******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TEAD2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:152091477-152091557 1.0000 80 chr18:20284432-20284512 1.0000 80 chr7:22626559-22626639 1.0000 80 chr1:157550122-157550202 1.0000 80 chr17:30241827-30241907 1.0000 80 chr1:34100588-34100668 1.0000 80 chr1:42065732-42065812 1.0000 80 chr20:6362694-6362774 1.0000 80 chr7:72756691-72756771 1.0000 80 chr14:79314746-79314826 1.0000 80 chr5:96379925-96380005 1.0000 80 chr12:69809645-69809725 1.0000 80 chr14:79064536-79064616 1.0000 80 chr15:25747109-25747189 1.0000 80 chr20:30082079-30082159 1.0000 80 chr2:55001147-55001227 1.0000 80 chr1:51658011-51658091 1.0000 80 chr7:33756342-33756422 1.0000 80 chr13:40186344-40186424 1.0000 80 chr14:92970299-92970379 1.0000 80 chr10:131926219-13192629 1.0000 80 chr2:48698222-48698302 1.0000 80 chr6:160054386-160054466 1.0000 80 chr7:153129354-153129434 1.0000 80 chr22:39930912-39930992 1.0000 80 chr12:75728224-75728304 1.0000 80 chr16:15644804-15644884 1.0000 80 chr16:89772469-89772549 1.0000 80 chr11:68899167-68899247 1.0000 80 chr2:46503992-46504072 1.0000 80 chr10:80917450-80917530 1.0000 80 chr1:46347419-46347499 1.0000 80 chr1:62416256-62416336 1.0000 80 chr9:86198219-86198299 1.0000 80 chr5:176102799-176102879 1.0000 80 chr2:25014054-25014134 1.0000 80 chr18:42964543-42964623 1.0000 80 chr3:4985390-4985470 1.0000 80 chr10:75913048-75913128 1.0000 80 chr17:31264092-31264172 1.0000 80 chr3:124546408-124546488 1.0000 80 chr15:67066832-67066912 1.0000 80 chr1:205641360-205641440 1.0000 80 chr16:67138163-67138243 1.0000 80 chr1:201315879-201315959 1.0000 80 chr19:8412776-8412856 1.0000 80 chr9:112580315-112580395 1.0000 80 chr1:117636016-117636096 1.0000 80 chr10:43872930-43873010 1.0000 80 chr20:39707148-39707228 1.0000 80 chr12:56551677-56551757 1.0000 80 chr4:144777479-144777559 1.0000 80 chr2:147840595-147840675 1.0000 80 chr21:43378350-43378430 1.0000 80 chr6:32829072-32829152 1.0000 80 chr1:53647833-53647913 1.0000 80 chr3:107140186-107140266 1.0000 80 chr21:38311880-38311960 1.0000 80 chr1:10115903-10115983 1.0000 80 chr19:54770079-54770159 1.0000 80 chr19:58918499-58918579 1.0000 80 chr8:96249524-96249604 1.0000 80 chr1:43599956-43600036 1.0000 80 chr12:56216119-56216199 1.0000 80 chr10:113897298-11389737 1.0000 80 chr12:66539074-66539154 1.0000 80 chr1:93903673-93903753 1.0000 80 chr2:237471201-237471281 1.0000 80 chr12:66663718-66663798 1.0000 80 chr9:101553587-101553667 1.0000 80 chr1:117385400-117385480 1.0000 80 chr11:85753071-85753151 1.0000 80 chr1:29451103-29451183 1.0000 80 chr20:62066362-62066442 1.0000 80 chr8:26499371-26499451 1.0000 80 chr10:52334254-52334334 1.0000 80 chr11:100801029-10080110 1.0000 80 chr4:73161808-73161888 1.0000 80 chr3:123443243-123443323 1.0000 80 chr11:119350486-11935056 1.0000 80 chr22:43176148-43176228 1.0000 80 chr19:36001415-36001495 1.0000 80 chr8:95370056-95370136 1.0000 80 chr3:146356677-146356757 1.0000 80 chr17:26075248-26075328 1.0000 80 chr17:27206195-27206275 1.0000 80 chr4:170232963-170233043 1.0000 80 chr3:32939571-32939651 1.0000 80 chr5:157375971-157376051 1.0000 80 chr1:109224441-109224521 1.0000 80 chr2:173892334-173892414 1.0000 80 chr10:95048851-95048931 1.0000 80 chr3:39232824-39232904 1.0000 80 chr2:159359694-159359774 1.0000 80 chr19:42095033-42095113 1.0000 80 chr19:19296875-19296955 1.0000 80 chr14:50320657-50320737 1.0000 80 chr12:109825309-10982538 1.0000 80 chr5:31317923-31318003 1.0000 80 chr18:24229811-24229891 1.0000 80 chr22:30615179-30615259 1.0000 80 chr6:20400856-20400936 1.0000 80 chr11:7716085-7716165 1.0000 80 chr2:20490962-20491042 1.0000 80 chr12:27856755-27856835 1.0000 80 chr1:8065350-8065430 1.0000 80 chr14:36723574-36723654 1.0000 80 chr1:31846585-31846665 1.0000 80 chr12:34276121-34276201 1.0000 80 chr5:168301893-168301973 1.0000 80 chr5:38265813-38265893 1.0000 80 chr12:4386239-4386319 1.0000 80 chr17:43935502-43935582 1.0000 80 chrX:40883748-40883828 1.0000 80 chr1:75699146-75699226 1.0000 80 chr7:138759951-138760031 1.0000 80 chr2:131678129-131678209 1.0000 80 chr6:30910557-30910637 1.0000 80 chr1:165742713-165742793 1.0000 80 chr17:38324726-38324806 1.0000 80 chr6:91763005-91763085 1.0000 80 chr22:40349996-40350076 1.0000 80 chr1:31584224-31584304 1.0000 80 chr20:44658200-44658280 1.0000 80 chr17:49713828-49713908 1.0000 80 chr11:77491199-77491279 1.0000 80 chr5:5340575-5340655 1.0000 80 chr14:76027420-76027500 1.0000 80 chr19:21439692-21439772 1.0000 80 chr4:84674559-84674639 1.0000 80 chr7:50880666-50880746 1.0000 80 chr3:36974540-36974620 1.0000 80 chr14:65308030-65308110 1.0000 80 chr22:38379083-38379163 1.0000 80 chr1:118077765-118077845 1.0000 80 chr1:145030176-145030256 1.0000 80 chr2:27906530-27906610 1.0000 80 chr20:1456041-1456121 1.0000 80 chr10:9253334-9253414 1.0000 80 chr10:73722840-73722920 1.0000 80 chr20:34472354-34472434 1.0000 80 chr2:71147053-71147133 1.0000 80 chr9:6846036-6846116 1.0000 80 chr1:6266103-6266183 1.0000 80 chr8:125452732-125452812 1.0000 80 chr14:28141426-28141506 1.0000 80 chr4:160303680-160303760 1.0000 80 chr8:143735039-143735119 1.0000 80 chr17:27071449-27071529 1.0000 80 chr10:82423996-82424076 1.0000 80 chr2:134537848-134537928 1.0000 80 chr2:37012497-37012577 1.0000 80 chr1:51186327-51186407 1.0000 80 chr1:223897523-223897603 1.0000 80 chr7:72300699-72300779 1.0000 80 chr4:184020118-184020198 1.0000 80 chr1:186181840-186181920 1.0000 80 chr1:193080869-193080949 1.0000 80 chr9:102584048-102584128 1.0000 80 chr16:8223233-8223313 1.0000 80 chr22:22069270-22069350 1.0000 80 chr3:122799829-122799909 1.0000 80 chr5:72792922-72793002 1.0000 80 chr19:10138483-10138563 1.0000 80 chr3:67164390-67164470 1.0000 80 chr2:159314669-159314749 1.0000 80 chr13:20558981-20559061 1.0000 80 chr5:142093103-142093183 1.0000 80 chr15:49148190-49148270 1.0000 80 chr8:71227979-71228059 1.0000 80 chr15:91459574-91459654 1.0000 80 chr13:21635671-21635751 1.0000 80 chr2:216673838-216673918 1.0000 80 chr15:66220050-66220130 1.0000 80 chr17:33760731-33760811 1.0000 80 chr19:1265475-1265555 1.0000 80 chr11:75091848-75091928 1.0000 80 chr14:23039396-23039476 1.0000 80 chr4:87980012-87980092 1.0000 80 chr2:220354996-220355076 1.0000 80 chr3:138542747-138542827 1.0000 80 chr20:32497439-32497519 1.0000 80 chr19:8647251-8647331 1.0000 80 chr6:47015328-47015408 1.0000 80 chr3:193915316-193915396 1.0000 80 chr12:58240840-58240920 1.0000 80 chr1:152505947-152506027 1.0000 80 chr2:98853547-98853627 1.0000 80 chr3:149111295-149111375 1.0000 80 chr3:47462644-47462724 1.0000 80 chr7:66459841-66459921 1.0000 80 chr4:140149021-140149101 1.0000 80 chr17:43909653-43909733 1.0000 80 chr15:28472664-28472744 1.0000 80 chr14:44631510-44631590 1.0000 80 chr20:42305839-42305919 1.0000 80 chr2:26567594-26567674 1.0000 80 chr6:130069537-130069617 1.0000 80 chr7:73694104-73694184 1.0000 80 chr10:333927-334007 1.0000 80 chr12:9950731-9950811 1.0000 80 chr7:105817337-105817417 1.0000 80 chr7:151384859-151384939 1.0000 80 chr10:123811303-12381138 1.0000 80 chr1:38385114-38385194 1.0000 80 chr6:157939853-157939933 1.0000 80 chr6:30500383-30500463 1.0000 80 chr7:156178911-156178991 1.0000 80 chr18:3650049-3650129 1.0000 80 chr3:42078034-42078114 1.0000 80 chr1:11654403-11654483 1.0000 80 chr14:21081684-21081764 1.0000 80 chr10:92681033-92681113 1.0000 80 chr17:55320562-55320642 1.0000 80 chr16:3081763-3081843 1.0000 80 chr1:173572557-173572637 1.0000 80 chr1:24045066-24045146 1.0000 80 chrX:153599829-153599909 1.0000 80 chrX:133671494-133671574 1.0000 80 chr16:56998915-56998995 1.0000 80 chr1:201975256-201975336 1.0000 80 chr7:93251857-93251937 1.0000 80 chr17:8057662-8057742 1.0000 80 chr9:87548003-87548083 1.0000 80 chr1:153669820-153669900 1.0000 80 chr6:781359-781439 1.0000 80 chr11:58537721-58537801 1.0000 80 chr7:39504711-39504791 1.0000 80 chr11:109817080-10981716 1.0000 80 chr3:42696353-42696433 1.0000 80 chr12:123344941-12334502 1.0000 80 chr17:29285299-29285379 1.0000 80 chr18:20143234-20143314 1.0000 80 chr3:46977186-46977266 1.0000 80 chr17:42664851-42664931 1.0000 80 chr12:52288870-52288950 1.0000 80 chr16:85049553-85049633 1.0000 80 chr18:12934619-12934699 1.0000 80 chr12:96883259-96883339 1.0000 80 chr3:150089762-150089842 1.0000 80 chr12:118472782-11847286 1.0000 80 chr1:101251446-101251526 1.0000 80 chr14:77509867-77509947 1.0000 80 chr6:161827806-161827886 1.0000 80 chr15:42272225-42272305 1.0000 80 chr6:11263807-11263887 1.0000 80 chr1:173391818-173391898 1.0000 80 chr1:9360272-9360352 1.0000 80 chr9:102796283-102796363 1.0000 80 chr1:16375359-16375439 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TEAD2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TEAD2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.253 G 0.258 T 0.238 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.253 G 0.258 T 0.238 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCATTCCW MEME-1 width = 8 sites = 99 llr = 821 E-value = 8.0e-081 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCATTCCW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 52a::::4 pos.-specific C :8:::9a1 probability G 5::::::: matrix T :::aa1:5 bits 2.1 *** 1.9 *** * 1.7 *** * 1.4 ***** Relative 1.2 ****** Entropy 1.0 ****** (12.0 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACATTCCT consensus GA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATTCCW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:9360272-9360352 62 1.36e-05 tggaggcaac acattcct catttgggtg chr6:11263807-11263887 56 1.36e-05 TTCCCAATTC ACATTCCT GGCCTTTGAC chr11:58537721-58537801 46 1.36e-05 ccccaactcc acattcct caaagtttat chr1:173572557-173572637 37 1.36e-05 tgctagtttc acattcct tgaggctcag chr19:1265475-1265555 72 1.36e-05 CCCAGCCTCC ACATTCCT G chr8:71227979-71228059 36 1.36e-05 TAGCAAACCC ACATTCCT GCCACAAGCC chr8:125452732-125452812 28 1.36e-05 CAAATACCGG ACATTCCT CACCACCCTC chr3:36974540-36974620 49 1.36e-05 gtactagctc acattcct ttccttattt chr17:49713828-49713908 26 1.36e-05 gcgaggaagc acattcct tccaCAGGAT chr6:20400856-20400936 29 1.36e-05 AACTTCCCCC ACATTCCT GCAGGGGTCT chr1:109224441-109224521 22 1.36e-05 gtaccagctc acattcct ttccttattt chr20:62066362-62066442 31 1.36e-05 ctgcatcgct acattcct accagcaggg chr2:237471201-237471281 40 1.36e-05 atgccaattc acattcct accTCCAGGG chr1:46347419-46347499 71 1.36e-05 ATTCTATGAG ACATTCCT TT chr11:68899167-68899247 27 1.36e-05 TGCCTCAGCC ACATTCCT GCCTCTAGGT chr7:152091477-152091557 36 1.36e-05 catgctaagc acattcct gcctctgggg chr11:109817080-10981716 73 2.77e-05 CCAGGCTTCC GCATTCCT chr12:9950731-9950811 23 2.77e-05 CTGTTCTTCT GCATTCCT GCAAGGGCTC chr3:193915316-193915396 57 2.77e-05 CCTTATTCCA GCATTCCT ACCACTAGTC chr19:10138483-10138563 25 2.77e-05 TCGAGCACTG GCATTCCT GAGGGAGGGG chr8:143735039-143735119 30 2.77e-05 ccacactttt gcattcct gacaccagat chr2:131678129-131678209 70 2.77e-05 CATCTTGTGG GCATTCCT GGG chr11:85753071-85753151 33 2.77e-05 GGTAAACTCT GCATTCCT ACCACTAGAT chr12:66539074-66539154 30 2.77e-05 AAGAGTCTAT GCATTCCT ACCAGGTGAG chr7:22626559-22626639 51 2.77e-05 CTTTCAGACT GCATTCCT CCCACTAGAG chr9:87548003-87548083 27 4.21e-05 agttggccac acattcca agctctagag chr1:24045066-24045146 55 4.21e-05 ggaagacaag acattcca ggcagcagga chr6:30500383-30500463 20 4.21e-05 gggactacaa acattcca ttcatggcaA chr1:38385114-38385194 45 4.21e-05 CACCAGGGGG ACATTCCA AGGGCTCTCT chr12:58240840-58240920 41 4.21e-05 GGACCTAACA ACATTCCA GGCGCCACGG chr20:1456041-1456121 15 4.21e-05 ccatgtgacc acattcca gccaagtaga chr7:50880666-50880746 48 4.21e-05 GGCCCTGCCC ACATTCCA GGAAACTCCC chr14:76027420-76027500 12 4.21e-05 GGAACTCCCC ACATTCCA GGATTACAGC chr22:40349996-40350076 11 4.21e-05 TTCACAGTCT ACATTCCA GCCACCTGGA chr17:43935502-43935582 45 4.21e-05 GAGACAGTCC ACATTCCA GGGCCCCTGT chr5:38265813-38265893 38 4.21e-05 CAGAGGGCGC ACATTCCA GAGCTGGCTC chr12:66663718-66663798 60 4.21e-05 CACTTTCTCT ACATTCCA GGAAGAAATA chr7:33756342-33756422 46 4.21e-05 CATTCTTATG ACATTCCA GCCAGTAGAG chr20:30082079-30082159 19 4.21e-05 catcatattc acattcca gccagcagga chr1:16375359-16375439 54 5.69e-05 GCGCACACCC GCATTCCA GGCTGGACGG chr16:56998915-56998995 51 5.69e-05 ttgcatcact gcattcca gcctgggtga chr7:156178911-156178991 55 5.69e-05 agttccacac gCATTCCA GGGACCGCAT chr2:26567594-26567674 68 5.69e-05 tcacgtcact gcattcca gcctg chr2:98853547-98853627 55 5.69e-05 ttgcgtcacc gcattcca gcctgggtga chr19:8647251-8647331 64 5.69e-05 ttgcatcact gcattcca gcctgggcg chr13:21635671-21635751 39 5.69e-05 TACATTGTTG GCATTCCA CGGGCGTCAC chr5:142093103-142093183 63 5.69e-05 TTGTCAAAAC GCATTCCA GCGCCCAGTG chr9:102584048-102584128 45 5.69e-05 TTGACGTCTC GCATTCCA GGCACTCTAT chr4:160303680-160303760 37 5.69e-05 ttgcgccact gcattcca gcctggacga chr20:34472354-34472434 58 5.69e-05 GCAGAGATCT GCATTCCA GGGGCTAGCC chr11:77491199-77491279 16 5.69e-05 cacataccat gcattcca taaagacttg chr1:31584224-31584304 56 5.69e-05 ttgcgcaact gcattcca gcctgggcgg chr3:123443243-123443323 42 5.69e-05 CGCCCATATT GCATTCCA GCCACAAGGA chr1:10115903-10115983 37 5.69e-05 ttgcatcact gcattcca gcctggatga chr2:55001147-55001227 2 5.69e-05 t gcattcca gccagcagga chr14:77509867-77509947 33 7.03e-05 GAGTTTCACC AAATTCCT GGATGTTGTG chr3:42696353-42696433 29 7.03e-05 GGAGGGGGTT AAATTCCT GTGGTGGGGG chr7:73694104-73694184 40 7.03e-05 AGTCCCGTGG AAATTCCT GGtgcatgag chr4:144777479-144777559 25 7.03e-05 CCTGCACTAG AAATTCCT CCCACATGAG chr3:42078034-42078114 55 8.42e-05 CAGTGTAACA GAATTCCT GGGTCATGAG chr15:91459574-91459654 34 8.42e-05 GAGTAGGGCT GAATTCCT GGGGTGGGGG chr6:30910557-30910637 57 8.42e-05 GCGGAGATCT GAATTCCT GAGATTCCGA chr14:50320657-50320737 35 8.42e-05 GTAGCAACCA GAATTCCT ACCACCAGAA chr8:95370056-95370136 38 8.42e-05 GACATGCCTG GAATTCCT GATGTGATGG chr12:69809645-69809725 63 8.42e-05 TCACTCTGAA GAATTCCT GTGAAGATTA chr16:85049553-85049633 65 9.84e-05 agctgtgcct aaattcca acaggagg chr22:38379083-38379163 27 9.84e-05 GCCACCCGCA AAATTCCA ACCACGAGGG chr3:150089762-150089842 66 1.13e-04 TAGGTGACAG GAATTCCA CGGACAC chr2:159359694-159359774 65 1.13e-04 ATGTCAAAAG GAATTCCA GTAATGCG chr7:72756691-72756771 44 1.13e-04 TGTGAGTGGA GAATTCCA GCCACCAGAT chr5:72792922-72793002 35 1.26e-04 ACAAAGATAC ACATTTCT TCCAAAAGGG chr1:117385400-117385480 4 1.26e-04 taa acatttct cctatcaaca chr6:161827806-161827886 59 1.39e-04 AAATCTGTAA GCATTTCT CAGGCAATGA chr12:34276121-34276201 46 1.39e-04 ttccttagag gcatttct ccctcatggg chr12:109825309-10982538 7 1.39e-04 ctttag gcatttct ccttaaagtg chr22:39930912-39930992 36 1.39e-04 GGGGCCGGGC GCATTTCT GCCAATAGGT chr6:91763005-91763085 7 1.67e-04 agtttt acattccc accagcagta chr2:20490962-20491042 37 1.67e-04 CTTGTGGAAG ACATTTCA AAAGAATGAA chr17:26075248-26075328 43 1.67e-04 AGGAAGATGC ACATTCCC TCCAGCAGGG chr11:119350486-11935056 45 1.67e-04 gtatcatttt acattccc accagcaggg chr5:176102799-176102879 35 1.67e-04 cagccacttc acattccc accagcaggg chr6:157939853-157939933 6 1.96e-04 CCAGC GCATTCCC AGCGCATTCT chr3:4985390-4985470 39 1.96e-04 ctgttctttt gcattccc accagcaggt chrX:133671494-133671574 28 2.10e-04 GACACCACAT CCATTCCT CCAGTGCTTA chr10:92681033-92681113 25 2.10e-04 TGTGAGAGGG CCATTCCT TTGGTGGTGA chr9:86198219-86198299 27 2.10e-04 CAGACATGTC CCATTCCT GCCAGCAGAG chr1:201975256-201975336 37 2.22e-04 AGTGACTATT AAATTTCT TCCACCAGAG chr9:112580315-112580395 40 2.36e-04 CTAGTGGAGG GAATTTCT TAGCATGTGT chr20:6362694-6362774 53 2.36e-04 CTAGTGGTAG GAATTTCT GGCACTATGG chr20:32497439-32497519 72 2.91e-04 acaatttcaa aaatttca g chr2:216673838-216673918 62 2.91e-04 tgggaatgca aaatttca cctctcttcc chr16:89772469-89772549 28 2.91e-04 ctgctattat tcattcct gtcttatggg chr12:75728224-75728304 37 2.91e-04 TGGATGGTTG AAATTCCC TCCACCAGAG chr1:152505947-152506027 69 3.19e-04 ACACCTCGGG GAATTTCA AGGA chr15:49148190-49148270 67 3.19e-04 TGCTTCCCTG GAATTTCA TTGTAA chr6:47015328-47015408 67 3.32e-04 TGAGATTAGG ACATTCTT TTTCAC chr1:93903673-93903753 29 3.32e-04 ATATAGTTCA ACATTCTT GCCATTAGAT chr2:220354996-220355076 30 3.59e-04 tggaaccact gcattctt gcccctAGGG chr16:8223233-8223313 28 3.59e-04 TGTGCGGTAC TCATTCCA GCCAGTGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATTCCW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:9360272-9360352 1.4e-05 61_[+1]_11 chr6:11263807-11263887 1.4e-05 55_[+1]_17 chr11:58537721-58537801 1.4e-05 45_[+1]_27 chr1:173572557-173572637 1.4e-05 36_[+1]_36 chr19:1265475-1265555 1.4e-05 71_[+1]_1 chr8:71227979-71228059 1.4e-05 35_[+1]_37 chr8:125452732-125452812 1.4e-05 27_[+1]_45 chr3:36974540-36974620 1.4e-05 48_[+1]_24 chr17:49713828-49713908 1.4e-05 25_[+1]_47 chr6:20400856-20400936 1.4e-05 28_[+1]_44 chr1:109224441-109224521 1.4e-05 21_[+1]_51 chr20:62066362-62066442 1.4e-05 30_[+1]_42 chr2:237471201-237471281 1.4e-05 39_[+1]_33 chr1:46347419-46347499 1.4e-05 70_[+1]_2 chr11:68899167-68899247 1.4e-05 26_[+1]_46 chr7:152091477-152091557 1.4e-05 35_[+1]_37 chr11:109817080-10981716 2.8e-05 72_[+1] chr12:9950731-9950811 2.8e-05 22_[+1]_50 chr3:193915316-193915396 2.8e-05 56_[+1]_16 chr19:10138483-10138563 2.8e-05 24_[+1]_48 chr8:143735039-143735119 2.8e-05 29_[+1]_43 chr2:131678129-131678209 2.8e-05 69_[+1]_3 chr11:85753071-85753151 2.8e-05 32_[+1]_40 chr12:66539074-66539154 2.8e-05 29_[+1]_43 chr7:22626559-22626639 2.8e-05 50_[+1]_22 chr9:87548003-87548083 4.2e-05 26_[+1]_46 chr1:24045066-24045146 4.2e-05 54_[+1]_18 chr6:30500383-30500463 4.2e-05 19_[+1]_53 chr1:38385114-38385194 4.2e-05 44_[+1]_28 chr12:58240840-58240920 4.2e-05 40_[+1]_32 chr20:1456041-1456121 4.2e-05 14_[+1]_58 chr7:50880666-50880746 4.2e-05 47_[+1]_25 chr14:76027420-76027500 4.2e-05 11_[+1]_61 chr22:40349996-40350076 4.2e-05 10_[+1]_62 chr17:43935502-43935582 4.2e-05 44_[+1]_28 chr5:38265813-38265893 4.2e-05 37_[+1]_35 chr12:66663718-66663798 4.2e-05 59_[+1]_13 chr7:33756342-33756422 4.2e-05 45_[+1]_27 chr20:30082079-30082159 4.2e-05 18_[+1]_54 chr1:16375359-16375439 5.7e-05 53_[+1]_19 chr16:56998915-56998995 5.7e-05 50_[+1]_22 chr7:156178911-156178991 5.7e-05 54_[+1]_18 chr2:26567594-26567674 5.7e-05 67_[+1]_5 chr2:98853547-98853627 5.7e-05 54_[+1]_18 chr19:8647251-8647331 5.7e-05 63_[+1]_9 chr13:21635671-21635751 5.7e-05 38_[+1]_34 chr5:142093103-142093183 5.7e-05 62_[+1]_10 chr9:102584048-102584128 5.7e-05 44_[+1]_28 chr4:160303680-160303760 5.7e-05 36_[+1]_36 chr20:34472354-34472434 5.7e-05 57_[+1]_15 chr11:77491199-77491279 5.7e-05 15_[+1]_57 chr1:31584224-31584304 5.7e-05 55_[+1]_17 chr3:123443243-123443323 5.7e-05 41_[+1]_31 chr1:10115903-10115983 5.7e-05 36_[+1]_36 chr2:55001147-55001227 5.7e-05 1_[+1]_71 chr14:77509867-77509947 7e-05 32_[+1]_40 chr3:42696353-42696433 7e-05 28_[+1]_44 chr7:73694104-73694184 7e-05 39_[+1]_33 chr4:144777479-144777559 7e-05 24_[+1]_48 chr3:42078034-42078114 8.4e-05 54_[+1]_18 chr15:91459574-91459654 8.4e-05 33_[+1]_39 chr6:30910557-30910637 8.4e-05 56_[+1]_16 chr14:50320657-50320737 8.4e-05 34_[+1]_38 chr8:95370056-95370136 8.4e-05 37_[+1]_35 chr12:69809645-69809725 8.4e-05 62_[+1]_10 chr16:85049553-85049633 9.8e-05 64_[+1]_8 chr22:38379083-38379163 9.8e-05 26_[+1]_46 chr3:150089762-150089842 0.00011 65_[+1]_7 chr2:159359694-159359774 0.00011 64_[+1]_8 chr7:72756691-72756771 0.00011 43_[+1]_29 chr5:72792922-72793002 0.00013 34_[+1]_38 chr1:117385400-117385480 0.00013 3_[+1]_69 chr6:161827806-161827886 0.00014 58_[+1]_14 chr12:34276121-34276201 0.00014 45_[+1]_27 chr12:109825309-10982538 0.00014 6_[+1]_66 chr22:39930912-39930992 0.00014 35_[+1]_37 chr6:91763005-91763085 0.00017 6_[+1]_66 chr2:20490962-20491042 0.00017 36_[+1]_36 chr17:26075248-26075328 0.00017 42_[+1]_30 chr11:119350486-11935056 0.00017 44_[+1]_28 chr5:176102799-176102879 0.00017 34_[+1]_38 chr6:157939853-157939933 0.0002 5_[+1]_67 chr3:4985390-4985470 0.0002 38_[+1]_34 chrX:133671494-133671574 0.00021 27_[+1]_45 chr10:92681033-92681113 0.00021 24_[+1]_48 chr9:86198219-86198299 0.00021 26_[+1]_46 chr1:201975256-201975336 0.00022 36_[+1]_36 chr9:112580315-112580395 0.00024 39_[+1]_33 chr20:6362694-6362774 0.00024 52_[+1]_20 chr20:32497439-32497519 0.00029 71_[+1]_1 chr2:216673838-216673918 0.00029 61_[+1]_11 chr16:89772469-89772549 0.00029 27_[+1]_45 chr12:75728224-75728304 0.00029 36_[+1]_36 chr1:152505947-152506027 0.00032 68_[+1]_4 chr15:49148190-49148270 0.00032 66_[+1]_6 chr6:47015328-47015408 0.00033 66_[+1]_6 chr1:93903673-93903753 0.00033 28_[+1]_44 chr2:220354996-220355076 0.00036 29_[+1]_43 chr16:8223233-8223313 0.00036 27_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATTCCW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCATTCCW width=8 seqs=99 chr1:9360272-9360352 ( 62) ACATTCCT 1 chr6:11263807-11263887 ( 56) ACATTCCT 1 chr11:58537721-58537801 ( 46) ACATTCCT 1 chr1:173572557-173572637 ( 37) ACATTCCT 1 chr19:1265475-1265555 ( 72) ACATTCCT 1 chr8:71227979-71228059 ( 36) ACATTCCT 1 chr8:125452732-125452812 ( 28) ACATTCCT 1 chr3:36974540-36974620 ( 49) ACATTCCT 1 chr17:49713828-49713908 ( 26) ACATTCCT 1 chr6:20400856-20400936 ( 29) ACATTCCT 1 chr1:109224441-109224521 ( 22) ACATTCCT 1 chr20:62066362-62066442 ( 31) ACATTCCT 1 chr2:237471201-237471281 ( 40) ACATTCCT 1 chr1:46347419-46347499 ( 71) ACATTCCT 1 chr11:68899167-68899247 ( 27) ACATTCCT 1 chr7:152091477-152091557 ( 36) ACATTCCT 1 chr11:109817080-10981716 ( 73) GCATTCCT 1 chr12:9950731-9950811 ( 23) GCATTCCT 1 chr3:193915316-193915396 ( 57) GCATTCCT 1 chr19:10138483-10138563 ( 25) GCATTCCT 1 chr8:143735039-143735119 ( 30) GCATTCCT 1 chr2:131678129-131678209 ( 70) GCATTCCT 1 chr11:85753071-85753151 ( 33) GCATTCCT 1 chr12:66539074-66539154 ( 30) GCATTCCT 1 chr7:22626559-22626639 ( 51) GCATTCCT 1 chr9:87548003-87548083 ( 27) ACATTCCA 1 chr1:24045066-24045146 ( 55) ACATTCCA 1 chr6:30500383-30500463 ( 20) ACATTCCA 1 chr1:38385114-38385194 ( 45) ACATTCCA 1 chr12:58240840-58240920 ( 41) ACATTCCA 1 chr20:1456041-1456121 ( 15) ACATTCCA 1 chr7:50880666-50880746 ( 48) ACATTCCA 1 chr14:76027420-76027500 ( 12) ACATTCCA 1 chr22:40349996-40350076 ( 11) ACATTCCA 1 chr17:43935502-43935582 ( 45) ACATTCCA 1 chr5:38265813-38265893 ( 38) ACATTCCA 1 chr12:66663718-66663798 ( 60) ACATTCCA 1 chr7:33756342-33756422 ( 46) ACATTCCA 1 chr20:30082079-30082159 ( 19) ACATTCCA 1 chr1:16375359-16375439 ( 54) GCATTCCA 1 chr16:56998915-56998995 ( 51) GCATTCCA 1 chr7:156178911-156178991 ( 55) GCATTCCA 1 chr2:26567594-26567674 ( 68) GCATTCCA 1 chr2:98853547-98853627 ( 55) GCATTCCA 1 chr19:8647251-8647331 ( 64) GCATTCCA 1 chr13:21635671-21635751 ( 39) GCATTCCA 1 chr5:142093103-142093183 ( 63) GCATTCCA 1 chr9:102584048-102584128 ( 45) GCATTCCA 1 chr4:160303680-160303760 ( 37) GCATTCCA 1 chr20:34472354-34472434 ( 58) GCATTCCA 1 chr11:77491199-77491279 ( 16) GCATTCCA 1 chr1:31584224-31584304 ( 56) GCATTCCA 1 chr3:123443243-123443323 ( 42) GCATTCCA 1 chr1:10115903-10115983 ( 37) GCATTCCA 1 chr2:55001147-55001227 ( 2) GCATTCCA 1 chr14:77509867-77509947 ( 33) AAATTCCT 1 chr3:42696353-42696433 ( 29) AAATTCCT 1 chr7:73694104-73694184 ( 40) AAATTCCT 1 chr4:144777479-144777559 ( 25) AAATTCCT 1 chr3:42078034-42078114 ( 55) GAATTCCT 1 chr15:91459574-91459654 ( 34) GAATTCCT 1 chr6:30910557-30910637 ( 57) GAATTCCT 1 chr14:50320657-50320737 ( 35) GAATTCCT 1 chr8:95370056-95370136 ( 38) GAATTCCT 1 chr12:69809645-69809725 ( 63) GAATTCCT 1 chr16:85049553-85049633 ( 65) AAATTCCA 1 chr22:38379083-38379163 ( 27) AAATTCCA 1 chr3:150089762-150089842 ( 66) GAATTCCA 1 chr2:159359694-159359774 ( 65) GAATTCCA 1 chr7:72756691-72756771 ( 44) GAATTCCA 1 chr5:72792922-72793002 ( 35) ACATTTCT 1 chr1:117385400-117385480 ( 4) ACATTTCT 1 chr6:161827806-161827886 ( 59) GCATTTCT 1 chr12:34276121-34276201 ( 46) GCATTTCT 1 chr12:109825309-10982538 ( 7) GCATTTCT 1 chr22:39930912-39930992 ( 36) GCATTTCT 1 chr6:91763005-91763085 ( 7) ACATTCCC 1 chr2:20490962-20491042 ( 37) ACATTTCA 1 chr17:26075248-26075328 ( 43) ACATTCCC 1 chr11:119350486-11935056 ( 45) ACATTCCC 1 chr5:176102799-176102879 ( 35) ACATTCCC 1 chr6:157939853-157939933 ( 6) GCATTCCC 1 chr3:4985390-4985470 ( 39) GCATTCCC 1 chrX:133671494-133671574 ( 28) CCATTCCT 1 chr10:92681033-92681113 ( 25) CCATTCCT 1 chr9:86198219-86198299 ( 27) CCATTCCT 1 chr1:201975256-201975336 ( 37) AAATTTCT 1 chr9:112580315-112580395 ( 40) GAATTTCT 1 chr20:6362694-6362774 ( 53) GAATTTCT 1 chr20:32497439-32497519 ( 72) AAATTTCA 1 chr2:216673838-216673918 ( 62) AAATTTCA 1 chr16:89772469-89772549 ( 28) TCATTCCT 1 chr12:75728224-75728304 ( 37) AAATTCCC 1 chr1:152505947-152506027 ( 69) GAATTTCA 1 chr15:49148190-49148270 ( 67) GAATTTCA 1 chr6:47015328-47015408 ( 67) ACATTCTT 1 chr1:93903673-93903753 ( 29) ACATTCTT 1 chr2:220354996-220355076 ( 30) GCATTCTT 1 chr16:8223233-8223313 ( 28) TCATTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATTCCW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.12623 E= 8.0e-081 98 -306 82 -356 -11 160 -1327 -1327 200 -1327 -1327 -1327 -1327 -1327 -1327 207 -1327 -1327 -1327 207 -1327 176 -1327 -75 -1327 194 -1327 -297 73 -184 -1327 111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATTCCW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 8.0e-081 0.494949 0.030303 0.454545 0.020202 0.232323 0.767677 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.858586 0.000000 0.141414 0.000000 0.969697 0.000000 0.030303 0.414141 0.070707 0.000000 0.515152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATTCCW MEME-1 regular expression -------------------------------------------------------------------------------- [AG][CA]ATTCC[TA] -------------------------------------------------------------------------------- Time 5.09 secs. ******************************************************************************** ******************************************************************************** MOTIF WGGAATGY MEME-2 width = 8 sites = 98 llr = 800 E-value = 1.0e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGGAATGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 51:aa::: pos.-specific C 1:::::15 probability G 19a:::8: matrix T 3::::a15 bits 2.1 *** 1.9 **** 1.7 **** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ****** (11.8 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAATGT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAATGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:11654403-11654483 17 1.52e-05 CCCTCTAGGC AGGAATGT CGTGAAGCTA chr14:65308030-65308110 42 1.52e-05 CTCTGCAGGA AGGAATGT GGAGATCAAA chr14:36723574-36723654 51 1.52e-05 cccatctgga aggaatgt taatgtcagt chr19:42095033-42095113 42 1.52e-05 ACAGTGTCTC AGGAATGT TCATTCTGAG chr9:101553587-101553667 46 1.52e-05 ACCTGCTGGC AGGAATGT TTGTTGCAGG chr6:32829072-32829152 34 1.52e-05 ccctgcgggc aggaatgt gtaggggaat chr19:8412776-8412856 28 1.52e-05 ggcggaggcc aggaatgt agctaaccac chr15:67066832-67066912 38 1.52e-05 CTCTGGTGGC AGGAATGT GGGTGCCACC chr3:124546408-124546488 65 1.52e-05 ccctgctggt aggaatgt aaaatgat chr14:92970299-92970379 22 1.52e-05 ATCATCACAC AGGAATGT CCCTTCTCCC chr1:42065732-42065812 56 1.52e-05 ctctgctggt aggaatgt aaaacggtgc chr1:101251446-101251526 33 3.14e-05 cttatcagga aggaatgc tagtcagttg chr18:12934619-12934699 61 3.14e-05 CCTGTCTCAC AGGAATGC TACACATGCA chr3:46977186-46977266 38 3.14e-05 ATCTAGGGGT AGGAATGC ATCCTTTCTT chr1:153669820-153669900 55 3.14e-05 gcaggcaggc aggAATGC GGGGGAGAGG chr4:140149021-140149101 45 3.14e-05 AAGCTAGCAC AGGAATGC GGAAGTAGTG chr4:87980012-87980092 45 3.14e-05 gatgaattcg aggaatgc tctttaaggc chr2:159314669-159314749 42 3.14e-05 CAGGAATGCG AGGAATGC ACCAGGGGCA chr4:184020118-184020198 69 3.14e-05 GGTTAAGCTC AGGAATGC GGCG chr10:73722840-73722920 32 3.14e-05 ataagggtcc aggaatgc agcttcggag chr19:21439692-21439772 60 3.14e-05 cccatgaggg aggaatgc ttccaaggaa chr12:27856755-27856835 41 3.14e-05 CCCTGTCTGC AGGAATGC TGTGTGGAGT chr22:43176148-43176228 50 3.14e-05 CCCTGCTGAT AGGAATGC AAATTGTCCT chr1:29451103-29451183 51 3.14e-05 CCCTGGAGGC AGGAATGC AGAGCGGGGG chr12:66663718-66663798 19 3.14e-05 ACAAAGCTGG AGGAATGC TTCATTAGAA chr1:43599956-43600036 43 3.14e-05 cacccacccc aggaatgc atgtttgact chr20:39707148-39707228 48 3.14e-05 TAATTGTTCT AGGAATGC AGAATAATAC chr1:205641360-205641440 40 3.14e-05 TAGCAGCAAG AGGAATGC CAAGAATGCA chr10:80917450-80917530 32 3.14e-05 CAGGTATTTC AGGAATGC AGGAGGCGGG chr2:48698222-48698302 54 3.14e-05 CTCTTGAGGA AGGAATGC TTCATTTATT chr15:42272225-42272305 34 4.58e-05 ccctgctgcc tggaatgt ggacatgatg chrX:133671494-133671574 63 4.58e-05 ACCCCCTGCC TGGAATGT CCACCCCTGT chr17:55320562-55320642 22 4.58e-05 CCCTGAACTC TGGAATGT GGGGCTGTGA chr7:151384859-151384939 18 4.58e-05 CTCATCCCTG TGGAATGT TGGGGAGAAG chr10:333927-334007 40 4.58e-05 tcctgctggc tggaatgt ggaaatgatg chr20:42305839-42305919 67 4.58e-05 TGCAGGTCCC TGGAATGT GCTGTG chr15:66220050-66220130 46 4.58e-05 ccctggtggc tggaatgt agtgagccac chr22:22069270-22069350 25 4.58e-05 TAAGCATTAC TGGAATGT GGACATGACT chr1:186181840-186181920 44 4.58e-05 CAAACATCTG TGGAATGT CTGTCTGGCC chr2:71147053-71147133 29 4.58e-05 TTGTTACGGC TGGAATGT CAACAGCCAC chr4:84674559-84674639 50 4.58e-05 tcctcctggc tggaatgt gagcatgaAG chr2:131678129-131678209 24 4.58e-05 TGGATGGTGC TGGAATGT GAAACTCCCC chr19:54770079-54770159 35 4.58e-05 CCCTCGTGGG TGGAATGT GTTCCATGGC chr21:43378350-43378430 47 4.58e-05 ACCTGGAGGC TGGAATGT GCTTCGAGTC chr15:25747109-25747189 37 4.58e-05 ATCTGTTGGA TGGAATGT GAGTCCTGCT chrX:153599829-153599909 23 6.12e-05 CCCCGCCCGT TGGAATGC CCCCACTAGG chr18:3650049-3650129 42 6.12e-05 tcacccaggc tggaatgc agttgcacaa chr7:105817337-105817417 28 6.12e-05 TGACCCGGGC TGGAATGC CGGCTCCAGG chr1:193080869-193080949 27 6.12e-05 tcacccaggc tggaatgc gatgatgcaa chr20:44658200-44658280 18 6.12e-05 TCCAAGGTGC TGGAATGC GCCGCGCCCG chr1:165742713-165742793 26 6.12e-05 tcacccaggc tggaatgc agtgactcga chr10:43872930-43873010 50 6.12e-05 GCAGCACGAC TGGAATGC AGGCGATAGG chr17:30241827-30241907 42 6.12e-05 atctacaggt tggaatgc agtggcacag chr15:28472664-28472744 30 7.69e-05 cactggtggt gggaatgt aaaaatgata chr17:33760731-33760811 57 7.69e-05 CTCATCACAG GGGAATGT GCAAGTCTGA chr10:52334254-52334334 49 7.69e-05 cactactggt gggaatgt aaattgcaac chr19:58918499-58918579 66 7.69e-05 ACCTGCTGGT GGGAATGT AGAAGCC chr12:123344941-12334502 45 1.23e-04 GCCACGCAGC AGGAATTT TACGCCAAGA chr17:8057662-8057742 28 1.23e-04 GAAGCTGCCT CGGAATGT GGGGCAGGGA chr6:30500383-30500463 40 1.23e-04 catggcaAct aggaattt atagaaacac chr10:123811303-12381138 37 1.23e-04 CCCTGGTGGC AGGAATTT TCATGCCTGG chr2:216673838-216673918 53 1.23e-04 ctctgctggt gggaatgc aaaatttcac chr17:38324726-38324806 24 1.23e-04 AGAATGCTAA AGGAATTT GAGAGAACAT chr1:31846585-31846665 53 1.23e-04 CCCCTCCCTG CGGAATGT CTCCTGCTGG chr22:30615179-30615259 26 1.23e-04 cactgctggt gggaatgc ggaatggcac chr3:39232824-39232904 40 1.23e-04 CCCCGCCCCC AGGAATTT CCAGAATCTC chr1:117636016-117636096 66 1.23e-04 TCTGCTGGCT CGGAATGT GCTTCAT chr1:34100588-34100668 46 1.23e-04 CTCTTGTGTC CGGAATGT ATTCTGCAGC chr12:96883259-96883339 40 1.54e-04 CTGTGTTTCT CGGAATGC GCGCGGGATG chr7:66459841-66459921 13 1.54e-04 GCTGCTGCCA CGGAATGC CAGTCCCTAG chr3:138542747-138542827 15 1.54e-04 TCAGCAGGTA AGGAATTC ATGGAATTCA chr6:161827806-161827886 39 1.82e-04 TACCACAATC TGGAATTT GCAAATCTGT chr10:9253334-9253414 65 1.82e-04 AACTATAGGT TGGAATTT TGCAGTGC chr3:146356677-146356757 41 1.82e-04 TAGTGGGAAG AAGAATGT GCTATGAGGA chr11:100801029-10080110 6 1.82e-04 CATCT TGGAATTT TGTAGAGGAT chr1:53647833-53647913 44 1.82e-04 ACCGTGTGGC AAGAATGT AAACGCTATT chr1:62416256-62416336 50 1.82e-04 AAAGAATGTT AAGAATGT TCACGTCAAA chr14:21081684-21081764 41 2.27e-04 TTCTATCGGC AAGAATGC GTACTTATTT chr1:51186327-51186407 35 2.27e-04 cccccaccct aggaatct tatcaaccag chr9:6846036-6846116 53 2.27e-04 CTCTGGTGGG AAGAATGC AGCAGCTTCA chr5:5340575-5340655 45 2.27e-04 CTCGTGTGTG TGGAATTC TCTGTGCATT chr3:107140186-107140266 66 2.27e-04 GAAGAAATGT AGGAATCT GCAATTG chr10:75913048-75913128 35 2.27e-04 acctagtgga tggaattc aggggtgctg chr6:130069537-130069617 46 2.43e-04 TCCCAGCGGT AGGAATCC GGGTACACCT chr1:152505947-152506027 9 2.43e-04 CCCGCCCC AGGAATCC AAATCCTGTG chr17:27071449-27071529 4 2.43e-04 CGC AGGAATCC GAGGGGTCCG chr17:27206195-27206275 52 2.86e-04 CCCCAGTGGC TAGAATGC GGAAGAACAG chr10:131926219-13192629 29 2.86e-04 ACCTACAGCC TGGAATCT GGCACTACAA chr14:79064536-79064616 38 2.86e-04 CTCTAGTGGC TAGAATGC AGTAGCATAC chr12:56216119-56216199 58 3.01e-04 CTCTGGTGCC TGGAATCC GAGAACCAAA chr1:8065350-8065430 62 3.17e-04 GTTATGTCCA AGGAATGA AGGCGTTGCC chr20:32497439-32497519 29 3.32e-04 tgcctatgac tggaatga ttgtaaggac chr20:34472354-34472434 11 3.32e-04 TGCCACCTTG TGGAATGA GTGCTCAGTG chr1:6266103-6266183 30 3.76e-04 ACACCCGGCG GGGAATTC CGAGGGTGGG chr3:4985390-4985470 57 4.67e-04 accagcaggt gagaatgc ccatttccct chr1:223897523-223897603 20 5.28e-04 ctctactgga cagaatgc atttgcatat chr6:30910557-30910637 4 5.28e-04 GAA GGGAATCC ACTCCATACA chr1:51658011-51658091 53 5.28e-04 ctctagtgga cagaatgc taagaagctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAATGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:11654403-11654483 1.5e-05 16_[+2]_56 chr14:65308030-65308110 1.5e-05 41_[+2]_31 chr14:36723574-36723654 1.5e-05 50_[+2]_22 chr19:42095033-42095113 1.5e-05 41_[+2]_31 chr9:101553587-101553667 1.5e-05 45_[+2]_27 chr6:32829072-32829152 1.5e-05 33_[+2]_39 chr19:8412776-8412856 1.5e-05 27_[+2]_45 chr15:67066832-67066912 1.5e-05 37_[+2]_35 chr3:124546408-124546488 1.5e-05 64_[+2]_8 chr14:92970299-92970379 1.5e-05 21_[+2]_51 chr1:42065732-42065812 1.5e-05 55_[+2]_17 chr1:101251446-101251526 3.1e-05 32_[+2]_40 chr18:12934619-12934699 3.1e-05 60_[+2]_12 chr3:46977186-46977266 3.1e-05 37_[+2]_35 chr1:153669820-153669900 3.1e-05 54_[+2]_18 chr4:140149021-140149101 3.1e-05 44_[+2]_28 chr4:87980012-87980092 3.1e-05 44_[+2]_28 chr2:159314669-159314749 3.1e-05 41_[+2]_31 chr4:184020118-184020198 3.1e-05 68_[+2]_4 chr10:73722840-73722920 3.1e-05 31_[+2]_41 chr19:21439692-21439772 3.1e-05 59_[+2]_13 chr12:27856755-27856835 3.1e-05 40_[+2]_32 chr22:43176148-43176228 3.1e-05 49_[+2]_23 chr1:29451103-29451183 3.1e-05 50_[+2]_22 chr12:66663718-66663798 3.1e-05 18_[+2]_54 chr1:43599956-43600036 3.1e-05 42_[+2]_30 chr20:39707148-39707228 3.1e-05 47_[+2]_25 chr1:205641360-205641440 3.1e-05 39_[+2]_33 chr10:80917450-80917530 3.1e-05 31_[+2]_41 chr2:48698222-48698302 3.1e-05 53_[+2]_19 chr15:42272225-42272305 4.6e-05 33_[+2]_39 chrX:133671494-133671574 4.6e-05 62_[+2]_10 chr17:55320562-55320642 4.6e-05 21_[+2]_51 chr7:151384859-151384939 4.6e-05 17_[+2]_55 chr10:333927-334007 4.6e-05 39_[+2]_33 chr20:42305839-42305919 4.6e-05 66_[+2]_6 chr15:66220050-66220130 4.6e-05 45_[+2]_27 chr22:22069270-22069350 4.6e-05 24_[+2]_48 chr1:186181840-186181920 4.6e-05 43_[+2]_29 chr2:71147053-71147133 4.6e-05 28_[+2]_44 chr4:84674559-84674639 4.6e-05 49_[+2]_23 chr2:131678129-131678209 4.6e-05 23_[+2]_49 chr19:54770079-54770159 4.6e-05 34_[+2]_38 chr21:43378350-43378430 4.6e-05 46_[+2]_26 chr15:25747109-25747189 4.6e-05 36_[+2]_36 chrX:153599829-153599909 6.1e-05 22_[+2]_50 chr18:3650049-3650129 6.1e-05 41_[+2]_31 chr7:105817337-105817417 6.1e-05 27_[+2]_45 chr1:193080869-193080949 6.1e-05 26_[+2]_46 chr20:44658200-44658280 6.1e-05 17_[+2]_55 chr1:165742713-165742793 6.1e-05 25_[+2]_47 chr10:43872930-43873010 6.1e-05 49_[+2]_23 chr17:30241827-30241907 6.1e-05 41_[+2]_31 chr15:28472664-28472744 7.7e-05 29_[+2]_43 chr17:33760731-33760811 7.7e-05 56_[+2]_16 chr10:52334254-52334334 7.7e-05 48_[+2]_24 chr19:58918499-58918579 7.7e-05 65_[+2]_7 chr12:123344941-12334502 0.00012 44_[+2]_28 chr17:8057662-8057742 0.00012 27_[+2]_45 chr6:30500383-30500463 0.00012 39_[+2]_33 chr10:123811303-12381138 0.00012 36_[+2]_36 chr2:216673838-216673918 0.00012 52_[+2]_20 chr17:38324726-38324806 0.00012 23_[+2]_49 chr1:31846585-31846665 0.00012 52_[+2]_20 chr22:30615179-30615259 0.00012 25_[+2]_47 chr3:39232824-39232904 0.00012 39_[+2]_33 chr1:117636016-117636096 0.00012 65_[+2]_7 chr1:34100588-34100668 0.00012 45_[+2]_27 chr12:96883259-96883339 0.00015 39_[+2]_33 chr7:66459841-66459921 0.00015 12_[+2]_60 chr3:138542747-138542827 0.00015 14_[+2]_58 chr6:161827806-161827886 0.00018 38_[+2]_34 chr10:9253334-9253414 0.00018 64_[+2]_8 chr3:146356677-146356757 0.00018 40_[+2]_32 chr11:100801029-10080110 0.00018 5_[+2]_67 chr1:53647833-53647913 0.00018 43_[+2]_29 chr1:62416256-62416336 0.00018 49_[+2]_23 chr14:21081684-21081764 0.00023 40_[+2]_32 chr1:51186327-51186407 0.00023 34_[+2]_38 chr9:6846036-6846116 0.00023 52_[+2]_20 chr5:5340575-5340655 0.00023 44_[+2]_28 chr3:107140186-107140266 0.00023 65_[+2]_7 chr10:75913048-75913128 0.00023 34_[+2]_38 chr6:130069537-130069617 0.00024 45_[+2]_27 chr1:152505947-152506027 0.00024 8_[+2]_64 chr17:27071449-27071529 0.00024 3_[+2]_69 chr17:27206195-27206275 0.00029 51_[+2]_21 chr10:131926219-13192629 0.00029 28_[+2]_44 chr14:79064536-79064616 0.00029 37_[+2]_35 chr12:56216119-56216199 0.0003 57_[+2]_15 chr1:8065350-8065430 0.00032 61_[+2]_11 chr20:32497439-32497519 0.00033 28_[+2]_44 chr20:34472354-34472434 0.00033 10_[+2]_62 chr1:6266103-6266183 0.00038 29_[+2]_43 chr3:4985390-4985470 0.00047 56_[+2]_16 chr1:223897523-223897603 0.00053 19_[+2]_53 chr6:30910557-30910637 0.00053 3_[+2]_69 chr1:51658011-51658091 0.00053 52_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAATGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGGAATGY width=8 seqs=98 chr1:11654403-11654483 ( 17) AGGAATGT 1 chr14:65308030-65308110 ( 42) AGGAATGT 1 chr14:36723574-36723654 ( 51) AGGAATGT 1 chr19:42095033-42095113 ( 42) AGGAATGT 1 chr9:101553587-101553667 ( 46) AGGAATGT 1 chr6:32829072-32829152 ( 34) AGGAATGT 1 chr19:8412776-8412856 ( 28) AGGAATGT 1 chr15:67066832-67066912 ( 38) AGGAATGT 1 chr3:124546408-124546488 ( 65) AGGAATGT 1 chr14:92970299-92970379 ( 22) AGGAATGT 1 chr1:42065732-42065812 ( 56) AGGAATGT 1 chr1:101251446-101251526 ( 33) AGGAATGC 1 chr18:12934619-12934699 ( 61) AGGAATGC 1 chr3:46977186-46977266 ( 38) AGGAATGC 1 chr1:153669820-153669900 ( 55) AGGAATGC 1 chr4:140149021-140149101 ( 45) AGGAATGC 1 chr4:87980012-87980092 ( 45) AGGAATGC 1 chr2:159314669-159314749 ( 42) AGGAATGC 1 chr4:184020118-184020198 ( 69) AGGAATGC 1 chr10:73722840-73722920 ( 32) AGGAATGC 1 chr19:21439692-21439772 ( 60) AGGAATGC 1 chr12:27856755-27856835 ( 41) AGGAATGC 1 chr22:43176148-43176228 ( 50) AGGAATGC 1 chr1:29451103-29451183 ( 51) AGGAATGC 1 chr12:66663718-66663798 ( 19) AGGAATGC 1 chr1:43599956-43600036 ( 43) AGGAATGC 1 chr20:39707148-39707228 ( 48) AGGAATGC 1 chr1:205641360-205641440 ( 40) AGGAATGC 1 chr10:80917450-80917530 ( 32) AGGAATGC 1 chr2:48698222-48698302 ( 54) AGGAATGC 1 chr15:42272225-42272305 ( 34) TGGAATGT 1 chrX:133671494-133671574 ( 63) TGGAATGT 1 chr17:55320562-55320642 ( 22) TGGAATGT 1 chr7:151384859-151384939 ( 18) TGGAATGT 1 chr10:333927-334007 ( 40) TGGAATGT 1 chr20:42305839-42305919 ( 67) TGGAATGT 1 chr15:66220050-66220130 ( 46) TGGAATGT 1 chr22:22069270-22069350 ( 25) TGGAATGT 1 chr1:186181840-186181920 ( 44) TGGAATGT 1 chr2:71147053-71147133 ( 29) TGGAATGT 1 chr4:84674559-84674639 ( 50) TGGAATGT 1 chr2:131678129-131678209 ( 24) TGGAATGT 1 chr19:54770079-54770159 ( 35) TGGAATGT 1 chr21:43378350-43378430 ( 47) TGGAATGT 1 chr15:25747109-25747189 ( 37) TGGAATGT 1 chrX:153599829-153599909 ( 23) TGGAATGC 1 chr18:3650049-3650129 ( 42) TGGAATGC 1 chr7:105817337-105817417 ( 28) TGGAATGC 1 chr1:193080869-193080949 ( 27) TGGAATGC 1 chr20:44658200-44658280 ( 18) TGGAATGC 1 chr1:165742713-165742793 ( 26) TGGAATGC 1 chr10:43872930-43873010 ( 50) TGGAATGC 1 chr17:30241827-30241907 ( 42) TGGAATGC 1 chr15:28472664-28472744 ( 30) GGGAATGT 1 chr17:33760731-33760811 ( 57) GGGAATGT 1 chr10:52334254-52334334 ( 49) GGGAATGT 1 chr19:58918499-58918579 ( 66) GGGAATGT 1 chr12:123344941-12334502 ( 45) AGGAATTT 1 chr17:8057662-8057742 ( 28) CGGAATGT 1 chr6:30500383-30500463 ( 40) AGGAATTT 1 chr10:123811303-12381138 ( 37) AGGAATTT 1 chr2:216673838-216673918 ( 53) GGGAATGC 1 chr17:38324726-38324806 ( 24) AGGAATTT 1 chr1:31846585-31846665 ( 53) CGGAATGT 1 chr22:30615179-30615259 ( 26) GGGAATGC 1 chr3:39232824-39232904 ( 40) AGGAATTT 1 chr1:117636016-117636096 ( 66) CGGAATGT 1 chr1:34100588-34100668 ( 46) CGGAATGT 1 chr12:96883259-96883339 ( 40) CGGAATGC 1 chr7:66459841-66459921 ( 13) CGGAATGC 1 chr3:138542747-138542827 ( 15) AGGAATTC 1 chr6:161827806-161827886 ( 39) TGGAATTT 1 chr10:9253334-9253414 ( 65) TGGAATTT 1 chr3:146356677-146356757 ( 41) AAGAATGT 1 chr11:100801029-10080110 ( 6) TGGAATTT 1 chr1:53647833-53647913 ( 44) AAGAATGT 1 chr1:62416256-62416336 ( 50) AAGAATGT 1 chr14:21081684-21081764 ( 41) AAGAATGC 1 chr1:51186327-51186407 ( 35) AGGAATCT 1 chr9:6846036-6846116 ( 53) AAGAATGC 1 chr5:5340575-5340655 ( 45) TGGAATTC 1 chr3:107140186-107140266 ( 66) AGGAATCT 1 chr10:75913048-75913128 ( 35) TGGAATTC 1 chr6:130069537-130069617 ( 46) AGGAATCC 1 chr1:152505947-152506027 ( 9) AGGAATCC 1 chr17:27071449-27071529 ( 4) AGGAATCC 1 chr17:27206195-27206275 ( 52) TAGAATGC 1 chr10:131926219-13192629 ( 29) TGGAATCT 1 chr14:79064536-79064616 ( 38) TAGAATGC 1 chr12:56216119-56216199 ( 58) TGGAATCC 1 chr1:8065350-8065430 ( 62) AGGAATGA 1 chr20:32497439-32497519 ( 29) TGGAATGA 1 chr20:34472354-34472434 ( 11) TGGAATGA 1 chr1:6266103-6266183 ( 30) GGGAATTC 1 chr3:4985390-4985470 ( 57) GAGAATGC 1 chr1:223897523-223897603 ( 20) CAGAATGC 1 chr6:30910557-30910637 ( 4) GGGAATCC 1 chr1:51658011-51658091 ( 53) CAGAATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAATGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.45311 E= 1.0e-073 94 -163 -149 54 -130 -1326 180 -1326 -1326 -1326 195 -1326 200 -1326 -1326 -1326 200 -1326 -1326 -1326 -1326 -1326 -1326 207 -1326 -163 163 -96 -303 92 -1326 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAATGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 1.0e-073 0.479592 0.081633 0.091837 0.346939 0.102041 0.000000 0.897959 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.081633 0.795918 0.122449 0.030612 0.479592 0.000000 0.489796 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAATGY MEME-2 regular expression -------------------------------------------------------------------------------- [AT]GGAATG[TC] -------------------------------------------------------------------------------- Time 8.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCCAYC MEME-3 width = 8 sites = 34 llr = 309 E-value = 9.5e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCCAYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::6:: pos.-specific C a::aa36a probability G ::a::::: matrix T :9:::14: bits 2.1 * ** * 1.9 * *** * 1.7 * *** * 1.4 ***** * Relative 1.2 ***** * Entropy 1.0 ***** * (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCCACC consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCAYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:39504711-39504791 32 1.59e-05 GAATACAAGC CTGCCACC TGGAGGAAGG chr2:37012497-37012577 8 1.59e-05 AACTCCA CTGCCACC TGCTGGCAAC chr22:38379083-38379163 15 1.59e-05 GCCCCACGGT CTGCCACC CGCAAAATTC chr14:76027420-76027500 63 1.59e-05 CGGGTTGGTG CTGCCACC TAGTGACAGA chr2:20490962-20491042 20 1.59e-05 TCCCTCAGTC CTGCCACC TTGTGGAAGA chr3:32939571-32939651 50 1.59e-05 GACTTCCCAG CTGCCACC ACCCTGTCCC chr19:36001415-36001495 38 1.59e-05 AGCCGCGATC CTGCCACC AGGGGGCAGC chr9:101553587-101553667 31 1.59e-05 TGGAGGCCTG CTGCCACC TGCTGGCAGG chr3:107140186-107140266 43 1.59e-05 CACTAAAATA CTGCCACC TTCAGGAAGA chr17:31264092-31264172 28 1.59e-05 TAAGTTTGTG CTGCCACC TGGTGGCTGG chr18:20284432-20284512 38 1.59e-05 GGCTGCTATA CTGCCACC TTGTGGTAAA chr7:72300699-72300779 39 3.09e-05 GTCTTCACTG CTGCCATC TAGGGACTGG chr8:125452732-125452812 69 3.09e-05 CAGGTGCCTG CTGCCATC TAGT chr12:4386239-4386319 40 3.09e-05 TGGGGCTCTG CTGCCATC TAGTGGAAGA chr18:24229811-24229891 47 3.09e-05 ATGTGTGTCA CTGCCATC TGCTGGATGG chr11:100801029-10080110 70 3.09e-05 TTTAACTTTG CTGCCATC TAG chr15:25747109-25747189 22 3.09e-05 TATGTGGCTA CTGCCATC TGTTGGATGG chr1:11654403-11654483 2 4.70e-05 C CTGCCCCC TCTAGGCAGG chr19:21439692-21439772 45 4.70e-05 ttgttattca ctgccccc atgagggagg chr4:170232963-170233043 18 4.70e-05 CAACTCTTTA CTGCCCCC AGTGGAAAAA chr19:54770079-54770159 20 4.70e-05 GGAAGGTTTG CTGCCCCC TCGTGGGTGG chr12:96883259-96883339 13 6.21e-05 CTTTCTCGCT CTGCCCTC CAGGGGCCGC chr1:152505947-152506027 46 6.21e-05 CTGTCCCATG CTGCCCTC TACAGACACC chr2:27906530-27906610 33 6.21e-05 TTAGGGTATA CTGCCCTC TGGTGGCAGA chr18:42964543-42964623 13 6.21e-05 TTAGGCACTG CTGCCCTC TGCTGGATGG chr1:34100588-34100668 31 6.21e-05 TTGTGCCCTT CTGCCCTC TTGTGTCCGG chr13:20558981-20559061 47 9.40e-05 TGACACATAG CAGCCACC AGAGGGAACT chr4:84674559-84674639 35 9.40e-05 ggaagtattt ctgcctcc tcctggctgg chr3:123443243-123443323 62 9.40e-05 CACAAGGAGG CTGCCTCC TTGAAGTCAA chr12:56551677-56551757 35 9.40e-05 AAGCACGTTC CAGCCACC AGGAGGCCAC chr1:205641360-205641440 59 9.40e-05 AAGAATGCAA CTGCCTCC CCAGGTGCTG chr15:67066832-67066912 17 9.40e-05 TCGGCGCAGA CAGCCACC ACCCTCTGGT chr20:30082079-30082159 5 1.24e-04 gcag cagccatc atattcacat chr5:38265813-38265893 21 1.57e-04 AATAAAATTT CTGCCAGC AGAGGGCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCAYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:39504711-39504791 1.6e-05 31_[+3]_41 chr2:37012497-37012577 1.6e-05 7_[+3]_65 chr22:38379083-38379163 1.6e-05 14_[+3]_58 chr14:76027420-76027500 1.6e-05 62_[+3]_10 chr2:20490962-20491042 1.6e-05 19_[+3]_53 chr3:32939571-32939651 1.6e-05 49_[+3]_23 chr19:36001415-36001495 1.6e-05 37_[+3]_35 chr9:101553587-101553667 1.6e-05 30_[+3]_42 chr3:107140186-107140266 1.6e-05 42_[+3]_30 chr17:31264092-31264172 1.6e-05 27_[+3]_45 chr18:20284432-20284512 1.6e-05 37_[+3]_35 chr7:72300699-72300779 3.1e-05 38_[+3]_34 chr8:125452732-125452812 3.1e-05 68_[+3]_4 chr12:4386239-4386319 3.1e-05 39_[+3]_33 chr18:24229811-24229891 3.1e-05 46_[+3]_26 chr11:100801029-10080110 3.1e-05 69_[+3]_3 chr15:25747109-25747189 3.1e-05 21_[+3]_51 chr1:11654403-11654483 4.7e-05 1_[+3]_71 chr19:21439692-21439772 4.7e-05 44_[+3]_28 chr4:170232963-170233043 4.7e-05 17_[+3]_55 chr19:54770079-54770159 4.7e-05 19_[+3]_53 chr12:96883259-96883339 6.2e-05 12_[+3]_60 chr1:152505947-152506027 6.2e-05 45_[+3]_27 chr2:27906530-27906610 6.2e-05 32_[+3]_40 chr18:42964543-42964623 6.2e-05 12_[+3]_60 chr1:34100588-34100668 6.2e-05 30_[+3]_42 chr13:20558981-20559061 9.4e-05 46_[+3]_26 chr4:84674559-84674639 9.4e-05 34_[+3]_38 chr3:123443243-123443323 9.4e-05 61_[+3]_11 chr12:56551677-56551757 9.4e-05 34_[+3]_38 chr1:205641360-205641440 9.4e-05 58_[+3]_14 chr15:67066832-67066912 9.4e-05 16_[+3]_56 chr20:30082079-30082159 0.00012 4_[+3]_68 chr5:38265813-38265893 0.00016 20_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCAYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCCAYC width=8 seqs=34 chr7:39504711-39504791 ( 32) CTGCCACC 1 chr2:37012497-37012577 ( 8) CTGCCACC 1 chr22:38379083-38379163 ( 15) CTGCCACC 1 chr14:76027420-76027500 ( 63) CTGCCACC 1 chr2:20490962-20491042 ( 20) CTGCCACC 1 chr3:32939571-32939651 ( 50) CTGCCACC 1 chr19:36001415-36001495 ( 38) CTGCCACC 1 chr9:101553587-101553667 ( 31) CTGCCACC 1 chr3:107140186-107140266 ( 43) CTGCCACC 1 chr17:31264092-31264172 ( 28) CTGCCACC 1 chr18:20284432-20284512 ( 38) CTGCCACC 1 chr7:72300699-72300779 ( 39) CTGCCATC 1 chr8:125452732-125452812 ( 69) CTGCCATC 1 chr12:4386239-4386319 ( 40) CTGCCATC 1 chr18:24229811-24229891 ( 47) CTGCCATC 1 chr11:100801029-10080110 ( 70) CTGCCATC 1 chr15:25747109-25747189 ( 22) CTGCCATC 1 chr1:11654403-11654483 ( 2) CTGCCCCC 1 chr19:21439692-21439772 ( 45) CTGCCCCC 1 chr4:170232963-170233043 ( 18) CTGCCCCC 1 chr19:54770079-54770159 ( 20) CTGCCCCC 1 chr12:96883259-96883339 ( 13) CTGCCCTC 1 chr1:152505947-152506027 ( 46) CTGCCCTC 1 chr2:27906530-27906610 ( 33) CTGCCCTC 1 chr18:42964543-42964623 ( 13) CTGCCCTC 1 chr1:34100588-34100668 ( 31) CTGCCCTC 1 chr13:20558981-20559061 ( 47) CAGCCACC 1 chr4:84674559-84674639 ( 35) CTGCCTCC 1 chr3:123443243-123443323 ( 62) CTGCCTCC 1 chr12:56551677-56551757 ( 35) CAGCCACC 1 chr1:205641360-205641440 ( 59) CTGCCTCC 1 chr15:67066832-67066912 ( 17) CAGCCACC 1 chr20:30082079-30082159 ( 5) CAGCCATC 1 chr5:38265813-38265893 ( 21) CTGCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCAYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.86128 E= 9.5e-013 -1173 198 -1173 -1173 -109 -1173 -1173 189 -1173 -1173 195 -1173 -1173 198 -1173 -1173 -1173 198 -1173 -1173 137 6 -1173 -143 -1173 128 -313 57 -1173 198 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCAYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 9.5e-013 0.000000 1.000000 0.000000 0.000000 0.117647 0.000000 0.000000 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.647059 0.264706 0.000000 0.088235 0.000000 0.617647 0.029412 0.352941 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCAYC MEME-3 regular expression -------------------------------------------------------------------------------- CTGCC[AC][CT]C -------------------------------------------------------------------------------- Time 12.11 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTRGWGG MEME-4 width = 8 sites = 64 llr = 495 E-value = 5.7e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTRGWGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2::5:3:: pos.-specific C 5a::3::: probability G :::571aa matrix T 3:a::6:: bits 2.1 ** 1.9 ** ** 1.7 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 **** ** (11.2 bits) 0.8 **** ** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTAGTGG consensus T GCA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTRGWGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:146356677-146356757 29 1.56e-05 AACAGAGCCA CCTAGTGG GAAGAAGAAT chr8:96249524-96249604 52 1.56e-05 AGATACTTCT CCTAGTGG GAGGAATTGG chr9:112580315-112580395 29 1.56e-05 TGTAGCGCCT CCTAGTGG AGGGAATTTC chr10:75913048-75913128 26 1.56e-05 gctattggca cctagtgg atggaattca chr2:25014054-25014134 40 1.56e-05 atgcccggcc CCTAGTGG AAGGATTTCT chr13:40186344-40186424 19 1.56e-05 CCAGGCGCCT CCTAGTGG CAGAAATGCA chr20:6362694-6362774 42 1.56e-05 GCACGCTGTC CCTAGTGG TAGGAATTTC chr10:123811303-12381138 28 3.16e-05 CAGAGCAACC CCTGGTGG CAGGAATTTT chr17:43909653-43909733 19 3.16e-05 TGAAGCTCCA CCTGGTGG TGAGAATTCA chr15:66220050-66220130 37 3.16e-05 agactgcagc cctggtgg ctggaatgta chr14:28141426-28141506 49 3.16e-05 GAGATAGCCA CCTGGTGG AAACAATGCA chr10:43872930-43873010 23 3.16e-05 CGCAAACCAC CCTGGTGG AGGGAATTAG chr18:20143234-20143314 37 4.63e-05 GTTGTCACCC TCTAGTGG ATGATCTATG chr7:138759951-138760031 33 4.63e-05 CATGTCGCCC TCTAGTGG TAAAAATCCA chr10:113897298-11389737 33 4.63e-05 GCTGGCGCCC TCTAGTGG AAAAAATGGC chr1:46347419-46347499 37 4.63e-05 GATGGTTCCA TCTAGTGG GAAAAATGTT chr1:51658011-51658091 44 4.63e-05 actactggcc tctagtgg acagaatgct chr14:79064536-79064616 29 4.63e-05 TCTGTTGCCC TCTAGTGG CTAGAATGCA chr9:6846036-6846116 44 6.14e-05 TGGCACTGCC TCTGGTGG GAAGAATGCA chr15:67066832-67066912 29 6.14e-05 GCCACCACCC TCTGGTGG CAGGAATGTG chr2:46503992-46504072 23 7.77e-05 TCTAAGCTCC CCTAGAGG AAAAAATGTA chr4:87980012-87980092 18 1.10e-04 ggcaggagcc actagtgg actgtattgg chr22:40349996-40350076 23 1.10e-04 ATTCCAGCCA CCTGGAGG CATTTCATTC chr1:29451103-29451183 42 1.10e-04 CCCTCCCGCC CCTGGAGG CAGGAATGCA chr9:101553587-101553667 19 1.10e-04 GGCATTGCGG CCTGGAGG CCTGCTGCCA chr21:43378350-43378430 38 1.10e-04 ATTTCCACCA CCTGGAGG CTGGAATGTG chr15:28472664-28472744 21 1.41e-04 aatcctgccc actggtgg tgggaatgta chr15:49148190-49148270 45 1.41e-04 TGAAACACCA CCTACTGG TGGCTGCTTC chr18:12934619-12934699 41 1.57e-04 CATAGTGCCG CCTGCTGG CTCCTGTCTC chr1:153669820-153669900 7 1.57e-04 GGTTTC CCTGCTGG ACCCACCCCT chr10:333927-334007 31 1.57e-04 tgtttctcct cctgctgg ctggaatgtg chr1:31846585-31846665 63 1.57e-04 CGGAATGTCT CCTGCTGG CCCTCCTCCG chr19:58918499-58918579 57 1.57e-04 ATATGGTCCA CCTGCTGG TGGGAATGTA chr1:201315879-201315959 34 1.57e-04 GGAACTTCCC CCTGCTGG CAGGAACTTC chr3:124546408-124546488 56 1.57e-04 accctcacgc cctgctgg taggaatgta chr9:87548003-87548083 38 1.72e-04 cattccaagc tctagagg gcATCACAAT chr1:75699146-75699226 51 1.72e-04 AATACTTGCC TCTAGAGG GCAATGCTTC chr3:32939571-32939651 23 1.72e-04 CAGATGTCCC TCTAGAGG CAAATATGTG chr19:8412776-8412856 11 1.72e-04 gtttttggcc tctagagg gcggaggcca chr1:223897523-223897603 11 2.03e-04 ctgtagtgcc tctactgg acagaatgca chr11:109817080-10981716 28 2.33e-04 GGCTCCGACC ACTAGAGG GAACTGCTCC chr16:3081763-3081843 62 2.33e-04 catttcatcc actagagg gagaatcact chr17:55320562-55320642 69 2.33e-04 TTGCTCGGCC ACTAGAGG GAAC chr2:216673838-216673918 44 2.33e-04 gcacttttgc tctgctgg tgggaatgca chr1:118077765-118077845 33 2.33e-04 AATTTTTGCC ACTAGAGG GCAGTAGTAT chr12:109825309-10982538 45 2.33e-04 catttttgtc actagagg gcactggagg chr1:117636016-117636096 56 2.33e-04 ATCCTGCCTG TCTGCTGG CTCGGAATGT chr1:42065732-42065812 47 2.33e-04 actgttgcac tctgctgg taggaatgta chr7:22626559-22626639 62 2.33e-04 CATTCCTCCC ACTAGAGG ACTCTGTCCT chr2:220354996-220355076 41 2.83e-04 cattcttgcc cctAGGGG TCCCTGCTCT chr5:142093103-142093183 19 3.32e-04 CAGAGTGCCC CCTGCAGG TCAGGACGGG chr10:82423996-82424076 25 3.32e-04 AGGATTTCTG CCTGCAGG GGGCAGTGCA chr11:119350486-11935056 63 3.32e-04 accagcaggg cctggggg ttccagtttc chr10:52334254-52334334 40 3.32e-04 acccttgcac actactgg tgggaatgta chr22:30615179-30615259 17 3.48e-04 acctctgtcc actgctgg tgggaatgcg chr3:46977186-46977266 29 3.79e-04 GTAGGGCCCA TCTAGGGG TAGGAATGCA chr17:30241827-30241907 33 3.79e-04 tctcactcca tctacagg ttggaatgca chr14:65308030-65308110 33 4.11e-04 ACCCAAGCCC TCTGCAGG AAGGAATGTG chr12:123344941-12334502 24 4.43e-04 TCCCGTCGCC ACTAGGGG GCAGCCACGC chr3:67164390-67164470 47 4.43e-04 CATCCCTTCC ACTagggg gcagggtggt chr12:66663718-66663798 41 4.43e-04 TTAGAATTCC ACTAGGGG TCACTTTCTC chr17:27206195-27206275 13 4.93e-04 CCAAGGCGCA ACTGGGGG CAAGGCCAGT chr1:6266103-6266183 1 5.10e-04 . CCTGCGGG TCACCCAGAG chr6:32829072-32829152 25 5.10e-04 aaaaagggcc cctgcggg caggaatgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTRGWGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:146356677-146356757 1.6e-05 28_[+4]_44 chr8:96249524-96249604 1.6e-05 51_[+4]_21 chr9:112580315-112580395 1.6e-05 28_[+4]_44 chr10:75913048-75913128 1.6e-05 25_[+4]_47 chr2:25014054-25014134 1.6e-05 39_[+4]_33 chr13:40186344-40186424 1.6e-05 18_[+4]_54 chr20:6362694-6362774 1.6e-05 41_[+4]_31 chr10:123811303-12381138 3.2e-05 27_[+4]_45 chr17:43909653-43909733 3.2e-05 18_[+4]_54 chr15:66220050-66220130 3.2e-05 36_[+4]_36 chr14:28141426-28141506 3.2e-05 48_[+4]_24 chr10:43872930-43873010 3.2e-05 22_[+4]_50 chr18:20143234-20143314 4.6e-05 36_[+4]_36 chr7:138759951-138760031 4.6e-05 32_[+4]_40 chr10:113897298-11389737 4.6e-05 32_[+4]_40 chr1:46347419-46347499 4.6e-05 36_[+4]_36 chr1:51658011-51658091 4.6e-05 43_[+4]_29 chr14:79064536-79064616 4.6e-05 28_[+4]_44 chr9:6846036-6846116 6.1e-05 43_[+4]_29 chr15:67066832-67066912 6.1e-05 28_[+4]_44 chr2:46503992-46504072 7.8e-05 22_[+4]_50 chr4:87980012-87980092 0.00011 17_[+4]_55 chr22:40349996-40350076 0.00011 22_[+4]_50 chr1:29451103-29451183 0.00011 41_[+4]_31 chr9:101553587-101553667 0.00011 18_[+4]_54 chr21:43378350-43378430 0.00011 37_[+4]_35 chr15:28472664-28472744 0.00014 20_[+4]_52 chr15:49148190-49148270 0.00014 44_[+4]_28 chr18:12934619-12934699 0.00016 40_[+4]_32 chr1:153669820-153669900 0.00016 6_[+4]_66 chr10:333927-334007 0.00016 30_[+4]_42 chr1:31846585-31846665 0.00016 62_[+4]_10 chr19:58918499-58918579 0.00016 56_[+4]_16 chr1:201315879-201315959 0.00016 33_[+4]_39 chr3:124546408-124546488 0.00016 55_[+4]_17 chr9:87548003-87548083 0.00017 37_[+4]_35 chr1:75699146-75699226 0.00017 50_[+4]_22 chr3:32939571-32939651 0.00017 22_[+4]_50 chr19:8412776-8412856 0.00017 10_[+4]_62 chr1:223897523-223897603 0.0002 10_[+4]_62 chr11:109817080-10981716 0.00023 27_[+4]_45 chr16:3081763-3081843 0.00023 61_[+4]_11 chr17:55320562-55320642 0.00023 68_[+4]_4 chr2:216673838-216673918 0.00023 43_[+4]_29 chr1:118077765-118077845 0.00023 32_[+4]_40 chr12:109825309-10982538 0.00023 44_[+4]_28 chr1:117636016-117636096 0.00023 55_[+4]_17 chr1:42065732-42065812 0.00023 46_[+4]_26 chr7:22626559-22626639 0.00023 61_[+4]_11 chr2:220354996-220355076 0.00028 40_[+4]_32 chr5:142093103-142093183 0.00033 18_[+4]_54 chr10:82423996-82424076 0.00033 24_[+4]_48 chr11:119350486-11935056 0.00033 62_[+4]_10 chr10:52334254-52334334 0.00033 39_[+4]_33 chr22:30615179-30615259 0.00035 16_[+4]_56 chr3:46977186-46977266 0.00038 28_[+4]_44 chr17:30241827-30241907 0.00038 32_[+4]_40 chr14:65308030-65308110 0.00041 32_[+4]_40 chr12:123344941-12334502 0.00044 23_[+4]_49 chr3:67164390-67164470 0.00044 46_[+4]_26 chr12:66663718-66663798 0.00044 40_[+4]_32 chr17:27206195-27206275 0.00049 12_[+4]_60 chr1:6266103-6266183 0.00051 [+4]_72 chr6:32829072-32829152 0.00051 24_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTRGWGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTRGWGG width=8 seqs=64 chr3:146356677-146356757 ( 29) CCTAGTGG 1 chr8:96249524-96249604 ( 52) CCTAGTGG 1 chr9:112580315-112580395 ( 29) CCTAGTGG 1 chr10:75913048-75913128 ( 26) CCTAGTGG 1 chr2:25014054-25014134 ( 40) CCTAGTGG 1 chr13:40186344-40186424 ( 19) CCTAGTGG 1 chr20:6362694-6362774 ( 42) CCTAGTGG 1 chr10:123811303-12381138 ( 28) CCTGGTGG 1 chr17:43909653-43909733 ( 19) CCTGGTGG 1 chr15:66220050-66220130 ( 37) CCTGGTGG 1 chr14:28141426-28141506 ( 49) CCTGGTGG 1 chr10:43872930-43873010 ( 23) CCTGGTGG 1 chr18:20143234-20143314 ( 37) TCTAGTGG 1 chr7:138759951-138760031 ( 33) TCTAGTGG 1 chr10:113897298-11389737 ( 33) TCTAGTGG 1 chr1:46347419-46347499 ( 37) TCTAGTGG 1 chr1:51658011-51658091 ( 44) TCTAGTGG 1 chr14:79064536-79064616 ( 29) TCTAGTGG 1 chr9:6846036-6846116 ( 44) TCTGGTGG 1 chr15:67066832-67066912 ( 29) TCTGGTGG 1 chr2:46503992-46504072 ( 23) CCTAGAGG 1 chr4:87980012-87980092 ( 18) ACTAGTGG 1 chr22:40349996-40350076 ( 23) CCTGGAGG 1 chr1:29451103-29451183 ( 42) CCTGGAGG 1 chr9:101553587-101553667 ( 19) CCTGGAGG 1 chr21:43378350-43378430 ( 38) CCTGGAGG 1 chr15:28472664-28472744 ( 21) ACTGGTGG 1 chr15:49148190-49148270 ( 45) CCTACTGG 1 chr18:12934619-12934699 ( 41) CCTGCTGG 1 chr1:153669820-153669900 ( 7) CCTGCTGG 1 chr10:333927-334007 ( 31) CCTGCTGG 1 chr1:31846585-31846665 ( 63) CCTGCTGG 1 chr19:58918499-58918579 ( 57) CCTGCTGG 1 chr1:201315879-201315959 ( 34) CCTGCTGG 1 chr3:124546408-124546488 ( 56) CCTGCTGG 1 chr9:87548003-87548083 ( 38) TCTAGAGG 1 chr1:75699146-75699226 ( 51) TCTAGAGG 1 chr3:32939571-32939651 ( 23) TCTAGAGG 1 chr19:8412776-8412856 ( 11) TCTAGAGG 1 chr1:223897523-223897603 ( 11) TCTACTGG 1 chr11:109817080-10981716 ( 28) ACTAGAGG 1 chr16:3081763-3081843 ( 62) ACTAGAGG 1 chr17:55320562-55320642 ( 69) ACTAGAGG 1 chr2:216673838-216673918 ( 44) TCTGCTGG 1 chr1:118077765-118077845 ( 33) ACTAGAGG 1 chr12:109825309-10982538 ( 45) ACTAGAGG 1 chr1:117636016-117636096 ( 56) TCTGCTGG 1 chr1:42065732-42065812 ( 47) TCTGCTGG 1 chr7:22626559-22626639 ( 62) ACTAGAGG 1 chr2:220354996-220355076 ( 41) CCTAGGGG 1 chr5:142093103-142093183 ( 19) CCTGCAGG 1 chr10:82423996-82424076 ( 25) CCTGCAGG 1 chr11:119350486-11935056 ( 63) CCTGGGGG 1 chr10:52334254-52334334 ( 40) ACTACTGG 1 chr22:30615179-30615259 ( 17) ACTGCTGG 1 chr3:46977186-46977266 ( 29) TCTAGGGG 1 chr17:30241827-30241907 ( 33) TCTACAGG 1 chr14:65308030-65308110 ( 33) TCTGCAGG 1 chr12:123344941-12334502 ( 24) ACTAGGGG 1 chr3:67164390-67164470 ( 47) ACTAGGGG 1 chr12:66663718-66663798 ( 41) ACTAGGGG 1 chr17:27206195-27206275 ( 13) ACTGGGGG 1 chr1:6266103-6266183 ( 1) CCTGCGGG 1 chr6:32829072-32829152 ( 25) CCTGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTRGWGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.47551 E= 5.7e-016 -20 93 -1264 32 -1264 198 -1264 -1264 -1264 -1264 -1264 207 108 -1264 86 -1264 -1264 30 141 -1264 25 -1264 -88 124 -1264 -1264 195 -1264 -1264 -1264 195 -1264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTRGWGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 5.7e-016 0.218750 0.484375 0.000000 0.296875 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.531250 0.000000 0.468750 0.000000 0.000000 0.312500 0.687500 0.000000 0.296875 0.000000 0.140625 0.562500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTRGWGG MEME-4 regular expression -------------------------------------------------------------------------------- [CTA]CT[AG][GC][TA]GG -------------------------------------------------------------------------------- Time 15.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGCAGR MEME-5 width = 8 sites = 23 llr = 214 E-value = 6.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGCAGR MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::a:4 pos.-specific C 9a:3a::: probability G 1::7::a6 matrix T :::::::: bits 2.1 ** ** 1.9 ** *** 1.7 ** *** 1.4 *** *** Relative 1.2 *** *** Entropy 1.0 ******** (13.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGCAGG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCAGR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:93251857-93251937 33 1.74e-05 CGCATGGCTA CCAGCAGG TGGTATCCAT chr2:20490962-20491042 71 1.74e-05 ACTCATGTGA CCAGCAGG GA chr17:26075248-26075328 52 1.74e-05 CACATTCCCT CCAGCAGG GGATGCCCTT chr11:119350486-11935056 54 1.74e-05 tacattccca ccagcagg gcctgggggt chr20:62066362-62066442 40 1.74e-05 tacattccta ccagcagg gggggcggtg chr3:4985390-4985470 48 1.74e-05 tgcattccca ccagcagg tgagaatgcc chr5:176102799-176102879 44 1.74e-05 cacattccca ccagcagg gcgtgagggt chr2:55001147-55001227 11 1.74e-05 tgcattccag ccagcagg aggagaaaga chr20:30082079-30082159 28 1.74e-05 cacattccag ccagcagg aagcggtaag chr12:52288870-52288950 47 3.42e-05 AGCATGTTTT CCAGCAGA GGGAGCCTCT chr8:143735039-143735119 61 3.42e-05 tctaccggga ccagcaga ccagcagctc chr16:67138163-67138243 36 3.42e-05 caGATTCCAC CCAGCAGA GGGCAGGGTA chr9:86198219-86198299 36 3.42e-05 CCCATTCCTG CCAGCAGA GGGAGGGGTA chr1:38385114-38385194 34 5.13e-05 CCTGCACACA CCACCAGG GGGACATTCC chr3:47462644-47462724 56 5.13e-05 CACCCCGTCT CCACCAGG GGGCAGAAGA chr1:201975256-201975336 46 6.78e-05 TAAATTTCTT CCACCAGA GGTCCTCACT chr5:142093103-142093183 5 6.78e-05 GGAC CCACCAGA GTGCCCCCTG chr14:50320657-50320737 44 6.78e-05 AGAATTCCTA CCACCAGA AGGCGACTCT chr12:75728224-75728304 46 6.78e-05 GAAATTCCCT CCACCAGA GGGCGACTCA chr7:72756691-72756771 53 6.78e-05 AGAATTCCAG CCACCAGA TGTCACCTCC chr1:24045066-24045146 64 8.55e-05 gacattccag gcagcagg aacagcaag chr19:42095033-42095113 65 8.55e-05 CTGAGGTGCT GCAGCAGG AAGGTGGC chr16:15644804-15644884 63 8.55e-05 GCAGGAACTC GCAGCAGG TGACTGAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCAGR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:93251857-93251937 1.7e-05 32_[+5]_40 chr2:20490962-20491042 1.7e-05 70_[+5]_2 chr17:26075248-26075328 1.7e-05 51_[+5]_21 chr11:119350486-11935056 1.7e-05 53_[+5]_19 chr20:62066362-62066442 1.7e-05 39_[+5]_33 chr3:4985390-4985470 1.7e-05 47_[+5]_25 chr5:176102799-176102879 1.7e-05 43_[+5]_29 chr2:55001147-55001227 1.7e-05 10_[+5]_62 chr20:30082079-30082159 1.7e-05 27_[+5]_45 chr12:52288870-52288950 3.4e-05 46_[+5]_26 chr8:143735039-143735119 3.4e-05 60_[+5]_12 chr16:67138163-67138243 3.4e-05 35_[+5]_37 chr9:86198219-86198299 3.4e-05 35_[+5]_37 chr1:38385114-38385194 5.1e-05 33_[+5]_39 chr3:47462644-47462724 5.1e-05 55_[+5]_17 chr1:201975256-201975336 6.8e-05 45_[+5]_27 chr5:142093103-142093183 6.8e-05 4_[+5]_68 chr14:50320657-50320737 6.8e-05 43_[+5]_29 chr12:75728224-75728304 6.8e-05 45_[+5]_27 chr7:72756691-72756771 6.8e-05 52_[+5]_20 chr1:24045066-24045146 8.6e-05 63_[+5]_9 chr19:42095033-42095113 8.6e-05 64_[+5]_8 chr16:15644804-15644884 8.6e-05 62_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCAGR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGCAGR width=8 seqs=23 chr7:93251857-93251937 ( 33) CCAGCAGG 1 chr2:20490962-20491042 ( 71) CCAGCAGG 1 chr17:26075248-26075328 ( 52) CCAGCAGG 1 chr11:119350486-11935056 ( 54) CCAGCAGG 1 chr20:62066362-62066442 ( 40) CCAGCAGG 1 chr3:4985390-4985470 ( 48) CCAGCAGG 1 chr5:176102799-176102879 ( 44) CCAGCAGG 1 chr2:55001147-55001227 ( 11) CCAGCAGG 1 chr20:30082079-30082159 ( 28) CCAGCAGG 1 chr12:52288870-52288950 ( 47) CCAGCAGA 1 chr8:143735039-143735119 ( 61) CCAGCAGA 1 chr16:67138163-67138243 ( 36) CCAGCAGA 1 chr9:86198219-86198299 ( 36) CCAGCAGA 1 chr1:38385114-38385194 ( 34) CCACCAGG 1 chr3:47462644-47462724 ( 56) CCACCAGG 1 chr1:201975256-201975336 ( 46) CCACCAGA 1 chr5:142093103-142093183 ( 5) CCACCAGA 1 chr14:50320657-50320737 ( 44) CCACCAGA 1 chr12:75728224-75728304 ( 46) CCACCAGA 1 chr7:72756691-72756771 ( 53) CCACCAGA 1 chr1:24045066-24045146 ( 64) GCAGCAGG 1 chr19:42095033-42095113 ( 65) GCAGCAGG 1 chr16:15644804-15644884 ( 63) GCAGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCAGR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.23674 E= 6.8e-003 -1117 178 -98 -1117 -1117 198 -1117 -1117 200 -1117 -1117 -1117 -1117 26 143 -1117 -1117 198 -1117 -1117 200 -1117 -1117 -1117 -1117 -1117 195 -1117 64 -1117 124 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCAGR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.8e-003 0.000000 0.869565 0.130435 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.304348 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.391304 0.000000 0.608696 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCAGR MEME-5 regular expression -------------------------------------------------------------------------------- CCA[GC]CAG[GA] -------------------------------------------------------------------------------- Time 18.82 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:152091477-152091557 2.84e-02 35_[+1(1.36e-05)]_37 chr18:20284432-20284512 1.54e-02 37_[+3(1.59e-05)]_35 chr7:22626559-22626639 5.13e-04 50_[+1(2.77e-05)]_22 chr1:157550122-157550202 1.47e-01 80 chr17:30241827-30241907 1.45e-02 41_[+2(6.12e-05)]_31 chr1:34100588-34100668 3.12e-03 30_[+3(6.21e-05)]_42 chr1:42065732-42065812 5.51e-03 55_[+2(1.52e-05)]_17 chr20:6362694-6362774 1.31e-04 41_[+4(1.56e-05)]_31 chr7:72756691-72756771 2.80e-05 52_[+5(6.78e-05)]_20 chr14:79314746-79314826 7.42e-02 80 chr5:96379925-96380005 1.89e-02 80 chr12:69809645-69809725 4.34e-03 62_[+1(8.42e-05)]_10 chr14:79064536-79064616 9.95e-04 28_[+4(4.63e-05)]_44 chr15:25747109-25747189 1.33e-03 21_[+3(3.09e-05)]_7_[+2(4.58e-05)]_\ 36 chr20:30082079-30082159 4.57e-05 18_[+1(4.21e-05)]_1_[+5(1.74e-05)]_\ 45 chr2:55001147-55001227 3.06e-05 1_[+1(5.69e-05)]_1_[+5(1.74e-05)]_\ 62 chr1:51658011-51658091 1.44e-03 43_[+4(4.63e-05)]_29 chr7:33756342-33756422 5.66e-03 45_[+1(4.21e-05)]_27 chr13:40186344-40186424 1.33e-03 18_[+4(1.56e-05)]_54 chr14:92970299-92970379 1.21e-02 21_[+2(1.52e-05)]_51 chr10:131926219-13192629 5.30e-02 80 chr2:48698222-48698302 9.23e-03 53_[+2(3.14e-05)]_19 chr6:160054386-160054466 2.00e-01 80 chr7:153129354-153129434 1.19e-01 80 chr22:39930912-39930992 4.53e-02 80 chr12:75728224-75728304 4.52e-03 45_[+5(6.78e-05)]_27 chr16:15644804-15644884 1.18e-01 62_[+5(8.55e-05)]_10 chr16:89772469-89772549 4.02e-02 80 chr11:68899167-68899247 2.94e-03 26_[+1(1.36e-05)]_46 chr2:46503992-46504072 1.76e-02 22_[+4(7.77e-05)]_50 chr10:80917450-80917530 1.22e-03 31_[+2(3.14e-05)]_41 chr1:46347419-46347499 9.68e-04 36_[+4(4.63e-05)]_26_[+1(1.36e-05)]_\ 2 chr1:62416256-62416336 2.05e-01 80 chr9:86198219-86198299 5.72e-04 35_[+5(3.42e-05)]_37 chr5:176102799-176102879 9.05e-04 43_[+5(1.74e-05)]_29 chr2:25014054-25014134 1.27e-03 39_[+4(1.56e-05)]_33 chr18:42964543-42964623 3.16e-03 12_[+3(6.21e-05)]_60 chr3:4985390-4985470 1.88e-04 47_[+5(1.74e-05)]_25 chr10:75913048-75913128 2.11e-03 25_[+4(1.56e-05)]_47 chr17:31264092-31264172 1.15e-04 27_[+3(1.59e-05)]_45 chr3:124546408-124546488 3.77e-03 64_[+2(1.52e-05)]_8 chr15:67066832-67066912 2.06e-05 16_[+3(9.40e-05)]_4_[+4(6.14e-05)]_\ 1_[+2(1.52e-05)]_35 chr1:205641360-205641440 5.26e-04 39_[+2(3.14e-05)]_11_[+3(9.40e-05)]_\ 14 chr16:67138163-67138243 8.47e-03 35_[+5(3.42e-05)]_37 chr1:201315879-201315959 1.93e-02 80 chr19:8412776-8412856 2.24e-03 27_[+2(1.52e-05)]_45 chr9:112580315-112580395 5.01e-04 28_[+4(1.56e-05)]_44 chr1:117636016-117636096 9.22e-03 80 chr10:43872930-43873010 1.65e-03 22_[+4(3.16e-05)]_19_[+2(6.12e-05)]_\ 23 chr20:39707148-39707228 5.44e-03 47_[+2(3.14e-05)]_25 chr12:56551677-56551757 1.39e-03 37_[+5(5.13e-05)]_35 chr4:144777479-144777559 3.29e-02 24_[+1(7.03e-05)]_48 chr2:147840595-147840675 5.98e-01 80 chr21:43378350-43378430 2.14e-04 46_[+2(4.58e-05)]_26 chr6:32829072-32829152 7.51e-03 33_[+2(1.52e-05)]_39 chr1:53647833-53647913 9.43e-02 80 chr3:107140186-107140266 9.81e-04 42_[+3(1.59e-05)]_30 chr21:38311880-38311960 1.83e-01 80 chr1:10115903-10115983 1.66e-02 36_[+1(5.69e-05)]_36 chr19:54770079-54770159 1.54e-04 19_[+3(4.70e-05)]_7_[+2(4.58e-05)]_\ 38 chr19:58918499-58918579 1.81e-03 65_[+2(7.69e-05)]_7 chr8:96249524-96249604 3.14e-02 51_[+4(1.56e-05)]_21 chr1:43599956-43600036 1.89e-02 42_[+2(3.14e-05)]_30 chr12:56216119-56216199 1.04e-02 80 chr10:113897298-11389737 3.58e-03 32_[+4(4.63e-05)]_40 chr12:66539074-66539154 1.45e-02 29_[+1(2.77e-05)]_43 chr1:93903673-93903753 1.98e-01 80 chr2:237471201-237471281 1.99e-03 39_[+1(1.36e-05)]_33 chr12:66663718-66663798 7.79e-05 18_[+2(3.14e-05)]_33_[+1(4.21e-05)]_\ 13 chr9:101553587-101553667 1.84e-05 30_[+3(1.59e-05)]_7_[+2(1.52e-05)]_\ 27 chr1:117385400-117385480 1.40e-02 80 chr11:85753071-85753151 4.08e-03 32_[+1(2.77e-05)]_40 chr1:29451103-29451183 1.82e-03 50_[+2(3.14e-05)]_22 chr20:62066362-62066442 2.57e-04 30_[+1(1.36e-05)]_1_[+5(1.74e-05)]_\ 33 chr8:26499371-26499451 4.59e-01 80 chr10:52334254-52334334 6.44e-03 48_[+2(7.69e-05)]_24 chr11:100801029-10080110 5.02e-03 69_[+3(3.09e-05)]_3 chr4:73161808-73161888 7.06e-01 80 chr3:123443243-123443323 1.70e-03 41_[+1(5.69e-05)]_12_[+3(9.40e-05)]_\ 11 chr11:119350486-11935056 3.36e-04 53_[+5(1.74e-05)]_19 chr22:43176148-43176228 2.84e-02 49_[+2(3.14e-05)]_23 chr19:36001415-36001495 9.47e-04 37_[+3(1.59e-05)]_35 chr8:95370056-95370136 2.95e-02 37_[+1(8.42e-05)]_35 chr3:146356677-146356757 3.20e-04 28_[+4(1.56e-05)]_44 chr17:26075248-26075328 1.63e-03 51_[+5(1.74e-05)]_21 chr17:27206195-27206275 8.60e-02 80 chr4:170232963-170233043 3.96e-03 17_[+3(4.70e-05)]_55 chr3:32939571-32939651 1.53e-03 49_[+3(1.59e-05)]_23 chr5:157375971-157376051 1.06e-01 80 chr1:109224441-109224521 1.79e-02 21_[+1(1.36e-05)]_51 chr2:173892334-173892414 3.77e-02 80 chr10:95048851-95048931 5.80e-01 80 chr3:39232824-39232904 3.06e-03 80 chr2:159359694-159359774 2.09e-02 80 chr19:42095033-42095113 3.64e-03 41_[+2(1.52e-05)]_15_[+5(8.55e-05)]_\ 8 chr19:19296875-19296955 1.60e-01 80 chr14:50320657-50320737 1.23e-04 34_[+1(8.42e-05)]_1_[+5(6.78e-05)]_\ 29 chr12:109825309-10982538 1.69e-02 80 chr5:31317923-31318003 1.99e-02 80 chr18:24229811-24229891 1.18e-03 46_[+3(3.09e-05)]_26 chr22:30615179-30615259 1.15e-02 80 chr6:20400856-20400936 2.68e-04 28_[+1(1.36e-05)]_44 chr11:7716085-7716165 5.66e-01 80 chr2:20490962-20491042 6.63e-07 19_[+3(1.59e-05)]_43_[+5(1.74e-05)]_\ 2 chr12:27856755-27856835 4.33e-03 40_[+2(3.14e-05)]_32 chr1:8065350-8065430 3.87e-01 80 chr14:36723574-36723654 1.25e-02 50_[+2(1.52e-05)]_22 chr1:31846585-31846665 3.91e-03 80 chr12:34276121-34276201 2.07e-02 80 chr5:168301893-168301973 3.66e-01 80 chr5:38265813-38265893 1.03e-04 23_[+5(3.42e-05)]_6_[+1(4.21e-05)]_\ 35 chr12:4386239-4386319 3.91e-04 39_[+3(3.09e-05)]_33 chr17:43935502-43935582 1.77e-02 44_[+1(4.21e-05)]_28 chrX:40883748-40883828 3.54e-02 80 chr1:75699146-75699226 3.64e-02 80 chr7:138759951-138760031 3.63e-03 32_[+4(4.63e-05)]_40 chr2:131678129-131678209 4.88e-04 23_[+2(4.58e-05)]_38_[+1(2.77e-05)]_\ 3 chr6:30910557-30910637 4.12e-02 56_[+1(8.42e-05)]_16 chr1:165742713-165742793 9.82e-02 25_[+2(6.12e-05)]_47 chr17:38324726-38324806 3.75e-02 80 chr6:91763005-91763085 2.93e-02 80 chr22:40349996-40350076 2.16e-05 10_[+1(4.21e-05)]_62 chr1:31584224-31584304 6.95e-03 55_[+1(5.69e-05)]_17 chr20:44658200-44658280 3.32e-02 17_[+2(6.12e-05)]_55 chr17:49713828-49713908 1.06e-02 25_[+1(1.36e-05)]_47 chr11:77491199-77491279 2.08e-01 15_[+1(5.69e-05)]_57 chr5:5340575-5340655 1.20e-02 80 chr14:76027420-76027500 2.25e-04 11_[+1(4.21e-05)]_43_[+3(1.59e-05)]_\ 10 chr19:21439692-21439772 1.40e-03 44_[+3(4.70e-05)]_7_[+2(3.14e-05)]_\ 13 chr4:84674559-84674639 6.47e-04 34_[+3(9.40e-05)]_7_[+2(4.58e-05)]_\ 23 chr7:50880666-50880746 1.66e-02 47_[+1(4.21e-05)]_25 chr3:36974540-36974620 1.14e-02 48_[+1(1.36e-05)]_24 chr14:65308030-65308110 1.80e-03 41_[+2(1.52e-05)]_31 chr22:38379083-38379163 5.46e-04 14_[+3(1.59e-05)]_4_[+1(9.84e-05)]_\ 46 chr1:118077765-118077845 2.89e-03 80 chr1:145030176-145030256 2.24e-01 80 chr2:27906530-27906610 1.54e-03 38_[+4(6.14e-05)]_34 chr20:1456041-1456121 1.29e-01 14_[+1(4.21e-05)]_58 chr10:9253334-9253414 1.16e-01 80 chr10:73722840-73722920 1.63e-01 31_[+2(3.14e-05)]_41 chr20:34472354-34472434 1.05e-03 57_[+1(5.69e-05)]_15 chr2:71147053-71147133 2.89e-02 28_[+2(4.58e-05)]_44 chr9:6846036-6846116 1.65e-03 43_[+4(6.14e-05)]_29 chr1:6266103-6266183 3.05e-02 80 chr8:125452732-125452812 4.90e-04 27_[+1(1.36e-05)]_33_[+3(3.09e-05)]_\ 4 chr14:28141426-28141506 4.53e-03 48_[+4(3.16e-05)]_24 chr4:160303680-160303760 1.66e-02 36_[+1(5.69e-05)]_36 chr8:143735039-143735119 1.56e-04 29_[+1(2.77e-05)]_23_[+5(3.42e-05)]_\ 12 chr17:27071449-27071529 4.58e-02 80 chr10:82423996-82424076 1.63e-03 80 chr2:134537848-134537928 1.16e-01 80 chr2:37012497-37012577 4.83e-04 7_[+3(1.59e-05)]_65 chr1:51186327-51186407 8.82e-02 80 chr1:223897523-223897603 4.27e-02 80 chr7:72300699-72300779 3.44e-03 38_[+3(3.09e-05)]_34 chr4:184020118-184020198 5.23e-02 68_[+2(3.14e-05)]_4 chr1:186181840-186181920 2.05e-02 43_[+2(4.58e-05)]_29 chr1:193080869-193080949 9.66e-03 26_[+2(6.12e-05)]_46 chr9:102584048-102584128 1.84e-01 44_[+1(5.69e-05)]_28 chr16:8223233-8223313 2.14e-01 80 chr22:22069270-22069350 3.68e-02 24_[+2(4.58e-05)]_48 chr3:122799829-122799909 8.40e-01 80 chr5:72792922-72793002 1.51e-01 80 chr19:10138483-10138563 2.39e-03 24_[+1(2.77e-05)]_48 chr3:67164390-67164470 3.93e-02 80 chr2:159314669-159314749 4.19e-04 32_[+2(3.14e-05)]_1_[+2(3.14e-05)]_\ 31 chr13:20558981-20559061 5.82e-03 49_[+5(6.78e-05)]_23 chr5:142093103-142093183 9.88e-05 4_[+5(6.78e-05)]_50_[+1(5.69e-05)]_\ 10 chr15:49148190-49148270 9.81e-04 80 chr8:71227979-71228059 9.29e-03 35_[+1(1.36e-05)]_37 chr15:91459574-91459654 8.87e-02 33_[+1(8.42e-05)]_39 chr13:21635671-21635751 1.02e-02 38_[+1(5.69e-05)]_34 chr2:216673838-216673918 2.65e-03 80 chr15:66220050-66220130 1.37e-03 36_[+4(3.16e-05)]_1_[+2(4.58e-05)]_\ 27 chr17:33760731-33760811 2.39e-01 56_[+2(7.69e-05)]_16 chr19:1265475-1265555 1.44e-03 71_[+1(1.36e-05)]_1 chr11:75091848-75091928 9.85e-02 80 chr14:23039396-23039476 1.02e-01 80 chr4:87980012-87980092 1.11e-04 44_[+2(3.14e-05)]_28 chr2:220354996-220355076 1.48e-02 80 chr3:138542747-138542827 9.97e-03 80 chr20:32497439-32497519 6.60e-02 80 chr19:8647251-8647331 1.16e-02 63_[+1(5.69e-05)]_9 chr6:47015328-47015408 5.20e-01 80 chr3:193915316-193915396 2.41e-02 56_[+1(2.77e-05)]_16 chr12:58240840-58240920 1.31e-01 40_[+1(4.21e-05)]_32 chr1:152505947-152506027 2.38e-04 45_[+3(6.21e-05)]_27 chr2:98853547-98853627 5.81e-02 54_[+1(5.69e-05)]_18 chr3:149111295-149111375 4.25e-01 80 chr3:47462644-47462724 3.29e-02 55_[+5(5.13e-05)]_17 chr7:66459841-66459921 2.57e-03 80 chr4:140149021-140149101 5.53e-02 44_[+2(3.14e-05)]_28 chr17:43909653-43909733 1.79e-03 18_[+4(3.16e-05)]_54 chr15:28472664-28472744 3.18e-03 29_[+2(7.69e-05)]_43 chr14:44631510-44631590 8.87e-01 80 chr20:42305839-42305919 3.06e-02 66_[+2(4.58e-05)]_6 chr2:26567594-26567674 6.01e-02 67_[+1(5.69e-05)]_5 chr6:130069537-130069617 4.22e-02 80 chr7:73694104-73694184 7.98e-03 39_[+1(7.03e-05)]_33 chr10:333927-334007 8.06e-03 39_[+2(4.58e-05)]_33 chr12:9950731-9950811 4.74e-03 22_[+1(2.77e-05)]_50 chr7:105817337-105817417 4.65e-02 27_[+2(6.12e-05)]_45 chr7:151384859-151384939 4.90e-03 17_[+2(4.58e-05)]_55 chr10:123811303-12381138 1.76e-03 27_[+4(3.16e-05)]_45 chr1:38385114-38385194 1.68e-03 33_[+5(5.13e-05)]_3_[+1(4.21e-05)]_\ 28 chr6:157939853-157939933 2.64e-01 80 chr6:30500383-30500463 2.44e-03 19_[+1(4.21e-05)]_53 chr7:156178911-156178991 4.26e-02 54_[+1(5.69e-05)]_18 chr18:3650049-3650129 3.11e-02 41_[+2(6.12e-05)]_31 chr3:42078034-42078114 1.26e-02 54_[+1(8.42e-05)]_18 chr1:11654403-11654483 3.19e-04 1_[+3(4.70e-05)]_7_[+2(1.52e-05)]_\ 56 chr14:21081684-21081764 9.00e-02 80 chr10:92681033-92681113 4.38e-02 80 chr17:55320562-55320642 3.14e-03 21_[+2(4.58e-05)]_51 chr16:3081763-3081843 5.75e-03 80 chr1:173572557-173572637 3.51e-03 36_[+1(1.36e-05)]_36 chr1:24045066-24045146 2.94e-03 54_[+1(4.21e-05)]_1_[+5(8.55e-05)]_\ 9 chrX:153599829-153599909 7.41e-03 22_[+2(6.12e-05)]_50 chrX:133671494-133671574 4.69e-03 62_[+2(4.58e-05)]_10 chr16:56998915-56998995 2.46e-02 50_[+1(5.69e-05)]_22 chr1:201975256-201975336 1.31e-03 45_[+5(6.78e-05)]_27 chr7:93251857-93251937 1.13e-02 32_[+5(1.74e-05)]_40 chr17:8057662-8057742 7.86e-02 80 chr9:87548003-87548083 6.27e-03 26_[+1(4.21e-05)]_46 chr1:153669820-153669900 2.18e-03 54_[+2(3.14e-05)]_18 chr6:781359-781439 1.48e-01 80 chr11:58537721-58537801 6.84e-02 45_[+1(1.36e-05)]_27 chr7:39504711-39504791 2.60e-04 31_[+3(1.59e-05)]_41 chr11:109817080-10981716 1.22e-03 72_[+1(2.77e-05)] chr3:42696353-42696433 2.89e-02 28_[+1(7.03e-05)]_44 chr12:123344941-12334502 6.55e-05 39_[+5(8.55e-05)]_33 chr17:29285299-29285379 8.62e-01 80 chr18:20143234-20143314 1.21e-02 36_[+4(4.63e-05)]_36 chr3:46977186-46977266 6.07e-03 37_[+2(3.14e-05)]_35 chr17:42664851-42664931 2.51e-01 80 chr12:52288870-52288950 2.80e-02 46_[+5(3.42e-05)]_26 chr16:85049553-85049633 1.94e-02 64_[+1(9.84e-05)]_8 chr18:12934619-12934699 7.18e-04 60_[+2(3.14e-05)]_12 chr12:96883259-96883339 1.35e-03 12_[+3(6.21e-05)]_60 chr3:150089762-150089842 5.05e-03 80 chr12:118472782-11847286 2.42e-01 80 chr1:101251446-101251526 1.45e-01 32_[+2(3.14e-05)]_40 chr14:77509867-77509947 8.60e-02 32_[+1(7.03e-05)]_40 chr6:161827806-161827886 4.39e-02 80 chr15:42272225-42272305 6.85e-04 33_[+2(4.58e-05)]_39 chr6:11263807-11263887 3.10e-02 55_[+1(1.36e-05)]_17 chr1:173391818-173391898 8.80e-01 80 chr1:9360272-9360352 7.80e-04 61_[+1(1.36e-05)]_11 chr9:102796283-102796363 4.98e-01 80 chr1:16375359-16375439 5.53e-02 53_[+1(5.69e-05)]_19 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************