.05e-01 80 chrX:48456461-48456541 4.18e-02 80 chr11:113930275-11393035 1.51e-01 59_[+2(7.82e-05)]_13 chr4:83350128-83350208 2.19e-01 80 chrX:47863420-47863500 1.46e-02 12_[+5(3.82e-05)]_60 chr17:16557125-16557205 7.17e-02 58_[+5(7.56e-05)]_14 chr16:30546256-30546336 3.11e-03 30_[+2(1.53e-05)]_42 chr14:88459544-88459624 7.00e-02 59_[+1(1.43e-05)]_13 chr20:10415256-10415336 2.65e-01 80 chr2:219827761-219827841 1.04e-01 80 chr1:247373749-247373829 2.96e-02 23_[+4(3.89e-05)]_49 chr1:154933921-154934001 1.63e-02 80 chr6:74363768-74363848 3.05e-02 22_[+1(9.50e-06)]_50 chr16:23739243-23739323 8.61e-02 46_[+2(5.35e-05)]_26 chr19:37701466-37701546 6.51e-03 5_[+5(8.54e-05)]_67 chr18:55297468-55297548 1.85e-03 46_[+1(2.39e-05)]_11_[+3(1.88e-05)]_\ 7 chr1:155189438-155189518 8.37e-01 80 chr11:70049292-70049372 8.12e-02 32_[+4(3.89e-05)]_40 chr11:67250465-67250545 7.19e-05 55_[+2(1.53e-05)]_17 chr6:157877601-157877681 2.47e-01 80 chr16:67143752-67143832 4.97e-01 80 chr14:35008869-35008949 6.16e-02 55_[+3(1.88e-05)]_17 chr1:160807443-160807523 1.15e-03 38_[+2(5.35e-05)]_[+3(1.88e-05)]_26 chr18:54318377-54318457 5.12e-04 29_[+2(1.01e-05)]_43 chr9:5437923-5438003 2.31e-02 42_[+3(1.88e-05)]_30 chr3:178865802-178865882 5.98e-02 80 chr1:6296014-6296094 1.38e-01 22_[+5(7.56e-05)]_50 chr20:5730936-5731016 2.04e-03 80 chr20:18488373-18488453 9.62e-04 49_[+2(3.04e-05)]_23 chrX:47180870-47180950 4.19e-04 14_[+2(1.53e-05)]_31_[+1(2.39e-05)]_\ 19 chr14:21458037-21458117 9.85e-03 20_[+4(8.79e-05)]_52 chr1:78245231-78245311 1.12e-02 80 chr1:6685217-6685297 3.27e-03 25_[+1(9.50e-06)]_47 chr6:33539147-33539227 1.10e-02 55_[+1(9.50e-06)]_17 chrX:30907490-30907570 1.21e-04 42_[+2(1.01e-05)]_30 chr7:37609852-37609932 4.41e-01 80 chrX:119763980-119764060 3.31e-01 80 chr19:39897310-39897390 9.79e-03 27_[+4(3.89e-05)]_45 chr2:131099798-131099878 4.04e-01 80 chr11:44341327-44341407 1.94e-01 24_[+4(3.89e-05)]_48 chrX:40067056-40067136 4.01e-01 80 chr1:28995217-28995297 6.44e-03 71_[+5(3.82e-05)]_1 chr12:6982434-6982514 1.88e-03 23_[+4(3.89e-05)]_35_[+3(6.47e-05)]_\ 6 chr19:53696592-53696672 3.33e-02 80 chr15:67834913-67834993 1.66e-03 37_[+2(2.53e-05)]_35 chr11:63993583-63993663 1.37e-01 48_[+4(3.89e-05)]_24 chr7:149411872-149411952 6.39e-02 48_[+4(3.89e-05)]_24 chr17:40831702-40831782 2.12e-02 1_[+4(5.85e-05)]_71 chr20:10415804-10415884 4.50e-03 26_[+1(9.50e-06)]_46 chr17:7232710-7232790 2.46e-01 80 chr9:104296032-104296112 1.94e-03 7_[+3(1.88e-05)]_65 chr7:152456676-152456756 4.58e-02 57_[+2(1.01e-05)]_15 chr1:19181222-19181302 5.68e-01 80 chr6:30294370-30294450 2.52e-01 80 chr17:45570067-45570147 6.24e-01 80 chr10:112678988-11267906 2.64e-01 80 chr18:39535002-39535082 1.20e-03 47_[+2(3.04e-05)]_25 chr12:110434195-11043427 1.13e-02 51_[+1(9.50e-06)]_21 chr16:838307-838387 1.37e-01 66_[+3(6.47e-05)]_6 chr10:112678417-11267849 9.23e-01 80 chr6:117923826-117923906 3.17e-01 80 chr20:57227334-57227414 6.97e-01 80 chr7:2883949-2884029 9.80e-01 80 chr6:137143653-137143733 1.23e-01 48_[+3(6.47e-05)]_24 chr17:1733117-1733197 8.96e-01 80 chr1:206629269-206629349 1.82e-02 80 chr1:231004184-231004264 7.89e-01 80 chr20:2821263-2821343 1.82e-01 80 chr1:213189193-213189273 1.51e-01 80 chr17:260060-260140 2.09e-03 28_[+4(3.89e-05)]_8_[+5(1.93e-05)]_\ 28 chr1:59281029-59281109 4.10e-02 21_[+3(1.88e-05)]_51 chr19:16308566-16308646 4.76e-05 13_[+3(8.36e-05)]_22_[+2(3.81e-05)]_\ 18_[+5(7.56e-05)]_3 chr20:43538673-43538753 5.94e-02 34_[+3(6.47e-05)]_38 chrX:153237537-153237617 6.03e-03 14_[+1(9.50e-06)]_58 chr2:64751249-64751329 4.34e-02 46_[+2(1.53e-05)]_26 chr14:69445443-69445523 1.69e-01 47_[+3(6.47e-05)]_25 chr22:24059556-24059636 3.05e-02 39_[+1(9.50e-06)]_33 chr11:119076551-11907663 1.67e-03 51_[+5(1.93e-05)]_21 chr13:38923655-38923735 1.30e-02 34_[+3(1.88e-05)]_38 chr15:90777131-90777211 6.08e-03 42_[+3(1.88e-05)]_30 chr1:45118649-45118729 3.02e-01 80 chr2:219827960-219828040 1.88e-01 80 chr20:10200241-10200321 7.01e-01 80 chr6:33551677-33551757 1.94e-03 41_[+2(5.35e-05)]_31 chr14:64010281-64010361 7.88e-02 39_[+3(6.47e-05)]_33 chr6:146285495-146285575 2.53e-02 68_[+5(3.82e-05)]_4 chr2:27434908-27434988 2.34e-01 80 chr17:7210269-7210349 7.63e-01 80 chr22:30820040-30820120 1.46e-02 3_[+1(9.50e-06)]_69 chr16:72042441-72042521 1.19e-03 11_[+4(3.89e-05)]_17_[+5(1.93e-05)]_\ 36 chr11:394321-394401 5.06e-01 80 chr22:23152675-23152755 5.11e-01 80 chr16:2954391-2954471 2.42e-01 80 chr19:14229119-14229199 7.59e-01 80 chr1:155188796-155188876 5.81e-01 80 chr14:24664894-24664974 6.41e-05 8_[+3(1.88e-05)]_23_[+4(5.85e-05)]_\ 33 chr18:47807941-47808021 4.07e-02 2_[+5(7.56e-05)]_70 chr18:43753963-43754043 1.43e-03 29_[+4(3.89e-05)]_29_[+1(3.85e-05)]_\ 6 chrX:47341916-47341996 7.26e-01 80 chr1:16302090-16302170 2.56e-01 80 chr9:35749723-35749803 4.27e-01 80 chr3:178789604-178789684 3.09e-02 47_[+5(1.93e-05)]_25 chr3:101396075-101396155 7.19e-02 25_[+1(3.85e-05)]_47 chr17:1359621-1359701 5.19e-02 24_[+5(1.93e-05)]_48 chr9:26892805-26892885 9.17e-02 15_[+3(8.36e-05)]_57 chr9:86536287-86536367 6.51e-01 80 chr2:43447164-43447244 1.11e-02 9_[+3(8.36e-05)]_63 chr14:64805616-64805696 6.67e-02 80 chr16:1020894-1020974 4.48e-02 80 chr20:10414852-10414932 9.31e-01 80 chr17:40021593-40021673 1.30e-02 25_[+1(9.50e-06)]_47 chr17:18218279-18218359 4.93e-02 23_[+3(1.88e-05)]_15_[+3(1.88e-05)]_\ 26 chr19:50316896-50316976 3.35e-04 58_[+2(1.01e-05)]_14 chr2:62733014-62733094 9.48e-05 40_[+4(8.79e-05)]_9_[+1(1.43e-05)]_\ 15 chr5:134209942-134210022 4.69e-02 32_[+2(1.01e-05)]_23_[+2(1.01e-05)]_\ 9 chr19:54693886-54693966 2.18e-02 32_[+4(3.89e-05)]_40 chr19:49217628-49217708 9.70e-01 80 chr10:99393233-99393313 2.75e-02 80 chr16:57769220-57769300 3.67e-01 80 chr12:53574219-53574299 4.59e-01 80 chr16:30547144-30547224 1.99e-01 80 chr3:33155901-33155981 1.09e-01 80 chr20:43991606-43991686 9.61e-04 62_[+5(3.82e-05)]_10 chr3:119217202-119217282 6.94e-02 68_[+3(8.36e-05)]_4 chr12:8234672-8234752 4.08e-02 52_[+2(4.32e-05)]_20 chr16:29973250-29973330 8.21e-03 62_[+5(1.93e-05)]_10 chr9:95857786-95857866 8.02e-01 80 chr1:43282974-43283054 1.77e-01 60_[+3(6.47e-05)]_12 chr17:2689620-2689700 8.12e-04 53_[+2(2.53e-05)]_19 chr7:72298727-72298807 5.17e-01 80 chr19:38826389-38826469 2.18e-03 50_[+1(1.43e-05)]_22 chr20:388865-388945 4.78e-02 62_[+3(8.36e-05)]_10 chr1:245331491-245331571 3.18e-03 23_[+4(8.79e-05)]_15_[+1(2.39e-05)]_\ 26 chr3:64009134-64009214 9.21e-02 80 chr7:157129599-157129679 2.88e-03 28_[+5(1.93e-05)]_17_[+4(3.89e-05)]_\ 19 chr2:160143364-160143444 8.04e-02 80 chr2:202316179-202316259 9.25e-01 80 chr19:42722005-42722085 2.23e-02 80 chrX:1710399-1710479 1.35e-03 80 chr4:48832925-48833005 6.01e-02 16_[+5(7.56e-05)]_56 chr1:6685418-6685498 7.30e-01 80 chr19:49017192-49017272 8.41e-03 17_[+4(8.79e-05)]_12_[+4(5.85e-05)]_\ 35 chr6:109704243-109704323 9.54e-01 80 chr14:23770997-23771077 2.01e-01 80 chr3:51422405-51422485 2.49e-03 53_[+2(1.01e-05)]_19 chr17:57970364-57970444 6.11e-02 19_[+5(3.82e-05)]_53 chr1:27114373-27114453 7.02e-01 80 chr12:56040026-56040106 5.74e-01 80 chr10:119806360-11980644 5.00e-03 52_[+3(8.36e-05)]_10_[+1(5.30e-05)]_\ 2 chr5:1799915-1799995 9.16e-04 26_[+5(3.82e-05)]_29_[+2(1.01e-05)]_\ 9 chr17:7590854-7590934 2.33e-01 80 chr19:38865068-38865148 6.32e-02 42_[+1(2.39e-05)]_30 chr19:38826906-38826986 5.97e-01 80 chr9:140135229-140135309 1.98e-01 80 chr3:57583374-57583454 1.89e-02 29_[+3(6.47e-05)]_43 chr12:57082032-57082112 4.82e-01 80 chr20:34050306-34050386 8.65e-02 [+4(5.85e-05)]_72 chr9:133568979-133569059 3.83e-02 54_[+2(2.53e-05)]_18 chr16:29827290-29827370 2.76e-04 17_[+1(9.50e-06)]_6_[+4(7.81e-05)]_\ 41 chr11:111742199-11174227 5.41e-01 80 chr1:156163695-156163775 1.34e-03 13_[+2(5.35e-05)]_19_[+2(1.01e-05)]_\ 32 chr1:161147220-161147300 1.26e-02 50_[+1(9.50e-06)]_22 chr19:37663659-37663739 3.67e-02 80 chr9:124855647-124855727 5.88e-03 45_[+1(2.39e-05)]_27 chr11:394550-394630 7.12e-01 80 chrX:129299789-129299869 5.41e-02 41_[+5(1.93e-05)]_31 chr1:47903501-47903581 3.92e-01 80 chr18:55289085-55289165 5.95e-02 57_[+1(9.50e-06)]_15 chr17:58156063-58156143 1.28e-01 80 chr12:67835700-67835780 6.02e-02 44_[+1(8.12e-05)]_28 chr2:127415555-127415635 4.53e-03 21_[+3(1.88e-05)]_51 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************