******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TCF12.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr14:88491087-88491167 1.0000 80 chr7:7082286-7082366 1.0000 80 chr3:32115896-32115976 1.0000 80 chr4:144940566-144940646 1.0000 80 chr17:62919227-62919307 1.0000 80 chr19:4328478-4328558 1.0000 80 chr14:35122453-35122533 1.0000 80 chr8:38068322-38068402 1.0000 80 chr2:240008156-240008236 1.0000 80 chr20:9129839-9129919 1.0000 80 chr19:381061-381141 1.0000 80 chr6:160992396-160992476 1.0000 80 chr1:25611719-25611799 1.0000 80 chr7:5123120-5123200 1.0000 80 chr4:103277039-103277119 1.0000 80 chr1:211395920-211396000 1.0000 80 chr13:44972142-44972222 1.0000 80 chr11:62136571-62136651 1.0000 80 chr11:62645222-62645302 1.0000 80 chr14:23366711-23366791 1.0000 80 chr4:25052511-25052591 1.0000 80 chr6:80314390-80314470 1.0000 80 chr2:42587254-42587334 1.0000 80 chr7:24903975-24904055 1.0000 80 chr1:95100704-95100784 1.0000 80 chr1:160919144-160919224 1.0000 80 chr1:6489892-6489972 1.0000 80 chr19:516721-516801 1.0000 80 chr17:19913652-19913732 1.0000 80 chr10:47619240-47619320 1.0000 80 chr6:112126190-112126270 1.0000 80 chr5:134528287-134528367 1.0000 80 chr4:144826776-144826856 1.0000 80 chr7:99659268-99659348 1.0000 80 chr6:159303106-159303186 1.0000 80 chr9:125209217-125209297 1.0000 80 chr9:136159282-136159362 1.0000 80 chr11:124537650-12453773 1.0000 80 chr14:100038931-10003901 1.0000 80 chr19:14502099-14502179 1.0000 80 chr1:207020988-207021068 1.0000 80 chr19:35411458-35411538 1.0000 80 chr17:72329119-72329199 1.0000 80 chr11:43974075-43974155 1.0000 80 chr9:69491642-69491722 1.0000 80 chr1:25606338-25606418 1.0000 80 chr15:75987048-75987128 1.0000 80 chr16:8688304-8688384 1.0000 80 chr9:130188247-130188327 1.0000 80 chr17:62971016-62971096 1.0000 80 chrX:134996749-134996829 1.0000 80 chr13:19398961-19399041 1.0000 80 chr14:20645714-20645794 1.0000 80 chr15:39432304-39432384 1.0000 80 chr8:37949368-37949448 1.0000 80 chr4:1884786-1884866 1.0000 80 chr22:32022708-32022788 1.0000 80 chr10:43140678-43140758 1.0000 80 chr8:37939618-37939698 1.0000 80 chr11:2000372-2000452 1.0000 80 chr16:10591149-10591229 1.0000 80 chr16:23678666-23678746 1.0000 80 chr1:70005902-70005982 1.0000 80 chr16:21272972-21273052 1.0000 80 chr13:50420834-50420914 1.0000 80 chr12:125369560-12536964 1.0000 80 chr7:102082193-102082273 1.0000 80 chr8:101776300-101776380 1.0000 80 chr3:57584946-57585026 1.0000 80 chr20:32007082-32007162 1.0000 80 chr10:126406630-12640671 1.0000 80 chr2:174939652-174939732 1.0000 80 chr7:104607709-104607789 1.0000 80 chr6:164767861-164767941 1.0000 80 chr1:16380761-16380841 1.0000 80 chr14:76006324-76006404 1.0000 80 chr4:145061887-145061967 1.0000 80 chr1:65487630-65487710 1.0000 80 chr3:14162498-14162578 1.0000 80 chr3:177148573-177148653 1.0000 80 chr2:208825014-208825094 1.0000 80 chr1:243269314-243269394 1.0000 80 chr8:93107687-93107767 1.0000 80 chr7:77502866-77502946 1.0000 80 chr13:95923475-95923555 1.0000 80 chr9:4862938-4863018 1.0000 80 chr15:74902920-74903000 1.0000 80 chr21:46780263-46780343 1.0000 80 chr2:73128704-73128784 1.0000 80 chr1:25739902-25739982 1.0000 80 chr5:32288425-32288505 1.0000 80 chr9:127727082-127727162 1.0000 80 chr10:134956861-13495694 1.0000 80 chr8:49379271-49379351 1.0000 80 chr20:37192591-37192671 1.0000 80 chr3:6582816-6582896 1.0000 80 chr5:176075745-176075825 1.0000 80 chr14:24725573-24725653 1.0000 80 chr10:13747880-13747960 1.0000 80 chr11:34258317-34258397 1.0000 80 chr1:228366652-228366732 1.0000 80 chr22:30348250-30348330 1.0000 80 chr4:69730317-69730397 1.0000 80 chr6:10750103-10750183 1.0000 80 chr18:968399-968479 1.0000 80 chr6:150881285-150881365 1.0000 80 chr17:26854451-26854531 1.0000 80 chr18:77361346-77361426 1.0000 80 chr5:29796338-29796418 1.0000 80 chr1:109677200-109677280 1.0000 80 chr5:131987935-131988015 1.0000 80 chr2:239331048-239331128 1.0000 80 chr16:25783258-25783338 1.0000 80 chr6:34274092-34274172 1.0000 80 chr18:67693002-67693082 1.0000 80 chr16:21548249-21548329 1.0000 80 chr3:125152086-125152166 1.0000 80 chr3:196715537-196715617 1.0000 80 chrX:47543019-47543099 1.0000 80 chr11:71416616-71416696 1.0000 80 chr7:39849956-39850036 1.0000 80 chr6:38764353-38764433 1.0000 80 chr1:207809074-207809154 1.0000 80 chr6:27741814-27741894 1.0000 80 chr1:228608954-228609034 1.0000 80 chr12:32207226-32207306 1.0000 80 chr15:31270652-31270732 1.0000 80 chr4:145000055-145000135 1.0000 80 chr3:128773652-128773732 1.0000 80 chr2:86416675-86416755 1.0000 80 chr20:35783245-35783325 1.0000 80 chr14:36733984-36734064 1.0000 80 chr13:25926496-25926576 1.0000 80 chr1:28851658-28851738 1.0000 80 chr4:81174849-81174929 1.0000 80 chr1:151687996-151688076 1.0000 80 chr2:58916104-58916184 1.0000 80 chr3:156178157-156178237 1.0000 80 chr2:173465560-173465640 1.0000 80 chr1:95581319-95581399 1.0000 80 chr12:28345231-28345311 1.0000 80 chr5:178110917-178110997 1.0000 80 chr12:27170367-27170447 1.0000 80 chr2:169990981-169991061 1.0000 80 chr14:102144511-10214459 1.0000 80 chr18:55444154-55444234 1.0000 80 chr9:14395860-14395940 1.0000 80 chr3:98302748-98302828 1.0000 80 chr5:168240749-168240829 1.0000 80 chr3:179093036-179093116 1.0000 80 chr16:24719244-24719324 1.0000 80 chr12:23052373-23052453 1.0000 80 chr4:109035775-109035855 1.0000 80 chr20:3890845-3890925 1.0000 80 chr22:35608140-35608220 1.0000 80 chr9:131355489-131355569 1.0000 80 chr22:36764683-36764763 1.0000 80 chr15:88214705-88214785 1.0000 80 chr7:64405514-64405594 1.0000 80 chrX:55054617-55054697 1.0000 80 chr1:156430438-156430518 1.0000 80 chrX:114557033-114557113 1.0000 80 chr18:43733357-43733437 1.0000 80 chr2:112191630-112191710 1.0000 80 chr7:139935086-139935166 1.0000 80 chr16:10437127-10437207 1.0000 80 chr12:108879362-10887944 1.0000 80 chr11:6584656-6584736 1.0000 80 chr10:127293919-12729399 1.0000 80 chr2:128300682-128300762 1.0000 80 chr20:33780335-33780415 1.0000 80 chr15:69284217-69284297 1.0000 80 chrX:40403735-40403815 1.0000 80 chr21:40357698-40357778 1.0000 80 chrX:79767992-79768072 1.0000 80 chr19:6682888-6682968 1.0000 80 chr5:157038183-157038263 1.0000 80 chr5:139990824-139990904 1.0000 80 chr16:9171927-9172007 1.0000 80 chr4:160116727-160116807 1.0000 80 chr6:74238819-74238899 1.0000 80 chr3:141567990-141568070 1.0000 80 chr6:16263860-16263940 1.0000 80 chr1:27118200-27118280 1.0000 80 chr5:70681215-70681295 1.0000 80 chr22:40586636-40586716 1.0000 80 chrX:107801622-107801702 1.0000 80 chr4:154449974-154450054 1.0000 80 chr11:75301072-75301152 1.0000 80 chr2:209436645-209436725 1.0000 80 chr7:128790236-128790316 1.0000 80 chr1:35602538-35602618 1.0000 80 chr1:35309372-35309452 1.0000 80 chr7:90929381-90929461 1.0000 80 chr10:28783483-28783563 1.0000 80 chr1:207693581-207693661 1.0000 80 chr17:4152921-4153001 1.0000 80 chr11:5181581-5181661 1.0000 80 chr14:30119972-30120052 1.0000 80 chr1:224058428-224058508 1.0000 80 chr5:158555240-158555320 1.0000 80 chr10:75004834-75004914 1.0000 80 chr7:99432959-99433039 1.0000 80 chr14:70704601-70704681 1.0000 80 chr6:44439455-44439535 1.0000 80 chr13:39573043-39573123 1.0000 80 chrX:55041564-55041644 1.0000 80 chr15:63402282-63402362 1.0000 80 chr17:6897205-6897285 1.0000 80 chr17:52938596-52938676 1.0000 80 chr2:17899105-17899185 1.0000 80 chr7:105659263-105659343 1.0000 80 chr22:32291961-32292041 1.0000 80 chr8:73046748-73046828 1.0000 80 chr13:99628356-99628436 1.0000 80 chr4:140364987-140365067 1.0000 80 chr17:14064902-14064982 1.0000 80 chr1:191793075-191793155 1.0000 80 chr22:43403778-43403858 1.0000 80 chr21:47740486-47740566 1.0000 80 chr20:46153258-46153338 1.0000 80 chr12:32201001-32201081 1.0000 80 chr8:125503809-125503889 1.0000 80 chr16:15615927-15616007 1.0000 80 chr4:119495637-119495717 1.0000 80 chr5:16418762-16418842 1.0000 80 chrX:55143171-55143251 1.0000 80 chrX:153119177-153119257 1.0000 80 chr15:40189627-40189707 1.0000 80 chr17:11876224-11876304 1.0000 80 chr17:57762494-57762574 1.0000 80 chr5:657866-657946 1.0000 80 chr20:37576734-37576814 1.0000 80 chr8:98790783-98790863 1.0000 80 chr15:35459069-35459149 1.0000 80 chr10:14223346-14223426 1.0000 80 chr2:172487780-172487860 1.0000 80 chr1:61514702-61514782 1.0000 80 chr2:6987583-6987663 1.0000 80 chr7:92515498-92515578 1.0000 80 chr20:20927152-20927232 1.0000 80 chr4:111170120-111170200 1.0000 80 chr8:144016040-144016120 1.0000 80 chr5:176421976-176422056 1.0000 80 chr18:75034043-75034123 1.0000 80 chr1:57684539-57684619 1.0000 80 chr17:57779851-57779931 1.0000 80 chr15:93160919-93160999 1.0000 80 chr7:99321010-99321090 1.0000 80 chr9:100987550-100987630 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TCF12/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TCF12.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.243 G 0.253 T 0.253 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.243 G 0.253 T 0.253 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGCTGSN MEME-1 width = 8 sites = 141 llr = 942 E-value = 1.9e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGSN MEME-1 Description -------------------------------------------------------------------------------- Simplified A :8:22::2 pos.-specific C a::8::53 probability G ::8::a32 matrix T :22:8:23 bits 2.0 * * 1.8 * * 1.6 * * 1.4 * * * Relative 1.2 ****** Entropy 1.0 ****** (9.6 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel CAGCTGCC consensus T A GT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGSN MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:140364987-140365067 56 1.41e-05 tcccctgagg cagctgcc aggcaagata chr14:70704601-70704681 10 1.41e-05 gcagactca cagctgcc agaagatatg chr4:81174849-81174929 66 1.41e-05 CTCACCCAAG CAGCTGCC AGTGCTG chr13:95923475-95923555 30 1.41e-05 AATACAGAGA CAGCTGCC GACGGATTAC chr7:77502866-77502946 14 1.41e-05 tcttgcctca cagctgcc tcaggggagg chr17:72329119-72329199 72 1.41e-05 TGACAGATGT CAGCTGCC C chr10:14223346-14223426 6 4.35e-05 ACCGA CAGCTGCT GCAGCCCCAG chr7:128790236-128790316 36 4.35e-05 GAACCACAAG CAGCTGCT TCCCATCTCC chr11:75301072-75301152 18 4.35e-05 ATATGGAACA CAGCTGCT CTGGCCAGAT chr15:88214705-88214785 60 4.35e-05 ATCCTGAACA CAGCTGCT GCATTTATCT chr1:151687996-151688076 25 4.35e-05 CACCCCTACC CAGCTGCT TATCTCCCAA chr1:25739902-25739982 24 4.35e-05 GCACTCACAT CAGCTGCT GGTTTGATAA chr10:126406630-12640671 20 4.35e-05 CCTTGGAACA CAGCTGCG AGGGCAGTGA chr8:37939618-37939698 7 4.35e-05 actttg cagctgcg ctagggaggt chr8:37949368-37949448 7 4.35e-05 actttg cagctgcg ctagggaggt chr14:100038931-10003901 34 4.35e-05 CCAGGGACGA CAGCTGCT TATCATCCAA chr7:99659268-99659348 1 4.35e-05 . CAGCTGCT GAAGCTCTGA chr17:14064902-14064982 38 5.82e-05 gggtaacatc cagctggc tggaggctgg chr22:30348250-30348330 30 5.82e-05 CTGTGCCCCA CAGCTGGC AGAGTAATGC chr5:657866-657946 40 7.27e-05 GTGACCTGGG CAGCTGCA TCACAGGATT chr8:73046748-73046828 66 7.27e-05 ttcaagaatg cagctgca gagtatt chr14:30119972-30120052 46 7.27e-05 tgtgaccttg cagctgca cagcaagaag chr18:43733357-43733437 42 7.27e-05 AAGCAGGTGT CAGCTGCA GCCTGATGCA chrX:114557033-114557113 67 7.27e-05 gataggccca cagctgca cagata chr12:27170367-27170447 1 7.27e-05 . cagctgca ggcatacccc chr2:173465560-173465640 68 7.27e-05 atacatcttg cagctgca ggcat chr2:239331048-239331128 46 7.27e-05 GCTCCTCCGG CAGCTGCA GTCAGGTGAG chr3:14162498-14162578 43 7.27e-05 catctttctg cagctgca ggcatatccc chr7:102082193-102082273 1 7.27e-05 . cagctgCA GTGGGAAGCA chr10:43140678-43140758 50 7.27e-05 ctccctagca cagctgca aagttacaag chr14:20645714-20645794 56 7.27e-05 tgtgaccttg cagctgca cagcaagaaa chr20:37576734-37576814 45 1.03e-04 CTGTGTATAG CAGCTGGT TATCAAAGCC chr22:40586636-40586716 64 1.03e-04 ATAATGCTAT CAGCTGGT TGTGGGAGT chr1:228366652-228366732 73 1.03e-04 cgcgcacacc cagctggg chr9:127727082-127727162 29 1.03e-04 gttgtactgg cagctggt gtttatcttt chr1:95100704-95100784 16 1.03e-04 GAGCGGGGAG CAGCTGGT TATCATGAAC chr1:35309372-35309452 33 1.18e-04 TCTCTGGCTC CAGCTGGA CTCAGGAAAG chr22:35608140-35608220 55 1.18e-04 ATGTCCTCAG CAGCTGGA AGGCAGCAAA chr5:168240749-168240829 8 1.18e-04 CTCCAGA CAGCTGGA TTTAATTCAA chr7:104607709-104607789 66 1.18e-04 GCAAAGTAAG CAGCTGGA ATGACTG chrX:153119177-153119257 1 1.33e-04 . cagctgtc tctgctggaa chr22:36764683-36764763 67 1.33e-04 TTACCCCTCC CAGCTGTC TATATC chr15:63402282-63402362 39 1.47e-04 TCAGGTTCCT CAGCAGCC TTTGCTCATA chr1:224058428-224058508 41 1.47e-04 gctatgccca cagcagcc cctcccccca chr17:4152921-4153001 47 1.47e-04 TAATCCACAA CAGCAGCC ACTGCATCTT chr4:109035775-109035855 68 1.47e-04 ATACTGTGAG CAGCAGCC AAAGA chr2:58916104-58916184 10 1.47e-04 aaagaaagg cagcagcc ccaggcaggg chr20:9129839-9129919 32 1.47e-04 cttttctcca cagcagcc tgatctccac chr20:20927152-20927232 37 1.92e-04 GGGCTCAAAA CAGCTGTG AACAATTTCC chr2:17899105-17899185 3 1.92e-04 gc cagctgtg gtgacagatg chr7:90929381-90929461 32 1.92e-04 acactcattc catctgcc tctcatctgc chr7:64405514-64405594 40 1.92e-04 ccccacttat cagctgtg aacatggggc chr9:131355489-131355569 47 1.92e-04 CTTCCATGTG CAGCTGTG TGTTCAGAGT chr15:74902920-74903000 66 1.92e-04 CGACAGGCTC CAGCTGTG CATCTCT chr15:39432304-39432384 25 1.92e-04 GATAAGAGCA CAGCTGTG GGAAAGCCAG chr1:57684539-57684619 17 2.21e-04 TGAGGACGGC CAGCAGCG GTGAGGGGAG chr11:2000372-2000452 26 2.21e-04 TCCCCGTTAT CAGCAGCG AGCCTGCCTG chr1:25606338-25606418 53 2.21e-04 CTTATCAAAC CAGCAGCT GATGTGAGTG chr10:47619240-47619320 28 2.21e-04 CGTTTCTTAT CAGCAGCG TCCAGAGGCT chr3:156178157-156178237 26 2.94e-04 AACAATGCTT CATCTGCT ATCCTTGAGA chr14:36733984-36734064 29 2.94e-04 atctttcatc ctgctgcc tgcgatacag chr1:207809074-207809154 44 2.94e-04 acagaggtcc ctgctgcc ttctgcagtg chr3:6582816-6582896 28 2.94e-04 ctgacagggg ctgctgcc tttttttcag chr2:73128704-73128784 35 2.94e-04 GCCTGGAGAC CATCTGCT GTAGAGGGGA chr15:75987048-75987128 67 2.94e-04 CCCTGCAGAC CATCTGCG CGGGGG chr5:16418762-16418842 40 3.38e-04 ACTCAGAAGC CAGATGCC ATTTAATGTG chr1:211395920-211396000 30 3.38e-04 gatcaggaga cagatgcc ttcctcttat chr7:92515498-92515578 65 4.12e-04 aggatcatgt catctgca aacaaaga chr15:35459069-35459149 22 4.12e-04 CATTCTCAAG CAGCAGGG AAAAGGAGCT chrX:55041564-55041644 51 4.12e-04 GCTGATAATT CTGCTGCT TTGAGATAGG chr7:99432959-99433039 30 4.12e-04 atgtttagga ctgctgct gataagcctc chr4:154449974-154450054 33 4.12e-04 TCAAGAGAAA CATCTGCA ATGGTTTCTT chr12:108879362-10887944 41 4.12e-04 ataagacagc catctgca aaaccaagga chr12:32207226-32207306 2 4.12e-04 a catctgca cctgccacca chrX:47543019-47543099 61 4.12e-04 aggtggtcac cagcaggt gattgtataa chr1:109677200-109677280 56 4.12e-04 GCTGCTGCAC CTGCTGCT TTTGCCGTTT chr17:26854451-26854531 44 4.12e-04 CAGATAAGGA CAGCAGGG CCCTGAACCT chr9:100987550-100987630 18 4.88e-04 GCCAATCAGC CATCTGGT GCTATCTCCT chr2:172487780-172487860 10 4.88e-04 gattgcagc catctggg cgccatagtg chr8:125503809-125503889 64 4.88e-04 TGTACCTATT CATCTGGT GGATGGata chrX:40403735-40403815 65 4.88e-04 GATATGGTTC CATCTGGT TTTGCTGG chr16:10437127-10437207 6 4.88e-04 gcagc catctggg caccacagtg chr3:128773652-128773732 43 4.88e-04 cagttagtca catctggt ggaactgcaa chr8:49379271-49379351 58 4.88e-04 accctctggg cagatgcg cacttaacca chr8:101776300-101776380 71 4.88e-04 CTCCTGAAGC CATCTGGG GG chr7:24903975-24904055 33 4.88e-04 ttattccata catctggg ttgagcctga chr2:42587254-42587334 6 4.88e-04 CACCT CATCTGGG CCCCTCACTA chr4:25052511-25052591 73 4.88e-04 ACAGTAAGTC CAGATGCG chr15:69284217-69284297 25 5.33e-04 ctgtgcggtc cagatggc tgttatctag chr12:125369560-12536964 3 5.33e-04 cc cagatggc tggccccgcc chr1:6489892-6489972 30 5.33e-04 ACTCAGTGGC CAGATGGC CTGGACTGAT chr12:32201001-32201081 64 5.94e-04 tacagagaaa ctgctggt tttcaagat chr2:209436645-209436725 7 5.94e-04 gagtgt ctgctggg gacttcttta chr21:46780263-46780343 23 5.94e-04 GTCTGGTTAT CTGCTGGT AATCCTTAGG chr17:62919227-62919307 59 5.94e-04 CCTCCTTCTG CATCTGGA GTCTAGAAGG chr7:139935086-139935166 47 6.40e-04 AGTTGACAAC CAGCAGTC TCTGCTAGAT chr4:145000055-145000135 32 6.40e-04 agatactctc cagatggg agagagtttc chr5:29796338-29796418 67 6.40e-04 CCAGACACTG CAGATGGT GACTCT chr9:130188247-130188327 24 6.40e-04 gaaagcagag cagatggg tcgtcatctt chr14:35122453-35122533 27 6.40e-04 cattaccaaa cagatggg agcattctga chr3:32115896-32115976 56 6.40e-04 cattaccaaa cagatggg agcattccaa chr21:40357698-40357778 33 6.70e-04 CCTCACCCAA CATCTGTC CTGCGGCGGG chr9:69491642-69491722 41 6.70e-04 aagaggaagg catctgtc tcctgctgtc chr5:32288425-32288505 6 7.30e-04 actgc catcagcc tttccacctt chr9:4862938-4863018 33 7.30e-04 GAGTTAACGG CAGCAGTT GTTCAATGGG chr6:164767861-164767941 45 7.30e-04 TTGGATAAGA CAGATGGA AGGTTGCTTA chr6:80314390-80314470 64 7.30e-04 cactggtttc cagatgga gagaaggca chr1:228608954-228609034 5 7.75e-04 ctcg catctgtg cctgccacca chr16:21548249-21548329 56 7.75e-04 CATGAGGCCA CTGCTGTC ACACTTGGAA chr14:24725573-24725653 70 7.75e-04 GGATGTCCAC CATCTGTG ACC chr1:16380761-16380841 37 7.75e-04 TCACTCAAGG CTGCTGTC AGCCCATGTG chr16:23678666-23678746 72 7.75e-04 AACACAGAAT CATCTGTT C chr6:159303106-159303186 39 7.75e-04 ggaatgctcc catctgtt tggttatgtg chr4:160116727-160116807 59 8.48e-04 cattgtgatt ctgcagcc atagctctta chr4:145061887-145061967 24 8.48e-04 CTGCGGCCAT CATCAGCT GATAGGCAGG chr4:144826776-144826856 7 8.48e-04 GGCCAT CATCAGCT GATAGGCAGG chr19:516721-516801 23 8.48e-04 ttttgtgacc ctgcagcc gtgctaggga chr13:44972142-44972222 73 8.48e-04 TAGCACAGAG CAGATGTC chr17:57779851-57779931 24 9.38e-04 cactcacctc ctgctgtg cggcccagtt chrX:107801622-107801702 4 9.38e-04 TCA CATCAGGC AACCCTACTG chr2:208825014-208825094 27 9.38e-04 AGATTTCTGT CTGCTGTG GTAAGAGGAC chr8:144016040-144016120 36 1.03e-03 AGGCTCAAGC CAGATGTG CTGCACCGTG chr5:139990824-139990904 34 1.03e-03 atacatcttc ctgcagct acaggcatac chr11:34258317-34258397 66 1.03e-03 CAGACAGCCT CTGCAGCT TGGGTGT chr22:43403778-43403858 31 1.15e-03 GATTCCAGAG CTGCAGGC AGAGCCAGGG chr1:27118200-27118280 31 1.15e-03 ACGTGTCCAC CTGCAGGC TAGGGCTGTT chr3:141567990-141568070 61 1.15e-03 GCAGCTTAGG CAGAAGCT GATAaggaga chr12:23052373-23052453 65 1.15e-03 ctatctgtgc ctgcaggc tgttcttt chr8:93107687-93107767 61 1.15e-03 AGCCAACGTG CATCAGGG TGATTACAAT chr17:19913652-19913732 7 1.15e-03 TAGGAG CTGCAGGC AGCAGATAAA chr16:24719244-24719324 28 1.25e-03 ctcaactgct cagaaggc tgaggtggga chr5:131987935-131988015 5 1.25e-03 gtgg ctgatgcc tgtgattcca chr13:19398961-19399041 68 1.25e-03 ctggacatgc ctgcagca gatca chr17:62971016-62971096 25 1.25e-03 AATATAAAAC CAGATGTA CCTTCCAGTG chr19:381061-381141 41 1.25e-03 TGGTGATGAG CAGATGTA GGAGGTGGAG chrX:55143171-55143251 67 1.34e-03 tcctgcacgg ctgcaggg tcgcaa chr20:46153258-46153338 65 1.45e-03 ttttaaggag cagaaggt ttaataga chr13:99628356-99628436 23 1.45e-03 TAAGAAAAAA CTTCTGGT ATCACTGTTG chr16:21272972-21273052 45 1.45e-03 AAAATGAGGC CAGAAGGT GGGCAACACA chr11:6584656-6584736 56 1.57e-03 GTCCGGGTAA CTGATGCA ATGTGTGACT chr6:112126190-112126270 39 1.78e-03 TTTCAGCCTG CTTCAGCC TTTCTAACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGSN MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:140364987-140365067 1.4e-05 55_[+1]_17 chr14:70704601-70704681 1.4e-05 9_[+1]_63 chr4:81174849-81174929 1.4e-05 65_[+1]_7 chr13:95923475-95923555 1.4e-05 29_[+1]_43 chr7:77502866-77502946 1.4e-05 13_[+1]_59 chr17:72329119-72329199 1.4e-05 71_[+1]_1 chr10:14223346-14223426 4.4e-05 5_[+1]_67 chr7:128790236-128790316 4.4e-05 35_[+1]_37 chr11:75301072-75301152 4.4e-05 17_[+1]_55 chr15:88214705-88214785 4.4e-05 59_[+1]_13 chr1:151687996-151688076 4.4e-05 24_[+1]_48 chr1:25739902-25739982 4.4e-05 23_[+1]_49 chr10:126406630-12640671 4.4e-05 19_[+1]_53 chr8:37939618-37939698 4.4e-05 6_[+1]_66 chr8:37949368-37949448 4.4e-05 6_[+1]_66 chr14:100038931-10003901 4.4e-05 33_[+1]_39 chr7:99659268-99659348 4.4e-05 [+1]_72 chr17:14064902-14064982 5.8e-05 37_[+1]_35 chr22:30348250-30348330 5.8e-05 29_[+1]_43 chr5:657866-657946 7.3e-05 39_[+1]_33 chr8:73046748-73046828 7.3e-05 65_[+1]_7 chr14:30119972-30120052 7.3e-05 45_[+1]_27 chr18:43733357-43733437 7.3e-05 41_[+1]_31 chrX:114557033-114557113 7.3e-05 66_[+1]_6 chr12:27170367-27170447 7.3e-05 [+1]_72 chr2:173465560-173465640 7.3e-05 67_[+1]_5 chr2:239331048-239331128 7.3e-05 45_[+1]_27 chr3:14162498-14162578 7.3e-05 42_[+1]_30 chr7:102082193-102082273 7.3e-05 [+1]_72 chr10:43140678-43140758 7.3e-05 49_[+1]_23 chr14:20645714-20645794 7.3e-05 55_[+1]_17 chr20:37576734-37576814 0.0001 44_[+1]_28 chr22:40586636-40586716 0.0001 63_[+1]_9 chr1:228366652-228366732 0.0001 72_[+1] chr9:127727082-127727162 0.0001 28_[+1]_44 chr1:95100704-95100784 0.0001 15_[+1]_57 chr1:35309372-35309452 0.00012 32_[+1]_40 chr22:35608140-35608220 0.00012 54_[+1]_18 chr5:168240749-168240829 0.00012 7_[+1]_65 chr7:104607709-104607789 0.00012 65_[+1]_7 chrX:153119177-153119257 0.00013 [+1]_72 chr22:36764683-36764763 0.00013 66_[+1]_6 chr15:63402282-63402362 0.00015 38_[+1]_34 chr1:224058428-224058508 0.00015 40_[+1]_32 chr17:4152921-4153001 0.00015 46_[+1]_26 chr4:109035775-109035855 0.00015 67_[+1]_5 chr2:58916104-58916184 0.00015 9_[+1]_63 chr20:9129839-9129919 0.00015 31_[+1]_41 chr20:20927152-20927232 0.00019 36_[+1]_36 chr2:17899105-17899185 0.00019 2_[+1]_70 chr7:90929381-90929461 0.00019 31_[+1]_41 chr7:64405514-64405594 0.00019 39_[+1]_33 chr9:131355489-131355569 0.00019 46_[+1]_26 chr15:74902920-74903000 0.00019 65_[+1]_7 chr15:39432304-39432384 0.00019 24_[+1]_48 chr1:57684539-57684619 0.00022 16_[+1]_56 chr11:2000372-2000452 0.00022 25_[+1]_47 chr1:25606338-25606418 0.00022 52_[+1]_20 chr10:47619240-47619320 0.00022 27_[+1]_45 chr3:156178157-156178237 0.00029 25_[+1]_47 chr14:36733984-36734064 0.00029 28_[+1]_44 chr1:207809074-207809154 0.00029 43_[+1]_29 chr3:6582816-6582896 0.00029 27_[+1]_45 chr2:73128704-73128784 0.00029 34_[+1]_38 chr15:75987048-75987128 0.00029 66_[+1]_6 chr5:16418762-16418842 0.00034 39_[+1]_33 chr1:211395920-211396000 0.00034 29_[+1]_43 chr7:92515498-92515578 0.00041 64_[+1]_8 chr15:35459069-35459149 0.00041 21_[+1]_51 chrX:55041564-55041644 0.00041 50_[+1]_22 chr7:99432959-99433039 0.00041 29_[+1]_43 chr4:154449974-154450054 0.00041 32_[+1]_40 chr12:108879362-10887944 0.00041 40_[+1]_32 chr12:32207226-32207306 0.00041 1_[+1]_71 chrX:47543019-47543099 0.00041 60_[+1]_12 chr1:109677200-109677280 0.00041 55_[+1]_17 chr17:26854451-26854531 0.00041 43_[+1]_29 chr9:100987550-100987630 0.00049 17_[+1]_55 chr2:172487780-172487860 0.00049 9_[+1]_63 chr8:125503809-125503889 0.00049 63_[+1]_9 chrX:40403735-40403815 0.00049 64_[+1]_8 chr16:10437127-10437207 0.00049 5_[+1]_67 chr3:128773652-128773732 0.00049 42_[+1]_30 chr8:49379271-49379351 0.00049 57_[+1]_15 chr8:101776300-101776380 0.00049 70_[+1]_2 chr7:24903975-24904055 0.00049 32_[+1]_40 chr2:42587254-42587334 0.00049 5_[+1]_67 chr4:25052511-25052591 0.00049 72_[+1] chr15:69284217-69284297 0.00053 24_[+1]_48 chr12:125369560-12536964 0.00053 2_[+1]_70 chr1:6489892-6489972 0.00053 29_[+1]_43 chr12:32201001-32201081 0.00059 63_[+1]_9 chr2:209436645-209436725 0.00059 6_[+1]_66 chr21:46780263-46780343 0.00059 22_[+1]_50 chr17:62919227-62919307 0.00059 58_[+1]_14 chr7:139935086-139935166 0.00064 46_[+1]_26 chr4:145000055-145000135 0.00064 31_[+1]_41 chr5:29796338-29796418 0.00064 66_[+1]_6 chr9:130188247-130188327 0.00064 23_[+1]_49 chr14:35122453-35122533 0.00064 26_[+1]_46 chr3:32115896-32115976 0.00064 55_[+1]_17 chr21:40357698-40357778 0.00067 32_[+1]_40 chr9:69491642-69491722 0.00067 40_[+1]_32 chr5:32288425-32288505 0.00073 5_[+1]_67 chr9:4862938-4863018 0.00073 32_[+1]_40 chr6:164767861-164767941 0.00073 44_[+1]_28 chr6:80314390-80314470 0.00073 63_[+1]_9 chr1:228608954-228609034 0.00078 4_[+1]_68 chr16:21548249-21548329 0.00078 55_[+1]_17 chr14:24725573-24725653 0.00078 69_[+1]_3 chr1:16380761-16380841 0.00078 36_[+1]_36 chr16:23678666-23678746 0.00078 71_[+1]_1 chr6:159303106-159303186 0.00078 38_[+1]_34 chr4:160116727-160116807 0.00085 58_[+1]_14 chr4:145061887-145061967 0.00085 23_[+1]_49 chr4:144826776-144826856 0.00085 6_[+1]_66 chr19:516721-516801 0.00085 22_[+1]_50 chr13:44972142-44972222 0.00085 72_[+1] chr17:57779851-57779931 0.00094 23_[+1]_49 chrX:107801622-107801702 0.00094 3_[+1]_69 chr2:208825014-208825094 0.00094 26_[+1]_46 chr8:144016040-144016120 0.001 35_[+1]_37 chr5:139990824-139990904 0.001 33_[+1]_39 chr11:34258317-34258397 0.001 65_[+1]_7 chr22:43403778-43403858 0.0011 30_[+1]_42 chr1:27118200-27118280 0.0011 30_[+1]_42 chr3:141567990-141568070 0.0011 60_[+1]_12 chr12:23052373-23052453 0.0011 64_[+1]_8 chr8:93107687-93107767 0.0011 60_[+1]_12 chr17:19913652-19913732 0.0011 6_[+1]_66 chr16:24719244-24719324 0.0013 27_[+1]_45 chr5:131987935-131988015 0.0013 4_[+1]_68 chr13:19398961-19399041 0.0013 67_[+1]_5 chr17:62971016-62971096 0.0013 24_[+1]_48 chr19:381061-381141 0.0013 40_[+1]_32 chrX:55143171-55143251 0.0013 66_[+1]_6 chr20:46153258-46153338 0.0014 64_[+1]_8 chr13:99628356-99628436 0.0014 22_[+1]_50 chr16:21272972-21273052 0.0014 44_[+1]_28 chr11:6584656-6584736 0.0016 55_[+1]_17 chr6:112126190-112126270 0.0018 38_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGSN MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGSN width=8 seqs=141 chr4:140364987-140365067 ( 56) CAGCTGCC 1 chr14:70704601-70704681 ( 10) CAGCTGCC 1 chr4:81174849-81174929 ( 66) CAGCTGCC 1 chr13:95923475-95923555 ( 30) CAGCTGCC 1 chr7:77502866-77502946 ( 14) CAGCTGCC 1 chr17:72329119-72329199 ( 72) CAGCTGCC 1 chr10:14223346-14223426 ( 6) CAGCTGCT 1 chr7:128790236-128790316 ( 36) CAGCTGCT 1 chr11:75301072-75301152 ( 18) CAGCTGCT 1 chr15:88214705-88214785 ( 60) CAGCTGCT 1 chr1:151687996-151688076 ( 25) CAGCTGCT 1 chr1:25739902-25739982 ( 24) CAGCTGCT 1 chr10:126406630-12640671 ( 20) CAGCTGCG 1 chr8:37939618-37939698 ( 7) CAGCTGCG 1 chr8:37949368-37949448 ( 7) CAGCTGCG 1 chr14:100038931-10003901 ( 34) CAGCTGCT 1 chr7:99659268-99659348 ( 1) CAGCTGCT 1 chr17:14064902-14064982 ( 38) CAGCTGGC 1 chr22:30348250-30348330 ( 30) CAGCTGGC 1 chr5:657866-657946 ( 40) CAGCTGCA 1 chr8:73046748-73046828 ( 66) CAGCTGCA 1 chr14:30119972-30120052 ( 46) CAGCTGCA 1 chr18:43733357-43733437 ( 42) CAGCTGCA 1 chrX:114557033-114557113 ( 67) CAGCTGCA 1 chr12:27170367-27170447 ( 1) CAGCTGCA 1 chr2:173465560-173465640 ( 68) CAGCTGCA 1 chr2:239331048-239331128 ( 46) CAGCTGCA 1 chr3:14162498-14162578 ( 43) CAGCTGCA 1 chr7:102082193-102082273 ( 1) CAGCTGCA 1 chr10:43140678-43140758 ( 50) CAGCTGCA 1 chr14:20645714-20645794 ( 56) CAGCTGCA 1 chr20:37576734-37576814 ( 45) CAGCTGGT 1 chr22:40586636-40586716 ( 64) CAGCTGGT 1 chr1:228366652-228366732 ( 73) CAGCTGGG 1 chr9:127727082-127727162 ( 29) CAGCTGGT 1 chr1:95100704-95100784 ( 16) CAGCTGGT 1 chr1:35309372-35309452 ( 33) CAGCTGGA 1 chr22:35608140-35608220 ( 55) CAGCTGGA 1 chr5:168240749-168240829 ( 8) CAGCTGGA 1 chr7:104607709-104607789 ( 66) CAGCTGGA 1 chrX:153119177-153119257 ( 1) CAGCTGTC 1 chr22:36764683-36764763 ( 67) CAGCTGTC 1 chr15:63402282-63402362 ( 39) CAGCAGCC 1 chr1:224058428-224058508 ( 41) CAGCAGCC 1 chr17:4152921-4153001 ( 47) CAGCAGCC 1 chr4:109035775-109035855 ( 68) CAGCAGCC 1 chr2:58916104-58916184 ( 10) CAGCAGCC 1 chr20:9129839-9129919 ( 32) CAGCAGCC 1 chr20:20927152-20927232 ( 37) CAGCTGTG 1 chr2:17899105-17899185 ( 3) CAGCTGTG 1 chr7:90929381-90929461 ( 32) CATCTGCC 1 chr7:64405514-64405594 ( 40) CAGCTGTG 1 chr9:131355489-131355569 ( 47) CAGCTGTG 1 chr15:74902920-74903000 ( 66) CAGCTGTG 1 chr15:39432304-39432384 ( 25) CAGCTGTG 1 chr1:57684539-57684619 ( 17) CAGCAGCG 1 chr11:2000372-2000452 ( 26) CAGCAGCG 1 chr1:25606338-25606418 ( 53) CAGCAGCT 1 chr10:47619240-47619320 ( 28) CAGCAGCG 1 chr3:156178157-156178237 ( 26) CATCTGCT 1 chr14:36733984-36734064 ( 29) CTGCTGCC 1 chr1:207809074-207809154 ( 44) CTGCTGCC 1 chr3:6582816-6582896 ( 28) CTGCTGCC 1 chr2:73128704-73128784 ( 35) CATCTGCT 1 chr15:75987048-75987128 ( 67) CATCTGCG 1 chr5:16418762-16418842 ( 40) CAGATGCC 1 chr1:211395920-211396000 ( 30) CAGATGCC 1 chr7:92515498-92515578 ( 65) CATCTGCA 1 chr15:35459069-35459149 ( 22) CAGCAGGG 1 chrX:55041564-55041644 ( 51) CTGCTGCT 1 chr7:99432959-99433039 ( 30) CTGCTGCT 1 chr4:154449974-154450054 ( 33) CATCTGCA 1 chr12:108879362-10887944 ( 41) CATCTGCA 1 chr12:32207226-32207306 ( 2) CATCTGCA 1 chrX:47543019-47543099 ( 61) CAGCAGGT 1 chr1:109677200-109677280 ( 56) CTGCTGCT 1 chr17:26854451-26854531 ( 44) CAGCAGGG 1 chr9:100987550-100987630 ( 18) CATCTGGT 1 chr2:172487780-172487860 ( 10) CATCTGGG 1 chr8:125503809-125503889 ( 64) CATCTGGT 1 chrX:40403735-40403815 ( 65) CATCTGGT 1 chr16:10437127-10437207 ( 6) CATCTGGG 1 chr3:128773652-128773732 ( 43) CATCTGGT 1 chr8:49379271-49379351 ( 58) CAGATGCG 1 chr8:101776300-101776380 ( 71) CATCTGGG 1 chr7:24903975-24904055 ( 33) CATCTGGG 1 chr2:42587254-42587334 ( 6) CATCTGGG 1 chr4:25052511-25052591 ( 73) CAGATGCG 1 chr15:69284217-69284297 ( 25) CAGATGGC 1 chr12:125369560-12536964 ( 3) CAGATGGC 1 chr1:6489892-6489972 ( 30) CAGATGGC 1 chr12:32201001-32201081 ( 64) CTGCTGGT 1 chr2:209436645-209436725 ( 7) CTGCTGGG 1 chr21:46780263-46780343 ( 23) CTGCTGGT 1 chr17:62919227-62919307 ( 59) CATCTGGA 1 chr7:139935086-139935166 ( 47) CAGCAGTC 1 chr4:145000055-145000135 ( 32) CAGATGGG 1 chr5:29796338-29796418 ( 67) CAGATGGT 1 chr9:130188247-130188327 ( 24) CAGATGGG 1 chr14:35122453-35122533 ( 27) CAGATGGG 1 chr3:32115896-32115976 ( 56) CAGATGGG 1 chr21:40357698-40357778 ( 33) CATCTGTC 1 chr9:69491642-69491722 ( 41) CATCTGTC 1 chr5:32288425-32288505 ( 6) CATCAGCC 1 chr9:4862938-4863018 ( 33) CAGCAGTT 1 chr6:164767861-164767941 ( 45) CAGATGGA 1 chr6:80314390-80314470 ( 64) CAGATGGA 1 chr1:228608954-228609034 ( 5) CATCTGTG 1 chr16:21548249-21548329 ( 56) CTGCTGTC 1 chr14:24725573-24725653 ( 70) CATCTGTG 1 chr1:16380761-16380841 ( 37) CTGCTGTC 1 chr16:23678666-23678746 ( 72) CATCTGTT 1 chr6:159303106-159303186 ( 39) CATCTGTT 1 chr4:160116727-160116807 ( 59) CTGCAGCC 1 chr4:145061887-145061967 ( 24) CATCAGCT 1 chr4:144826776-144826856 ( 7) CATCAGCT 1 chr19:516721-516801 ( 23) CTGCAGCC 1 chr13:44972142-44972222 ( 73) CAGATGTC 1 chr17:57779851-57779931 ( 24) CTGCTGTG 1 chrX:107801622-107801702 ( 4) CATCAGGC 1 chr2:208825014-208825094 ( 27) CTGCTGTG 1 chr8:144016040-144016120 ( 36) CAGATGTG 1 chr5:139990824-139990904 ( 34) CTGCAGCT 1 chr11:34258317-34258397 ( 66) CTGCAGCT 1 chr22:43403778-43403858 ( 31) CTGCAGGC 1 chr1:27118200-27118280 ( 31) CTGCAGGC 1 chr3:141567990-141568070 ( 61) CAGAAGCT 1 chr12:23052373-23052453 ( 65) CTGCAGGC 1 chr8:93107687-93107767 ( 61) CATCAGGG 1 chr17:19913652-19913732 ( 7) CTGCAGGC 1 chr16:24719244-24719324 ( 28) CAGAAGGC 1 chr5:131987935-131988015 ( 5) CTGATGCC 1 chr13:19398961-19399041 ( 68) CTGCAGCA 1 chr17:62971016-62971096 ( 25) CAGATGTA 1 chr19:381061-381141 ( 41) CAGATGTA 1 chrX:55143171-55143251 ( 67) CTGCAGGG 1 chr20:46153258-46153338 ( 65) CAGAAGGT 1 chr13:99628356-99628436 ( 23) CTTCTGGT 1 chr16:21272972-21273052 ( 45) CAGAAGGT 1 chr11:6584656-6584736 ( 56) CTGATGCA 1 chr6:112126190-112126270 ( 39) CTTCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGSN MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.79481 E= 1.9e-051 -1378 204 -1378 -1378 169 -1378 -1378 -40 -1378 -1378 162 -20 -56 177 -1378 -1378 -1 -1378 -1378 157 -1378 -1378 198 -1378 -1378 101 43 -57 -39 29 -3 5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGSN MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 141 E= 1.9e-051 0.000000 1.000000 0.000000 0.000000 0.808511 0.000000 0.000000 0.191489 0.000000 0.000000 0.780142 0.219858 0.170213 0.829787 0.000000 0.000000 0.248227 0.000000 0.000000 0.751773 0.000000 0.000000 1.000000 0.000000 0.000000 0.489362 0.340426 0.170213 0.191489 0.297872 0.248227 0.262411 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGSN MEME-1 regular expression -------------------------------------------------------------------------------- CA[GT]C[TA]G[CG][CTG] -------------------------------------------------------------------------------- Time 4.81 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGATAAR MEME-2 width = 8 sites = 96 llr = 717 E-value = 4.3e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGATAAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 17:a:a83 pos.-specific C 4::::::2 probability G 3:a:::25 matrix T 23::a::1 bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 ****** Entropy 1.0 ****** (10.8 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GT GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:14223346-14223426 63 1.54e-05 TCTGGGAGCC CAGATAAG GAGAAAGCTG chr12:32201001-32201081 29 1.54e-05 ctttacacaa cagataag tggctttaaa chr20:35783245-35783325 72 1.54e-05 aggagaagag cagataag a chr17:26854451-26854531 34 1.54e-05 CCAGGATAGG CAGATAAG GACAGCAGGG chr8:37939618-37939698 71 1.54e-05 ctggtgagta cagataag gc chr8:37949368-37949448 71 1.54e-05 ctggtgagta cagataag gc chr13:19398961-19399041 30 1.54e-05 aagttaagtg cagataag ggaacctgga chr4:25052511-25052591 29 1.54e-05 CTGTTAGGGT CAGATAAG TCCTGGTTAG chr20:20927152-20927232 15 3.14e-05 CTGTTTAAAG GAGATAAG GTGGGGGCTC chr2:172487780-172487860 36 3.14e-05 tggaggacat gagataag attgtgcagg chr15:35459069-35459149 45 3.14e-05 GAGCTTAAGA GAGATAAG ACATGACTTT chr1:35602538-35602618 34 3.14e-05 ttggggcaaa gagataag aggttggggc chr6:16263860-16263940 71 3.14e-05 ttggggtgca gagataag ag chr16:21548249-21548329 36 3.14e-05 TGCTTTCCCC GAGATAAG GCCATGAGGC chr8:101776300-101776380 9 3.14e-05 GTGACAGT GAGATAAG GCAAGAACAT chr9:69491642-69491722 26 3.14e-05 ctttgcagtt gagataag aggaaggcat chr14:88491087-88491167 69 3.14e-05 ctttgcagtt gagataag agga chr21:47740486-47740566 22 4.66e-05 tgcacccacc cagataaa gacataaaca chr17:14064902-14064982 63 4.66e-05 tggaagagaa cagataaa gaaagtgaat chrX:55054617-55054697 15 4.66e-05 CTGCAGACCA CAGATAAA GTTGCCAGAG chr9:4862938-4863018 68 4.66e-05 GTTTTTTAGG CAGATAAA CCTGT chr17:19913652-19913732 17 4.66e-05 CTGCAGGCAG CAGATAAA GTGTTTTTTG chr8:73046748-73046828 46 7.73e-05 ctgtggcgcc tagataag ggttcaagaa chr22:32291961-32292041 34 7.73e-05 CTGGCCCTAC TAGATAAG CATATCCCAA chr7:90929381-90929461 70 7.73e-05 cctgctatca tagataag gtc chr16:9171927-9172007 72 7.73e-05 ctgcggcagg cagataac c chr5:178110917-178110997 8 7.73e-05 gtggcct tagataag agagtgaatg chr15:31270652-31270732 7 7.73e-05 TTGTTC TAGATAAG AGAAACTAGT chr7:39849956-39850036 29 7.73e-05 GCACATGGGC CAGATAAC ACAGCACAGC chr7:104607709-104607789 4 7.73e-05 GAG TAGATAAG GCAAGCTGGG chr6:80314390-80314470 32 7.73e-05 gtgttggggg cagataac ttgtcttttt chr17:52938596-52938676 25 9.29e-05 GCTGCCTTAA CTGATAAG CCTATGAATG chrX:107801622-107801702 30 9.29e-05 TGTAAAGGTG CTGATAAG ATATGATGGG chrX:114557033-114557113 22 9.29e-05 ctggcacaca ctgataag ggaacttgca chr1:109677200-109677280 18 9.29e-05 CGTTGGCCTA CTGATAAG AAACCGTGGC chr1:207020988-207021068 50 9.29e-05 acttgtcacc ctgataag aatgacacag chr7:24903975-24904055 63 9.29e-05 atgtgcattg ctgataag ttcccgggtg chr11:62645222-62645302 64 9.29e-05 caggtggtgg ctgataag attggagag chr14:35122453-35122533 55 9.29e-05 ctttgcatta ctgataag ccctctatca chr15:93160919-93160999 58 1.09e-04 GTGGAGAGGA GAGATAAA GCAGCCACGG chr4:140364987-140365067 7 1.09e-04 tcggag gagataaa ccctacactg chr5:168240749-168240829 73 1.09e-04 CAGGCTGAGC GAGATAAA chr2:239331048-239331128 64 1.09e-04 GTCAGGTGAG GAGATAAA TGCTGCTGG chr5:32288425-32288505 29 1.09e-04 acctttgtct gagataaa ctctgcactg chr6:159303106-159303186 72 1.09e-04 ctgggttctg gagataaa g chr4:109035775-109035855 44 1.24e-04 AATGTCTGAG GAGATAAC ACGAAAATAC chr2:73128704-73128784 55 1.24e-04 AGAGGGGAGT GAGATAAC AGACATAAGC chr4:154449974-154450054 1 1.72e-04 . CAGATAGG GTAGACTTTG chr16:10437127-10437207 32 1.72e-04 tgaaggtccc aagataag cctgagcaaa chr5:131987935-131988015 38 1.72e-04 ctgggaggcc aagataag aggatcactt chr1:25739902-25739982 68 1.72e-04 GTGTTCAGGG GTGATAAG AAGTG chr15:39432304-39432384 13 1.72e-04 TCGCCCTGCA GTGATAAG AGCACAGCTG chr14:23366711-23366791 18 1.72e-04 AAGCTGCTTC AAGATAAG GTCTGAGGCT chr20:46153258-46153338 23 1.87e-04 catgccagtt tagataaa atgacttggg chr1:207693581-207693661 51 1.87e-04 atgggacagc tagataaa acctacttga chr2:58916104-58916184 33 1.87e-04 cagggcctta tagataaa actcctatct chr9:127727082-127727162 73 1.87e-04 agcagcttta tagataaa chr7:99321010-99321090 8 2.18e-04 ctgacaa tagataac ttcctttaac chrX:55041564-55041644 61 2.66e-04 CTGCTGCTTT GAGATAGG ACTTTCAAGT chr6:44439455-44439535 51 2.66e-04 AGGCCTGGTG CTGATAAC CTAGTATCAG chr11:5181581-5181661 54 2.66e-04 tcagcaaagg gagatagg agtggggctg chr3:125152086-125152166 9 2.66e-04 gtgcagtg ctgataac accaacgttg chr14:24725573-24725653 14 2.66e-04 ACCAGCCTGC CTGATAAC CAAGTCCCTG chr12:125369560-12536964 55 2.66e-04 ctgggtgggc ctgataac tgcattttca chr4:1884786-1884866 5 2.66e-04 aaaa ttgataag ttgtgttgtt chr19:14502099-14502179 9 2.66e-04 gccaaatc ctgataac caagtgtatg chr19:381061-381141 73 2.66e-04 ACCGTGGTGA TTGATAAG chr16:15615927-15616007 9 3.28e-04 CTGGGTTT CAGATAAT TAAGTATCTT chr11:75301072-75301152 31 3.28e-04 CTGCTCTGGC CAGATAGA CACAGTTGGC chr19:6682888-6682968 7 3.28e-04 ccaaca aagataaa aatgcagcaa chr21:40357698-40357778 67 3.28e-04 TGGGTGTTCA CAGATAGA GCTGGA chr22:35608140-35608220 37 3.28e-04 CCACCTAACA AAGATAAA ATGTCCTCAG chr1:228366652-228366732 19 3.28e-04 gtgctctggc cagataga ggtgggctct chr3:6582816-6582896 58 3.28e-04 atgccctctc cagataga agggaatcta chr1:65487630-65487710 58 3.28e-04 ACGTTAGACT GTGATAAA GGTGACTCAA chr17:72329119-72329199 42 3.28e-04 GCTGTTGGGA AAGATAAA TAAAGTATAA chr22:36764683-36764763 13 3.90e-04 CAATTTCTCT AAGATAAC AGTGCTGGGA chr5:29796338-29796418 41 3.90e-04 AAGTTGAATA AAGATAAC CTGGACCACC chr22:32022708-32022788 38 3.90e-04 TTGGCCTGCA CAGATAGC GGAAGGAAGA chr4:144940566-144940646 3 4.22e-04 AG CTGATAGG CAGGGGAGGC chr6:74238819-74238899 63 4.70e-04 ctgtaaaaag gagataat aataactatt chr8:144016040-144016120 1 5.01e-04 . TTGATAAC GAACTGAGCG chr8:98790783-98790863 56 5.01e-04 ttgtgtccgg ttgataac acccaaagcc chr18:43733357-43733437 62 5.01e-04 CTGATGCAGG GAGATAGC CTCCTAACTG chr16:25783258-25783338 21 5.33e-04 CATTTAGTGG AAGATAGG ATAACGTTTC chr18:968399-968479 1 5.33e-04 . GTGATAGG CTCTTATCTT chr13:95923475-95923555 61 5.33e-04 AGTGTGCAAT GTGATAGG GGCTGGCTGG chr1:70005902-70005982 41 5.33e-04 GGTGAGGACT AAGATAGG GTCGAGTTAT chr7:139935086-139935166 60 5.65e-04 CAGTCTCTGC TAGATAAT CCAACCGGTT chr11:34258317-34258397 20 5.65e-04 TGCTCGCTCC TAGATAGA TTAGCACCTT chr2:169990981-169991061 56 6.74e-04 acttggttta ctgatagc agttccacca chr5:176421976-176422056 44 7.54e-04 tctggctttt cagatagt gttatcaagg chr22:40586636-40586716 51 7.54e-04 CTGCCCTGGT GTGATAAT GCTATCAGCT chr5:657866-657946 12 7.85e-04 GTGCGTCACT GTGATAGC TTCCCTGCCA chr4:111170120-111170200 51 9.30e-04 ctggcaagaa ctgatagt ggaagagtac chr13:39573043-39573123 35 9.30e-04 catgtggggc atgataga gagcctgcct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:14223346-14223426 1.5e-05 62_[+2]_10 chr12:32201001-32201081 1.5e-05 28_[+2]_44 chr20:35783245-35783325 1.5e-05 71_[+2]_1 chr17:26854451-26854531 1.5e-05 33_[+2]_39 chr8:37939618-37939698 1.5e-05 70_[+2]_2 chr8:37949368-37949448 1.5e-05 70_[+2]_2 chr13:19398961-19399041 1.5e-05 29_[+2]_43 chr4:25052511-25052591 1.5e-05 28_[+2]_44 chr20:20927152-20927232 3.1e-05 14_[+2]_58 chr2:172487780-172487860 3.1e-05 35_[+2]_37 chr15:35459069-35459149 3.1e-05 44_[+2]_28 chr1:35602538-35602618 3.1e-05 33_[+2]_39 chr6:16263860-16263940 3.1e-05 70_[+2]_2 chr16:21548249-21548329 3.1e-05 35_[+2]_37 chr8:101776300-101776380 3.1e-05 8_[+2]_64 chr9:69491642-69491722 3.1e-05 25_[+2]_47 chr14:88491087-88491167 3.1e-05 68_[+2]_4 chr21:47740486-47740566 4.7e-05 21_[+2]_51 chr17:14064902-14064982 4.7e-05 62_[+2]_10 chrX:55054617-55054697 4.7e-05 14_[+2]_58 chr9:4862938-4863018 4.7e-05 67_[+2]_5 chr17:19913652-19913732 4.7e-05 16_[+2]_56 chr8:73046748-73046828 7.7e-05 45_[+2]_27 chr22:32291961-32292041 7.7e-05 33_[+2]_39 chr7:90929381-90929461 7.7e-05 69_[+2]_3 chr16:9171927-9172007 7.7e-05 71_[+2]_1 chr5:178110917-178110997 7.7e-05 7_[+2]_65 chr15:31270652-31270732 7.7e-05 6_[+2]_66 chr7:39849956-39850036 7.7e-05 28_[+2]_44 chr7:104607709-104607789 7.7e-05 3_[+2]_69 chr6:80314390-80314470 7.7e-05 31_[+2]_41 chr17:52938596-52938676 9.3e-05 24_[+2]_48 chrX:107801622-107801702 9.3e-05 29_[+2]_43 chrX:114557033-114557113 9.3e-05 21_[+2]_51 chr1:109677200-109677280 9.3e-05 17_[+2]_55 chr1:207020988-207021068 9.3e-05 49_[+2]_23 chr7:24903975-24904055 9.3e-05 62_[+2]_10 chr11:62645222-62645302 9.3e-05 63_[+2]_9 chr14:35122453-35122533 9.3e-05 54_[+2]_18 chr15:93160919-93160999 0.00011 57_[+2]_15 chr4:140364987-140365067 0.00011 6_[+2]_66 chr5:168240749-168240829 0.00011 72_[+2] chr2:239331048-239331128 0.00011 63_[+2]_9 chr5:32288425-32288505 0.00011 28_[+2]_44 chr6:159303106-159303186 0.00011 71_[+2]_1 chr4:109035775-109035855 0.00012 43_[+2]_29 chr2:73128704-73128784 0.00012 54_[+2]_18 chr4:154449974-154450054 0.00017 [+2]_72 chr16:10437127-10437207 0.00017 31_[+2]_41 chr5:131987935-131988015 0.00017 37_[+2]_35 chr1:25739902-25739982 0.00017 67_[+2]_5 chr15:39432304-39432384 0.00017 12_[+2]_60 chr14:23366711-23366791 0.00017 17_[+2]_55 chr20:46153258-46153338 0.00019 22_[+2]_50 chr1:207693581-207693661 0.00019 50_[+2]_22 chr2:58916104-58916184 0.00019 32_[+2]_40 chr9:127727082-127727162 0.00019 72_[+2] chr7:99321010-99321090 0.00022 7_[+2]_65 chrX:55041564-55041644 0.00027 60_[+2]_12 chr6:44439455-44439535 0.00027 50_[+2]_22 chr11:5181581-5181661 0.00027 53_[+2]_19 chr3:125152086-125152166 0.00027 8_[+2]_64 chr14:24725573-24725653 0.00027 13_[+2]_59 chr12:125369560-12536964 0.00027 54_[+2]_18 chr4:1884786-1884866 0.00027 4_[+2]_68 chr19:14502099-14502179 0.00027 8_[+2]_64 chr19:381061-381141 0.00027 72_[+2] chr16:15615927-15616007 0.00033 8_[+2]_64 chr11:75301072-75301152 0.00033 30_[+2]_42 chr19:6682888-6682968 0.00033 6_[+2]_66 chr21:40357698-40357778 0.00033 66_[+2]_6 chr22:35608140-35608220 0.00033 36_[+2]_36 chr1:228366652-228366732 0.00033 18_[+2]_54 chr3:6582816-6582896 0.00033 57_[+2]_15 chr1:65487630-65487710 0.00033 57_[+2]_15 chr17:72329119-72329199 0.00033 41_[+2]_31 chr22:36764683-36764763 0.00039 12_[+2]_60 chr5:29796338-29796418 0.00039 40_[+2]_32 chr22:32022708-32022788 0.00039 37_[+2]_35 chr4:144940566-144940646 0.00042 2_[+2]_70 chr6:74238819-74238899 0.00047 62_[+2]_10 chr8:144016040-144016120 0.0005 [+2]_72 chr8:98790783-98790863 0.0005 55_[+2]_17 chr18:43733357-43733437 0.0005 61_[+2]_11 chr16:25783258-25783338 0.00053 20_[+2]_52 chr18:968399-968479 0.00053 [+2]_72 chr13:95923475-95923555 0.00053 60_[+2]_12 chr1:70005902-70005982 0.00053 40_[+2]_32 chr7:139935086-139935166 0.00057 59_[+2]_13 chr11:34258317-34258397 0.00057 19_[+2]_53 chr2:169990981-169991061 0.00067 55_[+2]_17 chr5:176421976-176422056 0.00075 43_[+2]_29 chr22:40586636-40586716 0.00075 50_[+2]_22 chr5:657866-657946 0.00079 11_[+2]_61 chr4:111170120-111170200 0.00093 50_[+2]_22 chr13:39573043-39573123 0.00093 34_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGATAAR width=8 seqs=96 chr10:14223346-14223426 ( 63) CAGATAAG 1 chr12:32201001-32201081 ( 29) CAGATAAG 1 chr20:35783245-35783325 ( 72) CAGATAAG 1 chr17:26854451-26854531 ( 34) CAGATAAG 1 chr8:37939618-37939698 ( 71) CAGATAAG 1 chr8:37949368-37949448 ( 71) CAGATAAG 1 chr13:19398961-19399041 ( 30) CAGATAAG 1 chr4:25052511-25052591 ( 29) CAGATAAG 1 chr20:20927152-20927232 ( 15) GAGATAAG 1 chr2:172487780-172487860 ( 36) GAGATAAG 1 chr15:35459069-35459149 ( 45) GAGATAAG 1 chr1:35602538-35602618 ( 34) GAGATAAG 1 chr6:16263860-16263940 ( 71) GAGATAAG 1 chr16:21548249-21548329 ( 36) GAGATAAG 1 chr8:101776300-101776380 ( 9) GAGATAAG 1 chr9:69491642-69491722 ( 26) GAGATAAG 1 chr14:88491087-88491167 ( 69) GAGATAAG 1 chr21:47740486-47740566 ( 22) CAGATAAA 1 chr17:14064902-14064982 ( 63) CAGATAAA 1 chrX:55054617-55054697 ( 15) CAGATAAA 1 chr9:4862938-4863018 ( 68) CAGATAAA 1 chr17:19913652-19913732 ( 17) CAGATAAA 1 chr8:73046748-73046828 ( 46) TAGATAAG 1 chr22:32291961-32292041 ( 34) TAGATAAG 1 chr7:90929381-90929461 ( 70) TAGATAAG 1 chr16:9171927-9172007 ( 72) CAGATAAC 1 chr5:178110917-178110997 ( 8) TAGATAAG 1 chr15:31270652-31270732 ( 7) TAGATAAG 1 chr7:39849956-39850036 ( 29) CAGATAAC 1 chr7:104607709-104607789 ( 4) TAGATAAG 1 chr6:80314390-80314470 ( 32) CAGATAAC 1 chr17:52938596-52938676 ( 25) CTGATAAG 1 chrX:107801622-107801702 ( 30) CTGATAAG 1 chrX:114557033-114557113 ( 22) CTGATAAG 1 chr1:109677200-109677280 ( 18) CTGATAAG 1 chr1:207020988-207021068 ( 50) CTGATAAG 1 chr7:24903975-24904055 ( 63) CTGATAAG 1 chr11:62645222-62645302 ( 64) CTGATAAG 1 chr14:35122453-35122533 ( 55) CTGATAAG 1 chr15:93160919-93160999 ( 58) GAGATAAA 1 chr4:140364987-140365067 ( 7) GAGATAAA 1 chr5:168240749-168240829 ( 73) GAGATAAA 1 chr2:239331048-239331128 ( 64) GAGATAAA 1 chr5:32288425-32288505 ( 29) GAGATAAA 1 chr6:159303106-159303186 ( 72) GAGATAAA 1 chr4:109035775-109035855 ( 44) GAGATAAC 1 chr2:73128704-73128784 ( 55) GAGATAAC 1 chr4:154449974-154450054 ( 1) CAGATAGG 1 chr16:10437127-10437207 ( 32) AAGATAAG 1 chr5:131987935-131988015 ( 38) AAGATAAG 1 chr1:25739902-25739982 ( 68) GTGATAAG 1 chr15:39432304-39432384 ( 13) GTGATAAG 1 chr14:23366711-23366791 ( 18) AAGATAAG 1 chr20:46153258-46153338 ( 23) TAGATAAA 1 chr1:207693581-207693661 ( 51) TAGATAAA 1 chr2:58916104-58916184 ( 33) TAGATAAA 1 chr9:127727082-127727162 ( 73) TAGATAAA 1 chr7:99321010-99321090 ( 8) TAGATAAC 1 chrX:55041564-55041644 ( 61) GAGATAGG 1 chr6:44439455-44439535 ( 51) CTGATAAC 1 chr11:5181581-5181661 ( 54) GAGATAGG 1 chr3:125152086-125152166 ( 9) CTGATAAC 1 chr14:24725573-24725653 ( 14) CTGATAAC 1 chr12:125369560-12536964 ( 55) CTGATAAC 1 chr4:1884786-1884866 ( 5) TTGATAAG 1 chr19:14502099-14502179 ( 9) CTGATAAC 1 chr19:381061-381141 ( 73) TTGATAAG 1 chr16:15615927-15616007 ( 9) CAGATAAT 1 chr11:75301072-75301152 ( 31) CAGATAGA 1 chr19:6682888-6682968 ( 7) AAGATAAA 1 chr21:40357698-40357778 ( 67) CAGATAGA 1 chr22:35608140-35608220 ( 37) AAGATAAA 1 chr1:228366652-228366732 ( 19) CAGATAGA 1 chr3:6582816-6582896 ( 58) CAGATAGA 1 chr1:65487630-65487710 ( 58) GTGATAAA 1 chr17:72329119-72329199 ( 42) AAGATAAA 1 chr22:36764683-36764763 ( 13) AAGATAAC 1 chr5:29796338-29796418 ( 41) AAGATAAC 1 chr22:32022708-32022788 ( 38) CAGATAGC 1 chr4:144940566-144940646 ( 3) CTGATAGG 1 chr6:74238819-74238899 ( 63) GAGATAAT 1 chr8:144016040-144016120 ( 1) TTGATAAC 1 chr8:98790783-98790863 ( 56) TTGATAAC 1 chr18:43733357-43733437 ( 62) GAGATAGC 1 chr16:25783258-25783338 ( 21) AAGATAGG 1 chr18:968399-968479 ( 1) GTGATAGG 1 chr13:95923475-95923555 ( 61) GTGATAGG 1 chr1:70005902-70005982 ( 41) AAGATAGG 1 chr7:139935086-139935166 ( 60) TAGATAAT 1 chr11:34258317-34258397 ( 20) TAGATAGA 1 chr2:169990981-169991061 ( 56) CTGATAGC 1 chr5:176421976-176422056 ( 44) CAGATAGT 1 chr22:40586636-40586716 ( 51) GTGATAAT 1 chr5:657866-657946 ( 12) GTGATAGC 1 chr4:111170120-111170200 ( 51) CTGATAGT 1 chr13:39573043-39573123 ( 35) ATGATAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.47551 E= 4.3e-042 -113 78 20 -51 150 -1323 -1323 21 -1323 -1323 198 -1323 200 -1323 -1323 -1323 -1323 -1323 -1323 198 200 -1323 -1323 -1323 166 -1323 -28 -1323 6 -30 92 -201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 4.3e-042 0.114583 0.416667 0.291667 0.177083 0.708333 0.000000 0.000000 0.291667 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.791667 0.000000 0.208333 0.000000 0.260417 0.197917 0.479167 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAR MEME-2 regular expression -------------------------------------------------------------------------------- [CG][AT]GATA[AG][GA] -------------------------------------------------------------------------------- Time 8.25 secs. ******************************************************************************** ******************************************************************************** MOTIF BBTTATCT MEME-3 width = 8 sites = 72 llr = 563 E-value = 1.8e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif BBTTATCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::3 pos.-specific C 342:::a: probability G 43:::::: matrix T 438a:a:8 bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 ****** Entropy 1.0 ****** (11.3 bits) 0.8 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTTATCT consensus TGC A sequence CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BBTTATCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:57684539-57684619 37 3.06e-05 GAGGGGAGGG GCTTATCT AGCCACAGCA chr17:57762494-57762574 22 3.06e-05 GAGAATTGCT GCTTATCT CTTCAAAGGC chr17:11876224-11876304 64 3.06e-05 cgccccaacc tcttatct ctgcgtccc chr14:30119972-30120052 24 3.06e-05 tgtaacttac gcttatct attttgtgac chr4:154449974-154450054 47 3.06e-05 TGCAATGGTT TCTTATCT GACCATGCAC chr15:69284217-69284297 68 3.06e-05 ccttgcatgg gcttatct cataa chr9:131355489-131355569 20 3.06e-05 GTCGATGACT GCTTATCT CATTGGTTGC chr2:173465560-173465640 22 3.06e-05 tcttcgtcca gcttatct ggaagggaga chr18:968399-968479 10 3.06e-05 GTGATAGGC TCTTATCT TAGCCTTTCC chr22:30348250-30348330 14 3.06e-05 TATTTTAGCA GCTTATCT GTGCCCCACA chr14:20645714-20645794 34 3.06e-05 tgcaactcat gcttatct atcttgtgac chr1:211395920-211396000 42 3.06e-05 gatgccttcc tcttatct caactgcaaa chr8:125503809-125503889 30 4.53e-05 TCACTGAATG CCTTATCT AAAGTGCCAG chr13:50420834-50420914 73 4.53e-05 AGCCCATGTT CCTTATCT chr16:23678666-23678746 23 4.53e-05 TGTGCTTACA CCTTATCT ATGAACAGTC chr16:15615927-15616007 52 7.72e-05 GCAGGGGTGT GGTTATCT TCCTTTTACA chr14:70704601-70704681 64 7.72e-05 tgctccttga ggttatct gctggaaca chr10:28783483-28783563 10 7.72e-05 gataacctc tgttatct tcagggccca chr22:36764683-36764763 41 7.72e-05 GGTGGAGGAG TGTTATCT CCCCACCCTT chr18:55444154-55444234 28 7.72e-05 TTATGCAATC TGTTATCT TCCTTTCCAA chr14:102144511-10214459 2 7.72e-05 A TGTTATCT ACATTGAACA chr12:32207226-32207306 65 7.72e-05 tgctccttga ggttatct actggaac chr1:228608954-228609034 67 7.72e-05 tgctccttga ggttatct actggg chr6:27741814-27741894 35 7.72e-05 acactggtta tgttatct atagtttcca chr6:38764353-38764433 14 7.72e-05 taactggtta tgttatct atagattcca chr15:74902920-74903000 44 7.72e-05 TGCTTTTGGC TGTTATCT ATCACGACAG chr7:5123120-5123200 14 7.72e-05 CATCCGGCAT GGTTATCT GCGCTTGCAA chr17:6897205-6897285 35 1.09e-04 attatttata gtttatct tgagaacaca chr1:27118200-27118280 46 1.09e-04 GGCTAGGGCT GTTTATCT GTGACTGTCA chr5:157038183-157038263 21 1.09e-04 ggcaaacgac ttttatct tgagtacgaa chrX:40403735-40403815 12 1.09e-04 CTGTACAGAG TTTTATCT GAAAAACCAG chr3:6582816-6582896 2 1.09e-04 g ttttatct ataagtccct chr9:127727082-127727162 37 1.09e-04 ggcagctggt gtttatct tttctgtcaa chr7:77502866-77502946 60 1.09e-04 gcagcacaag gtttatct cttcagacaa chr3:57584946-57585026 63 1.09e-04 tcagatatgc gtttatct cagtgagcag chr22:43403778-43403858 10 1.40e-04 AGCCATCAT CTTTATCT CAGGATTCCA chr1:35309372-35309452 18 1.40e-04 GGGAGGCCTC CTTTATCT CTGGCTCCAG chr4:81174849-81174929 5 1.40e-04 CATG CTTTATCT TCTAGGGTCA chr18:77361346-77361426 60 1.40e-04 ctccgcagtc ctttatct caacctcgca chr6:10750103-10750183 49 1.40e-04 ATTTTTGCCT CTTTATCT AAAGGTAGGC chr10:126406630-12640671 41 1.40e-04 GCAGTGATCT CTTTATCT AGGAGGCCTG chr11:124537650-12453773 53 1.40e-04 GCTTCTATAT CTTTATCT CTTCTAGACA chr3:32115896-32115976 20 1.40e-04 ttcctttact ctttatct ccagaaccca chr7:92515498-92515578 3 1.70e-04 tt gcttatca gcttaagaag chr1:65487630-65487710 4 1.70e-04 GTG TCTTATCA CTGTAACAGG chr16:21272972-21273052 64 1.70e-04 GGCAACACAG TCTTATCA TGTTGGCCA chr1:25606338-25606418 42 1.70e-04 GAGCCCATCA GCTTATCA AACCAGCAGC chr6:159303106-159303186 8 1.70e-04 gtaatgg gcttatca gtaatgtgaa chr8:38068322-38068402 8 1.70e-04 ACAACAG GCTTATCA GAAACCTACC chr2:6987583-6987663 22 1.99e-04 ccagaggctc tcctatct gtgcagccgt chr2:58916104-58916184 43 1.99e-04 tagataaaac tcctatct ccctgggaca chr6:160992396-160992476 19 2.14e-04 gcagtctgtc ccttatca gagctctagt chr7:99321010-99321090 70 2.59e-04 actgacccac ccctatct ccc chrX:79767992-79768072 4 2.59e-04 ctt ccctatct tagtgtgcct chr20:33780335-33780415 30 2.59e-04 cttttagctt ccctatct tagtgcacct chr12:23052373-23052453 53 2.59e-04 gtgcaagttc ccctatct gtgcctgcag chr12:27170367-27170447 37 2.59e-04 cttttagctt ccctatct tagtgcacct chr1:28851658-28851738 7 2.59e-04 tgcact ggttatca gaacggaaca chr10:13747880-13747960 68 2.59e-04 ATTCCTACCG GGTTATCA TGGGC chr1:191793075-191793155 24 3.21e-04 ATTTCAAAAA GTTTATCA TTTTGAGAAG chr7:105659263-105659343 10 3.21e-04 ATGCTGTGC TGCTATCT tgcttcccaa chr5:158555240-158555320 24 3.21e-04 AAGCCCCTGG GGCTATCT CATATCTGTG chr11:5181581-5181661 2 3.21e-04 t ttttatca cctgggtgca chr16:8688304-8688384 45 3.21e-04 CCAGGCACCG TGCTATCT CACTACAGCA chr14:23366711-23366791 58 3.21e-04 CACATGCCCA TGCTATCT CCCAGGGCCC chr18:75034043-75034123 71 3.67e-04 atgacacagc cgttatca ga chr5:70681215-70681295 12 3.67e-04 CACGATTTCA CGTTATCA GTGCAGTTCG chr15:35459069-35459149 6 4.85e-04 GAAAA TGCTATCA TTCTCAAGCA chr7:90929381-90929461 62 4.85e-04 cattcccacc tgctatca tagataaggt chr11:75301072-75301152 49 4.85e-04 CACAGTTGGC TGCTATCA GTAGGACCTT chr9:14395860-14395940 71 5.15e-04 TGAAGCTGTT TTCTATCA GG chr14:35122453-35122533 65 5.44e-04 ctgataagcc ctctatca ttactgac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BBTTATCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:57684539-57684619 3.1e-05 36_[+3]_36 chr17:57762494-57762574 3.1e-05 21_[+3]_51 chr17:11876224-11876304 3.1e-05 63_[+3]_9 chr14:30119972-30120052 3.1e-05 23_[+3]_49 chr4:154449974-154450054 3.1e-05 46_[+3]_26 chr15:69284217-69284297 3.1e-05 67_[+3]_5 chr9:131355489-131355569 3.1e-05 19_[+3]_53 chr2:173465560-173465640 3.1e-05 21_[+3]_51 chr18:968399-968479 3.1e-05 9_[+3]_63 chr22:30348250-30348330 3.1e-05 13_[+3]_59 chr14:20645714-20645794 3.1e-05 33_[+3]_39 chr1:211395920-211396000 3.1e-05 41_[+3]_31 chr8:125503809-125503889 4.5e-05 29_[+3]_43 chr13:50420834-50420914 4.5e-05 72_[+3] chr16:23678666-23678746 4.5e-05 22_[+3]_50 chr16:15615927-15616007 7.7e-05 51_[+3]_21 chr14:70704601-70704681 7.7e-05 63_[+3]_9 chr10:28783483-28783563 7.7e-05 9_[+3]_63 chr22:36764683-36764763 7.7e-05 40_[+3]_32 chr18:55444154-55444234 7.7e-05 27_[+3]_45 chr14:102144511-10214459 7.7e-05 1_[+3]_71 chr12:32207226-32207306 7.7e-05 64_[+3]_8 chr1:228608954-228609034 7.7e-05 66_[+3]_6 chr6:27741814-27741894 7.7e-05 34_[+3]_38 chr6:38764353-38764433 7.7e-05 13_[+3]_59 chr15:74902920-74903000 7.7e-05 43_[+3]_29 chr7:5123120-5123200 7.7e-05 13_[+3]_59 chr17:6897205-6897285 0.00011 34_[+3]_38 chr1:27118200-27118280 0.00011 45_[+3]_27 chr5:157038183-157038263 0.00011 20_[+3]_52 chrX:40403735-40403815 0.00011 11_[+3]_61 chr3:6582816-6582896 0.00011 1_[+3]_71 chr9:127727082-127727162 0.00011 36_[+3]_36 chr7:77502866-77502946 0.00011 59_[+3]_13 chr3:57584946-57585026 0.00011 62_[+3]_10 chr22:43403778-43403858 0.00014 9_[+3]_63 chr1:35309372-35309452 0.00014 17_[+3]_55 chr4:81174849-81174929 0.00014 4_[+3]_68 chr18:77361346-77361426 0.00014 59_[+3]_13 chr6:10750103-10750183 0.00014 48_[+3]_24 chr10:126406630-12640671 0.00014 40_[+3]_32 chr11:124537650-12453773 0.00014 52_[+3]_20 chr3:32115896-32115976 0.00014 19_[+3]_53 chr7:92515498-92515578 0.00017 2_[+3]_70 chr1:65487630-65487710 0.00017 3_[+3]_69 chr16:21272972-21273052 0.00017 63_[+3]_9 chr1:25606338-25606418 0.00017 41_[+3]_31 chr6:159303106-159303186 0.00017 7_[+3]_65 chr8:38068322-38068402 0.00017 7_[+3]_65 chr2:6987583-6987663 0.0002 21_[+3]_51 chr2:58916104-58916184 0.0002 42_[+3]_30 chr6:160992396-160992476 0.00021 18_[+3]_54 chr7:99321010-99321090 0.00026 69_[+3]_3 chrX:79767992-79768072 0.00026 3_[+3]_69 chr20:33780335-33780415 0.00026 29_[+3]_43 chr12:23052373-23052453 0.00026 52_[+3]_20 chr12:27170367-27170447 0.00026 36_[+3]_36 chr1:28851658-28851738 0.00026 6_[+3]_66 chr10:13747880-13747960 0.00026 67_[+3]_5 chr1:191793075-191793155 0.00032 23_[+3]_49 chr7:105659263-105659343 0.00032 9_[+3]_63 chr5:158555240-158555320 0.00032 23_[+3]_49 chr11:5181581-5181661 0.00032 1_[+3]_71 chr16:8688304-8688384 0.00032 44_[+3]_28 chr14:23366711-23366791 0.00032 57_[+3]_15 chr18:75034043-75034123 0.00037 70_[+3]_2 chr5:70681215-70681295 0.00037 11_[+3]_61 chr15:35459069-35459149 0.00048 5_[+3]_67 chr7:90929381-90929461 0.00048 61_[+3]_11 chr11:75301072-75301152 0.00048 48_[+3]_24 chr9:14395860-14395940 0.00052 70_[+3]_2 chr14:35122453-35122533 0.00054 64_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BBTTATCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BBTTATCT width=8 seqs=72 chr1:57684539-57684619 ( 37) GCTTATCT 1 chr17:57762494-57762574 ( 22) GCTTATCT 1 chr17:11876224-11876304 ( 64) TCTTATCT 1 chr14:30119972-30120052 ( 24) GCTTATCT 1 chr4:154449974-154450054 ( 47) TCTTATCT 1 chr15:69284217-69284297 ( 68) GCTTATCT 1 chr9:131355489-131355569 ( 20) GCTTATCT 1 chr2:173465560-173465640 ( 22) GCTTATCT 1 chr18:968399-968479 ( 10) TCTTATCT 1 chr22:30348250-30348330 ( 14) GCTTATCT 1 chr14:20645714-20645794 ( 34) GCTTATCT 1 chr1:211395920-211396000 ( 42) TCTTATCT 1 chr8:125503809-125503889 ( 30) CCTTATCT 1 chr13:50420834-50420914 ( 73) CCTTATCT 1 chr16:23678666-23678746 ( 23) CCTTATCT 1 chr16:15615927-15616007 ( 52) GGTTATCT 1 chr14:70704601-70704681 ( 64) GGTTATCT 1 chr10:28783483-28783563 ( 10) TGTTATCT 1 chr22:36764683-36764763 ( 41) TGTTATCT 1 chr18:55444154-55444234 ( 28) TGTTATCT 1 chr14:102144511-10214459 ( 2) TGTTATCT 1 chr12:32207226-32207306 ( 65) GGTTATCT 1 chr1:228608954-228609034 ( 67) GGTTATCT 1 chr6:27741814-27741894 ( 35) TGTTATCT 1 chr6:38764353-38764433 ( 14) TGTTATCT 1 chr15:74902920-74903000 ( 44) TGTTATCT 1 chr7:5123120-5123200 ( 14) GGTTATCT 1 chr17:6897205-6897285 ( 35) GTTTATCT 1 chr1:27118200-27118280 ( 46) GTTTATCT 1 chr5:157038183-157038263 ( 21) TTTTATCT 1 chrX:40403735-40403815 ( 12) TTTTATCT 1 chr3:6582816-6582896 ( 2) TTTTATCT 1 chr9:127727082-127727162 ( 37) GTTTATCT 1 chr7:77502866-77502946 ( 60) GTTTATCT 1 chr3:57584946-57585026 ( 63) GTTTATCT 1 chr22:43403778-43403858 ( 10) CTTTATCT 1 chr1:35309372-35309452 ( 18) CTTTATCT 1 chr4:81174849-81174929 ( 5) CTTTATCT 1 chr18:77361346-77361426 ( 60) CTTTATCT 1 chr6:10750103-10750183 ( 49) CTTTATCT 1 chr10:126406630-12640671 ( 41) CTTTATCT 1 chr11:124537650-12453773 ( 53) CTTTATCT 1 chr3:32115896-32115976 ( 20) CTTTATCT 1 chr7:92515498-92515578 ( 3) GCTTATCA 1 chr1:65487630-65487710 ( 4) TCTTATCA 1 chr16:21272972-21273052 ( 64) TCTTATCA 1 chr1:25606338-25606418 ( 42) GCTTATCA 1 chr6:159303106-159303186 ( 8) GCTTATCA 1 chr8:38068322-38068402 ( 8) GCTTATCA 1 chr2:6987583-6987663 ( 22) TCCTATCT 1 chr2:58916104-58916184 ( 43) TCCTATCT 1 chr6:160992396-160992476 ( 19) CCTTATCA 1 chr7:99321010-99321090 ( 70) CCCTATCT 1 chrX:79767992-79768072 ( 4) CCCTATCT 1 chr20:33780335-33780415 ( 30) CCCTATCT 1 chr12:23052373-23052453 ( 53) CCCTATCT 1 chr12:27170367-27170447 ( 37) CCCTATCT 1 chr1:28851658-28851738 ( 7) GGTTATCA 1 chr10:13747880-13747960 ( 68) GGTTATCA 1 chr1:191793075-191793155 ( 24) GTTTATCA 1 chr7:105659263-105659343 ( 10) TGCTATCT 1 chr5:158555240-158555320 ( 24) GGCTATCT 1 chr11:5181581-5181661 ( 2) TTTTATCA 1 chr16:8688304-8688384 ( 45) TGCTATCT 1 chr14:23366711-23366791 ( 58) TGCTATCT 1 chr18:75034043-75034123 ( 71) CGTTATCA 1 chr5:70681215-70681295 ( 12) CGTTATCA 1 chr15:35459069-35459149 ( 6) TGCTATCA 1 chr7:90929381-90929461 ( 62) TGCTATCA 1 chr11:75301072-75301152 ( 49) TGCTATCA 1 chr9:14395860-14395940 ( 71) TTCTATCA 1 chr14:35122453-35122533 ( 65) CTCTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BBTTATCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 1.8e-027 -1281 19 51 52 -1281 73 33 14 -1281 -13 -1281 162 -1281 -1281 -1281 198 200 -1281 -1281 -1281 -1281 -1281 -1281 198 -1281 204 -1281 -1281 0 -1281 -1281 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BBTTATCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 1.8e-027 0.000000 0.277778 0.361111 0.361111 0.000000 0.402778 0.319444 0.277778 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BBTTATCT MEME-3 regular expression -------------------------------------------------------------------------------- [GTC][CGT][TC]TATC[TA] -------------------------------------------------------------------------------- Time 11.56 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCAGA MEME-4 width = 8 sites = 11 llr = 110 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::a:a pos.-specific C 7a:9a:1: probability G :::1::9: matrix T 3::::::: bits 2.0 ** ** * 1.8 ** ** * 1.6 ******* 1.4 ******* Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCAGA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:6584656-6584736 31 1.38e-05 CTATCGAGCA CCACCAGA ATCTGTGGTC chr1:95581319-95581399 31 1.38e-05 CTACTATCAG CCACCAGA GACTAGCATG chr12:32207226-32207306 14 1.38e-05 tctgcacctg ccaccaga aggtatgctg chr1:228608954-228609034 17 1.38e-05 tctgtgcctg ccaccaga aggtacgctg chr11:71416616-71416696 27 1.38e-05 caatctcttc ccaccaga ccccacctct chr5:29796338-29796418 54 1.38e-05 ATAACCTGGA CCACCAGA CACTGCAGAT chr10:75004834-75004914 55 2.81e-05 CCCCTCAAGC TCACCAGA AAGGGTGCAG chr12:108879362-10887944 67 2.81e-05 gaggcaagcc tcaccaga aaccta chr20:9129839-9129919 9 2.81e-05 atcagctc tcaccaga ctcccctttt chr5:178110917-178110997 37 4.14e-05 cagctctgtt ccaccaca ttttctgtga chr7:99659268-99659348 22 5.57e-05 GCTCTGACCC CCAGCAGA TGGTGAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:6584656-6584736 1.4e-05 30_[+4]_42 chr1:95581319-95581399 1.4e-05 30_[+4]_42 chr12:32207226-32207306 1.4e-05 13_[+4]_59 chr1:228608954-228609034 1.4e-05 16_[+4]_56 chr11:71416616-71416696 1.4e-05 26_[+4]_46 chr5:29796338-29796418 1.4e-05 53_[+4]_19 chr10:75004834-75004914 2.8e-05 54_[+4]_18 chr12:108879362-10887944 2.8e-05 66_[+4]_6 chr20:9129839-9129919 2.8e-05 8_[+4]_64 chr5:178110917-178110997 4.1e-05 36_[+4]_36 chr7:99659268-99659348 5.6e-05 21_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCAGA width=8 seqs=11 chr11:6584656-6584736 ( 31) CCACCAGA 1 chr1:95581319-95581399 ( 31) CCACCAGA 1 chr12:32207226-32207306 ( 14) CCACCAGA 1 chr1:228608954-228609034 ( 17) CCACCAGA 1 chr11:71416616-71416696 ( 27) CCACCAGA 1 chr5:29796338-29796418 ( 54) CCACCAGA 1 chr10:75004834-75004914 ( 55) TCACCAGA 1 chr12:108879362-10887944 ( 67) TCACCAGA 1 chr20:9129839-9129919 ( 9) TCACCAGA 1 chr5:178110917-178110997 ( 37) CCACCACA 1 chr7:99659268-99659348 ( 22) CCAGCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 5.1e+003 -1010 158 -1010 11 -1010 204 -1010 -1010 200 -1010 -1010 -1010 -1010 190 -148 -1010 -1010 204 -1010 -1010 200 -1010 -1010 -1010 -1010 -142 184 -1010 200 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 5.1e+003 0.000000 0.727273 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGA MEME-4 regular expression -------------------------------------------------------------------------------- [CT]CACCAGA -------------------------------------------------------------------------------- Time 14.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGAGGCA MEME-5 width = 8 sites = 21 llr = 188 E-value = 6.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGAGGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2::a:::7 pos.-specific C ::::::82 probability G 8aa:aa1: matrix T ::::::11 bits 2.0 *** * 1.8 *** * 1.6 ***** 1.4 ***** Relative 1.2 ******* Entropy 1.0 ******* (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:40357698-40357778 13 1.57e-05 ATGTTTGCGT GGGAGGCA AGCCTCACCC chr3:98302748-98302828 5 1.57e-05 ATAA GGGAGGCA GAAAGAAGCT chr21:46780263-46780343 72 1.57e-05 GAGGGCCCGG GGGAGGCA C chr3:14162498-14162578 3 1.57e-05 ct gggaggca gactggtgtg chr4:145061887-145061967 41 1.57e-05 TGATAGGCAG GGGAGGCA TTTTAAATGA chr4:144826776-144826856 24 1.57e-05 TGATAGGCAG GGGAGGCA TTTTAAATGA chr4:144940566-144940646 14 1.57e-05 TGATAGGCAG GGGAGGCA TTTTAAATGA chr1:35309372-35309452 8 3.10e-05 GGAAGCA GGGAGGCC TCCTTTATCT chr5:131987935-131988015 30 3.10e-05 ccagcacact gggaggcc aagataagag chr7:77502866-77502946 26 3.10e-05 gctgcctcag gggaggcc atcactgttg chr12:108879362-10887944 55 4.66e-05 tgcaaaacca aggaggca agcctcacca chr3:57584946-57585026 44 4.66e-05 gcctctccaa aggaggca gtcagatatg chr6:160992396-160992476 4 4.66e-05 ttg aggaggca gtctgtccct chr16:9171927-9172007 56 6.25e-05 ccagcacttt gggaggct gcggcaggca chr17:72329119-72329199 27 6.25e-05 CCACGCAACT GGGAGGCT GTTGGGAAAG chr2:58916104-58916184 72 9.53e-05 agcacctggg gggaggga c chr1:243269314-243269394 67 9.53e-05 cacacgttgt gggaggga cctggt chr8:37949368-37949448 18 9.53e-05 agctgcgcta gggaggta aagcaggaac chr19:516721-516801 37 9.53e-05 agccgtgcta gggaggta agcaggaact chr10:126406630-12640671 49 1.10e-04 CTCTTTATCT AGGAGGCC TGCAGGCTGG chr7:102082193-102082273 11 1.26e-04 cagctgCAGT GGGAAGCA AGTGAACCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:40357698-40357778 1.6e-05 12_[+5]_60 chr3:98302748-98302828 1.6e-05 4_[+5]_68 chr21:46780263-46780343 1.6e-05 71_[+5]_1 chr3:14162498-14162578 1.6e-05 2_[+5]_70 chr4:145061887-145061967 1.6e-05 40_[+5]_32 chr4:144826776-144826856 1.6e-05 23_[+5]_49 chr4:144940566-144940646 1.6e-05 13_[+5]_59 chr1:35309372-35309452 3.1e-05 7_[+5]_65 chr5:131987935-131988015 3.1e-05 29_[+5]_43 chr7:77502866-77502946 3.1e-05 25_[+5]_47 chr12:108879362-10887944 4.7e-05 54_[+5]_18 chr3:57584946-57585026 4.7e-05 43_[+5]_29 chr6:160992396-160992476 4.7e-05 3_[+5]_69 chr16:9171927-9172007 6.3e-05 55_[+5]_17 chr17:72329119-72329199 6.3e-05 26_[+5]_46 chr2:58916104-58916184 9.5e-05 71_[+5]_1 chr1:243269314-243269394 9.5e-05 66_[+5]_6 chr8:37949368-37949448 9.5e-05 17_[+5]_55 chr19:516721-516801 9.5e-05 36_[+5]_36 chr10:126406630-12640671 0.00011 48_[+5]_24 chr7:102082193-102082273 0.00013 10_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGAGGCA width=8 seqs=21 chr21:40357698-40357778 ( 13) GGGAGGCA 1 chr3:98302748-98302828 ( 5) GGGAGGCA 1 chr21:46780263-46780343 ( 72) GGGAGGCA 1 chr3:14162498-14162578 ( 3) GGGAGGCA 1 chr4:145061887-145061967 ( 41) GGGAGGCA 1 chr4:144826776-144826856 ( 24) GGGAGGCA 1 chr4:144940566-144940646 ( 14) GGGAGGCA 1 chr1:35309372-35309452 ( 8) GGGAGGCC 1 chr5:131987935-131988015 ( 30) GGGAGGCC 1 chr7:77502866-77502946 ( 26) GGGAGGCC 1 chr12:108879362-10887944 ( 55) AGGAGGCA 1 chr3:57584946-57585026 ( 44) AGGAGGCA 1 chr6:160992396-160992476 ( 4) AGGAGGCA 1 chr16:9171927-9172007 ( 56) GGGAGGCT 1 chr17:72329119-72329199 ( 27) GGGAGGCT 1 chr2:58916104-58916184 ( 72) GGGAGGGA 1 chr1:243269314-243269394 ( 67) GGGAGGGA 1 chr8:37949368-37949448 ( 18) GGGAGGTA 1 chr19:516721-516801 ( 37) GGGAGGTA 1 chr10:126406630-12640671 ( 49) AGGAGGCC 1 chr7:102082193-102082273 ( 11) GGGAAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 6.4e+003 -39 -1104 167 -1104 -1104 -1104 198 -1104 -1104 -1104 198 -1104 200 -1104 -1104 -1104 -239 -1104 191 -1104 -1104 -1104 198 -1104 -1104 173 -141 -141 151 -35 -1104 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 6.4e+003 0.190476 0.000000 0.809524 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.047619 0.000000 0.952381 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.809524 0.095238 0.095238 0.714286 0.190476 0.000000 0.095238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGGCA MEME-5 regular expression -------------------------------------------------------------------------------- GGGAGGCA -------------------------------------------------------------------------------- Time 17.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:88491087-88491167 1.72e-02 68_[+2(3.14e-05)]_4 chr7:7082286-7082366 7.60e-02 80 chr3:32115896-32115976 5.34e-03 80 chr4:144940566-144940646 4.02e-03 13_[+5(1.57e-05)]_59 chr17:62919227-62919307 1.59e-02 80 chr19:4328478-4328558 4.95e-01 80 chr14:35122453-35122533 3.33e-03 54_[+2(9.29e-05)]_18 chr8:38068322-38068402 1.30e-02 80 chr2:240008156-240008236 2.62e-01 80 chr20:9129839-9129919 3.54e-03 8_[+4(2.81e-05)]_64 chr19:381061-381141 2.43e-02 80 chr6:160992396-160992476 5.70e-03 3_[+5(4.66e-05)]_69 chr1:25611719-25611799 7.34e-01 80 chr7:5123120-5123200 1.33e-01 13_[+3(7.72e-05)]_59 chr4:103277039-103277119 5.59e-01 80 chr1:211395920-211396000 7.75e-04 41_[+3(3.06e-05)]_31 chr13:44972142-44972222 5.37e-02 80 chr11:62136571-62136651 7.90e-01 80 chr11:62645222-62645302 3.56e-02 63_[+2(9.29e-05)]_9 chr14:23366711-23366791 2.87e-02 80 chr4:25052511-25052591 7.57e-03 28_[+2(1.54e-05)]_44 chr6:80314390-80314470 4.69e-03 31_[+2(7.73e-05)]_41 chr2:42587254-42587334 1.47e-01 80 chr7:24903975-24904055 4.52e-02 62_[+2(9.29e-05)]_10 chr1:95100704-95100784 1.36e-02 80 chr1:160919144-160919224 3.45e-02 80 chr1:6489892-6489972 6.85e-02 80 chr19:516721-516801 1.21e-02 36_[+5(9.53e-05)]_36 chr17:19913652-19913732 5.09e-03 16_[+2(4.66e-05)]_56 chr10:47619240-47619320 1.24e-02 80 chr6:112126190-112126270 1.83e-01 80 chr5:134528287-134528367 6.11e-01 80 chr4:144826776-144826856 3.86e-04 23_[+5(1.57e-05)]_49 chr7:99659268-99659348 4.51e-04 [+1(4.35e-05)]_13_[+4(5.57e-05)]_51 chr6:159303106-159303186 2.93e-03 80 chr9:125209217-125209297 1.51e-01 80 chr9:136159282-136159362 3.57e-01 80 chr11:124537650-12453773 8.71e-02 80 chr14:100038931-10003901 1.12e-02 33_[+1(4.35e-05)]_39 chr19:14502099-14502179 2.69e-01 80 chr1:207020988-207021068 9.60e-02 49_[+2(9.29e-05)]_23 chr19:35411458-35411538 5.89e-01 80 chr17:72329119-72329199 2.49e-04 26_[+5(6.25e-05)]_37_[+1(1.41e-05)]_\ 1 chr11:43974075-43974155 7.25e-01 80 chr9:69491642-69491722 3.32e-03 25_[+2(3.14e-05)]_47 chr1:25606338-25606418 1.10e-02 80 chr15:75987048-75987128 5.79e-03 80 chr16:8688304-8688384 3.23e-02 80 chr9:130188247-130188327 5.36e-02 80 chr17:62971016-62971096 3.63e-02 80 chrX:134996749-134996829 1.85e-01 80 chr13:19398961-19399041 5.32e-04 29_[+2(1.54e-05)]_43 chr14:20645714-20645794 3.87e-03 33_[+3(3.06e-05)]_14_[+1(7.27e-05)]_\ 17 chr15:39432304-39432384 1.43e-02 80 chr8:37949368-37949448 9.66e-05 6_[+1(4.35e-05)]_3_[+5(9.53e-05)]_\ 45_[+2(1.54e-05)]_2 chr4:1884786-1884866 6.11e-02 80 chr22:32022708-32022788 6.43e-02 80 chr10:43140678-43140758 3.24e-02 49_[+1(7.27e-05)]_23 chr8:37939618-37939698 7.59e-04 6_[+1(4.35e-05)]_56_[+2(1.54e-05)]_\ 2 chr11:2000372-2000452 1.00e-02 80 chr16:10591149-10591229 4.46e-01 80 chr16:23678666-23678746 5.74e-02 22_[+3(4.53e-05)]_50 chr1:70005902-70005982 6.94e-02 80 chr16:21272972-21273052 2.82e-02 80 chr13:50420834-50420914 9.62e-03 72_[+3(4.53e-05)] chr12:125369560-12536964 3.80e-02 80 chr7:102082193-102082273 1.22e-02 [+1(7.27e-05)]_72 chr8:101776300-101776380 6.81e-03 8_[+2(3.14e-05)]_64 chr3:57584946-57585026 9.48e-04 43_[+5(4.66e-05)]_29 chr20:32007082-32007162 3.72e-01 80 chr10:126406630-12640671 5.05e-05 19_[+1(4.35e-05)]_53 chr2:174939652-174939732 1.07e-01 80 chr7:104607709-104607789 2.29e-03 3_[+2(7.73e-05)]_69 chr6:164767861-164767941 1.50e-01 80 chr1:16380761-16380841 3.34e-02 80 chr14:76006324-76006404 3.11e-01 80 chr4:145061887-145061967 3.86e-04 40_[+5(1.57e-05)]_32 chr1:65487630-65487710 1.32e-02 80 chr3:14162498-14162578 8.27e-04 2_[+5(1.57e-05)]_32_[+1(7.27e-05)]_\ 30 chr3:177148573-177148653 1.03e-01 80 chr2:208825014-208825094 3.20e-02 80 chr1:243269314-243269394 7.08e-02 66_[+5(9.53e-05)]_6 chr8:93107687-93107767 4.47e-02 80 chr7:77502866-77502946 3.32e-06 13_[+1(1.41e-05)]_4_[+5(3.10e-05)]_\ 47 chr13:95923475-95923555 1.94e-02 29_[+1(1.41e-05)]_43 chr9:4862938-4863018 1.78e-02 67_[+2(4.66e-05)]_5 chr15:74902920-74903000 6.89e-03 43_[+3(7.72e-05)]_29 chr21:46780263-46780343 4.07e-04 16_[+3(7.72e-05)]_28_[+5(1.57e-05)]_\ 11_[+5(1.57e-05)]_1 chr2:73128704-73128784 6.04e-03 80 chr1:25739902-25739982 1.31e-02 23_[+1(4.35e-05)]_49 chr5:32288425-32288505 1.04e-02 80 chr9:127727082-127727162 8.68e-04 80 chr10:134956861-13495694 1.03e-01 80 chr8:49379271-49379351 1.09e-01 80 chr20:37192591-37192671 7.03e-01 80 chr3:6582816-6582896 2.06e-04 80 chr5:176075745-176075825 3.93e-01 80 chr14:24725573-24725653 4.02e-02 80 chr10:13747880-13747960 6.12e-02 80 chr11:34258317-34258397 1.27e-01 80 chr1:228366652-228366732 7.72e-03 80 chr22:30348250-30348330 2.09e-03 13_[+3(3.06e-05)]_8_[+1(5.82e-05)]_\ 43 chr4:69730317-69730397 1.68e-01 80 chr6:10750103-10750183 7.93e-02 80 chr18:968399-968479 2.37e-02 9_[+3(3.06e-05)]_63 chr6:150881285-150881365 2.78e-01 80 chr17:26854451-26854531 6.11e-04 33_[+2(1.54e-05)]_39 chr18:77361346-77361426 5.67e-02 80 chr5:29796338-29796418 7.79e-04 53_[+4(1.38e-05)]_19 chr1:109677200-109677280 1.69e-02 17_[+2(9.29e-05)]_55 chr5:131987935-131988015 9.24e-05 19_[+4(9.82e-05)]_2_[+5(3.10e-05)]_\ 43 chr2:239331048-239331128 1.55e-03 45_[+1(7.27e-05)]_27 chr16:25783258-25783338 3.18e-01 80 chr6:34274092-34274172 2.76e-01 80 chr18:67693002-67693082 5.93e-01 80 chr16:21548249-21548329 4.22e-03 35_[+2(3.14e-05)]_37 chr3:125152086-125152166 3.07e-01 80 chr3:196715537-196715617 5.20e-01 80 chrX:47543019-47543099 2.49e-02 80 chr11:71416616-71416696 7.44e-02 26_[+4(1.38e-05)]_46 chr7:39849956-39850036 6.69e-03 28_[+2(7.73e-05)]_44 chr6:38764353-38764433 2.47e-01 13_[+3(7.72e-05)]_59 chr1:207809074-207809154 3.84e-01 80 chr6:27741814-27741894 1.40e-01 34_[+3(7.72e-05)]_38 chr1:228608954-228609034 2.70e-04 16_[+4(1.38e-05)]_42_[+3(7.72e-05)]_\ 6 chr12:32207226-32207306 1.67e-04 13_[+4(1.38e-05)]_43_[+3(7.72e-05)]_\ 8 chr15:31270652-31270732 1.36e-01 6_[+2(7.73e-05)]_66 chr4:145000055-145000135 3.64e-02 80 chr3:128773652-128773732 4.29e-01 80 chr2:86416675-86416755 5.67e-01 80 chr20:35783245-35783325 1.07e-02 71_[+2(1.54e-05)]_1 chr14:36733984-36734064 2.20e-02 80 chr13:25926496-25926576 5.20e-02 80 chr1:28851658-28851738 3.03e-01 80 chr4:81174849-81174929 5.78e-04 65_[+1(1.41e-05)]_7 chr1:151687996-151688076 5.62e-03 29_[+3(3.06e-05)]_43 chr2:58916104-58916184 4.30e-05 71_[+5(9.53e-05)]_1 chr3:156178157-156178237 7.40e-02 80 chr2:173465560-173465640 1.78e-03 21_[+3(3.06e-05)]_38_[+1(7.27e-05)]_\ 5 chr1:95581319-95581399 2.31e-03 30_[+4(1.38e-05)]_42 chr12:28345231-28345311 4.82e-01 80 chr5:178110917-178110997 4.14e-03 7_[+2(7.73e-05)]_21_[+4(4.14e-05)]_\ 36 chr12:27170367-27170447 7.35e-03 [+1(7.27e-05)]_72 chr2:169990981-169991061 8.24e-02 80 chr14:102144511-10214459 3.09e-02 1_[+3(7.72e-05)]_71 chr18:55444154-55444234 2.10e-01 27_[+3(7.72e-05)]_45 chr9:14395860-14395940 2.49e-01 80 chr3:98302748-98302828 1.12e-02 4_[+5(1.57e-05)]_68 chr5:168240749-168240829 2.72e-03 80 chr3:179093036-179093116 3.65e-01 80 chr16:24719244-24719324 1.02e-01 80 chr12:23052373-23052453 7.52e-02 80 chr4:109035775-109035855 1.01e-02 80 chr20:3890845-3890925 1.73e-01 80 chr22:35608140-35608220 2.58e-03 80 chr9:131355489-131355569 2.01e-02 19_[+3(3.06e-05)]_53 chr22:36764683-36764763 3.28e-04 40_[+3(7.72e-05)]_32 chr15:88214705-88214785 2.33e-02 59_[+1(4.35e-05)]_13 chr7:64405514-64405594 3.93e-02 80 chrX:55054617-55054697 1.38e-02 14_[+2(4.66e-05)]_58 chr1:156430438-156430518 7.92e-01 80 chrX:114557033-114557113 4.25e-03 8_[+1(5.82e-05)]_5_[+2(9.29e-05)]_\ 37_[+1(7.27e-05)]_6 chr18:43733357-43733437 3.43e-03 41_[+1(7.27e-05)]_31 chr2:112191630-112191710 4.29e-01 80 chr7:139935086-139935166 5.68e-02 80 chr16:10437127-10437207 9.50e-03 80 chr12:108879362-10887944 8.70e-05 54_[+5(4.66e-05)]_4_[+4(2.81e-05)]_\ 6 chr11:6584656-6584736 3.06e-03 30_[+4(1.38e-05)]_42 chr10:127293919-12729399 3.26e-01 80 chr2:128300682-128300762 1.91e-02 80 chr20:33780335-33780415 6.54e-02 80 chr15:69284217-69284297 1.08e-02 32_[+3(7.72e-05)]_27_[+3(3.06e-05)]_\ 5 chrX:40403735-40403815 1.30e-03 80 chr21:40357698-40357778 1.05e-03 12_[+5(1.57e-05)]_60 chrX:79767992-79768072 3.93e-01 80 chr19:6682888-6682968 1.24e-01 80 chr5:157038183-157038263 9.79e-02 80 chr5:139990824-139990904 4.41e-01 80 chr16:9171927-9172007 1.92e-03 55_[+5(6.25e-05)]_8_[+2(7.73e-05)]_\ 1 chr4:160116727-160116807 2.29e-01 80 chr6:74238819-74238899 2.30e-01 80 chr3:141567990-141568070 1.29e-02 66_[+2(9.29e-05)]_6 chr6:16263860-16263940 1.21e-01 28_[+2(3.14e-05)]_34_[+2(3.14e-05)]_\ 2 chr1:27118200-27118280 1.34e-02 80 chr5:70681215-70681295 9.78e-02 80 chr22:40586636-40586716 1.28e-04 80 chrX:107801622-107801702 5.26e-02 29_[+2(9.29e-05)]_43 chr4:154449974-154450054 6.43e-04 46_[+3(3.06e-05)]_26 chr11:75301072-75301152 1.81e-03 17_[+1(4.35e-05)]_55 chr2:209436645-209436725 4.57e-02 80 chr7:128790236-128790316 9.81e-03 8_[+1(4.35e-05)]_19_[+1(4.35e-05)]_\ 37 chr1:35602538-35602618 1.46e-01 33_[+2(3.14e-05)]_39 chr1:35309372-35309452 8.03e-05 7_[+5(3.10e-05)]_65 chr7:90929381-90929461 1.72e-03 69_[+2(7.73e-05)]_3 chr10:28783483-28783563 1.72e-02 9_[+3(7.72e-05)]_63 chr1:207693581-207693661 1.56e-01 80 chr17:4152921-4153001 1.82e-02 80 chr11:5181581-5181661 2.71e-03 80 chr14:30119972-30120052 3.73e-03 23_[+3(3.06e-05)]_14_[+1(7.27e-05)]_\ 27 chr1:224058428-224058508 4.49e-02 80 chr5:158555240-158555320 1.53e-01 80 chr10:75004834-75004914 4.41e-02 54_[+4(2.81e-05)]_18 chr7:99432959-99433039 3.89e-02 35_[+2(9.29e-05)]_37 chr14:70704601-70704681 3.23e-04 9_[+1(1.41e-05)]_46_[+3(7.72e-05)]_\ 9 chr6:44439455-44439535 6.84e-02 80 chr13:39573043-39573123 1.38e-01 80 chrX:55041564-55041644 1.18e-02 80 chr15:63402282-63402362 2.47e-02 80 chr17:6897205-6897285 9.18e-02 80 chr17:52938596-52938676 1.96e-02 24_[+2(9.29e-05)]_48 chr2:17899105-17899185 3.45e-02 80 chr7:105659263-105659343 2.75e-01 80 chr22:32291961-32292041 5.90e-03 33_[+2(7.73e-05)]_39 chr8:73046748-73046828 4.74e-03 45_[+2(7.73e-05)]_12_[+1(7.27e-05)]_\ 7 chr13:99628356-99628436 1.78e-01 80 chr4:140364987-140365067 1.78e-03 55_[+1(1.41e-05)]_17 chr17:14064902-14064982 1.62e-03 37_[+1(5.82e-05)]_17_[+2(4.66e-05)]_\ 10 chr1:191793075-191793155 1.86e-01 80 chr22:43403778-43403858 3.90e-02 80 chr21:47740486-47740566 2.10e-02 21_[+2(4.66e-05)]_51 chr20:46153258-46153338 7.24e-02 80 chr12:32201001-32201081 1.67e-03 28_[+2(1.54e-05)]_44 chr8:125503809-125503889 1.94e-02 29_[+3(4.53e-05)]_43 chr16:15615927-15616007 4.84e-03 51_[+3(7.72e-05)]_21 chr4:119495637-119495717 2.09e-01 80 chr5:16418762-16418842 1.48e-01 80 chrX:55143171-55143251 4.44e-01 80 chrX:153119177-153119257 8.60e-03 80 chr15:40189627-40189707 8.79e-01 80 chr17:11876224-11876304 1.68e-01 21_[+3(3.06e-05)]_34_[+3(3.06e-05)]_\ 9 chr17:57762494-57762574 2.99e-02 21_[+3(3.06e-05)]_51 chr5:657866-657946 1.77e-03 39_[+1(7.27e-05)]_33 chr20:37576734-37576814 9.22e-03 80 chr8:98790783-98790863 4.10e-01 80 chr15:35459069-35459149 3.66e-04 44_[+2(3.14e-05)]_28 chr10:14223346-14223426 1.36e-04 5_[+1(4.35e-05)]_49_[+2(1.54e-05)]_\ 10 chr2:172487780-172487860 1.70e-02 35_[+2(3.14e-05)]_37 chr1:61514702-61514782 6.38e-01 80 chr2:6987583-6987663 1.49e-01 80 chr7:92515498-92515578 1.58e-02 80 chr20:20927152-20927232 6.07e-03 14_[+2(3.14e-05)]_58 chr4:111170120-111170200 3.19e-01 80 chr8:144016040-144016120 9.40e-02 80 chr5:176421976-176422056 6.06e-02 80 chr18:75034043-75034123 3.89e-02 80 chr1:57684539-57684619 1.97e-04 36_[+3(3.06e-05)]_36 chr17:57779851-57779931 2.98e-02 80 chr15:93160919-93160999 2.85e-02 80 chr7:99321010-99321090 5.18e-02 80 chr9:100987550-100987630 9.54e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************