******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TFDP1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:196729956-196730036 1.0000 80 chr20:42295703-42295783 1.0000 80 chr14:105487535-10548761 1.0000 80 chr1:23670433-23670513 1.0000 80 chr14:105864512-10586459 1.0000 80 chr3:56717401-56717481 1.0000 80 chr21:33104584-33104664 1.0000 80 chr22:43253434-43253514 1.0000 80 chr2:113403867-113403947 1.0000 80 chr15:44119179-44119259 1.0000 80 chr6:18264751-18264831 1.0000 80 chr10:69523835-69523915 1.0000 80 chr17:38020402-38020482 1.0000 80 chr14:24664505-24664585 1.0000 80 chr17:47755679-47755759 1.0000 80 chr10:129924685-12992476 1.0000 80 chr16:88870144-88870224 1.0000 80 chr1:53926171-53926251 1.0000 80 chr11:108369180-10836926 1.0000 80 chr17:77776547-77776627 1.0000 80 chrX:48555460-48555540 1.0000 80 chr1:226309716-226309796 1.0000 80 chr12:2986290-2986370 1.0000 80 chr1:43638438-43638518 1.0000 80 chr2:7005853-7005933 1.0000 80 chr15:66914644-66914724 1.0000 80 chr1:1167884-1167964 1.0000 80 chr15:48624311-48624391 1.0000 80 chr17:7819224-7819304 1.0000 80 chr19:47290103-47290183 1.0000 80 chr16:28891368-28891448 1.0000 80 chr9:106856555-106856635 1.0000 80 chr6:34203277-34203357 1.0000 80 chr1:28845086-28845166 1.0000 80 chr8:26435185-26435265 1.0000 80 chr16:4323047-4323127 1.0000 80 chr16:47177808-47177888 1.0000 80 chr15:89787506-89787586 1.0000 80 chr11:19262888-19262968 1.0000 80 chrX:101187215-101187295 1.0000 80 chr11:64808442-64808522 1.0000 80 chr8:145669773-145669853 1.0000 80 chr3:127347754-127347834 1.0000 80 chr19:10614039-10614119 1.0000 80 chr17:40897151-40897231 1.0000 80 chr17:34257730-34257810 1.0000 80 chr8:143808532-143808612 1.0000 80 chr1:7844347-7844427 1.0000 80 chr11:19262682-19262762 1.0000 80 chr11:61276991-61277071 1.0000 80 chr19:1568503-1568583 1.0000 80 chr19:48867510-48867590 1.0000 80 chr6:90539431-90539511 1.0000 80 chr7:4721701-4721781 1.0000 80 chr20:32274169-32274249 1.0000 80 chr1:91966548-91966628 1.0000 80 chr6:74019470-74019550 1.0000 80 chr1:46050381-46050461 1.0000 80 chr19:797790-797870 1.0000 80 chr2:10184184-10184264 1.0000 80 chr1:23857707-23857787 1.0000 80 chr16:28891573-28891653 1.0000 80 chr8:27695301-27695381 1.0000 80 chr21:34960950-34961030 1.0000 80 chr19:39997730-39997810 1.0000 80 chr7:158799100-158799180 1.0000 80 chr1:26232089-26232169 1.0000 80 chr18:47901389-47901469 1.0000 80 chr3:56717604-56717684 1.0000 80 chr1:153377278-153377358 1.0000 80 chr5:179499418-179499498 1.0000 80 chr9:128508518-128508598 1.0000 80 chr15:41055583-41055663 1.0000 80 chr11:74303594-74303674 1.0000 80 chr4:174256014-174256094 1.0000 80 chr1:144886688-144886768 1.0000 80 chr17:8113878-8113958 1.0000 80 chr11:9595083-9595163 1.0000 80 chr12:6960428-6960508 1.0000 80 chr16:85722529-85722609 1.0000 80 chr5:149737609-149737689 1.0000 80 chr19:16222141-16222221 1.0000 80 chr8:145743179-145743259 1.0000 80 chr14:105487735-10548781 1.0000 80 chr17:29886242-29886322 1.0000 80 chr16:30006897-30006977 1.0000 80 chr10:45496697-45496777 1.0000 80 chr1:28845289-28845369 1.0000 80 chr15:68346388-68346468 1.0000 80 chr16:29984724-29984804 1.0000 80 chr19:49223978-49224058 1.0000 80 chr20:5100023-5100103 1.0000 80 chr3:13461816-13461896 1.0000 80 chr13:34117054-34117134 1.0000 80 chr12:98910343-98910423 1.0000 80 chr1:51443202-51443282 1.0000 80 chr20:34359695-34359775 1.0000 80 chr22:22378234-22378314 1.0000 80 chrX:47518798-47518878 1.0000 80 chr2:48010276-48010356 1.0000 80 chr19:46431113-46431193 1.0000 80 chr19:14247531-14247611 1.0000 80 chr9:99181065-99181145 1.0000 80 chr2:74757717-74757797 1.0000 80 chr8:71581578-71581658 1.0000 80 chr5:176739414-176739494 1.0000 80 chr1:9555495-9555575 1.0000 80 chr10:102820459-10282053 1.0000 80 chr7:45039377-45039457 1.0000 80 chr6:28186810-28186890 1.0000 80 chr9:139886900-139886980 1.0000 80 chr15:68521698-68521778 1.0000 80 chr1:41445888-41445968 1.0000 80 chr20:42295907-42295987 1.0000 80 chr10:86016897-86016977 1.0000 80 chr1:12123393-12123473 1.0000 80 chr6:33588965-33589045 1.0000 80 chr4:174255795-174255875 1.0000 80 chr11:134093854-13409393 1.0000 80 chr2:58468530-58468610 1.0000 80 chr19:44259733-44259813 1.0000 80 chr16:67596244-67596324 1.0000 80 chr1:51434298-51434378 1.0000 80 chr13:110439146-11043922 1.0000 80 chr19:48076492-48076572 1.0000 80 chr9:99180865-99180945 1.0000 80 chr21:33104789-33104869 1.0000 80 chr7:100292167-100292247 1.0000 80 chr6:18264953-18265033 1.0000 80 chr17:34838893-34838973 1.0000 80 chr1:41445684-41445764 1.0000 80 chr9:99180662-99180742 1.0000 80 chr1:6296126-6296206 1.0000 80 chr11:58912221-58912301 1.0000 80 chr10:115614085-11561416 1.0000 80 chr8:124084894-124084974 1.0000 80 chr11:85565913-85565993 1.0000 80 chr19:13262751-13262831 1.0000 80 chr8:117886993-117887073 1.0000 80 chr2:219433227-219433307 1.0000 80 chr19:5978296-5978376 1.0000 80 chr12:19592209-19592289 1.0000 80 chr9:34049537-34049617 1.0000 80 chr3:49377795-49377875 1.0000 80 chr16:3019201-3019281 1.0000 80 chr6:26188753-26188833 1.0000 80 chr3:155589163-155589243 1.0000 80 chr9:124975979-124976059 1.0000 80 chr2:174828858-174828938 1.0000 80 chr1:247681691-247681771 1.0000 80 chr4:120987899-120987979 1.0000 80 chr4:178230971-178231051 1.0000 80 chr3:196696795-196696875 1.0000 80 chr12:77459416-77459496 1.0000 80 chr11:95523069-95523149 1.0000 80 chr15:56757423-56757503 1.0000 80 chr19:56015141-56015221 1.0000 80 chr14:105864712-10586479 1.0000 80 chr19:55987564-55987644 1.0000 80 chr9:136243189-136243269 1.0000 80 chr6:27862272-27862352 1.0000 80 chr2:61035706-61035786 1.0000 80 chr13:39612471-39612551 1.0000 80 chr11:113535999-11353607 1.0000 80 chr16:11439267-11439347 1.0000 80 chr17:74380400-74380480 1.0000 80 chr3:48229885-48229965 1.0000 80 chr12:49524573-49524653 1.0000 80 chr1:179050805-179050885 1.0000 80 chr13:103046906-10304698 1.0000 80 chr16:3355857-3355937 1.0000 80 chr3:179169303-179169383 1.0000 80 chrX:53449120-53449200 1.0000 80 chr7:36429398-36429478 1.0000 80 chr22:36903198-36903278 1.0000 80 chr3:49377994-49378074 1.0000 80 chr6:97731027-97731107 1.0000 80 chr1:26202168-26202248 1.0000 80 chr5:170814470-170814550 1.0000 80 chr20:32320056-32320136 1.0000 80 chr16:8962501-8962581 1.0000 80 chr3:148804475-148804555 1.0000 80 chr4:6784018-6784098 1.0000 80 chr19:12998384-12998464 1.0000 80 chr12:50101421-50101501 1.0000 80 chr3:14989200-14989280 1.0000 80 chr17:36858749-36858829 1.0000 80 chr12:54673883-54673963 1.0000 80 chr16:89939656-89939736 1.0000 80 chr7:92053715-92053795 1.0000 80 chr18:658352-658432 1.0000 80 chr4:103790012-103790092 1.0000 80 chr3:186857215-186857295 1.0000 80 chr1:2344465-2344545 1.0000 80 chr6:109761559-109761639 1.0000 80 chr9:37079446-37079526 1.0000 80 chr4:154265782-154265862 1.0000 80 chr19:5978500-5978580 1.0000 80 chr7:2393674-2393754 1.0000 80 chr5:43042805-43042885 1.0000 80 chr16:68118440-68118520 1.0000 80 chr5:112312211-112312291 1.0000 80 chr9:34329220-34329300 1.0000 80 chr1:156542300-156542380 1.0000 80 chr9:94662792-94662872 1.0000 80 chr10:70231504-70231584 1.0000 80 chr1:33283613-33283693 1.0000 80 chr1:26799419-26799499 1.0000 80 chr11:93394711-93394791 1.0000 80 chr11:134201902-13420198 1.0000 80 chr1:7844546-7844626 1.0000 80 chr22:31364806-31364886 1.0000 80 chr15:79237371-79237451 1.0000 80 chr19:56111611-56111691 1.0000 80 chr7:20874901-20874981 1.0000 80 chr5:96519536-96519616 1.0000 80 chr7:155089337-155089417 1.0000 80 chr16:67281561-67281641 1.0000 80 chr13:115079805-11507988 1.0000 80 chr17:40897353-40897433 1.0000 80 chr15:49103398-49103478 1.0000 80 chr17:34890659-34890739 1.0000 80 chr7:14030716-14030796 1.0000 80 chr16:771611-771691 1.0000 80 chr15:43622395-43622475 1.0000 80 chr10:103911838-10391191 1.0000 80 chr2:11605944-11606024 1.0000 80 chr13:115000227-11500030 1.0000 80 chr17:27071059-27071139 1.0000 80 chr9:98079767-98079847 1.0000 80 chr17:73749982-73750062 1.0000 80 chr7:158497418-158497498 1.0000 80 chr15:91260582-91260662 1.0000 80 chr2:128284344-128284424 1.0000 80 chr11:17297810-17297890 1.0000 80 chr20:34189506-34189586 1.0000 80 chr18:12948456-12948536 1.0000 80 chr19:4909431-4909511 1.0000 80 chr17:61926788-61926868 1.0000 80 chr20:17949648-17949728 1.0000 80 chr11:67250965-67251045 1.0000 80 chr18:657713-657793 1.0000 80 chr13:42846025-42846105 1.0000 80 chr15:77197824-77197904 1.0000 80 chr1:110881518-110881598 1.0000 80 chr2:97001472-97001552 1.0000 80 chr15:69706627-69706707 1.0000 80 chr3:186524208-186524288 1.0000 80 chr1:158985292-158985372 1.0000 80 chr20:58508691-58508771 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TFDP1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TFDP1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.158 C 0.339 G 0.341 T 0.162 Background letter frequencies (from file dataset with add-one prior applied): A 0.158 C 0.339 G 0.341 T 0.162 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SGCGGGAA MEME-1 width = 8 sites = 99 llr = 775 E-value = 3.4e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCGGGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::::a7 pos.-specific C 4:9:1::1 probability G 6a:a9a:2 matrix T ::1::::1 bits 2.7 * 2.4 * 2.1 * 1.9 * Relative 1.6 * * ** Entropy 1.3 ****** (11.3 bits) 1.1 ******* 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel GGCGGGAA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGGGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:58508691-58508771 42 3.90e-05 AACGGCGGAA GGCGGGAA GCGCCCGTCC chr3:186524208-186524288 66 3.90e-05 CGAAAAGCAG GGCGGGAA TACGCCG chr18:12948456-12948536 63 3.90e-05 CGGGGCTGCG GGCGGGAA CCCAGGGGCA chr20:34189506-34189586 58 3.90e-05 GCGCGTCAGC GGCGGGAA GAGCTCCACG chr17:73749982-73750062 22 3.90e-05 CGGCGGCGCG GGCGGGAA GGGCGGCAGC chr17:34890659-34890739 5 3.90e-05 AGGC GGCGGGAA GAACACGGGC chr15:49103398-49103478 64 3.90e-05 CGCCAGAGGT GGCGGGAA GCTCCCCCT chr16:67281561-67281641 20 3.90e-05 TGGCTAGGAG GGCGGGAA AAACCGAGCT chr1:26799419-26799499 45 3.90e-05 AACCCGAAAG GGCGGGAA GGCGGCGCTC chr1:33283613-33283693 22 3.90e-05 GGCTGTTGCT GGCGGGAA GATAGCCGCG chr9:94662792-94662872 59 3.90e-05 CAGCCAAGGA GGCGGGAA AACGACAAGC chr5:112312211-112312291 41 3.90e-05 CCTCAAAGGC GGCGGGAA GTTGGTTTTC chr18:658352-658432 65 3.90e-05 GGGCAAAGGC GGCGGGAA GAGGAGAG chr16:8962501-8962581 25 3.90e-05 CAGCGGGGAG GGCGGGAA GAGCTTCCCC chrX:53449120-53449200 12 3.90e-05 GGACTGAGCT GGCGGGAA GCTGGTTCCA chr1:179050805-179050885 25 3.90e-05 CTAACAGGTT GGCGGGAA GTTGATCTGC chr12:49524573-49524653 42 3.90e-05 GCCCAGGAGC GGCGGGAA GGTAACGGTC chr16:11439267-11439347 19 3.90e-05 TCTCAAAGTT GGCGGGAA AGCGGAGGCG chr13:39612471-39612551 22 3.90e-05 CTGCCCTGAG GGCGGGAA AGGGTGGTCA chr19:13262751-13262831 3 3.90e-05 GT GGCGGGAA GGCGCCGCGA chr10:115614085-11561416 40 3.90e-05 TTAGGGTCTT GGCGGGAA CAAGTTCCCG chr2:58468530-58468610 22 3.90e-05 CCCCAGCCTT GGCGGGAA GATCCTGGAG chr4:174255795-174255875 2 3.90e-05 C GGCGGGAA GAGGGTTTGA chr5:176739414-176739494 27 3.90e-05 CACACGTTCG GGCGGGAA AAGAAGCAGG chr1:153377278-153377358 47 3.90e-05 CCTACAGAAG GGCGGGAA CCACGAAGGA chr2:10184184-10184264 40 3.90e-05 GGGAGCGGCT GGCGGGAA CGCGGCACGC chr1:46050381-46050461 60 3.90e-05 GCCTTGAGGA GGCGGGAA AACTCCATTG chr6:74019470-74019550 47 3.90e-05 AGAGCCCGCC GGCGGGAA GAGACCAGAC chr6:90539431-90539511 56 3.90e-05 CCCTTCCAAA GGCGGGAA CTAGTTGTGG chr19:10614039-10614119 21 3.90e-05 GAAAGGGCGC GGCGGGAA AGGAGCGGCG chr19:47290103-47290183 27 3.90e-05 AGCTGAAATG GGCGGGAA GCGGAGGCCA chr15:48624311-48624391 40 3.90e-05 GGGCGGGGCT GGCGGGAA ATTTCGGTTT chr2:7005853-7005933 40 3.90e-05 GCCAGGCGCC GGCGGGAA ACGAAACCCG chr11:108369180-10836926 18 3.90e-05 GGGTCTTTCG GGCGGGAA AGATTGCGGC chr16:88870144-88870224 29 3.90e-05 cgggAAATTT GGCGGGAA CCGCGCCCGC chr10:69523835-69523915 25 3.90e-05 CCCCAGTCTT GGCGGGAA ACGCCGCGGA chr15:44119179-44119259 18 3.90e-05 CCGCAATCTT GGCGGGAA GGCGCCGGCC chr19:4909431-4909511 67 7.78e-05 GCCGAGTTTT CGCGGGAA AAAAAT chr15:91260582-91260662 41 7.78e-05 GTGGTTGCGG CGCGGGAA GTTTGGATCC chr10:103911838-10391191 21 7.78e-05 AGAAAGACTG CGCGGGAA GTCCCGAGTT chr1:7844546-7844626 49 7.78e-05 TCCCTCGGCG CGCGGGAA AGTTGGGGCA chr3:148804475-148804555 31 7.78e-05 AAGGCGGGCG CGCGGGAA AGCCACGAGG chr9:34049537-34049617 25 7.78e-05 CTGCCCCCTG CGCGGGAA AACGCCAACG chr17:34838893-34838973 60 7.78e-05 GCGCCAGCTG CGCGGGAA TCCGGGCGAG chr6:33588965-33589045 20 7.78e-05 gagcgcgggg cgcgggaa ggcaggcggg chr1:9555495-9555575 4 7.78e-05 AAG CGCGGGAA AGCGGCCGCG chr19:46431113-46431193 50 7.78e-05 caggtgcctc cgcgggaa gcttgaaTTT chr3:13461816-13461896 63 7.78e-05 TGGGCCTGAG CGCGGGAA CTCTGGGGGC chrX:48555460-48555540 47 7.78e-05 CGCGCCCGCG CGCGGGAA AATCGGCCCC chr14:24664505-24664585 49 7.78e-05 GTCCTCACCG CGCGGGAA GGGCTGGCCG chr2:113403867-113403947 19 7.78e-05 GGGCGGCGCG CGCGGGAA CGGCCCTTTT chr7:14030716-14030796 45 9.59e-05 AAGCATTTTG AGCGGGAA CTGCATTTTA chr17:36858749-36858829 18 9.59e-05 AGGTGCGGGA AGCGGGAA GCAGGAGCGG chr15:56757423-56757503 19 9.59e-05 AAACTAGAAA AGCGGGAA GTTCAGACTG chr9:128508518-128508598 31 9.59e-05 TGACAGGAAG AGCGGGAA AGTGCACCAG chr6:18264751-18264831 39 9.59e-05 CGGGAAGGAG AGCGGGAA TGCGGCGACC chr15:69706627-69706707 20 1.80e-04 AAATGCGCCA GGCGGGAG CTCACCTGGG chr15:77197824-77197904 20 1.80e-04 GGGGCGCCCA GGCGGGAG GTGTGAGGGT chr15:79237371-79237451 56 1.80e-04 GTGGAGGAGC GGCGGGAG CGCGAAgggg chr19:5978500-5978580 64 1.80e-04 CACACGCGCG GGCGGGAG ACGCGTTGC chr5:170814470-170814550 57 1.80e-04 GCAGACTCTT GGCGGGAG GCCGGCGCGC chr1:6296126-6296206 22 1.80e-04 TCCGGAATTT GGCGGGAg cgccccgccc chr6:18264953-18265033 65 1.80e-04 CCGCGGGGCG GGCGGGAG CGGGAGGC chr1:144886688-144886768 54 1.80e-04 AGTCCTGGAT GGCGGGAG ATGATGGCTT chr11:74303594-74303674 49 1.80e-04 GTTTCCCGCC GGCGGGAG CTGTGGCTGT chr1:28845086-28845166 25 1.80e-04 CGCCCGCGCA GGCGGGAG ATTCAAACTG chr17:38020402-38020482 65 1.80e-04 GCGCGCAGCT GGCGGGAG ATTCCCGG chr20:42295703-42295783 12 1.80e-04 CGACGCGCTT GGCGGGAG ATAGAAAAGT chr3:196729956-196730036 66 1.80e-04 GGCTCCAGGT GGCGGGAG GCGGCGG chr8:71581578-71581658 33 1.99e-04 CGCGGGCAGT GGTGGGAA GGCTGGCGCG chr9:98079767-98079847 52 2.82e-04 GGGTGGTCCT CGCGGGAG CTGCTTCAGC chr4:6784018-6784098 28 2.82e-04 CGTGCCCCTC CGCGGGAG ACGTCTCCTC chr1:26202168-26202248 31 2.82e-04 GTGTTGCACG CGCGGGAG AGGGGTCGGC chr22:36903198-36903278 24 2.82e-04 TCCGGCCCAG CGCGGGAG AGGCGCGCGC chr9:136243189-136243269 32 2.82e-04 GGGGCCAGCG CGCGGGAG GGACGCCTGA chr13:34117054-34117134 55 2.82e-04 CGAGTTCCCG CGCGGGAG GGACTTTGTG chr17:47755679-47755759 24 2.82e-04 GCGCGCAGGG CGCGGGAG CCCGCTGCGA chr7:100292167-100292247 2 3.22e-04 G GGCGGGAT CGGCCCCAGA chr13:42846025-42846105 4 3.80e-04 GCA CGTGGGAA GGCTTTTTTT chr12:19592209-19592289 61 3.80e-04 CCCGGCAGGG CGTGGGAA GGCCCCGAGG chr1:26232089-26232169 29 3.80e-04 AGCCCGCGCG CGTGGGAA GGGGAGGGGT chr11:93394711-93394791 40 5.03e-04 CCCCGAGGAA GGCGGGAC AGGGCCTATT chr19:12998384-12998464 28 5.03e-04 CCGTGCTGAT GGCGGGAC TTGGCACGAG chr19:16222141-16222221 60 5.03e-04 GAGCTGTGAG GGCGGGAC CCAGAGACAC chr7:4721701-4721781 69 5.03e-04 GGCTACGCTG GGCGGGAC CGGC chr19:48867510-48867590 41 5.03e-04 AGAGGGAGGG GGCGGGAC TTGGGCGCAG chr8:143808532-143808612 21 5.03e-04 GGGCCTGGAC GGCGGGAC GGACCACGTA chr8:145669773-145669853 36 5.03e-04 CTCGGATCGC CGCGGGAT CCGGACTTCc chrX:101187215-101187295 16 5.03e-04 GGGCAAAAAG CGCGGGAT GTGAAAGCAC chr16:47177808-47177888 31 5.03e-04 gcggccccgg cgcgggat ccactgAAGT chr21:33104584-33104664 60 5.03e-04 CCTTGCAGAG CGCGGGAT CCCAGGGCTG chr15:43622395-43622475 44 5.42e-04 ACAAGATCTG CGCGCGAA GCGCGGCCTG chr7:20874901-20874981 68 5.42e-04 ccgctgcaaa cgcgcgaa cttct chr11:95523069-95523149 28 5.42e-04 GAGCTCTCAG CGCGCGAA ATCCGCTTTG chr16:3019201-3019281 55 5.42e-04 AGGAGCCCGG CGCGCGAA ACGCTGGCCG chr11:64808442-64808522 16 5.42e-04 CTAAGGGGAG CGCGCGAA GCTGAACTTG chr8:26435185-26435265 42 5.42e-04 CCGAAGAAAG CGCGCGAA AGGCGCGCTC chr20:17949648-17949728 60 6.64e-04 GAAACCAAAG CGCGGGAC GGATGAAAGT chr11:134201902-13420198 17 6.73e-04 TGCGGACTGG AGTGGGAA CCCGGGTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGGGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:58508691-58508771 3.9e-05 41_[+1]_31 chr3:186524208-186524288 3.9e-05 65_[+1]_7 chr18:12948456-12948536 3.9e-05 62_[+1]_10 chr20:34189506-34189586 3.9e-05 57_[+1]_15 chr17:73749982-73750062 3.9e-05 21_[+1]_51 chr17:34890659-34890739 3.9e-05 4_[+1]_68 chr15:49103398-49103478 3.9e-05 63_[+1]_9 chr16:67281561-67281641 3.9e-05 19_[+1]_53 chr1:26799419-26799499 3.9e-05 44_[+1]_28 chr1:33283613-33283693 3.9e-05 21_[+1]_51 chr9:94662792-94662872 3.9e-05 58_[+1]_14 chr5:112312211-112312291 3.9e-05 40_[+1]_32 chr18:658352-658432 3.9e-05 64_[+1]_8 chr16:8962501-8962581 3.9e-05 24_[+1]_48 chrX:53449120-53449200 3.9e-05 11_[+1]_61 chr1:179050805-179050885 3.9e-05 24_[+1]_48 chr12:49524573-49524653 3.9e-05 41_[+1]_31 chr16:11439267-11439347 3.9e-05 18_[+1]_54 chr13:39612471-39612551 3.9e-05 21_[+1]_51 chr19:13262751-13262831 3.9e-05 2_[+1]_70 chr10:115614085-11561416 3.9e-05 39_[+1]_33 chr2:58468530-58468610 3.9e-05 21_[+1]_51 chr4:174255795-174255875 3.9e-05 1_[+1]_71 chr5:176739414-176739494 3.9e-05 26_[+1]_46 chr1:153377278-153377358 3.9e-05 46_[+1]_26 chr2:10184184-10184264 3.9e-05 39_[+1]_33 chr1:46050381-46050461 3.9e-05 59_[+1]_13 chr6:74019470-74019550 3.9e-05 46_[+1]_26 chr6:90539431-90539511 3.9e-05 55_[+1]_17 chr19:10614039-10614119 3.9e-05 20_[+1]_52 chr19:47290103-47290183 3.9e-05 26_[+1]_46 chr15:48624311-48624391 3.9e-05 39_[+1]_33 chr2:7005853-7005933 3.9e-05 39_[+1]_33 chr11:108369180-10836926 3.9e-05 17_[+1]_55 chr16:88870144-88870224 3.9e-05 28_[+1]_44 chr10:69523835-69523915 3.9e-05 24_[+1]_48 chr15:44119179-44119259 3.9e-05 17_[+1]_55 chr19:4909431-4909511 7.8e-05 66_[+1]_6 chr15:91260582-91260662 7.8e-05 40_[+1]_32 chr10:103911838-10391191 7.8e-05 20_[+1]_52 chr1:7844546-7844626 7.8e-05 48_[+1]_24 chr3:148804475-148804555 7.8e-05 30_[+1]_42 chr9:34049537-34049617 7.8e-05 24_[+1]_48 chr17:34838893-34838973 7.8e-05 59_[+1]_13 chr6:33588965-33589045 7.8e-05 19_[+1]_53 chr1:9555495-9555575 7.8e-05 3_[+1]_69 chr19:46431113-46431193 7.8e-05 49_[+1]_23 chr3:13461816-13461896 7.8e-05 62_[+1]_10 chrX:48555460-48555540 7.8e-05 46_[+1]_26 chr14:24664505-24664585 7.8e-05 48_[+1]_24 chr2:113403867-113403947 7.8e-05 18_[+1]_54 chr7:14030716-14030796 9.6e-05 44_[+1]_28 chr17:36858749-36858829 9.6e-05 17_[+1]_55 chr15:56757423-56757503 9.6e-05 18_[+1]_54 chr9:128508518-128508598 9.6e-05 30_[+1]_42 chr6:18264751-18264831 9.6e-05 38_[+1]_34 chr15:69706627-69706707 0.00018 19_[+1]_53 chr15:77197824-77197904 0.00018 19_[+1]_53 chr15:79237371-79237451 0.00018 55_[+1]_17 chr19:5978500-5978580 0.00018 63_[+1]_9 chr5:170814470-170814550 0.00018 56_[+1]_16 chr1:6296126-6296206 0.00018 21_[+1]_51 chr6:18264953-18265033 0.00018 64_[+1]_8 chr1:144886688-144886768 0.00018 53_[+1]_19 chr11:74303594-74303674 0.00018 48_[+1]_24 chr1:28845086-28845166 0.00018 24_[+1]_48 chr17:38020402-38020482 0.00018 64_[+1]_8 chr20:42295703-42295783 0.00018 11_[+1]_61 chr3:196729956-196730036 0.00018 65_[+1]_7 chr8:71581578-71581658 0.0002 32_[+1]_40 chr9:98079767-98079847 0.00028 51_[+1]_21 chr4:6784018-6784098 0.00028 27_[+1]_45 chr1:26202168-26202248 0.00028 30_[+1]_42 chr22:36903198-36903278 0.00028 23_[+1]_49 chr9:136243189-136243269 0.00028 31_[+1]_41 chr13:34117054-34117134 0.00028 54_[+1]_18 chr17:47755679-47755759 0.00028 23_[+1]_49 chr7:100292167-100292247 0.00032 1_[+1]_71 chr13:42846025-42846105 0.00038 3_[+1]_69 chr12:19592209-19592289 0.00038 60_[+1]_12 chr1:26232089-26232169 0.00038 28_[+1]_44 chr11:93394711-93394791 0.0005 39_[+1]_33 chr19:12998384-12998464 0.0005 27_[+1]_45 chr19:16222141-16222221 0.0005 59_[+1]_13 chr7:4721701-4721781 0.0005 68_[+1]_4 chr19:48867510-48867590 0.0005 40_[+1]_32 chr8:143808532-143808612 0.0005 20_[+1]_52 chr8:145669773-145669853 0.0005 35_[+1]_37 chrX:101187215-101187295 0.0005 15_[+1]_57 chr16:47177808-47177888 0.0005 30_[+1]_42 chr21:33104584-33104664 0.0005 59_[+1]_13 chr15:43622395-43622475 0.00054 43_[+1]_29 chr7:20874901-20874981 0.00054 67_[+1]_5 chr11:95523069-95523149 0.00054 27_[+1]_45 chr16:3019201-3019281 0.00054 54_[+1]_18 chr11:64808442-64808522 0.00054 15_[+1]_57 chr8:26435185-26435265 0.00054 41_[+1]_31 chr20:17949648-17949728 0.00066 59_[+1]_13 chr11:134201902-13420198 0.00067 16_[+1]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGGGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCGGGAA width=8 seqs=99 chr20:58508691-58508771 ( 42) GGCGGGAA 1 chr3:186524208-186524288 ( 66) GGCGGGAA 1 chr18:12948456-12948536 ( 63) GGCGGGAA 1 chr20:34189506-34189586 ( 58) GGCGGGAA 1 chr17:73749982-73750062 ( 22) GGCGGGAA 1 chr17:34890659-34890739 ( 5) GGCGGGAA 1 chr15:49103398-49103478 ( 64) GGCGGGAA 1 chr16:67281561-67281641 ( 20) GGCGGGAA 1 chr1:26799419-26799499 ( 45) GGCGGGAA 1 chr1:33283613-33283693 ( 22) GGCGGGAA 1 chr9:94662792-94662872 ( 59) GGCGGGAA 1 chr5:112312211-112312291 ( 41) GGCGGGAA 1 chr18:658352-658432 ( 65) GGCGGGAA 1 chr16:8962501-8962581 ( 25) GGCGGGAA 1 chrX:53449120-53449200 ( 12) GGCGGGAA 1 chr1:179050805-179050885 ( 25) GGCGGGAA 1 chr12:49524573-49524653 ( 42) GGCGGGAA 1 chr16:11439267-11439347 ( 19) GGCGGGAA 1 chr13:39612471-39612551 ( 22) GGCGGGAA 1 chr19:13262751-13262831 ( 3) GGCGGGAA 1 chr10:115614085-11561416 ( 40) GGCGGGAA 1 chr2:58468530-58468610 ( 22) GGCGGGAA 1 chr4:174255795-174255875 ( 2) GGCGGGAA 1 chr5:176739414-176739494 ( 27) GGCGGGAA 1 chr1:153377278-153377358 ( 47) GGCGGGAA 1 chr2:10184184-10184264 ( 40) GGCGGGAA 1 chr1:46050381-46050461 ( 60) GGCGGGAA 1 chr6:74019470-74019550 ( 47) GGCGGGAA 1 chr6:90539431-90539511 ( 56) GGCGGGAA 1 chr19:10614039-10614119 ( 21) GGCGGGAA 1 chr19:47290103-47290183 ( 27) GGCGGGAA 1 chr15:48624311-48624391 ( 40) GGCGGGAA 1 chr2:7005853-7005933 ( 40) GGCGGGAA 1 chr11:108369180-10836926 ( 18) GGCGGGAA 1 chr16:88870144-88870224 ( 29) GGCGGGAA 1 chr10:69523835-69523915 ( 25) GGCGGGAA 1 chr15:44119179-44119259 ( 18) GGCGGGAA 1 chr19:4909431-4909511 ( 67) CGCGGGAA 1 chr15:91260582-91260662 ( 41) CGCGGGAA 1 chr10:103911838-10391191 ( 21) CGCGGGAA 1 chr1:7844546-7844626 ( 49) CGCGGGAA 1 chr3:148804475-148804555 ( 31) CGCGGGAA 1 chr9:34049537-34049617 ( 25) CGCGGGAA 1 chr17:34838893-34838973 ( 60) CGCGGGAA 1 chr6:33588965-33589045 ( 20) CGCGGGAA 1 chr1:9555495-9555575 ( 4) CGCGGGAA 1 chr19:46431113-46431193 ( 50) CGCGGGAA 1 chr3:13461816-13461896 ( 63) CGCGGGAA 1 chrX:48555460-48555540 ( 47) CGCGGGAA 1 chr14:24664505-24664585 ( 49) CGCGGGAA 1 chr2:113403867-113403947 ( 19) CGCGGGAA 1 chr7:14030716-14030796 ( 45) AGCGGGAA 1 chr17:36858749-36858829 ( 18) AGCGGGAA 1 chr15:56757423-56757503 ( 19) AGCGGGAA 1 chr9:128508518-128508598 ( 31) AGCGGGAA 1 chr6:18264751-18264831 ( 39) AGCGGGAA 1 chr15:69706627-69706707 ( 20) GGCGGGAG 1 chr15:77197824-77197904 ( 20) GGCGGGAG 1 chr15:79237371-79237451 ( 56) GGCGGGAG 1 chr19:5978500-5978580 ( 64) GGCGGGAG 1 chr5:170814470-170814550 ( 57) GGCGGGAG 1 chr1:6296126-6296206 ( 22) GGCGGGAG 1 chr6:18264953-18265033 ( 65) GGCGGGAG 1 chr1:144886688-144886768 ( 54) GGCGGGAG 1 chr11:74303594-74303674 ( 49) GGCGGGAG 1 chr1:28845086-28845166 ( 25) GGCGGGAG 1 chr17:38020402-38020482 ( 65) GGCGGGAG 1 chr20:42295703-42295783 ( 12) GGCGGGAG 1 chr3:196729956-196730036 ( 66) GGCGGGAG 1 chr8:71581578-71581658 ( 33) GGTGGGAA 1 chr9:98079767-98079847 ( 52) CGCGGGAG 1 chr4:6784018-6784098 ( 28) CGCGGGAG 1 chr1:26202168-26202248 ( 31) CGCGGGAG 1 chr22:36903198-36903278 ( 24) CGCGGGAG 1 chr9:136243189-136243269 ( 32) CGCGGGAG 1 chr13:34117054-34117134 ( 55) CGCGGGAG 1 chr17:47755679-47755759 ( 24) CGCGGGAG 1 chr7:100292167-100292247 ( 2) GGCGGGAT 1 chr13:42846025-42846105 ( 4) CGTGGGAA 1 chr12:19592209-19592289 ( 61) CGTGGGAA 1 chr1:26232089-26232169 ( 29) CGTGGGAA 1 chr11:93394711-93394791 ( 40) GGCGGGAC 1 chr19:12998384-12998464 ( 28) GGCGGGAC 1 chr19:16222141-16222221 ( 60) GGCGGGAC 1 chr7:4721701-4721781 ( 69) GGCGGGAC 1 chr19:48867510-48867590 ( 41) GGCGGGAC 1 chr8:143808532-143808612 ( 21) GGCGGGAC 1 chr8:145669773-145669853 ( 36) CGCGGGAT 1 chrX:101187215-101187295 ( 16) CGCGGGAT 1 chr16:47177808-47177888 ( 31) CGCGGGAT 1 chr21:33104584-33104664 ( 60) CGCGGGAT 1 chr15:43622395-43622475 ( 44) CGCGCGAA 1 chr7:20874901-20874981 ( 68) CGCGCGAA 1 chr11:95523069-95523149 ( 28) CGCGCGAA 1 chr16:3019201-3019281 ( 55) CGCGCGAA 1 chr11:64808442-64808522 ( 16) CGCGCGAA 1 chr8:26435185-26435265 ( 42) CGCGCGAA 1 chr20:17949648-17949728 ( 60) CGCGGGAC 1 chr11:134201902-13420198 ( 17) AGTGGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGGGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.6474 E= 3.4e-058 -138 6 78 -1327 -1327 -1327 155 -1327 -1327 149 -1327 -168 -1327 -1327 155 -1327 -1327 -248 146 -1327 -1327 -1327 155 -1327 267 -1327 -1327 -1327 210 -226 -76 -168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGGGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 3.4e-058 0.060606 0.353535 0.585859 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.949495 0.000000 0.050505 0.000000 0.000000 1.000000 0.000000 0.000000 0.060606 0.939394 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.676768 0.070707 0.202020 0.050505 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGGGAA MEME-1 regular expression -------------------------------------------------------------------------------- [GC]GCGGGA[AG] -------------------------------------------------------------------------------- Time 4.95 secs. ******************************************************************************** ******************************************************************************** MOTIF DWTTSAAA MEME-2 width = 8 sites = 56 llr = 507 E-value = 1.0e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif DWTTSAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 43:::aa8 pos.-specific C 1::14::1 probability G 31::4::: matrix T 26a92::1 bits 2.7 * 2.4 * ** 2.1 ** ** 1.9 ** ** Relative 1.6 ** ** Entropy 1.3 *** *** (13.1 bits) 1.1 *** *** 0.8 *** *** 0.5 **** *** 0.3 **** *** 0.0 -------- Multilevel ATTTCAAA consensus GA G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DWTTSAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:51443202-51443282 19 1.33e-06 CTGTCCAAAT ATTTCAAA TTTCCGCGCC chr6:27862272-27862352 1 2.23e-06 . ATTTGAAA AGCCCGCCAA chr5:176739414-176739494 51 2.23e-06 CAGGTTTCAA ATTTGAAA ACCCAAGCGA chr12:98910343-98910423 57 2.23e-06 TCTAACCAAA ATTTGAAA TGAGGAAATT chr1:158985292-158985372 42 3.59e-06 AAAACATTAG TTTTTAAA ACAAAATGAT chr13:42846025-42846105 39 3.59e-06 CTTCTTTCCC TTTTTAAA CGCCCACCCA chr18:658352-658432 22 3.59e-06 CTTCGCAGCG TTTTCAAA AACTGGAGCG chr11:9595083-9595163 63 3.59e-06 CCTCCTTTTT TTTTCAAA CCCGGAGCTG chr17:8113878-8113958 47 3.59e-06 GGCCAAGGAC TTTTCAAA TCTCCCGCCC chr17:34257730-34257810 72 3.59e-06 CGCCCGCGCT TTTTTAAA A chr6:18264751-18264831 12 3.59e-06 ATCAACAAGA TTTTCAAA ATGGCGGTTC chr1:26799419-26799499 29 5.81e-06 GCGGGCGGGC AATTCAAA CCCGAAAGGG chr7:36429398-36429478 45 5.81e-06 TCGGCGCTGA AATTCAAA TTTGAACGGC chr9:124975979-124976059 67 5.81e-06 CGCCCGGCAG TTTTGAAA CCACAC chr16:67596244-67596324 38 5.81e-06 TCGCGCCCGC TTTTGAAA GTTGGCGCCC chr19:44259733-44259813 41 5.81e-06 CAGGGTCGAA AATTTAAA CACACGTGGG chr9:106856555-106856635 30 5.81e-06 CTCGCGCCGA AATTCAAA GGAATAAATA chr10:129924685-12992476 24 5.81e-06 GCGCCCGCCC AATTCAAA CGAAAACGAA chr7:45039377-45039457 3 6.69e-06 CA AATTGAAA AAGTTGGAGC chr4:120987899-120987979 73 9.56e-06 CCCGCCAAGC GTTTCAAA chr12:6960428-6960508 18 9.56e-06 GAAGTTACCA GTTTCAAA CTTCCCGCCA chr15:69706627-69706707 5 1.15e-05 GCCC GTTTGAAA TGCGCCAGGC chr15:49103398-49103478 41 1.15e-05 AAGTACGGCT GTTTGAAA GCGGGCGCCA chr4:174255795-174255875 14 1.15e-05 CGGGAAGAGG GTTTGAAA AATGGCGGGC chr12:2986290-2986370 24 1.15e-05 TTGTTCCGCT GTTTGAAA TTGGCGCCGG chr1:110881518-110881598 39 1.65e-05 CATCCAATCA GATTTAAA CTTCTTTTAG chr7:158497418-158497498 35 1.65e-05 GCTCGGACCA GATTCAAA CGCACCCGCC chr11:58912221-58912301 20 1.65e-05 AAAGGCGGGC GATTCAAA CCCCTAGCCC chr2:97001472-97001552 63 1.89e-05 GACGCGCGCG ATTTAAAA CCAGCTCAGG chr4:178230971-178231051 32 2.16e-05 CGCGCGCGAG ATTTGAAT TTCCTCTGCG chr11:134093854-13409393 3 2.48e-05 AA CTTTCAAA GCTCGCTCCC chr8:27695301-27695381 29 2.48e-05 ACCCTCCTGG CTTTCAAA AAGTCGCGCG chr10:102820459-10282053 20 2.91e-05 TCTTTTTCCT GTTTAAAA TCCGCGGGCT chr7:14030716-14030796 57 3.42e-05 CGGGAACTGC ATTTTAAC CCCGGCCAAG chr9:94662792-94662872 39 4.80e-05 GCATCCAGAA CATTCAAA AGCAGCCAAG chr1:156542300-156542380 39 4.80e-05 CTTCTTCCAG GTTTGAAT CTCCCGCCGT chr9:99181065-99181145 69 4.80e-05 GCGCGCAGGG AGTTTAAA GGGC chr18:47901389-47901469 60 4.80e-05 GCGGCGGGCG GTTTGAAT TTTGCTTACA chr17:61926788-61926868 63 6.61e-05 TGGAACTGCC TTTTGAAC GCGTTCTCAC chr3:186857215-186857295 36 6.61e-05 TGGGCGCAGC AATTCAAC CGCCGCGCGC chr1:12123393-12123473 36 6.90e-05 CCTGGAACCA ATTTGATA CGGGAGAACT chr20:17949648-17949728 46 8.55e-05 GCTGTGCCTA ATTCGAAA CCAAAGCGCG chrX:47518798-47518878 13 8.55e-05 GTGGGGGTGG GATTTAAT GGGATTTGGC chr14:105487535-10548761 5 8.55e-05 CTCT TGTTCAAA CCCACGCGGG chr7:20874901-20874981 11 9.82e-05 ccgcctcaca gattgaat cccaggttcc chr19:49223978-49224058 42 9.82e-05 AGCCCGTGAC ATTTCAAG GTTCGCGCGC chr4:154265782-154265862 30 1.07e-04 GTCGGCGCCA AAATCAAA CGCGTCCTGG chr10:86016897-86016977 62 1.07e-04 GCTCCCGCTG AAATTAAA GCGCGAGTCT chr22:22378234-22378314 27 1.07e-04 atcaagcccc tattcaac atggagtcac chr5:96519536-96519616 57 1.12e-04 GAAGTGGGGA TTTTGATA GTTCGGGCTG chr8:117886993-117887073 65 1.21e-04 CCAAATCCTC GGTTCAAA TCGGCAGG chrX:101187215-101187295 69 1.34e-04 TTGGAGATCT AATCTAAA ACCA chr21:33104789-33104869 35 1.50e-04 AAGGGCGCAG GATTTAAC CTCGGCTCTC chr9:99180865-99180945 14 1.81e-04 GGCCAACAGC GTTCGAAA CTCCAGTGGA chr17:40897353-40897433 4 2.04e-04 AGC GTTTGAAG CCAACCCAGA chr11:95523069-95523149 41 2.60e-04 GCGAAATCCG CTTTGAAC CTGCCCCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DWTTSAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:51443202-51443282 1.3e-06 18_[+2]_54 chr6:27862272-27862352 2.2e-06 [+2]_72 chr5:176739414-176739494 2.2e-06 50_[+2]_22 chr12:98910343-98910423 2.2e-06 56_[+2]_16 chr1:158985292-158985372 3.6e-06 41_[+2]_31 chr13:42846025-42846105 3.6e-06 38_[+2]_34 chr18:658352-658432 3.6e-06 21_[+2]_51 chr11:9595083-9595163 3.6e-06 62_[+2]_10 chr17:8113878-8113958 3.6e-06 46_[+2]_26 chr17:34257730-34257810 3.6e-06 71_[+2]_1 chr6:18264751-18264831 3.6e-06 11_[+2]_61 chr1:26799419-26799499 5.8e-06 28_[+2]_44 chr7:36429398-36429478 5.8e-06 44_[+2]_28 chr9:124975979-124976059 5.8e-06 66_[+2]_6 chr16:67596244-67596324 5.8e-06 37_[+2]_35 chr19:44259733-44259813 5.8e-06 40_[+2]_32 chr9:106856555-106856635 5.8e-06 29_[+2]_43 chr10:129924685-12992476 5.8e-06 23_[+2]_49 chr7:45039377-45039457 6.7e-06 2_[+2]_70 chr4:120987899-120987979 9.6e-06 72_[+2] chr12:6960428-6960508 9.6e-06 17_[+2]_55 chr15:69706627-69706707 1.2e-05 4_[+2]_68 chr15:49103398-49103478 1.2e-05 40_[+2]_32 chr4:174255795-174255875 1.2e-05 13_[+2]_59 chr12:2986290-2986370 1.2e-05 23_[+2]_49 chr1:110881518-110881598 1.7e-05 38_[+2]_34 chr7:158497418-158497498 1.7e-05 34_[+2]_38 chr11:58912221-58912301 1.7e-05 19_[+2]_53 chr2:97001472-97001552 1.9e-05 62_[+2]_10 chr4:178230971-178231051 2.2e-05 31_[+2]_41 chr11:134093854-13409393 2.5e-05 2_[+2]_70 chr8:27695301-27695381 2.5e-05 28_[+2]_44 chr10:102820459-10282053 2.9e-05 19_[+2]_53 chr7:14030716-14030796 3.4e-05 56_[+2]_16 chr9:94662792-94662872 4.8e-05 38_[+2]_34 chr1:156542300-156542380 4.8e-05 38_[+2]_34 chr9:99181065-99181145 4.8e-05 68_[+2]_4 chr18:47901389-47901469 4.8e-05 59_[+2]_13 chr17:61926788-61926868 6.6e-05 62_[+2]_10 chr3:186857215-186857295 6.6e-05 35_[+2]_37 chr1:12123393-12123473 6.9e-05 35_[+2]_37 chr20:17949648-17949728 8.6e-05 45_[+2]_27 chrX:47518798-47518878 8.6e-05 12_[+2]_60 chr14:105487535-10548761 8.6e-05 4_[+2]_68 chr7:20874901-20874981 9.8e-05 10_[+2]_62 chr19:49223978-49224058 9.8e-05 41_[+2]_31 chr4:154265782-154265862 0.00011 29_[+2]_43 chr10:86016897-86016977 0.00011 61_[+2]_11 chr22:22378234-22378314 0.00011 26_[+2]_46 chr5:96519536-96519616 0.00011 56_[+2]_16 chr8:117886993-117887073 0.00012 64_[+2]_8 chrX:101187215-101187295 0.00013 68_[+2]_4 chr21:33104789-33104869 0.00015 34_[+2]_38 chr9:99180865-99180945 0.00018 13_[+2]_59 chr17:40897353-40897433 0.0002 3_[+2]_69 chr11:95523069-95523149 0.00026 40_[+2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DWTTSAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DWTTSAAA width=8 seqs=56 chr1:51443202-51443282 ( 19) ATTTCAAA 1 chr6:27862272-27862352 ( 1) ATTTGAAA 1 chr5:176739414-176739494 ( 51) ATTTGAAA 1 chr12:98910343-98910423 ( 57) ATTTGAAA 1 chr1:158985292-158985372 ( 42) TTTTTAAA 1 chr13:42846025-42846105 ( 39) TTTTTAAA 1 chr18:658352-658432 ( 22) TTTTCAAA 1 chr11:9595083-9595163 ( 63) TTTTCAAA 1 chr17:8113878-8113958 ( 47) TTTTCAAA 1 chr17:34257730-34257810 ( 72) TTTTTAAA 1 chr6:18264751-18264831 ( 12) TTTTCAAA 1 chr1:26799419-26799499 ( 29) AATTCAAA 1 chr7:36429398-36429478 ( 45) AATTCAAA 1 chr9:124975979-124976059 ( 67) TTTTGAAA 1 chr16:67596244-67596324 ( 38) TTTTGAAA 1 chr19:44259733-44259813 ( 41) AATTTAAA 1 chr9:106856555-106856635 ( 30) AATTCAAA 1 chr10:129924685-12992476 ( 24) AATTCAAA 1 chr7:45039377-45039457 ( 3) AATTGAAA 1 chr4:120987899-120987979 ( 73) GTTTCAAA 1 chr12:6960428-6960508 ( 18) GTTTCAAA 1 chr15:69706627-69706707 ( 5) GTTTGAAA 1 chr15:49103398-49103478 ( 41) GTTTGAAA 1 chr4:174255795-174255875 ( 14) GTTTGAAA 1 chr12:2986290-2986370 ( 24) GTTTGAAA 1 chr1:110881518-110881598 ( 39) GATTTAAA 1 chr7:158497418-158497498 ( 35) GATTCAAA 1 chr11:58912221-58912301 ( 20) GATTCAAA 1 chr2:97001472-97001552 ( 63) ATTTAAAA 1 chr4:178230971-178231051 ( 32) ATTTGAAT 1 chr11:134093854-13409393 ( 3) CTTTCAAA 1 chr8:27695301-27695381 ( 29) CTTTCAAA 1 chr10:102820459-10282053 ( 20) GTTTAAAA 1 chr7:14030716-14030796 ( 57) ATTTTAAC 1 chr9:94662792-94662872 ( 39) CATTCAAA 1 chr1:156542300-156542380 ( 39) GTTTGAAT 1 chr9:99181065-99181145 ( 69) AGTTTAAA 1 chr18:47901389-47901469 ( 60) GTTTGAAT 1 chr17:61926788-61926868 ( 63) TTTTGAAC 1 chr3:186857215-186857295 ( 36) AATTCAAC 1 chr1:12123393-12123473 ( 36) ATTTGATA 1 chr20:17949648-17949728 ( 46) ATTCGAAA 1 chrX:47518798-47518878 ( 13) GATTTAAT 1 chr14:105487535-10548761 ( 5) TGTTCAAA 1 chr7:20874901-20874981 ( 11) GATTGAAT 1 chr19:49223978-49224058 ( 42) ATTTCAAG 1 chr4:154265782-154265862 ( 30) AAATCAAA 1 chr10:86016897-86016977 ( 62) AAATTAAA 1 chr22:22378234-22378314 ( 27) TATTCAAC 1 chr5:96519536-96519616 ( 57) TTTTGATA 1 chr8:117886993-117887073 ( 65) GGTTCAAA 1 chrX:101187215-101187295 ( 69) AATCTAAA 1 chr21:33104789-33104869 ( 35) GATTTAAC 1 chr9:99180865-99180945 ( 14) GTTCGAAA 1 chr17:40897353-40897433 ( 4) GTTTGAAG 1 chr11:95523069-95523149 ( 41) CTTTGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DWTTSAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 1.0e-042 125 -225 -9 52 103 -1245 -267 194 -214 -1245 -1245 257 -1245 -266 -1245 254 -214 21 14 27 267 -1245 -1245 -1245 261 -1245 -1245 -218 229 -166 -325 -86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DWTTSAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.0e-042 0.375000 0.071429 0.321429 0.232143 0.321429 0.000000 0.053571 0.625000 0.035714 0.000000 0.000000 0.964286 0.000000 0.053571 0.000000 0.946429 0.035714 0.392857 0.375000 0.196429 1.000000 0.000000 0.000000 0.000000 0.964286 0.000000 0.000000 0.035714 0.767857 0.107143 0.035714 0.089286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DWTTSAAA MEME-2 regular expression -------------------------------------------------------------------------------- [AGT][TA]TT[CG]AAA -------------------------------------------------------------------------------- Time 8.57 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTCCCGC MEME-3 width = 8 sites = 75 llr = 615 E-value = 1.3e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTCCCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 33:aaa:a probability G 2:::::9: matrix T 47a:::1: bits 2.7 * 2.4 * 2.1 * 1.9 * Relative 1.6 ***** * Entropy 1.3 ******* (11.8 bits) 1.1 ******* 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TTTCCCGC consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCCCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:158497418-158497498 17 1.91e-05 GGACCCGCCG TTTCCCGC GCTCGGACCA chr13:115000227-11500030 71 1.91e-05 TCGGGTCCGT TTTCCCGC GC chr10:103911838-10391191 38 1.91e-05 AGTCCCGAGT TTTCCCGC CACGCCGAGG chr16:68118440-68118520 69 1.91e-05 CACAACGGGC TTTCCCGC TCAA chr9:37079446-37079526 21 1.91e-05 CACGGAGGCG TTTCCCGC TCCAGGGCTG chr12:49524573-49524653 26 1.91e-05 GCAGTGGCGG TTTCCCGC CCAGGAGCGG chr2:61035706-61035786 69 1.91e-05 ctttTACGTT TTTCCCGC CCTG chr19:55987564-55987644 67 1.91e-05 CAGGCCTCGT TTTCCCGC TGGAGC chr19:56015141-56015221 36 1.91e-05 GCAAGCGTCC TTTCCCGC CTTTTTTTTT chr3:155589163-155589243 34 1.91e-05 CGCCACCCCG TTTCCCGC CTGCCCTCGG chr19:5978296-5978376 35 1.91e-05 CCCGCCTCCT TTTCCCGC CGACTGAGAG chr11:58912221-58912301 49 1.91e-05 ACCTGCTCCG TTTCCCGC CCAGCTGGAG chr9:99180662-99180742 4 1.91e-05 GCT TTTCCCGC GTTACATTTC chr2:48010276-48010356 11 1.91e-05 TCCCCCCAGA TTTCCCGC CAGCAGGAGC chr20:34359695-34359775 71 1.91e-05 CGCGGGCCTG TTTCCCGC GC chr16:29984724-29984804 61 1.91e-05 AGCAGTCTAT TTTCCCGC CTTTTCCGCG chr19:16222141-16222221 13 1.91e-05 GCTACCTTGC TTTCCCGC GCTCGCCTCG chr16:85722529-85722609 55 1.91e-05 CGGCCGCCGT TTTCCCGC CACGGCGAGA chr11:74303594-74303674 40 1.91e-05 AGCAAAGACG TTTCCCGC CGGCGGGAGC chr1:91966548-91966628 53 1.91e-05 TGCAGTTCCT TTTCCCGC CCCCCTTCGG chr11:108369180-10836926 46 1.91e-05 GCAGGCTCCC TTTCCCGC CCGCTGTCCC chr21:33104584-33104664 2 1.91e-05 C TTTcccgc cggcggcggc chr13:103046906-10304698 30 5.92e-05 GCAACGGAAA CTTCCCGC GCTACGGCGG chr11:113535999-11353607 41 5.92e-05 tgtaacggct cttcccgc caaagctgtc chr1:247681691-247681771 42 5.92e-05 AGCGCCCGGC CTTCCCGC GCGGCTGCCG chr1:51434298-51434378 45 5.92e-05 ggCGCCCGGC CTTCCCGC TCCCGCGGCG chr6:28186810-28186890 56 5.92e-05 CGACCCGCAC CTTCCCGC GCCCCGGCCC chr12:6960428-6960508 26 5.92e-05 CAGTTTCAAA CTTCCCGC CACGCCCCCT chr21:34960950-34961030 38 5.92e-05 CCTACAGAGA CTTcccgc gcgcgccggg chr19:797790-797870 38 5.92e-05 gcgcgcggcc cttcccgc ttcccgtccg chr19:10614039-10614119 50 5.92e-05 TTCTCCCGCC CTTCCCGC AGGTGCCCGG chr8:145669773-145669853 49 5.92e-05 GGGATCCGGA CTTCccgc gctgcgccgc chr6:34203277-34203357 41 5.92e-05 GCCCCGAGCG CTTCCCGC CGCACGGGTG chr15:66914644-66914724 22 5.92e-05 GGCCGGGCCc cttcccgc cttcccgcct chr14:24664505-24664585 19 5.92e-05 CCTCGGGTCC CTTCCCGC CACAGCCCCG chr14:105487535-10548761 42 5.92e-05 TGTGGCGCGT CTTCCCGC GCTGCGGCGA chr3:186524208-186524288 34 1.18e-04 AGTCGCCTCA GTTCCCGC CACGGAACGG chr11:17297810-17297890 18 1.18e-04 TGCCGTTAAG ATTCCCGC CAAGGCGGAG chr2:128284344-128284424 64 1.18e-04 GAGGCGCCTG GTTCCCGC CCGCAGTAG chr11:93394711-93394791 55 1.18e-04 GACAGGGCCT ATTCCCGC GGTTTGGTCC chr4:103790012-103790092 15 1.18e-04 CTACCCGCCA GTTCCCGC GCCTCGGCAG chr7:92053715-92053795 64 1.18e-04 CGGCTCCCAG ATTCCCGC CTCTGTCTG chr6:97731027-97731107 33 1.18e-04 AACAGGCGAA ATTCCCGC CACCGCGCGC chr10:115614085-11561416 51 1.18e-04 GCGGGAACAA GTTCCCGC TGCCAGTGCC chr15:68521698-68521778 46 1.18e-04 CGCACACGAG GTTCCCGC CCGGCAGCCC chr9:99181065-99181145 53 1.18e-04 TTGGGCCGCG GTTCCCGC GCGCAGGGAG chr12:98910343-98910423 72 1.18e-04 AAATGAGGAA ATTCCCGC C chr5:149737609-149737689 65 1.18e-04 GAACTTTGTA ATTCCCGC TTCCCTTA chr11:9595083-9595163 2 1.18e-04 G GTTCCCGC CAAAATCGCG chr10:70231504-70231584 3 1.58e-04 AA TCTCCCGC TTTGTTCCCA chr5:176739414-176739494 1 1.58e-04 . TCTCCCGC CGCTGATCCA chr13:34117054-34117134 3 1.58e-04 TT TCTCCCGC CCTGGACGGG chr16:30006897-30006977 17 1.58e-04 TGCATCTCCT TCTCCCGC GCCATTTTGC chr8:145743179-145743259 36 1.58e-04 GTCCAGCGAA TCTCCCGC GCAGCCGTCG chr17:8113878-8113958 55 1.58e-04 ACTTTTCAAA TCTCCCGC CCCGGCCCCA chr2:219433227-219433307 40 1.67e-04 CCCCCCACCA TTTCCCTC CTACGCAACC chr2:74757717-74757797 11 1.67e-04 TTATCTGTGC TTTCCCTC CATTTCAGGC chr7:20874901-20874981 54 2.51e-04 gggccaagct cctcccgc tgcaaacgcg chr12:50101421-50101501 44 2.51e-04 AATCACAGCG CCTCCCGC CCTTGACGGC chr13:110439146-11043922 10 2.51e-04 TCCCCTCCC CCTCCCGC GAAggccccg chr7:158799100-158799180 58 2.51e-04 AAGAGGACGG CCTCCCGC GCGCTGCCTG chr6:74019470-74019550 23 2.51e-04 TAGTACAGCT CCTCCCGC CACCGCAGAG chr15:44119179-44119259 1 2.51e-04 . CCTCCCGC CGCAATCTTG chr14:105864512-10586459 38 2.51e-04 GCAGCGCCTC CCTcccgc ccgcgcgccc chr1:26799419-26799499 3 2.70e-04 CC CTTCCCTC CCCTCCCTGC chr1:46050381-46050461 18 2.70e-04 CGTGCGTTCG CTTCCCTC GCCGGCCCTG chr1:53926171-53926251 38 2.70e-04 CTGCGCACCT CTTCCCTC CGTTTCCCCA chr18:12948456-12948536 7 3.94e-04 GTGCGC GCTCCCGC CCGCAGGGTA chr7:155089337-155089417 14 3.94e-04 CCGTGCCGAG GCTCCCGC CCGAGTGCGC chr4:6784018-6784098 69 3.94e-04 ACGCTGGGGG GCTCCCGC TTCC chr1:41445684-41445764 22 3.94e-04 cgagctgccg gctcccgc gcgcgggcct chr11:134093854-13409393 15 3.94e-04 TTCAAAGCTC GCTCCCGC GCGCGCGCCG chr10:86016897-86016977 52 3.94e-04 GAACTTGGCA GCTCCCGC TGAAATTAAA chr7:45039377-45039457 34 3.94e-04 tcccgcgcgc gctcccgc gcgcgctGAG chr15:41055583-41055663 36 4.50e-04 CTTTACAGAC TTTCCTGC GGGTCCACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCCCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:158497418-158497498 1.9e-05 16_[+3]_56 chr13:115000227-11500030 1.9e-05 70_[+3]_2 chr10:103911838-10391191 1.9e-05 37_[+3]_35 chr16:68118440-68118520 1.9e-05 68_[+3]_4 chr9:37079446-37079526 1.9e-05 20_[+3]_52 chr12:49524573-49524653 1.9e-05 25_[+3]_47 chr2:61035706-61035786 1.9e-05 68_[+3]_4 chr19:55987564-55987644 1.9e-05 66_[+3]_6 chr19:56015141-56015221 1.9e-05 35_[+3]_37 chr3:155589163-155589243 1.9e-05 33_[+3]_39 chr19:5978296-5978376 1.9e-05 34_[+3]_38 chr11:58912221-58912301 1.9e-05 48_[+3]_24 chr9:99180662-99180742 1.9e-05 3_[+3]_69 chr2:48010276-48010356 1.9e-05 10_[+3]_62 chr20:34359695-34359775 1.9e-05 70_[+3]_2 chr16:29984724-29984804 1.9e-05 60_[+3]_12 chr19:16222141-16222221 1.9e-05 12_[+3]_60 chr16:85722529-85722609 1.9e-05 54_[+3]_18 chr11:74303594-74303674 1.9e-05 39_[+3]_33 chr1:91966548-91966628 1.9e-05 52_[+3]_20 chr11:108369180-10836926 1.9e-05 45_[+3]_27 chr21:33104584-33104664 1.9e-05 1_[+3]_71 chr13:103046906-10304698 5.9e-05 29_[+3]_43 chr11:113535999-11353607 5.9e-05 40_[+3]_32 chr1:247681691-247681771 5.9e-05 41_[+3]_31 chr1:51434298-51434378 5.9e-05 44_[+3]_28 chr6:28186810-28186890 5.9e-05 55_[+3]_17 chr12:6960428-6960508 5.9e-05 25_[+3]_47 chr21:34960950-34961030 5.9e-05 37_[+3]_35 chr19:797790-797870 5.9e-05 37_[+3]_35 chr19:10614039-10614119 5.9e-05 49_[+3]_23 chr8:145669773-145669853 5.9e-05 48_[+3]_24 chr6:34203277-34203357 5.9e-05 40_[+3]_32 chr15:66914644-66914724 5.9e-05 21_[+3]_51 chr14:24664505-24664585 5.9e-05 18_[+3]_54 chr14:105487535-10548761 5.9e-05 41_[+3]_31 chr3:186524208-186524288 0.00012 33_[+3]_39 chr11:17297810-17297890 0.00012 17_[+3]_55 chr2:128284344-128284424 0.00012 63_[+3]_9 chr11:93394711-93394791 0.00012 54_[+3]_18 chr4:103790012-103790092 0.00012 14_[+3]_58 chr7:92053715-92053795 0.00012 63_[+3]_9 chr6:97731027-97731107 0.00012 32_[+3]_40 chr10:115614085-11561416 0.00012 50_[+3]_22 chr15:68521698-68521778 0.00012 45_[+3]_27 chr9:99181065-99181145 0.00012 52_[+3]_20 chr12:98910343-98910423 0.00012 71_[+3]_1 chr5:149737609-149737689 0.00012 64_[+3]_8 chr11:9595083-9595163 0.00012 1_[+3]_71 chr10:70231504-70231584 0.00016 2_[+3]_70 chr5:176739414-176739494 0.00016 [+3]_72 chr13:34117054-34117134 0.00016 2_[+3]_70 chr16:30006897-30006977 0.00016 16_[+3]_56 chr8:145743179-145743259 0.00016 35_[+3]_37 chr17:8113878-8113958 0.00016 54_[+3]_18 chr2:219433227-219433307 0.00017 39_[+3]_33 chr2:74757717-74757797 0.00017 10_[+3]_62 chr7:20874901-20874981 0.00025 53_[+3]_19 chr12:50101421-50101501 0.00025 43_[+3]_29 chr13:110439146-11043922 0.00025 9_[+3]_63 chr7:158799100-158799180 0.00025 57_[+3]_15 chr6:74019470-74019550 0.00025 22_[+3]_50 chr15:44119179-44119259 0.00025 [+3]_72 chr14:105864512-10586459 0.00025 37_[+3]_35 chr1:26799419-26799499 0.00027 2_[+3]_70 chr1:46050381-46050461 0.00027 17_[+3]_55 chr1:53926171-53926251 0.00027 37_[+3]_35 chr18:12948456-12948536 0.00039 6_[+3]_66 chr7:155089337-155089417 0.00039 13_[+3]_59 chr4:6784018-6784098 0.00039 68_[+3]_4 chr1:41445684-41445764 0.00039 21_[+3]_51 chr11:134093854-13409393 0.00039 14_[+3]_58 chr10:86016897-86016977 0.00039 51_[+3]_21 chr7:45039377-45039457 0.00039 33_[+3]_39 chr15:41055583-41055663 0.00045 35_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCCCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTCCCGC width=8 seqs=75 chr7:158497418-158497498 ( 17) TTTCCCGC 1 chr13:115000227-11500030 ( 71) TTTCCCGC 1 chr10:103911838-10391191 ( 38) TTTCCCGC 1 chr16:68118440-68118520 ( 69) TTTCCCGC 1 chr9:37079446-37079526 ( 21) TTTCCCGC 1 chr12:49524573-49524653 ( 26) TTTCCCGC 1 chr2:61035706-61035786 ( 69) TTTCCCGC 1 chr19:55987564-55987644 ( 67) TTTCCCGC 1 chr19:56015141-56015221 ( 36) TTTCCCGC 1 chr3:155589163-155589243 ( 34) TTTCCCGC 1 chr19:5978296-5978376 ( 35) TTTCCCGC 1 chr11:58912221-58912301 ( 49) TTTCCCGC 1 chr9:99180662-99180742 ( 4) TTTCCCGC 1 chr2:48010276-48010356 ( 11) TTTCCCGC 1 chr20:34359695-34359775 ( 71) TTTCCCGC 1 chr16:29984724-29984804 ( 61) TTTCCCGC 1 chr19:16222141-16222221 ( 13) TTTCCCGC 1 chr16:85722529-85722609 ( 55) TTTCCCGC 1 chr11:74303594-74303674 ( 40) TTTCCCGC 1 chr1:91966548-91966628 ( 53) TTTCCCGC 1 chr11:108369180-10836926 ( 46) TTTCCCGC 1 chr21:33104584-33104664 ( 2) TTTCCCGC 1 chr13:103046906-10304698 ( 30) CTTCCCGC 1 chr11:113535999-11353607 ( 41) CTTCCCGC 1 chr1:247681691-247681771 ( 42) CTTCCCGC 1 chr1:51434298-51434378 ( 45) CTTCCCGC 1 chr6:28186810-28186890 ( 56) CTTCCCGC 1 chr12:6960428-6960508 ( 26) CTTCCCGC 1 chr21:34960950-34961030 ( 38) CTTCCCGC 1 chr19:797790-797870 ( 38) CTTCCCGC 1 chr19:10614039-10614119 ( 50) CTTCCCGC 1 chr8:145669773-145669853 ( 49) CTTCCCGC 1 chr6:34203277-34203357 ( 41) CTTCCCGC 1 chr15:66914644-66914724 ( 22) CTTCCCGC 1 chr14:24664505-24664585 ( 19) CTTCCCGC 1 chr14:105487535-10548761 ( 42) CTTCCCGC 1 chr3:186524208-186524288 ( 34) GTTCCCGC 1 chr11:17297810-17297890 ( 18) ATTCCCGC 1 chr2:128284344-128284424 ( 64) GTTCCCGC 1 chr11:93394711-93394791 ( 55) ATTCCCGC 1 chr4:103790012-103790092 ( 15) GTTCCCGC 1 chr7:92053715-92053795 ( 64) ATTCCCGC 1 chr6:97731027-97731107 ( 33) ATTCCCGC 1 chr10:115614085-11561416 ( 51) GTTCCCGC 1 chr15:68521698-68521778 ( 46) GTTCCCGC 1 chr9:99181065-99181145 ( 53) GTTCCCGC 1 chr12:98910343-98910423 ( 72) ATTCCCGC 1 chr5:149737609-149737689 ( 65) ATTCCCGC 1 chr11:9595083-9595163 ( 2) GTTCCCGC 1 chr10:70231504-70231584 ( 3) TCTCCCGC 1 chr5:176739414-176739494 ( 1) TCTCCCGC 1 chr13:34117054-34117134 ( 3) TCTCCCGC 1 chr16:30006897-30006977 ( 17) TCTCCCGC 1 chr8:145743179-145743259 ( 36) TCTCCCGC 1 chr17:8113878-8113958 ( 55) TCTCCCGC 1 chr2:219433227-219433307 ( 40) TTTCCCTC 1 chr2:74757717-74757797 ( 11) TTTCCCTC 1 chr7:20874901-20874981 ( 54) CCTCCCGC 1 chr12:50101421-50101501 ( 44) CCTCCCGC 1 chr13:110439146-11043922 ( 10) CCTCCCGC 1 chr7:158799100-158799180 ( 58) CCTCCCGC 1 chr6:74019470-74019550 ( 23) CCTCCCGC 1 chr15:44119179-44119259 ( 1) CCTCCCGC 1 chr14:105864512-10586459 ( 38) CCTCCCGC 1 chr1:26799419-26799499 ( 3) CTTCCCTC 1 chr1:46050381-46050461 ( 18) CTTCCCTC 1 chr1:53926171-53926251 ( 38) CTTCCCTC 1 chr18:12948456-12948536 ( 7) GCTCCCGC 1 chr7:155089337-155089417 ( 14) GCTCCCGC 1 chr4:6784018-6784098 ( 69) GCTCCCGC 1 chr1:41445684-41445764 ( 22) GCTCCCGC 1 chr11:134093854-13409393 ( 15) GCTCCCGC 1 chr10:86016897-86016977 ( 52) GCTCCCGC 1 chr7:45039377-45039457 ( 34) GCTCCCGC 1 chr15:41055583-41055663 ( 36) TTTCCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCCCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.3564 E= 1.3e-042 -98 -8 -87 135 -1287 -35 -1287 217 -1287 -1287 -1287 262 -1287 156 -1287 -1287 -1287 156 -1287 -1287 -1287 154 -1287 -360 -1287 -1287 145 -128 -1287 156 -1287 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCCCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 1.3e-042 0.080000 0.320000 0.186667 0.413333 0.000000 0.266667 0.000000 0.733333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.986667 0.000000 0.013333 0.000000 0.000000 0.933333 0.066667 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCCCGC MEME-3 regular expression -------------------------------------------------------------------------------- [TC][TC]TCCCGC -------------------------------------------------------------------------------- Time 12.11 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYTTTTT MEME-4 width = 8 sites = 15 llr = 158 E-value = 6.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::1::1 pos.-specific C :15:::12 probability G :11::::: matrix T a75a9a97 bits 2.7 * * * 2.4 * *** 2.1 * *** 1.9 * **** Relative 1.6 * **** Entropy 1.3 ** **** (15.2 bits) 1.1 ** ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTCTTTTT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:56015141-56015221 46 4.74e-07 TTTCCCGCCT TTTTTTTT TCTGGCGCTC chr1:23857707-23857787 24 4.74e-07 TCTCTGCCTC tttttttt cttctttttt chr6:90539431-90539511 36 4.74e-07 CCAACCGTGT TTTTTTTT TTCCCTTCCA chr10:102820459-10282053 9 1.47e-06 TCCGCCCT TTCTTTTT CCTGTTTAAA chr13:42846025-42846105 15 2.92e-06 GTGGGAAGGC TTTTTTTC CTGTTCCTTC chr16:30006897-30006977 61 2.92e-06 GGCTCCCGCC TTTTTTTC TTCTCGGCCT chr1:110881518-110881598 48 3.89e-06 AGATTTAAAC TTCTTTTA GCCGCCGGAG chr12:54673883-54673963 67 7.34e-06 GGACCGGACC TTTTTTCT CCGCCC chr1:51443202-51443282 53 7.34e-06 AACAGTCTCC TTTTATTT AGTTAGTTTC chr6:27862272-27862352 51 1.04e-05 CTCATCCGGG TTGTTTTT CGAAGAGGTT chr9:124975979-124976059 43 1.46e-05 TTGCGGCGTG TGCTTTTT ATGACGCGCC chr11:9595083-9595163 55 1.46e-05 CGTCGCGCCC TCCTTTTT TTTTCAAACC chr20:32274169-32274249 43 1.46e-05 ACGCGCCAAA TCCTTTTT GCCGCGAAAG chr2:48010276-48010356 45 3.53e-05 GTAGATGCGG TGCTTTTA GGAGCTCCGT chr16:88870144-88870224 62 6.77e-05 CCTCCCTTCC TTCTTTCC TTGCTTTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:56015141-56015221 4.7e-07 45_[+4]_27 chr1:23857707-23857787 4.7e-07 23_[+4]_49 chr6:90539431-90539511 4.7e-07 35_[+4]_37 chr10:102820459-10282053 1.5e-06 8_[+4]_64 chr13:42846025-42846105 2.9e-06 14_[+4]_58 chr16:30006897-30006977 2.9e-06 60_[+4]_12 chr1:110881518-110881598 3.9e-06 47_[+4]_25 chr12:54673883-54673963 7.3e-06 66_[+4]_6 chr1:51443202-51443282 7.3e-06 52_[+4]_20 chr6:27862272-27862352 1e-05 50_[+4]_22 chr9:124975979-124976059 1.5e-05 42_[+4]_30 chr11:9595083-9595163 1.5e-05 54_[+4]_18 chr20:32274169-32274249 1.5e-05 42_[+4]_30 chr2:48010276-48010356 3.5e-05 44_[+4]_28 chr16:88870144-88870224 6.8e-05 61_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTTTTT width=8 seqs=15 chr19:56015141-56015221 ( 46) TTTTTTTT 1 chr1:23857707-23857787 ( 24) TTTTTTTT 1 chr6:90539431-90539511 ( 36) TTTTTTTT 1 chr10:102820459-10282053 ( 9) TTCTTTTT 1 chr13:42846025-42846105 ( 15) TTTTTTTC 1 chr16:30006897-30006977 ( 61) TTTTTTTC 1 chr1:110881518-110881598 ( 48) TTCTTTTA 1 chr12:54673883-54673963 ( 67) TTTTTTCT 1 chr1:51443202-51443282 ( 53) TTTTATTT 1 chr6:27862272-27862352 ( 51) TTGTTTTT 1 chr9:124975979-124976059 ( 43) TGCTTTTT 1 chr11:9595083-9595163 ( 55) TCCTTTTT 1 chr20:32274169-32274249 ( 43) TCCTTTTT 1 chr2:48010276-48010356 ( 45) TGCTTTTA 1 chr16:88870144-88870224 ( 62) TTCTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 6.5e-004 -1055 -1055 -1055 262 -1055 -134 -135 217 -1055 46 -235 152 -1055 -1055 -1055 262 -124 -1055 -1055 252 -1055 -1055 -1055 262 -1055 -134 -1055 241 -24 -76 -1055 204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 6.5e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.133333 0.133333 0.733333 0.000000 0.466667 0.066667 0.466667 0.000000 0.000000 0.000000 1.000000 0.066667 0.000000 0.000000 0.933333 0.000000 0.000000 0.000000 1.000000 0.000000 0.133333 0.000000 0.866667 0.133333 0.200000 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[CT]TTTT[TC] -------------------------------------------------------------------------------- Time 15.53 secs. ******************************************************************************** ******************************************************************************** MOTIF HAAAYARA MEME-5 width = 8 sites = 10 llr = 109 E-value = 2.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif HAAAYARA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3aaa:a69 pos.-specific C 4:::5::1 probability G ::::::4: matrix T 3:::5::: bits 2.7 *** * 2.4 *** * 2.1 *** * * 1.9 *** * * Relative 1.6 *** * * Entropy 1.3 *** *** (15.7 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAAACAAA consensus A T G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAAYARA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:26188753-26188833 41 8.07e-07 agcaagaGTG AAAATAAA CTTTAATACA chr3:49377795-49377875 66 8.07e-07 ATCGTGGTCC TAAATAAA TGCAGGC chr16:4323047-4323127 52 3.35e-06 GAATTGCATG TAAACAAA GGACTATTTG chr15:43622395-43622475 2 5.09e-06 G AAAATAGA GCGAGTCGAA chr4:120987899-120987979 2 6.88e-06 A CAAACAAA AGCACGCGCT chr8:117886993-117887073 9 6.88e-06 GATTCACT CAAACAAA CAAGATGGCT chr17:47755679-47755759 53 8.72e-06 GTGCGAGGAC CAAATAGA GGCGTAACAA chr19:47290103-47290183 45 1.24e-05 GCGGAGGCCA AAAACAGA GCCTGGTTAT chr14:105487735-10548781 68 1.62e-05 CGTGGCGGGG CAAACAGA GGTTT chr1:51443202-51443282 38 1.80e-05 TTCCGCGCCT TAAATAAC AGTCTCCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAAYARA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26188753-26188833 8.1e-07 40_[+5]_32 chr3:49377795-49377875 8.1e-07 65_[+5]_7 chr16:4323047-4323127 3.3e-06 51_[+5]_21 chr15:43622395-43622475 5.1e-06 1_[+5]_71 chr4:120987899-120987979 6.9e-06 1_[+5]_71 chr8:117886993-117887073 6.9e-06 8_[+5]_64 chr17:47755679-47755759 8.7e-06 52_[+5]_20 chr19:47290103-47290183 1.2e-05 44_[+5]_28 chr14:105487735-10548781 1.6e-05 67_[+5]_5 chr1:51443202-51443282 1.8e-05 37_[+5]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAAYARA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HAAAYARA width=8 seqs=10 chr6:26188753-26188833 ( 41) AAAATAAA 1 chr3:49377795-49377875 ( 66) TAAATAAA 1 chr16:4323047-4323127 ( 52) TAAACAAA 1 chr15:43622395-43622475 ( 2) AAAATAGA 1 chr4:120987899-120987979 ( 2) CAAACAAA 1 chr8:117886993-117887073 ( 9) CAAACAAA 1 chr17:47755679-47755759 ( 53) CAAATAGA 1 chr19:47290103-47290183 ( 45) AAAACAGA 1 chr14:105487735-10548781 ( 68) CAAACAGA 1 chr1:51443202-51443282 ( 38) TAAATAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAAYARA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 2.7e+000 93 24 -997 88 267 -997 -997 -997 267 -997 -997 -997 267 -997 -997 -997 -997 56 -997 162 267 -997 -997 -997 193 -997 23 -997 251 -176 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAAYARA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.7e+000 0.300000 0.400000 0.000000 0.300000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.900000 0.100000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAAYARA MEME-5 regular expression -------------------------------------------------------------------------------- [CAT]AAA[CT]A[AG]A -------------------------------------------------------------------------------- Time 18.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:196729956-196730036 1.39e-01 80 chr20:42295703-42295783 1.01e-02 80 chr14:105487535-10548761 4.56e-04 4_[+2(8.55e-05)]_29_[+3(5.92e-05)]_\ 31 chr1:23670433-23670513 9.48e-01 80 chr14:105864512-10586459 5.19e-01 80 chr3:56717401-56717481 9.97e-01 80 chr21:33104584-33104664 2.57e-02 1_[+3(1.91e-05)]_71 chr22:43253434-43253514 9.72e-01 80 chr2:113403867-113403947 2.01e-02 18_[+1(7.78e-05)]_54 chr15:44119179-44119259 1.33e-02 17_[+1(3.90e-05)]_55 chr6:18264751-18264831 2.41e-04 11_[+2(3.59e-06)]_19_[+1(9.59e-05)]_\ 34 chr10:69523835-69523915 3.39e-02 24_[+1(3.90e-05)]_48 chr17:38020402-38020482 1.41e-01 80 chr14:24664505-24664585 7.79e-03 18_[+3(5.92e-05)]_22_[+1(7.78e-05)]_\ 24 chr17:47755679-47755759 3.00e-03 52_[+5(8.72e-06)]_20 chr10:129924685-12992476 3.54e-04 23_[+2(5.81e-06)]_10_[+2(1.65e-05)]_\ 31 chr16:88870144-88870224 1.16e-03 16_[+1(7.78e-05)]_4_[+1(3.90e-05)]_\ 25_[+4(6.77e-05)]_11 chr1:53926171-53926251 2.50e-01 80 chr11:108369180-10836926 6.77e-04 17_[+1(3.90e-05)]_20_[+3(1.91e-05)]_\ 27 chr17:77776547-77776627 8.87e-01 80 chrX:48555460-48555540 1.04e-01 46_[+1(7.78e-05)]_26 chr1:226309716-226309796 3.43e-01 80 chr12:2986290-2986370 1.56e-02 23_[+2(1.15e-05)]_49 chr1:43638438-43638518 4.27e-02 80 chr2:7005853-7005933 1.42e-02 39_[+1(3.90e-05)]_33 chr15:66914644-66914724 3.56e-01 21_[+3(5.92e-05)]_[+3(5.92e-05)]_\ [+3(5.92e-05)]_[+3(5.92e-05)]_27 chr1:1167884-1167964 9.80e-01 80 chr15:48624311-48624391 5.61e-02 39_[+1(3.90e-05)]_33 chr17:7819224-7819304 9.87e-01 80 chr19:47290103-47290183 1.06e-03 26_[+1(3.90e-05)]_10_[+5(1.24e-05)]_\ 28 chr16:28891368-28891448 6.02e-01 80 chr9:106856555-106856635 1.61e-04 29_[+2(5.81e-06)]_43 chr6:34203277-34203357 2.44e-01 40_[+3(5.92e-05)]_32 chr1:28845086-28845166 1.22e-03 31_[+2(1.65e-05)]_41 chr8:26435185-26435265 1.99e-01 80 chr16:4323047-4323127 2.95e-03 51_[+5(3.35e-06)]_21 chr16:47177808-47177888 6.26e-02 80 chr15:89787506-89787586 3.70e-01 80 chr11:19262888-19262968 8.92e-01 80 chrX:101187215-101187295 5.30e-03 80 chr11:64808442-64808522 2.89e-01 80 chr8:145669773-145669853 6.03e-02 48_[+3(5.92e-05)]_24 chr3:127347754-127347834 8.37e-01 80 chr19:10614039-10614119 6.73e-03 20_[+1(3.90e-05)]_21_[+3(5.92e-05)]_\ 23 chr17:40897151-40897231 1.99e-02 80 chr17:34257730-34257810 3.13e-03 71_[+2(3.59e-06)]_1 chr8:143808532-143808612 5.93e-01 80 chr1:7844347-7844427 9.99e-01 80 chr11:19262682-19262762 7.52e-01 80 chr11:61276991-61277071 9.95e-01 80 chr19:1568503-1568583 6.57e-01 80 chr19:48867510-48867590 1.15e-01 80 chr6:90539431-90539511 2.37e-06 34_[+4(4.74e-07)]_13_[+1(3.90e-05)]_\ 17 chr7:4721701-4721781 5.05e-01 80 chr20:32274169-32274249 6.13e-03 42_[+4(1.46e-05)]_30 chr1:91966548-91966628 1.40e-03 52_[+3(1.91e-05)]_20 chr6:74019470-74019550 1.41e-02 46_[+1(3.90e-05)]_26 chr1:46050381-46050461 8.01e-03 59_[+1(3.90e-05)]_13 chr19:797790-797870 2.66e-01 37_[+3(5.92e-05)]_35 chr2:10184184-10184264 2.39e-01 39_[+1(3.90e-05)]_33 chr1:23857707-23857787 1.44e-03 23_[+4(4.74e-07)]_4_[+4(4.74e-07)]_\ [+4(4.74e-07)]_29 chr16:28891573-28891653 1.47e-01 80 chr8:27695301-27695381 2.18e-02 28_[+2(2.48e-05)]_44 chr21:34960950-34961030 1.24e-01 37_[+3(5.92e-05)]_35 chr19:39997730-39997810 9.33e-01 80 chr7:158799100-158799180 3.07e-01 80 chr1:26232089-26232169 1.19e-01 80 chr18:47901389-47901469 2.39e-02 59_[+2(4.80e-05)]_13 chr3:56717604-56717684 6.91e-02 80 chr1:153377278-153377358 1.42e-01 46_[+1(3.90e-05)]_26 chr5:179499418-179499498 8.91e-01 80 chr9:128508518-128508598 2.69e-01 30_[+1(9.59e-05)]_42 chr15:41055583-41055663 2.27e-02 80 chr11:74303594-74303674 1.30e-03 39_[+3(1.91e-05)]_33 chr4:174256014-174256094 6.23e-01 80 chr1:144886688-144886768 3.10e-02 80 chr17:8113878-8113958 9.72e-06 6_[+5(3.10e-05)]_32_[+2(3.59e-06)]_\ 26 chr11:9595083-9595163 5.84e-08 54_[+4(1.46e-05)]_[+2(3.59e-06)]_10 chr12:6960428-6960508 2.19e-03 17_[+2(9.56e-06)]_[+3(5.92e-05)]_47 chr16:85722529-85722609 3.20e-02 54_[+3(1.91e-05)]_18 chr5:149737609-149737689 7.16e-02 80 chr19:16222141-16222221 1.15e-03 12_[+3(1.91e-05)]_60 chr8:145743179-145743259 2.87e-01 80 chr14:105487735-10548781 4.01e-02 67_[+5(1.62e-05)]_5 chr17:29886242-29886322 7.91e-01 80 chr16:30006897-30006977 1.18e-03 60_[+4(2.92e-06)]_12 chr10:45496697-45496777 7.57e-01 80 chr1:28845289-28845369 6.59e-01 80 chr15:68346388-68346468 8.21e-01 80 chr16:29984724-29984804 9.77e-03 60_[+3(1.91e-05)]_12 chr19:49223978-49224058 3.07e-02 41_[+2(9.82e-05)]_31 chr20:5100023-5100103 1.82e-01 80 chr3:13461816-13461896 2.44e-01 62_[+1(7.78e-05)]_10 chr13:34117054-34117134 5.16e-02 80 chr12:98910343-98910423 1.30e-05 56_[+2(2.23e-06)]_16 chr1:51443202-51443282 1.92e-07 18_[+2(1.33e-06)]_11_[+5(1.80e-05)]_\ 7_[+4(7.34e-06)]_20 chr20:34359695-34359775 5.38e-02 70_[+3(1.91e-05)]_2 chr22:22378234-22378314 5.98e-02 80 chrX:47518798-47518878 3.92e-02 12_[+2(8.55e-05)]_60 chr2:48010276-48010356 6.92e-04 10_[+3(1.91e-05)]_26_[+4(3.53e-05)]_\ 28 chr19:46431113-46431193 2.85e-02 49_[+1(7.78e-05)]_23 chr19:14247531-14247611 8.25e-02 80 chr9:99181065-99181145 1.82e-03 68_[+2(4.80e-05)]_4 chr2:74757717-74757797 1.84e-02 80 chr8:71581578-71581658 5.36e-01 80 chr5:176739414-176739494 2.03e-06 26_[+1(3.90e-05)]_16_[+2(2.23e-06)]_\ 22 chr1:9555495-9555575 1.09e-01 3_[+1(7.78e-05)]_69 chr10:102820459-10282053 6.27e-05 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************