******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAL1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:132641541-132641621 1.0000 80 chr1:38028751-38028831 1.0000 80 chr5:134528297-134528377 1.0000 80 chr5:176075737-176075817 1.0000 80 chr16:25228254-25228334 1.0000 80 chr2:46486513-46486593 1.0000 80 chr11:69827688-69827768 1.0000 80 chr7:24903983-24904063 1.0000 80 chr5:32285736-32285816 1.0000 80 chr1:45103764-45103844 1.0000 80 chr3:143734121-143734201 1.0000 80 chr3:10020817-10020897 1.0000 80 chr6:37079931-37080011 1.0000 80 chr5:67724163-67724243 1.0000 80 chr8:101776294-101776374 1.0000 80 chr1:14135273-14135353 1.0000 80 chr17:62291636-62291716 1.0000 80 chr16:87755385-87755465 1.0000 80 chrX:107801628-107801708 1.0000 80 chr6:74238821-74238901 1.0000 80 chr1:93912675-93912755 1.0000 80 chr5:131649951-131650031 1.0000 80 chr20:35783236-35783316 1.0000 80 chr6:69363224-69363304 1.0000 80 chr1:27043841-27043921 1.0000 80 chr22:40586633-40586713 1.0000 80 chr8:125503817-125503897 1.0000 80 chr8:21818128-21818208 1.0000 80 chr5:1105718-1105798 1.0000 80 chr15:61913540-61913620 1.0000 80 chr8:123840539-123840619 1.0000 80 chr16:79434822-79434902 1.0000 80 chr1:75938226-75938306 1.0000 80 chr1:95581296-95581376 1.0000 80 chr1:95100699-95100779 1.0000 80 chr12:53191072-53191152 1.0000 80 chr7:10843484-10843564 1.0000 80 chr3:154897474-154897554 1.0000 80 chr19:50279184-50279264 1.0000 80 chr12:32201001-32201081 1.0000 80 chr7:30936867-30936947 1.0000 80 chrX:10838268-10838348 1.0000 80 chr10:99996793-99996873 1.0000 80 chr14:76006324-76006404 1.0000 80 chr17:58439427-58439507 1.0000 80 chr22:24487878-24487958 1.0000 80 chr15:50886660-50886740 1.0000 80 chr18:755671-755751 1.0000 80 chr11:111781881-11178196 1.0000 80 chr20:3911603-3911683 1.0000 80 chr3:129180861-129180941 1.0000 80 chr3:23850153-23850233 1.0000 80 chr7:127627079-127627159 1.0000 80 chr19:18110561-18110641 1.0000 80 chr17:31835398-31835478 1.0000 80 chr4:103277026-103277106 1.0000 80 chr10:103335821-10333590 1.0000 80 chr11:12214818-12214898 1.0000 80 chr2:84285178-84285258 1.0000 80 chr13:51187586-51187666 1.0000 80 chr9:100705725-100705805 1.0000 80 chr17:4152918-4152998 1.0000 80 chr13:44972153-44972233 1.0000 80 chr12:124654236-12465431 1.0000 80 chr14:55850708-55850788 1.0000 80 chr20:52682384-52682464 1.0000 80 chr18:43303053-43303133 1.0000 80 chr10:52325133-52325213 1.0000 80 chr6:14039428-14039508 1.0000 80 chr20:3890829-3890909 1.0000 80 chr5:131651397-131651477 1.0000 80 chr5:42873107-42873187 1.0000 80 chr8:1708392-1708472 1.0000 80 chr1:229889645-229889725 1.0000 80 chr8:99318580-99318660 1.0000 80 chr19:40512273-40512353 1.0000 80 chr10:13747879-13747959 1.0000 80 chr22:32022700-32022780 1.0000 80 chr10:126277877-12627795 1.0000 80 chr1:117116157-117116237 1.0000 80 chr9:100700563-100700643 1.0000 80 chr3:105333308-105333388 1.0000 80 chr7:136174723-136174803 1.0000 80 chr5:111885592-111885672 1.0000 80 chr9:78974369-78974449 1.0000 80 chr11:63284804-63284884 1.0000 80 chr15:91084196-91084276 1.0000 80 chr17:26432740-26432820 1.0000 80 chr1:230279440-230279520 1.0000 80 chr5:10708813-10708893 1.0000 80 chr10:28783479-28783559 1.0000 80 chr6:133120338-133120418 1.0000 80 chr3:133472764-133472844 1.0000 80 chr11:27223253-27223333 1.0000 80 chr8:86290459-86290539 1.0000 80 chr11:16878940-16879020 1.0000 80 chr16:58010471-58010551 1.0000 80 chr16:58894020-58894100 1.0000 80 chr3:52947083-52947163 1.0000 80 chr8:106744534-106744614 1.0000 80 chr17:76142345-76142425 1.0000 80 chr5:126312701-126312781 1.0000 80 chr15:39809463-39809543 1.0000 80 chr18:33780465-33780545 1.0000 80 chr17:19913638-19913718 1.0000 80 chr20:42167327-42167407 1.0000 80 chr1:70005907-70005987 1.0000 80 chr6:164767859-164767939 1.0000 80 chr7:134519776-134519856 1.0000 80 chr20:5765590-5765670 1.0000 80 chr12:21966229-21966309 1.0000 80 chr15:48872642-48872722 1.0000 80 chr1:40687812-40687892 1.0000 80 chr13:38533645-38533725 1.0000 80 chr8:61242959-61243039 1.0000 80 chr1:109677210-109677290 1.0000 80 chr12:93509074-93509154 1.0000 80 chr21:33108159-33108239 1.0000 80 chr8:145538800-145538880 1.0000 80 chr4:154449954-154450034 1.0000 80 chr15:92021975-92022055 1.0000 80 chr2:9814124-9814204 1.0000 80 chr19:19171110-19171190 1.0000 80 chr7:110634801-110634881 1.0000 80 chr12:127354323-12735440 1.0000 80 chr1:207823476-207823556 1.0000 80 chr3:176379483-176379563 1.0000 80 chr9:116131408-116131488 1.0000 80 chr4:122715793-122715873 1.0000 80 chr11:75301053-75301133 1.0000 80 chr3:150456332-150456412 1.0000 80 chr16:193146-193226 1.0000 80 chr4:146200080-146200160 1.0000 80 chr18:43640367-43640447 1.0000 80 chr6:7899993-7900073 1.0000 80 chrX:129728508-129728588 1.0000 80 chr1:158661853-158661933 1.0000 80 chr11:70588832-70588912 1.0000 80 chr4:81174846-81174926 1.0000 80 chr14:23749580-23749660 1.0000 80 chr7:100108539-100108619 1.0000 80 chr11:16626428-16626508 1.0000 80 chr22:32333506-32333586 1.0000 80 chr3:39430282-39430362 1.0000 80 chr8:22758450-22758530 1.0000 80 chr11:129947712-12994779 1.0000 80 chr6:32256378-32256458 1.0000 80 chr1:57684553-57684633 1.0000 80 chr11:85862550-85862630 1.0000 80 chr18:46599118-46599198 1.0000 80 chr10:51577172-51577252 1.0000 80 chr18:55250667-55250747 1.0000 80 chr22:23449268-23449348 1.0000 80 chr5:76145895-76145975 1.0000 80 chr11:876117-876197 1.0000 80 chr15:73797384-73797464 1.0000 80 chr6:150592742-150592822 1.0000 80 chr2:202305040-202305120 1.0000 80 chrX:109202813-109202893 1.0000 80 chr2:10533330-10533410 1.0000 80 chr3:138941047-138941127 1.0000 80 chr19:12998425-12998505 1.0000 80 chr2:27197328-27197408 1.0000 80 chr3:158461529-158461609 1.0000 80 chr16:12887549-12887629 1.0000 80 chr12:57432990-57433070 1.0000 80 chr1:205225187-205225267 1.0000 80 chr20:9129833-9129913 1.0000 80 chr16:50105131-50105211 1.0000 80 chr1:16380752-16380832 1.0000 80 chr21:40357683-40357763 1.0000 80 chr1:175703075-175703155 1.0000 80 chr1:118153902-118153982 1.0000 80 chr4:10327863-10327943 1.0000 80 chr4:40313901-40313981 1.0000 80 chr1:11757340-11757420 1.0000 80 chr3:152038203-152038283 1.0000 80 chr11:71706836-71706916 1.0000 80 chr12:123872859-12387293 1.0000 80 chr2:127431771-127431851 1.0000 80 chr2:15696591-15696671 1.0000 80 chr8:48469916-48469996 1.0000 80 chr19:907349-907429 1.0000 80 chr16:89785577-89785657 1.0000 80 chr11:82503029-82503109 1.0000 80 chr6:123033615-123033695 1.0000 80 chr22:43579669-43579749 1.0000 80 chr9:37905371-37905451 1.0000 80 chr11:8228037-8228117 1.0000 80 chr4:25052509-25052589 1.0000 80 chr15:40719565-40719645 1.0000 80 chr1:221140292-221140372 1.0000 80 chr15:83471411-83471491 1.0000 80 chr21:46780264-46780344 1.0000 80 chr7:100239171-100239251 1.0000 80 chr9:130877981-130878061 1.0000 80 chr9:100987565-100987645 1.0000 80 chr22:35608126-35608206 1.0000 80 chr11:69720481-69720561 1.0000 80 chr12:106234359-10623443 1.0000 80 chr16:21272964-21273044 1.0000 80 chr7:2775048-2775128 1.0000 80 chr2:28578560-28578640 1.0000 80 chr1:95551154-95551234 1.0000 80 chr2:88550000-88550080 1.0000 80 chr8:23366392-23366472 1.0000 80 chr1:108622426-108622506 1.0000 80 chr6:119646077-119646157 1.0000 80 chr4:82727824-82727904 1.0000 80 chr1:176849123-176849203 1.0000 80 chr6:40683645-40683725 1.0000 80 chr1:156430433-156430513 1.0000 80 chr10:50394817-50394897 1.0000 80 chr8:103405041-103405121 1.0000 80 chr4:1884778-1884858 1.0000 80 chr4:96210538-96210618 1.0000 80 chr17:57762498-57762578 1.0000 80 chr21:35483106-35483186 1.0000 80 chr15:35459065-35459145 1.0000 80 chr7:134345398-134345478 1.0000 80 chr21:31014399-31014479 1.0000 80 chr11:73727502-73727582 1.0000 80 chr1:151948669-151948749 1.0000 80 chr11:74919680-74919760 1.0000 80 chr1:20525603-20525683 1.0000 80 chr6:80314359-80314439 1.0000 80 chr6:139766796-139766876 1.0000 80 chr8:101484590-101484670 1.0000 80 chr20:57596203-57596283 1.0000 80 chr15:39432299-39432379 1.0000 80 chr6:20069483-20069563 1.0000 80 chr15:60907542-60907622 1.0000 80 chr16:70729752-70729832 1.0000 80 chr1:101749217-101749297 1.0000 80 chr6:14477230-14477310 1.0000 80 chr22:37948854-37948934 1.0000 80 chr3:129512920-129513000 1.0000 80 chr4:139592801-139592881 1.0000 80 chr3:42878220-42878300 1.0000 80 chr13:103259120-10325920 1.0000 80 chr9:100702717-100702797 1.0000 80 chr3:16346294-16346374 1.0000 80 chr6:131967569-131967649 1.0000 80 chr7:7140175-7140255 1.0000 80 chr15:29149797-29149877 1.0000 80 chr6:3651320-3651400 1.0000 80 chrX:55054610-55054690 1.0000 80 chr5:121462187-121462267 1.0000 80 chr1:46886044-46886124 1.0000 80 chr5:77883633-77883713 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TAL1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAL1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.253 C 0.245 G 0.256 T 0.246 Background letter frequencies (from file dataset with add-one prior applied): A 0.253 C 0.245 G 0.256 T 0.246 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SWGATAAG MEME-1 width = 8 sites = 128 llr = 949 E-value = 2.2e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif SWGATAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 16:a:a82 pos.-specific C 4::::::2 probability G 3:a:::26 matrix T 14::a::1 bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 ***** Entropy 1.0 ****** (10.7 bits) 0.8 ****** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GT G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:42878220-42878300 39 1.62e-05 GTGAAGACTA CAGATAAG TTTCCTAGGA chr4:25052509-25052589 31 1.62e-05 CTGTTAGGGT CAGATAAG TCCTGGTTAG chr2:202305040-202305120 26 1.62e-05 gctgagaaac cagataag caggttatca chr11:876117-876197 47 1.62e-05 GGTGCAAGGA CAGATAAG CCTCGAGAAA chr18:33780465-33780545 71 1.62e-05 CTGGGGCCTG CAGATAAG AA chr16:58010471-58010551 47 1.62e-05 CTGGGCCCTA CAGATAAG GTAGCTGCTA chr5:10708813-10708893 70 1.62e-05 TTGGGGTCAA CAGATAAG GCT chr15:91084196-91084276 42 1.62e-05 GTGTAAGACA CAGATAAG TAGTCTGTAT chr14:55850708-55850788 56 1.62e-05 CTGCCTGCCA CAGATAAG ACTGTGGCCA chr2:84285178-84285258 67 1.62e-05 GTGGCAGAAG CAGATAAG GAATTT chr11:12214818-12214898 69 1.62e-05 CTGCTCAACT CAGATAAG TAAT chr12:32201001-32201081 29 1.62e-05 ctttacacaa cagataag tggctttaaa chr15:35459065-35459145 49 3.31e-05 GAGCTTAAGA GAGATAAG ACATGACTTT chr6:40683645-40683725 65 3.31e-05 GGTGGTGACG GAGATAAG GGCCCTGT chr1:176849123-176849203 68 3.31e-05 CTGGGCAGAA GAGATAAG CCCTG chr15:40719565-40719645 43 3.31e-05 CTGCTTGTGG GAGATAAG CCCAGCGCTG chr9:37905371-37905451 7 3.31e-05 CAGCAG GAGATAAG ATTGTAAGGG chr22:43579669-43579749 43 3.31e-05 GTGGGATGGG GAGATAAG GGCCTTGGTC chr1:175703075-175703155 27 3.31e-05 CAACTTCATG GAGATAAG AGCTATCTTA chr11:70588832-70588912 30 3.31e-05 CTGGCTGCCG GAGATAAG AGGCAAGGGG chr12:21966229-21966309 47 3.31e-05 ATTGCCCTGT GAGATAAG ATGTCAGGCT chr9:78974369-78974449 71 3.31e-05 GGACCTACTT GAGATAAG GG chr7:136174723-136174803 55 3.31e-05 CTGGGGAAAG GAGATAAG CCACTGTCCC chr20:52682384-52682464 66 3.31e-05 CTGAGGAATA GAGATAAG CTGTTAG chr10:103335821-10333590 54 3.31e-05 agggctccct gagataag gccagacatc chr11:111781881-11178196 44 3.31e-05 GGTGTTGGAA GAGATAAG CAAAGGAGTT chr3:154897474-154897554 67 3.31e-05 ACTGGGGTCA GAGATAAG AGGAAA chr8:101776294-101776374 15 3.31e-05 CTGTGACAGT GAGATAAG GCAAGAACAT chr16:25228254-25228334 32 3.31e-05 CTGTCCCTAG GAGATAAG AGTATCTTGC chr9:132641541-132641621 54 3.31e-05 GCTGCCAGCA GAGATAAG GGCATGGGCC chr1:101749217-101749297 71 4.88e-05 CTGTTAGCCT CTGATAAG CA chr11:8228037-8228117 25 4.88e-05 GCTGCCCCAG CTGATAAG GGCCCGCATT chr1:109677210-109677290 8 4.88e-05 TGGCCTA CTGATAAG AAACCGTGGC chr8:86290459-86290539 66 4.88e-05 gtgtgagaac ctgataag ggaagtg chr18:43303053-43303133 45 4.88e-05 TAGCTGAAGG CTGATAAG TACTATCTGC chr19:18110561-18110641 38 4.88e-05 CTGGCAGCCT CTGATAAG GCCATCCATC chr7:10843484-10843564 39 4.88e-05 CTGGCTGGAG CTGATAAG CCAGCCCATG chrX:107801628-107801708 24 4.88e-05 TGTAAAGGTG CTGATAAG ATATGATGGG chr7:24903983-24904063 55 4.88e-05 atgtgcattg ctgataag ttcccgggtg chr6:3651320-3651400 66 6.53e-05 TGCAGCAGCA GTGATAAG GAGAAGT chr15:39432299-39432379 18 6.53e-05 TCGCCCTGCA GTGATAAG AGCACAGCTG chr18:55250667-55250747 31 6.53e-05 ctgcaaaata gtgataag gctacttctg chr7:110634801-110634881 56 6.53e-05 CTGGCTGACA GTGATAAG GTGTGACTCA chr6:80314359-80314439 63 1.14e-04 gtgttggggg cagataac ttgtcttttt chr1:151948669-151948749 41 1.14e-04 gtgtgttcca tagataag cCTGGGCTTA chr21:35483106-35483186 69 1.14e-04 tgcattgtgc tagataag cttc chr2:28578560-28578640 61 1.14e-04 GCTGCCACTG TAGATAAG GTTGCCTGGG chr6:123033615-123033695 23 1.14e-04 TGGAGAGAGG TAGATAAG GCATTTGGTT chr2:15696591-15696671 49 1.14e-04 ATGGACATTC AAGATAAG CCTGAGAATA chr1:16380752-16380832 5 1.14e-04 TTAG AAGATAAG GCGGGGTTGG chr6:32256378-32256458 40 1.14e-04 TGGATGATGA TAGATAAG AGTGTCTTTA chrX:129728508-129728588 41 1.14e-04 CTGCTAGGGG TAGATAAG AGCTGCAGGT chr4:122715793-122715873 38 1.14e-04 ctgtaaaaga cagataaC GAATACTggt chr20:42167327-42167407 13 1.14e-04 GGTCTGCAGT TAGATAAG ACACTGTAAC chr10:99996793-99996873 58 1.14e-04 CTGCACTGGC CAGATAAC CAGTGACAGA chrX:55054610-55054690 22 1.30e-04 CTGCAGACCA CAGATAAA GTTGCCAGAG chr17:19913638-19913718 31 1.30e-04 CTGCAGGCAG CAGATAAA GTGTTTTTTG chr11:63284804-63284884 62 1.30e-04 CTAGAGCTTC CAGATAAA GATGGACATC chr6:14477230-14477310 44 1.46e-04 CTGCCCTGGT GAGATAAC ATTTCACGAT chr12:123872859-12387293 66 1.46e-04 aggtttcagt gagataac gGCAAGA chr4:146200080-146200160 53 1.46e-04 TGTGGACAAT GAGATAAC CCCCGCAAAG chr3:105333308-105333388 64 1.46e-04 TGCTTGGAAA GAGATAAC ATGTTTCCA chr7:7140175-7140255 3 1.79e-04 TA GAGATAAA CAGCAGACTC chr22:37948854-37948934 18 1.79e-04 CTGGGTGACA CAGATAGG GACGAAGAGC chr8:101484590-101484670 62 1.79e-04 CTGGCTAGGT GAGATAAA GCGATCCCTG chr4:154449954-154450034 21 1.79e-04 GTGTGGGCCA CAGATAGG GTAGACTTTG chr18:755671-755751 69 1.79e-04 ctgcagaata gagataaa gaaa chrX:10838268-10838348 73 1.79e-04 TTGCCAGGGA GAGATAAA chr1:27043841-27043921 70 1.79e-04 ctggtgctaa gagataaa gtg chr17:62291636-62291716 32 1.79e-04 CTGTCATTCG CAGATAGG AGCACAGATG chr1:93912675-93912755 64 1.96e-04 CCTTTCCATG GAGATAGG CCAGGAAGT chr4:1884778-1884858 13 2.43e-04 tggagtaaaa ttgataag ttgtgttgtt chr1:108622426-108622506 54 2.43e-04 GCTGCAGGCA ATGATAAG ATGCTCTGCT chr8:48469916-48469996 46 2.43e-04 CTGTTCTGAA CTGATAAC AAGAAGGGCA chr11:85862550-85862630 33 2.43e-04 AGCCCCTAAA TTGATAAG CACAGGGTGG chr12:93509074-93509154 43 2.43e-04 ATGGAGCTTA TTGATAAG CACCTGTGGA chr1:230279440-230279520 21 2.43e-04 TGTTGCTGCT CTGATAAC TGAAAGGGTA chr1:117116157-117116237 50 2.43e-04 CTGCAAGGAG TTGATAAG GATGCAGCCA chr1:229889645-229889725 43 2.43e-04 CTGGCTGCTG TTGATAAG AGCCAGCCAT chr6:14039428-14039508 50 2.43e-04 CTGGGCTGCA TTGATAAG GAGCTGGACA chr13:51187586-51187666 61 2.43e-04 acaggcagaa atgataag ttaccgcaca chr15:50886660-50886740 72 2.43e-04 CTGGTTTCTC ATGATAAG C chr7:30936867-30936947 64 2.43e-04 CCTGTGGCCC TTGATAAG GGTGATCCT chr2:46486513-46486593 66 2.43e-04 GTGTTAATGA CTGATAAC ACTTCAT chr6:150592742-150592822 70 2.59e-04 CATATtgtca ctgataaa ctg chr6:7899993-7900073 50 2.59e-04 CTGCTCCTCT CTGATAAA AAGGAAACAA chr3:176379483-176379563 70 2.59e-04 GTGTTTTTTA CTGATAAA AAT chr9:100987565-100987645 64 2.90e-04 GGTATGGGGA CAGATAAT GGCTTAATG chr3:158461529-158461609 73 3.54e-04 TGTGGCAGCC TAGATAAC chr18:46599118-46599198 73 3.54e-04 TGAAGCACAA CTGATAGG chr8:145538800-145538880 60 3.54e-04 CACTGGCCAA CTGATAGG GAGAGGCACA chr9:100705725-100705805 57 3.54e-04 TGTACACATA TAGATAAC ATGTTCTATA chr1:45103764-45103844 59 3.54e-04 CTGGCCAGGA CTGATAGG CCCTAACTCT chr12:106234359-10623443 62 4.03e-04 TGTTGCTCTG AAGATAAA GCATGTCCTA chr22:35608126-35608206 51 4.03e-04 CCACCTAACA AAGATAAA ATGTCCTCAG chr3:138941047-138941127 26 4.03e-04 CGGCAGAGAG GAGATAAT TTCAATCTGC chr8:1708392-1708472 67 4.03e-04 ctgtgcaccc aagataaa tgtttg chr6:74238821-74238901 61 4.03e-04 ctgtaaaaag gagataat aataactatt chr13:103259120-10325920 28 4.68e-04 CTGTCATGGG CAGATAGC AGCCATTAAT chr6:20069483-20069563 55 4.68e-04 CTGGACGGTT TAGATAGG GCTGCTGGTC chr1:70005907-70005987 36 4.68e-04 GGTGAGGACT AAGATAGG GTCGAGTTAT chr22:32022700-32022780 46 4.68e-04 TTGGCCTGCA CAGATAGC GGAAGGAAGA chr11:75301053-75301133 50 4.84e-04 CTGCTCTGGC CAGATAGA CACAGTTGGC chr1:46886044-46886124 35 5.16e-04 CTGTTTACAG GAGATAGC TGCCATGTCC chr1:205225187-205225267 31 5.16e-04 CTGGCTCCCA GAGATAGC ACTGGGCCCT chrX:109202813-109202893 36 5.16e-04 ctgtaaaagg gagatagc agtgtagtac chr4:139592801-139592881 43 5.63e-04 CTGAGACTAA GAGATAGA GAAAACATGG chr1:95551154-95551234 60 5.63e-04 TGTGAGAGTG GAGATAGA GGGTACTATC chr1:75938226-75938306 58 5.63e-04 GTGTTATCTT ATGATAAC ATTCAACTCA chr9:100702717-100702797 72 6.11e-04 TGTCTCTGGC ATGATAAA C chr4:40313901-40313981 34 6.11e-04 ATGGAGCCAG TTGATAAA GAGGGTATCA chr8:22758450-22758530 67 6.11e-04 tgacaggagg atgataaa atgttt chr16:79434822-79434902 23 6.11e-04 AGGGAGAGGC ATGATAAA CACAGCAGGG chr22:40586633-40586713 54 6.11e-04 CTGCCCTGGT GTGATAAT GCTATCAGCT chr20:57596203-57596283 41 6.43e-04 CTGAAGCTGG AAGATAAT ACGGAAAGGG chr15:48872642-48872722 62 6.43e-04 ATGACTTGGC AAGATAAT GCTCAGTCTA chr1:95581296-95581376 7 6.43e-04 ATATCA AAGATAAT GATGGTGCAT chr20:5765590-5765670 62 6.90e-04 ATGTTCTGGC CTGATAGC TCCTCTCAAG chr5:131649951-131650031 55 6.90e-04 CCTCCCCACA CTGATAGC CCCATCTCCT chr5:67724163-67724243 42 6.90e-04 CTGCAGGCTC CTGATAGC TTAGGCAGAA chr3:150456332-150456412 18 7.06e-04 CCTGCCAACA CTGATAGA CAGACACATG chr7:2775048-2775128 57 7.38e-04 GTGCTCCGCC CAGATAGT ACGGACGCAA chr11:129947712-12994779 37 7.86e-04 GCTGAAAGTA AAGATAGC CCCTTATCAG chr1:20525603-20525683 45 8.35e-04 ACAGTGGCAG GAGATAGT CCTTTTTATC chr8:123840539-123840619 1 8.35e-04 . AAGATAGA GAAAGTATCT chr20:3890829-3890909 22 8.82e-04 AAGGTGGTTT CTGATAGT GCTGTGGCCT chr7:134345398-134345478 62 9.13e-04 CTGCTTGCAT TTGATAGC TTATTTTGCA chr3:152038203-152038283 52 9.13e-04 GCTTCCTGAT ATGATAGC TGTATATACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:42878220-42878300 1.6e-05 38_[+1]_34 chr4:25052509-25052589 1.6e-05 30_[+1]_42 chr2:202305040-202305120 1.6e-05 25_[+1]_47 chr11:876117-876197 1.6e-05 46_[+1]_26 chr18:33780465-33780545 1.6e-05 70_[+1]_2 chr16:58010471-58010551 1.6e-05 46_[+1]_26 chr5:10708813-10708893 1.6e-05 69_[+1]_3 chr15:91084196-91084276 1.6e-05 41_[+1]_31 chr14:55850708-55850788 1.6e-05 55_[+1]_17 chr2:84285178-84285258 1.6e-05 66_[+1]_6 chr11:12214818-12214898 1.6e-05 68_[+1]_4 chr12:32201001-32201081 1.6e-05 28_[+1]_44 chr15:35459065-35459145 3.3e-05 48_[+1]_24 chr6:40683645-40683725 3.3e-05 64_[+1]_8 chr1:176849123-176849203 3.3e-05 67_[+1]_5 chr15:40719565-40719645 3.3e-05 42_[+1]_30 chr9:37905371-37905451 3.3e-05 6_[+1]_66 chr22:43579669-43579749 3.3e-05 42_[+1]_30 chr1:175703075-175703155 3.3e-05 26_[+1]_46 chr11:70588832-70588912 3.3e-05 29_[+1]_43 chr12:21966229-21966309 3.3e-05 46_[+1]_26 chr9:78974369-78974449 3.3e-05 70_[+1]_2 chr7:136174723-136174803 3.3e-05 54_[+1]_18 chr20:52682384-52682464 3.3e-05 65_[+1]_7 chr10:103335821-10333590 3.3e-05 53_[+1]_19 chr11:111781881-11178196 3.3e-05 43_[+1]_29 chr3:154897474-154897554 3.3e-05 66_[+1]_6 chr8:101776294-101776374 3.3e-05 14_[+1]_58 chr16:25228254-25228334 3.3e-05 31_[+1]_41 chr9:132641541-132641621 3.3e-05 53_[+1]_19 chr1:101749217-101749297 4.9e-05 70_[+1]_2 chr11:8228037-8228117 4.9e-05 24_[+1]_48 chr1:109677210-109677290 4.9e-05 7_[+1]_65 chr8:86290459-86290539 4.9e-05 65_[+1]_7 chr18:43303053-43303133 4.9e-05 44_[+1]_28 chr19:18110561-18110641 4.9e-05 37_[+1]_35 chr7:10843484-10843564 4.9e-05 38_[+1]_34 chrX:107801628-107801708 4.9e-05 23_[+1]_49 chr7:24903983-24904063 4.9e-05 54_[+1]_18 chr6:3651320-3651400 6.5e-05 65_[+1]_7 chr15:39432299-39432379 6.5e-05 17_[+1]_55 chr18:55250667-55250747 6.5e-05 30_[+1]_42 chr7:110634801-110634881 6.5e-05 55_[+1]_17 chr6:80314359-80314439 0.00011 62_[+1]_10 chr1:151948669-151948749 0.00011 40_[+1]_32 chr21:35483106-35483186 0.00011 68_[+1]_4 chr2:28578560-28578640 0.00011 60_[+1]_12 chr6:123033615-123033695 0.00011 22_[+1]_50 chr2:15696591-15696671 0.00011 48_[+1]_24 chr1:16380752-16380832 0.00011 4_[+1]_68 chr6:32256378-32256458 0.00011 39_[+1]_33 chrX:129728508-129728588 0.00011 40_[+1]_32 chr4:122715793-122715873 0.00011 37_[+1]_35 chr20:42167327-42167407 0.00011 12_[+1]_60 chr10:99996793-99996873 0.00011 57_[+1]_15 chrX:55054610-55054690 0.00013 21_[+1]_51 chr17:19913638-19913718 0.00013 30_[+1]_42 chr11:63284804-63284884 0.00013 61_[+1]_11 chr6:14477230-14477310 0.00015 43_[+1]_29 chr12:123872859-12387293 0.00015 65_[+1]_7 chr4:146200080-146200160 0.00015 52_[+1]_20 chr3:105333308-105333388 0.00015 63_[+1]_9 chr7:7140175-7140255 0.00018 2_[+1]_70 chr22:37948854-37948934 0.00018 17_[+1]_55 chr8:101484590-101484670 0.00018 61_[+1]_11 chr4:154449954-154450034 0.00018 20_[+1]_52 chr18:755671-755751 0.00018 68_[+1]_4 chrX:10838268-10838348 0.00018 72_[+1] chr1:27043841-27043921 0.00018 69_[+1]_3 chr17:62291636-62291716 0.00018 31_[+1]_41 chr1:93912675-93912755 0.0002 63_[+1]_9 chr4:1884778-1884858 0.00024 12_[+1]_60 chr1:108622426-108622506 0.00024 53_[+1]_19 chr8:48469916-48469996 0.00024 45_[+1]_27 chr11:85862550-85862630 0.00024 32_[+1]_40 chr12:93509074-93509154 0.00024 42_[+1]_30 chr1:230279440-230279520 0.00024 20_[+1]_52 chr1:117116157-117116237 0.00024 49_[+1]_23 chr1:229889645-229889725 0.00024 42_[+1]_30 chr6:14039428-14039508 0.00024 49_[+1]_23 chr13:51187586-51187666 0.00024 60_[+1]_12 chr15:50886660-50886740 0.00024 71_[+1]_1 chr7:30936867-30936947 0.00024 63_[+1]_9 chr2:46486513-46486593 0.00024 65_[+1]_7 chr6:150592742-150592822 0.00026 69_[+1]_3 chr6:7899993-7900073 0.00026 49_[+1]_23 chr3:176379483-176379563 0.00026 69_[+1]_3 chr9:100987565-100987645 0.00029 63_[+1]_9 chr3:158461529-158461609 0.00035 72_[+1] chr18:46599118-46599198 0.00035 72_[+1] chr8:145538800-145538880 0.00035 59_[+1]_13 chr9:100705725-100705805 0.00035 56_[+1]_16 chr1:45103764-45103844 0.00035 58_[+1]_14 chr12:106234359-10623443 0.0004 61_[+1]_11 chr22:35608126-35608206 0.0004 50_[+1]_22 chr3:138941047-138941127 0.0004 25_[+1]_47 chr8:1708392-1708472 0.0004 66_[+1]_6 chr6:74238821-74238901 0.0004 60_[+1]_12 chr13:103259120-10325920 0.00047 27_[+1]_45 chr6:20069483-20069563 0.00047 54_[+1]_18 chr1:70005907-70005987 0.00047 35_[+1]_37 chr22:32022700-32022780 0.00047 45_[+1]_27 chr11:75301053-75301133 0.00048 49_[+1]_23 chr1:46886044-46886124 0.00052 34_[+1]_38 chr1:205225187-205225267 0.00052 30_[+1]_42 chrX:109202813-109202893 0.00052 35_[+1]_37 chr4:139592801-139592881 0.00056 42_[+1]_30 chr1:95551154-95551234 0.00056 59_[+1]_13 chr1:75938226-75938306 0.00056 57_[+1]_15 chr9:100702717-100702797 0.00061 71_[+1]_1 chr4:40313901-40313981 0.00061 33_[+1]_39 chr8:22758450-22758530 0.00061 66_[+1]_6 chr16:79434822-79434902 0.00061 22_[+1]_50 chr22:40586633-40586713 0.00061 53_[+1]_19 chr20:57596203-57596283 0.00064 40_[+1]_32 chr15:48872642-48872722 0.00064 61_[+1]_11 chr1:95581296-95581376 0.00064 6_[+1]_66 chr20:5765590-5765670 0.00069 61_[+1]_11 chr5:131649951-131650031 0.00069 54_[+1]_18 chr5:67724163-67724243 0.00069 41_[+1]_31 chr3:150456332-150456412 0.00071 17_[+1]_55 chr7:2775048-2775128 0.00074 56_[+1]_16 chr11:129947712-12994779 0.00079 36_[+1]_36 chr1:20525603-20525683 0.00084 44_[+1]_28 chr8:123840539-123840619 0.00084 [+1]_72 chr20:3890829-3890909 0.00088 21_[+1]_51 chr7:134345398-134345478 0.00091 61_[+1]_11 chr3:152038203-152038283 0.00091 51_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SWGATAAG width=8 seqs=128 chr3:42878220-42878300 ( 39) CAGATAAG 1 chr4:25052509-25052589 ( 31) CAGATAAG 1 chr2:202305040-202305120 ( 26) CAGATAAG 1 chr11:876117-876197 ( 47) CAGATAAG 1 chr18:33780465-33780545 ( 71) CAGATAAG 1 chr16:58010471-58010551 ( 47) CAGATAAG 1 chr5:10708813-10708893 ( 70) CAGATAAG 1 chr15:91084196-91084276 ( 42) CAGATAAG 1 chr14:55850708-55850788 ( 56) CAGATAAG 1 chr2:84285178-84285258 ( 67) CAGATAAG 1 chr11:12214818-12214898 ( 69) CAGATAAG 1 chr12:32201001-32201081 ( 29) CAGATAAG 1 chr15:35459065-35459145 ( 49) GAGATAAG 1 chr6:40683645-40683725 ( 65) GAGATAAG 1 chr1:176849123-176849203 ( 68) GAGATAAG 1 chr15:40719565-40719645 ( 43) GAGATAAG 1 chr9:37905371-37905451 ( 7) GAGATAAG 1 chr22:43579669-43579749 ( 43) GAGATAAG 1 chr1:175703075-175703155 ( 27) GAGATAAG 1 chr11:70588832-70588912 ( 30) GAGATAAG 1 chr12:21966229-21966309 ( 47) GAGATAAG 1 chr9:78974369-78974449 ( 71) GAGATAAG 1 chr7:136174723-136174803 ( 55) GAGATAAG 1 chr20:52682384-52682464 ( 66) GAGATAAG 1 chr10:103335821-10333590 ( 54) GAGATAAG 1 chr11:111781881-11178196 ( 44) GAGATAAG 1 chr3:154897474-154897554 ( 67) GAGATAAG 1 chr8:101776294-101776374 ( 15) GAGATAAG 1 chr16:25228254-25228334 ( 32) GAGATAAG 1 chr9:132641541-132641621 ( 54) GAGATAAG 1 chr1:101749217-101749297 ( 71) CTGATAAG 1 chr11:8228037-8228117 ( 25) CTGATAAG 1 chr1:109677210-109677290 ( 8) CTGATAAG 1 chr8:86290459-86290539 ( 66) CTGATAAG 1 chr18:43303053-43303133 ( 45) CTGATAAG 1 chr19:18110561-18110641 ( 38) CTGATAAG 1 chr7:10843484-10843564 ( 39) CTGATAAG 1 chrX:107801628-107801708 ( 24) CTGATAAG 1 chr7:24903983-24904063 ( 55) CTGATAAG 1 chr6:3651320-3651400 ( 66) GTGATAAG 1 chr15:39432299-39432379 ( 18) GTGATAAG 1 chr18:55250667-55250747 ( 31) GTGATAAG 1 chr7:110634801-110634881 ( 56) GTGATAAG 1 chr6:80314359-80314439 ( 63) CAGATAAC 1 chr1:151948669-151948749 ( 41) TAGATAAG 1 chr21:35483106-35483186 ( 69) TAGATAAG 1 chr2:28578560-28578640 ( 61) TAGATAAG 1 chr6:123033615-123033695 ( 23) TAGATAAG 1 chr2:15696591-15696671 ( 49) AAGATAAG 1 chr1:16380752-16380832 ( 5) AAGATAAG 1 chr6:32256378-32256458 ( 40) TAGATAAG 1 chrX:129728508-129728588 ( 41) TAGATAAG 1 chr4:122715793-122715873 ( 38) CAGATAAC 1 chr20:42167327-42167407 ( 13) TAGATAAG 1 chr10:99996793-99996873 ( 58) CAGATAAC 1 chrX:55054610-55054690 ( 22) CAGATAAA 1 chr17:19913638-19913718 ( 31) CAGATAAA 1 chr11:63284804-63284884 ( 62) CAGATAAA 1 chr6:14477230-14477310 ( 44) GAGATAAC 1 chr12:123872859-12387293 ( 66) GAGATAAC 1 chr4:146200080-146200160 ( 53) GAGATAAC 1 chr3:105333308-105333388 ( 64) GAGATAAC 1 chr7:7140175-7140255 ( 3) GAGATAAA 1 chr22:37948854-37948934 ( 18) CAGATAGG 1 chr8:101484590-101484670 ( 62) GAGATAAA 1 chr4:154449954-154450034 ( 21) CAGATAGG 1 chr18:755671-755751 ( 69) GAGATAAA 1 chrX:10838268-10838348 ( 73) GAGATAAA 1 chr1:27043841-27043921 ( 70) GAGATAAA 1 chr17:62291636-62291716 ( 32) CAGATAGG 1 chr1:93912675-93912755 ( 64) GAGATAGG 1 chr4:1884778-1884858 ( 13) TTGATAAG 1 chr1:108622426-108622506 ( 54) ATGATAAG 1 chr8:48469916-48469996 ( 46) CTGATAAC 1 chr11:85862550-85862630 ( 33) TTGATAAG 1 chr12:93509074-93509154 ( 43) TTGATAAG 1 chr1:230279440-230279520 ( 21) CTGATAAC 1 chr1:117116157-117116237 ( 50) TTGATAAG 1 chr1:229889645-229889725 ( 43) TTGATAAG 1 chr6:14039428-14039508 ( 50) TTGATAAG 1 chr13:51187586-51187666 ( 61) ATGATAAG 1 chr15:50886660-50886740 ( 72) ATGATAAG 1 chr7:30936867-30936947 ( 64) TTGATAAG 1 chr2:46486513-46486593 ( 66) CTGATAAC 1 chr6:150592742-150592822 ( 70) CTGATAAA 1 chr6:7899993-7900073 ( 50) CTGATAAA 1 chr3:176379483-176379563 ( 70) CTGATAAA 1 chr9:100987565-100987645 ( 64) CAGATAAT 1 chr3:158461529-158461609 ( 73) TAGATAAC 1 chr18:46599118-46599198 ( 73) CTGATAGG 1 chr8:145538800-145538880 ( 60) CTGATAGG 1 chr9:100705725-100705805 ( 57) TAGATAAC 1 chr1:45103764-45103844 ( 59) CTGATAGG 1 chr12:106234359-10623443 ( 62) AAGATAAA 1 chr22:35608126-35608206 ( 51) AAGATAAA 1 chr3:138941047-138941127 ( 26) GAGATAAT 1 chr8:1708392-1708472 ( 67) AAGATAAA 1 chr6:74238821-74238901 ( 61) GAGATAAT 1 chr13:103259120-10325920 ( 28) CAGATAGC 1 chr6:20069483-20069563 ( 55) TAGATAGG 1 chr1:70005907-70005987 ( 36) AAGATAGG 1 chr22:32022700-32022780 ( 46) CAGATAGC 1 chr11:75301053-75301133 ( 50) CAGATAGA 1 chr1:46886044-46886124 ( 35) GAGATAGC 1 chr1:205225187-205225267 ( 31) GAGATAGC 1 chrX:109202813-109202893 ( 36) GAGATAGC 1 chr4:139592801-139592881 ( 43) GAGATAGA 1 chr1:95551154-95551234 ( 60) GAGATAGA 1 chr1:75938226-75938306 ( 58) ATGATAAC 1 chr9:100702717-100702797 ( 72) ATGATAAA 1 chr4:40313901-40313981 ( 34) TTGATAAA 1 chr8:22758450-22758530 ( 67) ATGATAAA 1 chr16:79434822-79434902 ( 23) ATGATAAA 1 chr22:40586633-40586713 ( 54) GTGATAAT 1 chr20:57596203-57596283 ( 41) AAGATAAT 1 chr15:48872642-48872722 ( 62) AAGATAAT 1 chr1:95581296-95581376 ( 7) AAGATAAT 1 chr20:5765590-5765670 ( 62) CTGATAGC 1 chr5:131649951-131650031 ( 55) CTGATAGC 1 chr5:67724163-67724243 ( 42) CTGATAGC 1 chr3:150456332-150456412 ( 18) CTGATAGA 1 chr7:2775048-2775128 ( 57) CAGATAGT 1 chr11:129947712-12994779 ( 37) AAGATAGC 1 chr1:20525603-20525683 ( 45) GAGATAGT 1 chr8:123840539-123840619 ( 1) AAGATAGA 1 chr20:3890829-3890909 ( 22) CTGATAGT 1 chr7:134345398-134345478 ( 62) TTGATAGC 1 chr3:152038203-152038283 ( 52) ATGATAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.88954 E= 2.2e-079 -77 64 33 -73 136 -1364 -1364 51 -1364 -1364 197 -1364 198 -1364 -1364 -1364 -1364 -1364 -1364 202 198 -1364 -1364 -1364 163 -1364 -22 -1364 -49 -39 112 -166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 128 E= 2.2e-079 0.148438 0.382812 0.320312 0.148438 0.648438 0.000000 0.000000 0.351562 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.781250 0.000000 0.218750 0.000000 0.179688 0.187500 0.554688 0.078125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAG MEME-1 regular expression -------------------------------------------------------------------------------- [CG][AT]GATA[AG]G -------------------------------------------------------------------------------- Time 4.94 secs. ******************************************************************************** ******************************************************************************** MOTIF STTATCTB MEME-2 width = 8 sites = 120 llr = 906 E-value = 6.4e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif STTATCTB MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::a::31 pos.-specific C 41:::a:3 probability G 3::::::4 matrix T 29a:a:72 bits 2.0 **** 1.8 **** 1.6 **** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ****** (10.9 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel CTTATCTG consensus G AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:73727502-73727582 40 1.42e-05 CCTAGGGGGC CTTATCTG CAAGGCCCAG chr11:69720481-69720561 16 1.42e-05 CTACGGCGGG CTTATCTG GGCCTGCAGG chr2:27197328-27197408 1 1.42e-05 . CTTATCTG TGAGACTGCC chr15:73797384-73797464 7 1.42e-05 TTTTTC CTTATCTG CTTGGGAAAC chr19:19171110-19171190 21 1.42e-05 GTGGTTCTGC CTTATCTG TCCCTCCCAC chr4:154449954-154450034 68 1.42e-05 GCAATGGTTT CTTATCTG ACCAT chr20:5765590-5765670 14 1.42e-05 CTCCGGGGCA CTTATCTG CCGAGTCCAG chr3:52947083-52947163 8 1.42e-05 aaggTCT CTTATCTG TTACTTGCAG chr10:126277877-12627795 5 1.42e-05 ATTC CTTATCTG TTCCAACCAC chr19:40512273-40512353 4 1.42e-05 TCT CTTATCTG TGCTCAAACA chr20:3911603-3911683 9 1.42e-05 TCAAGGAC CTTATCTG CCAGGGACAG chr22:24487878-24487958 32 1.42e-05 CTGCCGCAAA CTTATCTG TGTTGAGCAG chrX:10838268-10838348 8 1.42e-05 CCTAAAG CTTATCTG TGCTGGACAC chr5:134528297-134528377 72 1.42e-05 TGTCTCCTGG CTTATCTG A chr11:74919680-74919760 32 2.79e-05 CCAGCCCAGT CTTATCTC TCCCCACAGC chr17:57762498-57762578 19 2.79e-05 AGAATTGCTG CTTATCTC TTCAAAGGCA chr6:119646077-119646157 58 2.79e-05 tgtgacaacc cttatctc cagacactgg chr1:221140292-221140372 6 2.79e-05 AATGG CTTATCTC ACTCTGCAGT chr16:89785577-89785657 39 2.79e-05 CCACCACCTG CTTATCTC TGAGATACAC chr1:205225187-205225267 47 2.79e-05 GCACTGGGCC CTTATCTC TTCACACCTT chr5:76145895-76145975 54 2.79e-05 GAGCATTCTC CTTATCTC ATCTGCACAG chr5:42873107-42873187 22 2.79e-05 CTGTGGCTCG CTTATCTC ATGCTTGCAG chr12:53191072-53191152 19 2.79e-05 AAGTTAGCTG CTTATCTC TCCAGGACAG chr8:21818128-21818208 6 2.79e-05 CCATC CTTATCTC ATGCACGCCA chr15:29149797-29149877 23 4.27e-05 GGCTCCCCTC GTTATCTG CAGCACGCAG chr4:96210538-96210618 12 4.27e-05 GCTTCATGTT GTTATCTG CTGCTGGCCA chr21:46780264-46780344 17 4.27e-05 GGGAGGTCTG GTTATCTG CTGGTAATCC chr8:99318580-99318660 9 4.27e-05 TTTGTCCT GTTATCTG GATCCACAGC chr3:16346294-16346374 21 7.07e-05 GTTACCCTTT CTTATCTT TGTTGTTGCA chr9:130877981-130878061 43 7.07e-05 AGGAGGAGCC GTTATCTC CCATGGCAGT chr16:50105131-50105211 8 7.07e-05 ACAGTTT CTTATCTT CAGTCAGCAG chr16:12887549-12887629 9 7.07e-05 CCCCTACC CTTATCTT AGCAGAGACA chr17:76142345-76142425 28 7.07e-05 CGGCCTCCAG GTTATCTC CCCACTGCAG chr17:26432740-26432820 22 7.07e-05 GAAAGCCTTT GTTATCTC TTGCTAGCAG chr13:51187586-51187666 17 7.07e-05 gagtactgca gttatctc cgttatacag chr17:31835398-31835478 35 7.07e-05 GTGTGACAGC GTTATCTC GGGCTACCAC chr19:50279184-50279264 28 7.07e-05 tagggaaggc gttatctc ccctaaccag chr15:61913540-61913620 42 7.07e-05 ATTAGCCACA GTTATCTC TCCCATACAG chr16:87755385-87755465 19 7.07e-05 ATGCATGGAC GTTATCTC CTGACCTCCA chr7:100239171-100239251 43 8.53e-05 AGGAGGGCCC CTTATCAG TCCTGGCAGG chr15:83471411-83471491 16 8.53e-05 CTATGGGCCT CTTATCAG CCAGCAACAG chr2:127431771-127431851 28 8.53e-05 AACTGAGCCT CTTATCAG TCAGCTGCAG chr1:11757340-11757420 18 8.53e-05 gactgtctcc cttatcag tggggacacc chr11:129947712-12994779 47 8.53e-05 AAGATAGCCC CTTATCAG GAAAGTGCCA chr15:39809463-39809543 43 8.53e-05 TGCCATTTTG CTTATCAG ACAAAGGCAT chr16:58894020-58894100 6 8.53e-05 CCGTT CTTATCAG ACACACCACC chr3:133472764-133472844 17 8.53e-05 GGGGCATATG CTTATCAG AGAAACACAG chr8:145538800-145538880 17 9.96e-05 GCTTTGCTGC TTTATCTG GCAGCAACAG chr1:230279440-230279520 50 9.96e-05 TGTGCTTGTC TTTATCTG CCACACGCAC chr5:1105718-1105798 18 9.96e-05 AAGCCAGAGG TTTATCTG CACAGAACAG chr16:70729752-70729832 31 1.14e-04 GGGAGAGGCT CTTATCAC AGCGCTGCAG chr7:2775048-2775128 13 1.14e-04 AGCCAGTGCT CTTATCAC CACAGGACAC chr5:121462187-121462267 4 1.42e-04 ACG GTTATCTT TGAAGCTCAC chr11:71706836-71706916 17 1.42e-04 CTCAGGCTGT GTTATCTT ACACTGGCAG chr3:152038203-152038283 5 1.42e-04 GTAT GTTATCTT GTGCAGGCAG chr22:23449268-23449348 19 1.42e-04 GCGGCAGCCT GTTATCTT GTTTAAACAG chr22:32333506-32333586 14 1.42e-04 CTCAGATCCC TTTATCTC CTGAGTCAGG chr7:100108539-100108619 49 1.42e-04 AATTGTCTCC TTTATCTC CTCTACCAGA chr21:33108159-33108239 66 1.42e-04 GACTTCCATC TTTATCTC TCCAGGC chr6:133120338-133120418 39 1.42e-04 gattataatg tttatctc gtagggcggc chr10:28783479-28783559 15 1.42e-04 gataacctct gttatctt cagggcccac chr1:75938226-75938306 50 1.42e-04 AAGACCATGT GTTATCTT ATGATAACAT chr10:50394817-50394897 45 1.71e-04 TGATTAAAAc cttatcta taacatgcag chr6:123033615-123033695 38 1.71e-04 AAGGCATTTG GTTATCAG GGGAGACCAG chr2:202305040-202305120 37 1.71e-04 agataagcag gttatcag aaCACCCATA chr10:51577172-51577252 36 1.71e-04 ggagacgtct cttatcta ggctaaacag chr1:57684553-57684633 24 1.71e-04 AGGGGAGGGG CTTATCTA GCCACAGCAG chr1:207823476-207823556 58 1.71e-04 gaggcagctg gttatcag tggtaatgaa chr1:70005907-70005987 49 1.71e-04 ATAGGGTCGA GTTATCAG GGAAGACAAC chr7:127627079-127627159 34 1.71e-04 GCACTGGTAT GTTATCAG AAAAGACAGC chr3:129180861-129180941 30 1.71e-04 ttccagttcc cttatcta aaaggagcat chr8:125503817-125503897 23 1.71e-04 CACTGAATGC CTTATCTA AAGTGCCAGG chr5:77883633-77883713 32 2.14e-04 AGTGCAAATC CTTATCAT CTCCCTTCTG chr6:131967569-131967649 40 2.14e-04 CTTGTTTTTT CTTATCAT AGTTACCCTC chr21:31014399-31014479 12 2.14e-04 AGCCTTATTT CTTATCAT CAAGTCCAGA chr16:21272964-21273044 73 2.14e-04 GCAACACAGT CTTATCAT chr8:61242959-61243039 31 2.14e-04 ctgaaccaac cttatcat actagtgcac chr11:16626428-16626508 10 2.28e-04 CCAATTCTT TTTATCTT AAAGCTCTGC chr4:81174846-81174926 9 2.28e-04 TCGCATGC TTTATCTT CTAGGGTCAG chr4:82727824-82727904 3 2.72e-04 aa attatctc ctggaaacag chr3:176379483-176379563 35 2.72e-04 TCTGGTAGGT ATTATCTC AATGTTACAG chr5:126312701-126312781 27 2.72e-04 AGGCACAGGT TTTATCAG TTTTGGCCAG chr13:44972153-44972233 22 2.72e-04 CCGATTAGTC ATTATCTC CTCTGTGGTC chr10:103335821-10333590 10 2.72e-04 accacagtc attatctc acagttccac chr1:95581296-95581376 24 2.72e-04 TGATGGTGCA TTTATCAG GAAAGAACAG chr1:14135273-14135353 36 2.72e-04 gagacctgcc tttatcag acagtCGCAG chr11:27223253-27223333 12 3.00e-04 TGGCCTTGAC TTTATCAC AGCAAACAGG chr9:100700563-100700643 40 3.00e-04 TTCTACTATC TTTATCAC ACTGCACAGG chr10:13747879-13747959 70 3.00e-04 TTCCTACCGG GTTATCAT GGG chr1:95100699-95100779 27 3.00e-04 GGAGCAGCTG GTTATCAT GAACCATGTA chr2:46486513-46486593 10 3.29e-04 cCTTCTCTT CTTATCAA CCCATTCTCA chr1:20525603-20525683 57 3.57e-04 GATAGTCCTT TTTATCTA CAATAAACAG chr2:9814124-9814204 10 3.57e-04 TGTcaacca tttatcta acacctaccc chr13:38533645-38533725 3 3.57e-04 ga attatctt tatgtgcagc chr15:48872642-48872722 9 3.57e-04 AGCCAAGT ATTATCTT CTGCTCCAAG chr3:10020817-10020897 2 3.57e-04 C TTTATCTA CAGGGCGCAA chr6:3651320-3651400 22 3.86e-04 CGAAGCCCTC ATTATCAG CCGCCTAAAT chr19:12998425-12998505 18 3.86e-04 CCCGCCAAGC ATTATCAG ACACCCCAGA chr18:43640367-43640447 1 4.00e-04 . tttatcat ttgaaacaca chr3:158461529-158461609 5 4.44e-04 GTAT GTTATCAA GGCAAACCAA chr1:156430433-156430513 2 4.87e-04 a gctatctc attcctgtgt chr9:100987565-100987645 11 4.87e-04 GCCATCTGGT GCTATCTC CTAGAGCCCA chr1:118153902-118153982 46 4.87e-04 TAGCACCGCT GCTATCTC CTGTGCCCAG chr11:63284804-63284884 29 4.87e-04 accaTAAACC ATTATCTA GAGTACACAG chr12:32201001-32201081 14 4.87e-04 ttcaactaaa cctatctt tacacaacag chr5:32285736-32285816 48 4.87e-04 CTACCCCCAC ATTATCTA AGAACCTCAC chr5:131649951-131650031 21 5.01e-04 CACCCCAGAG CCTATCAG CTAAGCACAG chr2:10533330-10533410 28 5.45e-04 GACTGTAATC TCTATCTG TCACTGGGAA chr8:1708392-1708472 24 5.45e-04 aaagaaccag tttatcaa agtgcttagc chr12:21966229-21966309 12 5.59e-04 TGCAGTTAAT CCTATCAC TTTTGTGCAG chr1:95551154-95551234 19 5.87e-04 GAACAAGCTA TCTATCTC ATGCAACAGT chr12:106234359-10623443 13 5.87e-04 GGGCAGAGCT GCTATCTT TGGGCTCCAG chr1:175703075-175703155 36 5.87e-04 GGAGATAAGA GCTATCTT ATTTGGTCAG chr11:75301053-75301133 69 6.16e-04 ACAGTTGGCT GCTATCAG TAGG chr5:131651397-131651477 43 6.16e-04 CTCAGGGCTT GCTATCAG CCTGGGGCCA chr22:40586633-40586713 62 6.16e-04 GTGTGATAAT GCTATCAG CTGGTTGTGG chr6:37079931-37080011 41 6.16e-04 ggtctatgct cctatcta aggcatacac chr12:57432990-57433070 33 6.74e-04 AAATGATGCC ATTATCAA AGTAGTCCAC chr1:40687812-40687892 42 6.74e-04 CATATGTTTT ACTATCTG TAACCAGAGT chr18:43303053-43303133 54 6.74e-04 GCTGATAAGT ACTATCTG CACATCCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:73727502-73727582 1.4e-05 39_[+2]_33 chr11:69720481-69720561 1.4e-05 15_[+2]_57 chr2:27197328-27197408 1.4e-05 [+2]_72 chr15:73797384-73797464 1.4e-05 6_[+2]_66 chr19:19171110-19171190 1.4e-05 20_[+2]_52 chr4:154449954-154450034 1.4e-05 67_[+2]_5 chr20:5765590-5765670 1.4e-05 13_[+2]_59 chr3:52947083-52947163 1.4e-05 7_[+2]_65 chr10:126277877-12627795 1.4e-05 4_[+2]_68 chr19:40512273-40512353 1.4e-05 3_[+2]_69 chr20:3911603-3911683 1.4e-05 8_[+2]_64 chr22:24487878-24487958 1.4e-05 31_[+2]_41 chrX:10838268-10838348 1.4e-05 7_[+2]_65 chr5:134528297-134528377 1.4e-05 71_[+2]_1 chr11:74919680-74919760 2.8e-05 31_[+2]_41 chr17:57762498-57762578 2.8e-05 18_[+2]_54 chr6:119646077-119646157 2.8e-05 57_[+2]_15 chr1:221140292-221140372 2.8e-05 5_[+2]_67 chr16:89785577-89785657 2.8e-05 38_[+2]_34 chr1:205225187-205225267 2.8e-05 46_[+2]_26 chr5:76145895-76145975 2.8e-05 53_[+2]_19 chr5:42873107-42873187 2.8e-05 21_[+2]_51 chr12:53191072-53191152 2.8e-05 18_[+2]_54 chr8:21818128-21818208 2.8e-05 5_[+2]_67 chr15:29149797-29149877 4.3e-05 22_[+2]_50 chr4:96210538-96210618 4.3e-05 11_[+2]_61 chr21:46780264-46780344 4.3e-05 16_[+2]_56 chr8:99318580-99318660 4.3e-05 8_[+2]_64 chr3:16346294-16346374 7.1e-05 20_[+2]_52 chr9:130877981-130878061 7.1e-05 42_[+2]_30 chr16:50105131-50105211 7.1e-05 7_[+2]_65 chr16:12887549-12887629 7.1e-05 8_[+2]_64 chr17:76142345-76142425 7.1e-05 27_[+2]_45 chr17:26432740-26432820 7.1e-05 21_[+2]_51 chr13:51187586-51187666 7.1e-05 16_[+2]_56 chr17:31835398-31835478 7.1e-05 34_[+2]_38 chr19:50279184-50279264 7.1e-05 27_[+2]_45 chr15:61913540-61913620 7.1e-05 41_[+2]_31 chr16:87755385-87755465 7.1e-05 18_[+2]_54 chr7:100239171-100239251 8.5e-05 42_[+2]_30 chr15:83471411-83471491 8.5e-05 15_[+2]_57 chr2:127431771-127431851 8.5e-05 27_[+2]_45 chr1:11757340-11757420 8.5e-05 17_[+2]_55 chr11:129947712-12994779 8.5e-05 46_[+2]_26 chr15:39809463-39809543 8.5e-05 42_[+2]_30 chr16:58894020-58894100 8.5e-05 5_[+2]_67 chr3:133472764-133472844 8.5e-05 16_[+2]_56 chr8:145538800-145538880 0.0001 16_[+2]_56 chr1:230279440-230279520 0.0001 49_[+2]_23 chr5:1105718-1105798 0.0001 17_[+2]_55 chr16:70729752-70729832 0.00011 30_[+2]_42 chr7:2775048-2775128 0.00011 12_[+2]_60 chr5:121462187-121462267 0.00014 3_[+2]_69 chr11:71706836-71706916 0.00014 16_[+2]_56 chr3:152038203-152038283 0.00014 4_[+2]_68 chr22:23449268-23449348 0.00014 18_[+2]_54 chr22:32333506-32333586 0.00014 13_[+2]_59 chr7:100108539-100108619 0.00014 48_[+2]_24 chr21:33108159-33108239 0.00014 65_[+2]_7 chr6:133120338-133120418 0.00014 38_[+2]_34 chr10:28783479-28783559 0.00014 14_[+2]_58 chr1:75938226-75938306 0.00014 49_[+2]_23 chr10:50394817-50394897 0.00017 44_[+2]_28 chr6:123033615-123033695 0.00017 37_[+2]_35 chr2:202305040-202305120 0.00017 36_[+2]_36 chr10:51577172-51577252 0.00017 35_[+2]_37 chr1:57684553-57684633 0.00017 23_[+2]_49 chr1:207823476-207823556 0.00017 57_[+2]_15 chr1:70005907-70005987 0.00017 48_[+2]_24 chr7:127627079-127627159 0.00017 33_[+2]_39 chr3:129180861-129180941 0.00017 29_[+2]_43 chr8:125503817-125503897 0.00017 22_[+2]_50 chr5:77883633-77883713 0.00021 31_[+2]_41 chr6:131967569-131967649 0.00021 39_[+2]_33 chr21:31014399-31014479 0.00021 11_[+2]_61 chr16:21272964-21273044 0.00021 72_[+2] chr8:61242959-61243039 0.00021 30_[+2]_42 chr11:16626428-16626508 0.00023 9_[+2]_63 chr4:81174846-81174926 0.00023 8_[+2]_64 chr4:82727824-82727904 0.00027 2_[+2]_70 chr3:176379483-176379563 0.00027 34_[+2]_38 chr5:126312701-126312781 0.00027 26_[+2]_46 chr13:44972153-44972233 0.00027 21_[+2]_51 chr10:103335821-10333590 0.00027 9_[+2]_63 chr1:95581296-95581376 0.00027 23_[+2]_49 chr1:14135273-14135353 0.00027 35_[+2]_37 chr11:27223253-27223333 0.0003 11_[+2]_61 chr9:100700563-100700643 0.0003 39_[+2]_33 chr10:13747879-13747959 0.0003 69_[+2]_3 chr1:95100699-95100779 0.0003 26_[+2]_46 chr2:46486513-46486593 0.00033 9_[+2]_63 chr1:20525603-20525683 0.00036 56_[+2]_16 chr2:9814124-9814204 0.00036 9_[+2]_63 chr13:38533645-38533725 0.00036 2_[+2]_70 chr15:48872642-48872722 0.00036 8_[+2]_64 chr3:10020817-10020897 0.00036 1_[+2]_71 chr6:3651320-3651400 0.00039 21_[+2]_51 chr19:12998425-12998505 0.00039 17_[+2]_55 chr18:43640367-43640447 0.0004 [+2]_72 chr3:158461529-158461609 0.00044 4_[+2]_68 chr1:156430433-156430513 0.00049 1_[+2]_71 chr9:100987565-100987645 0.00049 10_[+2]_62 chr1:118153902-118153982 0.00049 45_[+2]_27 chr11:63284804-63284884 0.00049 28_[+2]_44 chr12:32201001-32201081 0.00049 13_[+2]_59 chr5:32285736-32285816 0.00049 47_[+2]_25 chr5:131649951-131650031 0.0005 20_[+2]_52 chr2:10533330-10533410 0.00054 27_[+2]_45 chr8:1708392-1708472 0.00054 23_[+2]_49 chr12:21966229-21966309 0.00056 11_[+2]_61 chr1:95551154-95551234 0.00059 18_[+2]_54 chr12:106234359-10623443 0.00059 12_[+2]_60 chr1:175703075-175703155 0.00059 35_[+2]_37 chr11:75301053-75301133 0.00062 68_[+2]_4 chr5:131651397-131651477 0.00062 42_[+2]_30 chr22:40586633-40586713 0.00062 61_[+2]_11 chr6:37079931-37080011 0.00062 40_[+2]_32 chr12:57432990-57433070 0.00067 32_[+2]_40 chr1:40687812-40687892 0.00067 41_[+2]_31 chr18:43303053-43303133 0.00067 53_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STTATCTB width=8 seqs=120 chr11:73727502-73727582 ( 40) CTTATCTG 1 chr11:69720481-69720561 ( 16) CTTATCTG 1 chr2:27197328-27197408 ( 1) CTTATCTG 1 chr15:73797384-73797464 ( 7) CTTATCTG 1 chr19:19171110-19171190 ( 21) CTTATCTG 1 chr4:154449954-154450034 ( 68) CTTATCTG 1 chr20:5765590-5765670 ( 14) CTTATCTG 1 chr3:52947083-52947163 ( 8) CTTATCTG 1 chr10:126277877-12627795 ( 5) CTTATCTG 1 chr19:40512273-40512353 ( 4) CTTATCTG 1 chr20:3911603-3911683 ( 9) CTTATCTG 1 chr22:24487878-24487958 ( 32) CTTATCTG 1 chrX:10838268-10838348 ( 8) CTTATCTG 1 chr5:134528297-134528377 ( 72) CTTATCTG 1 chr11:74919680-74919760 ( 32) CTTATCTC 1 chr17:57762498-57762578 ( 19) CTTATCTC 1 chr6:119646077-119646157 ( 58) CTTATCTC 1 chr1:221140292-221140372 ( 6) CTTATCTC 1 chr16:89785577-89785657 ( 39) CTTATCTC 1 chr1:205225187-205225267 ( 47) CTTATCTC 1 chr5:76145895-76145975 ( 54) CTTATCTC 1 chr5:42873107-42873187 ( 22) CTTATCTC 1 chr12:53191072-53191152 ( 19) CTTATCTC 1 chr8:21818128-21818208 ( 6) CTTATCTC 1 chr15:29149797-29149877 ( 23) GTTATCTG 1 chr4:96210538-96210618 ( 12) GTTATCTG 1 chr21:46780264-46780344 ( 17) GTTATCTG 1 chr8:99318580-99318660 ( 9) GTTATCTG 1 chr3:16346294-16346374 ( 21) CTTATCTT 1 chr9:130877981-130878061 ( 43) GTTATCTC 1 chr16:50105131-50105211 ( 8) CTTATCTT 1 chr16:12887549-12887629 ( 9) CTTATCTT 1 chr17:76142345-76142425 ( 28) GTTATCTC 1 chr17:26432740-26432820 ( 22) GTTATCTC 1 chr13:51187586-51187666 ( 17) GTTATCTC 1 chr17:31835398-31835478 ( 35) GTTATCTC 1 chr19:50279184-50279264 ( 28) GTTATCTC 1 chr15:61913540-61913620 ( 42) GTTATCTC 1 chr16:87755385-87755465 ( 19) GTTATCTC 1 chr7:100239171-100239251 ( 43) CTTATCAG 1 chr15:83471411-83471491 ( 16) CTTATCAG 1 chr2:127431771-127431851 ( 28) CTTATCAG 1 chr1:11757340-11757420 ( 18) CTTATCAG 1 chr11:129947712-12994779 ( 47) CTTATCAG 1 chr15:39809463-39809543 ( 43) CTTATCAG 1 chr16:58894020-58894100 ( 6) CTTATCAG 1 chr3:133472764-133472844 ( 17) CTTATCAG 1 chr8:145538800-145538880 ( 17) TTTATCTG 1 chr1:230279440-230279520 ( 50) TTTATCTG 1 chr5:1105718-1105798 ( 18) TTTATCTG 1 chr16:70729752-70729832 ( 31) CTTATCAC 1 chr7:2775048-2775128 ( 13) CTTATCAC 1 chr5:121462187-121462267 ( 4) GTTATCTT 1 chr11:71706836-71706916 ( 17) GTTATCTT 1 chr3:152038203-152038283 ( 5) GTTATCTT 1 chr22:23449268-23449348 ( 19) GTTATCTT 1 chr22:32333506-32333586 ( 14) TTTATCTC 1 chr7:100108539-100108619 ( 49) TTTATCTC 1 chr21:33108159-33108239 ( 66) TTTATCTC 1 chr6:133120338-133120418 ( 39) TTTATCTC 1 chr10:28783479-28783559 ( 15) GTTATCTT 1 chr1:75938226-75938306 ( 50) GTTATCTT 1 chr10:50394817-50394897 ( 45) CTTATCTA 1 chr6:123033615-123033695 ( 38) GTTATCAG 1 chr2:202305040-202305120 ( 37) GTTATCAG 1 chr10:51577172-51577252 ( 36) CTTATCTA 1 chr1:57684553-57684633 ( 24) CTTATCTA 1 chr1:207823476-207823556 ( 58) GTTATCAG 1 chr1:70005907-70005987 ( 49) GTTATCAG 1 chr7:127627079-127627159 ( 34) GTTATCAG 1 chr3:129180861-129180941 ( 30) CTTATCTA 1 chr8:125503817-125503897 ( 23) CTTATCTA 1 chr5:77883633-77883713 ( 32) CTTATCAT 1 chr6:131967569-131967649 ( 40) CTTATCAT 1 chr21:31014399-31014479 ( 12) CTTATCAT 1 chr16:21272964-21273044 ( 73) CTTATCAT 1 chr8:61242959-61243039 ( 31) CTTATCAT 1 chr11:16626428-16626508 ( 10) TTTATCTT 1 chr4:81174846-81174926 ( 9) TTTATCTT 1 chr4:82727824-82727904 ( 3) ATTATCTC 1 chr3:176379483-176379563 ( 35) ATTATCTC 1 chr5:126312701-126312781 ( 27) TTTATCAG 1 chr13:44972153-44972233 ( 22) ATTATCTC 1 chr10:103335821-10333590 ( 10) ATTATCTC 1 chr1:95581296-95581376 ( 24) TTTATCAG 1 chr1:14135273-14135353 ( 36) TTTATCAG 1 chr11:27223253-27223333 ( 12) TTTATCAC 1 chr9:100700563-100700643 ( 40) TTTATCAC 1 chr10:13747879-13747959 ( 70) GTTATCAT 1 chr1:95100699-95100779 ( 27) GTTATCAT 1 chr2:46486513-46486593 ( 10) CTTATCAA 1 chr1:20525603-20525683 ( 57) TTTATCTA 1 chr2:9814124-9814204 ( 10) TTTATCTA 1 chr13:38533645-38533725 ( 3) ATTATCTT 1 chr15:48872642-48872722 ( 9) ATTATCTT 1 chr3:10020817-10020897 ( 2) TTTATCTA 1 chr6:3651320-3651400 ( 22) ATTATCAG 1 chr19:12998425-12998505 ( 18) ATTATCAG 1 chr18:43640367-43640447 ( 1) TTTATCAT 1 chr3:158461529-158461609 ( 5) GTTATCAA 1 chr1:156430433-156430513 ( 2) GCTATCTC 1 chr9:100987565-100987645 ( 11) GCTATCTC 1 chr1:118153902-118153982 ( 46) GCTATCTC 1 chr11:63284804-63284884 ( 29) ATTATCTA 1 chr12:32201001-32201081 ( 14) CCTATCTT 1 chr5:32285736-32285816 ( 48) ATTATCTA 1 chr5:131649951-131650031 ( 21) CCTATCAG 1 chr2:10533330-10533410 ( 28) TCTATCTG 1 chr8:1708392-1708472 ( 24) TTTATCAA 1 chr12:21966229-21966309 ( 12) CCTATCAC 1 chr1:95551154-95551234 ( 19) TCTATCTC 1 chr12:106234359-10623443 ( 13) GCTATCTT 1 chr1:175703075-175703155 ( 36) GCTATCTT 1 chr11:75301053-75301133 ( 69) GCTATCAG 1 chr5:131651397-131651477 ( 43) GCTATCAG 1 chr22:40586633-40586713 ( 62) GCTATCAG 1 chr6:37079931-37080011 ( 41) CCTATCTA 1 chr12:57432990-57433070 ( 33) ATTATCAA 1 chr1:40687812-40687892 ( 42) ACTATCTG 1 chr18:43303053-43303133 ( 54) ACTATCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.51941 E= 6.4e-076 -122 82 15 -49 -1355 -88 -1355 181 -1355 -1355 -1355 202 198 -1355 -1355 -1355 -1355 -1355 -1355 202 -1355 203 -1355 -1355 36 -1355 -1355 145 -102 25 58 -30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 120 E= 6.4e-076 0.108333 0.433333 0.283333 0.175000 0.000000 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.325000 0.000000 0.000000 0.675000 0.125000 0.291667 0.383333 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTB MEME-2 regular expression -------------------------------------------------------------------------------- [CG]TTATC[TA][GCT] -------------------------------------------------------------------------------- Time 8.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGCWGSH MEME-3 width = 8 sites = 79 llr = 598 E-value = 6.3e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGCWGSH MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6::6::2 pos.-specific C a::a:274 probability G ::a::83: matrix T :4::4::4 bits 2.0 * ** 1.8 * ** 1.6 * ** 1.4 * ** Relative 1.2 * ** * Entropy 1.0 ******* (10.9 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGCC consensus T T GT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCWGSH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:21272964-21273044 5 3.03e-05 ATGC CAGCAGCT CCCTTCTTGT chr22:35608126-35608206 66 3.03e-05 AAAATGTCCT CAGCAGCT GGAAGGC chr19:907349-907429 39 3.03e-05 TTCTCCACCC CAGCAGCT GGACAGGGCC chr1:11757340-11757420 68 3.03e-05 GCTGGCAGAT CAGCAGCT CCATG chr20:9129833-9129913 38 3.03e-05 cttttctcca cagcagcc tgatctccac chr11:16626428-16626508 70 3.03e-05 AATCTGCCCT CAGCAGCC CCG chr1:117116157-117116237 34 3.03e-05 CTGGCCAAGC CAGCAGCT GCAAGGAGTT chr5:42873107-42873187 37 3.03e-05 CTCATGCTTG CAGCAGCC TAGAGAGAGC chr20:52682384-52682464 50 3.03e-05 GGCTGGTGCA CAGCAGCT GAGGAATAGA chr17:4152918-4152998 50 3.03e-05 TAATCCACAA CAGCAGCC ACTGCATCTT chrX:10838268-10838348 56 3.03e-05 ATGGATTGTT CAGCAGCT TGCCAGGGAG chr22:40586633-40586713 29 3.03e-05 GGGCCATGGC CAGCAGCT CTCTGGCCTG chr11:69827688-69827768 69 3.03e-05 GCTGGGCTGA CAGCAGCT GCCT chr16:25228254-25228334 69 3.03e-05 GCAGGTTTCC CAGCAGCT CAGG chr7:134345398-134345478 49 5.97e-05 CAGCATCCCT CAGCTGCT TGCATTTGAT chr2:28578560-28578640 49 5.97e-05 ACTGTGGCCA CAGCTGCC ACTGTAGATA chr15:40719565-40719645 30 5.97e-05 CGTGAACACG CAGCTGCT TGTGGGAGAT chr1:118153902-118153982 18 5.97e-05 GGCTTGCTCA CAGCTGCT CAGCTAGAGC chr4:81174846-81174926 69 5.97e-05 CTCACCCAAG CAGCTGCC AGTG chr11:75301053-75301133 37 5.97e-05 ATATGGAACA CAGCTGCT CTGGCCAGAT chr11:12214818-12214898 56 5.97e-05 GCTGCAGGAA CAGCTGCT CAACTCAGAT chr9:132641541-132641621 42 5.97e-05 TGGTGAGCGG CAGCTGCC AGCAGAGATA chr16:70729752-70729832 43 8.92e-05 TATCACAGCG CTGCAGCC CGTTGGGGGA chr3:138941047-138941127 40 8.92e-05 TAATTTCAAT CTGCAGCC TCCAGATTGA chr6:7899993-7900073 22 8.92e-05 TGTCAAGGGG CTGCAGCC AGGCATGTAT chr6:3651320-3651400 2 1.05e-04 C CAGCAGCA AACGAAGCCC chr15:83471411-83471491 34 1.05e-04 CCAGCAACAG CAGCAGCA GGTCTCCCCA chr16:50105131-50105211 20 1.05e-04 TATCTTCAGT CAGCAGCA ATTACAGTGG chr8:22758450-22758530 37 1.05e-04 tcagccttga cagcagca agaagtgaca chr7:10843484-10843564 58 1.05e-04 CAGCCCATGG CAGCAGCA CTGCTGGCCT chr7:7140175-7140255 35 1.65e-04 GTATCTTGAA CAGCAGGC CTCAGCTTGC chr20:57596203-57596283 23 1.65e-04 GGCAGGAGCC CTGCTGCT CTGAAGCTGG chr1:109677210-109677290 46 1.65e-04 GCTGCTGCAC CTGCTGCT TTTGCCGTTT chr3:133472764-133472844 32 1.65e-04 CAGAGAAACA CAGCAGGC TGTGTGCAGC chr3:105333308-105333388 50 1.65e-04 TCAACAGCAA CTGCTGCT TGGAAAGAGA chr7:127627079-127627159 10 1.65e-04 TATCTTTAT CAGCAGGC AGCACTGCAC chr3:129512920-129513000 27 1.80e-04 ATTCAGATGA CAGCTGCA GTTTTAGGGG chr1:108622426-108622506 42 1.80e-04 CACAGGAGCC CAGCTGCA GGCAATGATA chr2:127431771-127431851 37 1.80e-04 TCTTATCAGT CAGCTGCA GGGGTACCTG chr12:21966229-21966309 73 1.80e-04 CTCAGAATGG CAGCTGCA chr10:99996793-99996873 45 1.80e-04 TGCGGACTCC CAGCTGCA CTGGCCAGAT chr6:40683645-40683725 12 2.11e-04 TGAGCTCAGG CAGCTGGT GCAAGTGATA chr11:8228037-8228117 52 2.11e-04 TGTTCGGGGA CAGCTGGC AGCCCGATAA chr11:27223253-27223333 60 2.11e-04 CAGACACTTG CAGCTGGC TGGGAAATGA chr9:100987565-100987645 49 2.57e-04 GGGGCCAGTG CTGCAGGT ATGGGGACAG chr1:221140292-221140372 42 2.57e-04 CAAATGCAGG CTGCAGGT CACCCCGGCT chrX:129728508-129728588 51 2.57e-04 TAGATAAGAG CTGCAGGT CACCAGCACC chr17:19913638-19913718 21 2.57e-04 ACTGTAGGAG CTGCAGGC AGCAGATAAA chr17:76142345-76142425 40 2.57e-04 TATCTCCCCA CTGCAGGC ACCCACCCAG chr5:10708813-10708893 36 2.57e-04 GACTCCTACA CTGCAGGC CCATATAGGA chr9:100700563-100700643 19 2.57e-04 TGGACCACAA CTGCAGGC TAATTCTACT chr17:31835398-31835478 53 2.57e-04 GGGCTACCAC CTGCAGGC CATGGAAGCC chr5:67724163-67724243 32 2.57e-04 TCCAGGCTGC CTGCAGGC TCCTGATAGC chr11:876117-876197 20 2.88e-04 CGCCAGAGCT CAGCAGGA GCCGGCACAG chr12:53191072-53191152 53 2.88e-04 TTTGTTCTGT CTGCTGCA CATTGGGCCC chr1:38028751-38028831 51 2.88e-04 GTCTACACAC CAGCAGGA CTGGCCATTT chr15:29149797-29149877 68 3.47e-04 AACAGCGTTG CAGCACCC CTCAG chr6:20069483-20069563 64 3.47e-04 TTAGATAGGG CTGCTGGT CGTACTTCA chr8:101484590-101484670 49 3.47e-04 CCCCATCAGC CTGCTGGC TAGGTGAGAT chr4:96210538-96210618 20 3.47e-04 TTGTTATCTG CTGCTGGC CAGCTTACTC chr1:176849123-176849203 29 3.47e-04 ACTGAACACT CAGCACCC TCAGAGGGTT chr7:110634801-110634881 32 3.47e-04 ACAATCTCTT CAGCACCT CTCTTACTGG chr21:33108159-33108239 2 3.47e-04 G CAGCACCT GTATCTGTTC chr20:42167327-42167407 30 3.47e-04 GACACTGTAA CTGCTGGT AAGCACTCCT chr10:52325133-52325213 60 3.47e-04 AGAAAGTAAG CAGCACCC TTTGGGGTGG chr12:124654236-12465431 36 3.47e-04 AATGGCCGTA CAGCACCC TGCTCCCCAG chr12:32201001-32201081 64 3.47e-04 tacagagaaa ctgctggt tttcaagat chr17:26432740-26432820 64 3.63e-04 TCCATTTCTC CAGCTGGA TCTGGAGTA chr3:39430282-39430362 1 3.91e-04 . CAGCTCCT GGAACTAAGG chr19:50279184-50279264 62 3.91e-04 caaggtaagg cagctccC TGGCCCCGTC chr16:193146-193226 65 4.07e-04 CCACCGCCAT CTGCAGGA GGGCCGGG chr8:48469916-48469996 28 4.35e-04 AGGCCAGTTG CTGCACCT CTGTTCTGAA chr10:126277877-12627795 34 4.65e-04 AAAGCTTCCA CTGCTGGA TGGAGCCCTG chr5:126312701-126312781 67 5.23e-04 CCAACATAAT CAGCACGT ACATGA chr11:16878940-16879020 21 5.23e-04 ACTTTTGTTG CTGCTCCC CACTGGGAGG chr3:10020817-10020897 33 5.23e-04 GTAATACATT CTGCTCCC TGGATGCTAG chr2:88550000-88550080 31 5.82e-04 acatttagtg ctgcacca accctcttgc chr15:48872642-48872722 17 6.41e-04 GTATTATCTT CTGCTCCA AGTGCACTCG chr15:39432299-39432379 4 6.69e-04 GCT CTGCTCGC CCTGCAGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCWGSH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:21272964-21273044 3e-05 4_[+3]_68 chr22:35608126-35608206 3e-05 65_[+3]_7 chr19:907349-907429 3e-05 38_[+3]_34 chr1:11757340-11757420 3e-05 67_[+3]_5 chr20:9129833-9129913 3e-05 37_[+3]_35 chr11:16626428-16626508 3e-05 69_[+3]_3 chr1:117116157-117116237 3e-05 33_[+3]_39 chr5:42873107-42873187 3e-05 36_[+3]_36 chr20:52682384-52682464 3e-05 49_[+3]_23 chr17:4152918-4152998 3e-05 49_[+3]_23 chrX:10838268-10838348 3e-05 55_[+3]_17 chr22:40586633-40586713 3e-05 28_[+3]_44 chr11:69827688-69827768 3e-05 68_[+3]_4 chr16:25228254-25228334 3e-05 68_[+3]_4 chr7:134345398-134345478 6e-05 48_[+3]_24 chr2:28578560-28578640 6e-05 48_[+3]_24 chr15:40719565-40719645 6e-05 29_[+3]_43 chr1:118153902-118153982 6e-05 17_[+3]_55 chr4:81174846-81174926 6e-05 68_[+3]_4 chr11:75301053-75301133 6e-05 36_[+3]_36 chr11:12214818-12214898 6e-05 55_[+3]_17 chr9:132641541-132641621 6e-05 41_[+3]_31 chr16:70729752-70729832 8.9e-05 42_[+3]_30 chr3:138941047-138941127 8.9e-05 39_[+3]_33 chr6:7899993-7900073 8.9e-05 21_[+3]_51 chr6:3651320-3651400 0.0001 1_[+3]_71 chr15:83471411-83471491 0.0001 33_[+3]_39 chr16:50105131-50105211 0.0001 19_[+3]_53 chr8:22758450-22758530 0.0001 36_[+3]_36 chr7:10843484-10843564 0.0001 57_[+3]_15 chr7:7140175-7140255 0.00017 34_[+3]_38 chr20:57596203-57596283 0.00017 22_[+3]_50 chr1:109677210-109677290 0.00017 45_[+3]_27 chr3:133472764-133472844 0.00017 31_[+3]_41 chr3:105333308-105333388 0.00017 49_[+3]_23 chr7:127627079-127627159 0.00017 9_[+3]_63 chr3:129512920-129513000 0.00018 26_[+3]_46 chr1:108622426-108622506 0.00018 41_[+3]_31 chr2:127431771-127431851 0.00018 36_[+3]_36 chr12:21966229-21966309 0.00018 72_[+3] chr10:99996793-99996873 0.00018 44_[+3]_28 chr6:40683645-40683725 0.00021 11_[+3]_61 chr11:8228037-8228117 0.00021 51_[+3]_21 chr11:27223253-27223333 0.00021 59_[+3]_13 chr9:100987565-100987645 0.00026 48_[+3]_24 chr1:221140292-221140372 0.00026 41_[+3]_31 chrX:129728508-129728588 0.00026 50_[+3]_22 chr17:19913638-19913718 0.00026 20_[+3]_52 chr17:76142345-76142425 0.00026 39_[+3]_33 chr5:10708813-10708893 0.00026 35_[+3]_37 chr9:100700563-100700643 0.00026 18_[+3]_54 chr17:31835398-31835478 0.00026 52_[+3]_20 chr5:67724163-67724243 0.00026 31_[+3]_41 chr11:876117-876197 0.00029 19_[+3]_53 chr12:53191072-53191152 0.00029 52_[+3]_20 chr1:38028751-38028831 0.00029 50_[+3]_22 chr15:29149797-29149877 0.00035 67_[+3]_5 chr6:20069483-20069563 0.00035 63_[+3]_9 chr8:101484590-101484670 0.00035 48_[+3]_24 chr4:96210538-96210618 0.00035 19_[+3]_53 chr1:176849123-176849203 0.00035 28_[+3]_44 chr7:110634801-110634881 0.00035 31_[+3]_41 chr21:33108159-33108239 0.00035 1_[+3]_71 chr20:42167327-42167407 0.00035 29_[+3]_43 chr10:52325133-52325213 0.00035 59_[+3]_13 chr12:124654236-12465431 0.00035 35_[+3]_37 chr12:32201001-32201081 0.00035 63_[+3]_9 chr17:26432740-26432820 0.00036 63_[+3]_9 chr3:39430282-39430362 0.00039 [+3]_72 chr19:50279184-50279264 0.00039 61_[+3]_11 chr16:193146-193226 0.00041 64_[+3]_8 chr8:48469916-48469996 0.00044 27_[+3]_45 chr10:126277877-12627795 0.00047 33_[+3]_39 chr5:126312701-126312781 0.00052 66_[+3]_6 chr11:16878940-16879020 0.00052 20_[+3]_52 chr3:10020817-10020897 0.00052 32_[+3]_40 chr2:88550000-88550080 0.00058 30_[+3]_42 chr15:48872642-48872722 0.00064 16_[+3]_56 chr15:39432299-39432379 0.00067 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCWGSH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGCWGSH width=8 seqs=79 chr16:21272964-21273044 ( 5) CAGCAGCT 1 chr22:35608126-35608206 ( 66) CAGCAGCT 1 chr19:907349-907429 ( 39) CAGCAGCT 1 chr1:11757340-11757420 ( 68) CAGCAGCT 1 chr20:9129833-9129913 ( 38) CAGCAGCC 1 chr11:16626428-16626508 ( 70) CAGCAGCC 1 chr1:117116157-117116237 ( 34) CAGCAGCT 1 chr5:42873107-42873187 ( 37) CAGCAGCC 1 chr20:52682384-52682464 ( 50) CAGCAGCT 1 chr17:4152918-4152998 ( 50) CAGCAGCC 1 chrX:10838268-10838348 ( 56) CAGCAGCT 1 chr22:40586633-40586713 ( 29) CAGCAGCT 1 chr11:69827688-69827768 ( 69) CAGCAGCT 1 chr16:25228254-25228334 ( 69) CAGCAGCT 1 chr7:134345398-134345478 ( 49) CAGCTGCT 1 chr2:28578560-28578640 ( 49) CAGCTGCC 1 chr15:40719565-40719645 ( 30) CAGCTGCT 1 chr1:118153902-118153982 ( 18) CAGCTGCT 1 chr4:81174846-81174926 ( 69) CAGCTGCC 1 chr11:75301053-75301133 ( 37) CAGCTGCT 1 chr11:12214818-12214898 ( 56) CAGCTGCT 1 chr9:132641541-132641621 ( 42) CAGCTGCC 1 chr16:70729752-70729832 ( 43) CTGCAGCC 1 chr3:138941047-138941127 ( 40) CTGCAGCC 1 chr6:7899993-7900073 ( 22) CTGCAGCC 1 chr6:3651320-3651400 ( 2) CAGCAGCA 1 chr15:83471411-83471491 ( 34) CAGCAGCA 1 chr16:50105131-50105211 ( 20) CAGCAGCA 1 chr8:22758450-22758530 ( 37) CAGCAGCA 1 chr7:10843484-10843564 ( 58) CAGCAGCA 1 chr7:7140175-7140255 ( 35) CAGCAGGC 1 chr20:57596203-57596283 ( 23) CTGCTGCT 1 chr1:109677210-109677290 ( 46) CTGCTGCT 1 chr3:133472764-133472844 ( 32) CAGCAGGC 1 chr3:105333308-105333388 ( 50) CTGCTGCT 1 chr7:127627079-127627159 ( 10) CAGCAGGC 1 chr3:129512920-129513000 ( 27) CAGCTGCA 1 chr1:108622426-108622506 ( 42) CAGCTGCA 1 chr2:127431771-127431851 ( 37) CAGCTGCA 1 chr12:21966229-21966309 ( 73) CAGCTGCA 1 chr10:99996793-99996873 ( 45) CAGCTGCA 1 chr6:40683645-40683725 ( 12) CAGCTGGT 1 chr11:8228037-8228117 ( 52) CAGCTGGC 1 chr11:27223253-27223333 ( 60) CAGCTGGC 1 chr9:100987565-100987645 ( 49) CTGCAGGT 1 chr1:221140292-221140372 ( 42) CTGCAGGT 1 chrX:129728508-129728588 ( 51) CTGCAGGT 1 chr17:19913638-19913718 ( 21) CTGCAGGC 1 chr17:76142345-76142425 ( 40) CTGCAGGC 1 chr5:10708813-10708893 ( 36) CTGCAGGC 1 chr9:100700563-100700643 ( 19) CTGCAGGC 1 chr17:31835398-31835478 ( 53) CTGCAGGC 1 chr5:67724163-67724243 ( 32) CTGCAGGC 1 chr11:876117-876197 ( 20) CAGCAGGA 1 chr12:53191072-53191152 ( 53) CTGCTGCA 1 chr1:38028751-38028831 ( 51) CAGCAGGA 1 chr15:29149797-29149877 ( 68) CAGCACCC 1 chr6:20069483-20069563 ( 64) CTGCTGGT 1 chr8:101484590-101484670 ( 49) CTGCTGGC 1 chr4:96210538-96210618 ( 20) CTGCTGGC 1 chr1:176849123-176849203 ( 29) CAGCACCC 1 chr7:110634801-110634881 ( 32) CAGCACCT 1 chr21:33108159-33108239 ( 2) CAGCACCT 1 chr20:42167327-42167407 ( 30) CTGCTGGT 1 chr10:52325133-52325213 ( 60) CAGCACCC 1 chr12:124654236-12465431 ( 36) CAGCACCC 1 chr12:32201001-32201081 ( 64) CTGCTGGT 1 chr17:26432740-26432820 ( 64) CAGCTGGA 1 chr3:39430282-39430362 ( 1) CAGCTCCT 1 chr19:50279184-50279264 ( 62) CAGCTCCC 1 chr16:193146-193226 ( 65) CTGCAGGA 1 chr8:48469916-48469996 ( 28) CTGCACCT 1 chr10:126277877-12627795 ( 34) CTGCTGGA 1 chr5:126312701-126312781 ( 67) CAGCACGT 1 chr11:16878940-16879020 ( 21) CTGCTCCC 1 chr3:10020817-10020897 ( 33) CTGCTCCC 1 chr2:88550000-88550080 ( 31) CTGCACCA 1 chr15:48872642-48872722 ( 17) CTGCTCCA 1 chr15:39432299-39432379 ( 4) CTGCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCWGSH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 6.3e-026 -1295 203 -1295 -1295 132 -1295 -1295 58 -1295 -1295 197 -1295 -1295 203 -1295 -1295 120 -1295 -1295 76 -1295 -37 166 -1295 -1295 143 42 -1295 -15 68 -1295 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCWGSH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 6.3e-026 0.000000 1.000000 0.000000 0.000000 0.632911 0.000000 0.000000 0.367089 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.582278 0.000000 0.000000 0.417722 0.000000 0.189873 0.810127 0.000000 0.000000 0.658228 0.341772 0.000000 0.227848 0.392405 0.000000 0.379747 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCWGSH MEME-3 regular expression -------------------------------------------------------------------------------- C[AT]GC[AT]G[CG][CTA] -------------------------------------------------------------------------------- Time 11.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGGSCWG MEME-4 width = 8 sites = 35 llr = 297 E-value = 4.7e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGGSCWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :5::::3: pos.-specific C a:::5a:3 probability G ::aa5::7 matrix T :5::::7: bits 2.0 * ** * 1.8 * ** * 1.6 * ** * 1.4 * ** * Relative 1.2 * ** * * Entropy 1.0 ******** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGGCCTG consensus T G AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGSCWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:27223253-27223333 26 1.54e-05 TCACAGCAAA CAGGCCTG ACCAAGAGCT chr5:131651397-131651477 59 1.54e-05 AGCCTGGGGC CAGGCCTG TTATAGGGTG chr6:119646077-119646157 6 4.63e-05 tgtcc ctggcctg tatacactag chr8:23366392-23366472 19 4.63e-05 ACATGCGGCT CTGGCCTG AGAGCAGATG chr15:40719565-40719645 73 4.63e-05 GGCTGCCTGC CTGGCCTG chr11:8228037-8228117 8 4.63e-05 GAGCGGC CAGGGCTG CTGCCCCAGC chr12:123872859-12387293 43 4.63e-05 tctacctttg cagggctg ctgtgaggtt chr18:55250667-55250747 49 4.63e-05 gctacttctg cagggctg ctgtgaagat chr20:42167327-42167407 46 4.63e-05 GTAAGCACTC CTGGCCTG TGCTCTTCCC chr7:10843484-10843564 69 4.63e-05 AGCAGCACTG CTGGCCTG ATGA chr22:40586633-40586713 39 4.63e-05 CAGCAGCTCT CTGGCCTG CCCTGGTGTG chr9:78974369-78974449 49 6.19e-05 ACCACCTGGG CTGGGCTG CTCAGGACCT chr6:14039428-14039508 40 6.19e-05 ATCTTGCCTC CTGGGCTG CATTGATAAG chr11:12214818-12214898 42 6.19e-05 GGCTCCAGCT CTGGGCTG CAGGAACAGC chr11:69827688-69827768 60 6.19e-05 GCCTCGGAGG CTGGGCTG ACAGCAGCTG chr8:48469916-48469996 17 7.77e-05 GGCGCCTGTC CAGGCCAG TTGCTGCACC chr19:12998425-12998505 64 7.77e-05 GGTGGGGGCC CAGGCCAG CTAGAGCTC chr14:23749580-23749660 11 1.10e-04 CCCCTCCACA CAGGGCAG AAGGTCTCCT chr11:75301053-75301133 2 1.10e-04 C CAGGGCAG CTCTCTGGCT chr6:164767859-164767939 5 1.10e-04 TTAT CTGGCCAG GTGGGGGAGC chr10:52325133-52325213 13 1.10e-04 TAATCTACAT CAGGGCAG TACTGACTTC chr1:45103764-45103844 49 1.10e-04 CCTACCCTCC CTGGCCAG GACTGATAGG chr3:16346294-16346374 37 1.40e-04 TTTGTTGTTG CAGGCCTC CCAGGGACTT chr16:70729752-70729832 64 1.40e-04 TGGGGGAGGG CTGGGCAG GAAGGGTTC chr1:176849123-176849203 58 1.40e-04 GATGGGATTA CTGGGCAG AAGAGATAAG chr11:70588832-70588912 3 1.40e-04 CA CTGGGCAG CGTGGCTGAC chr1:230279440-230279520 3 1.40e-04 TC CAGGCCTC TGTTGCTGCT chr13:44972153-44972233 71 1.40e-04 GCAGATGTCC CAGGCCTC TT chr5:1105718-1105798 33 1.40e-04 CTGCACAGAA CAGGCCTC TGCCCCCAAA chr9:132641541-132641621 11 1.40e-04 aatgagataG CTGGGCAG AGGGGAAGGG chr1:101749217-101749297 54 1.70e-04 CAGTTTCTCC CTGGCCTC TGTTAGCCTC chr11:74919680-74919760 12 1.70e-04 CACTGTCAGC CAGGGCTC AGCCAGCCCA chr10:103335821-10333590 43 1.70e-04 caaaatccaa cagggctc cctgagataa chr16:79434822-79434902 36 1.70e-04 ATAAACACAG CAGGGCTC ACACATACAC chr5:126312701-126312781 3 2.00e-04 AT CAGGCCAC ATTTGGAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGSCWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:27223253-27223333 1.5e-05 25_[+4]_47 chr5:131651397-131651477 1.5e-05 58_[+4]_14 chr6:119646077-119646157 4.6e-05 5_[+4]_67 chr8:23366392-23366472 4.6e-05 18_[+4]_54 chr15:40719565-40719645 4.6e-05 72_[+4] chr11:8228037-8228117 4.6e-05 7_[+4]_65 chr12:123872859-12387293 4.6e-05 42_[+4]_30 chr18:55250667-55250747 4.6e-05 48_[+4]_24 chr20:42167327-42167407 4.6e-05 45_[+4]_27 chr7:10843484-10843564 4.6e-05 68_[+4]_4 chr22:40586633-40586713 4.6e-05 38_[+4]_34 chr9:78974369-78974449 6.2e-05 48_[+4]_24 chr6:14039428-14039508 6.2e-05 39_[+4]_33 chr11:12214818-12214898 6.2e-05 41_[+4]_31 chr11:69827688-69827768 6.2e-05 59_[+4]_13 chr8:48469916-48469996 7.8e-05 16_[+4]_56 chr19:12998425-12998505 7.8e-05 63_[+4]_9 chr14:23749580-23749660 0.00011 10_[+4]_62 chr11:75301053-75301133 0.00011 1_[+4]_71 chr6:164767859-164767939 0.00011 4_[+4]_68 chr10:52325133-52325213 0.00011 12_[+4]_60 chr1:45103764-45103844 0.00011 48_[+4]_24 chr3:16346294-16346374 0.00014 36_[+4]_36 chr16:70729752-70729832 0.00014 63_[+4]_9 chr1:176849123-176849203 0.00014 57_[+4]_15 chr11:70588832-70588912 0.00014 2_[+4]_70 chr1:230279440-230279520 0.00014 2_[+4]_70 chr13:44972153-44972233 0.00014 70_[+4]_2 chr5:1105718-1105798 0.00014 32_[+4]_40 chr9:132641541-132641621 0.00014 10_[+4]_62 chr1:101749217-101749297 0.00017 53_[+4]_19 chr11:74919680-74919760 0.00017 11_[+4]_61 chr10:103335821-10333590 0.00017 42_[+4]_30 chr16:79434822-79434902 0.00017 35_[+4]_37 chr5:126312701-126312781 0.0002 2_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGSCWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGGSCWG width=8 seqs=35 chr11:27223253-27223333 ( 26) CAGGCCTG 1 chr5:131651397-131651477 ( 59) CAGGCCTG 1 chr6:119646077-119646157 ( 6) CTGGCCTG 1 chr8:23366392-23366472 ( 19) CTGGCCTG 1 chr15:40719565-40719645 ( 73) CTGGCCTG 1 chr11:8228037-8228117 ( 8) CAGGGCTG 1 chr12:123872859-12387293 ( 43) CAGGGCTG 1 chr18:55250667-55250747 ( 49) CAGGGCTG 1 chr20:42167327-42167407 ( 46) CTGGCCTG 1 chr7:10843484-10843564 ( 69) CTGGCCTG 1 chr22:40586633-40586713 ( 39) CTGGCCTG 1 chr9:78974369-78974449 ( 49) CTGGGCTG 1 chr6:14039428-14039508 ( 40) CTGGGCTG 1 chr11:12214818-12214898 ( 42) CTGGGCTG 1 chr11:69827688-69827768 ( 60) CTGGGCTG 1 chr8:48469916-48469996 ( 17) CAGGCCAG 1 chr19:12998425-12998505 ( 64) CAGGCCAG 1 chr14:23749580-23749660 ( 11) CAGGGCAG 1 chr11:75301053-75301133 ( 2) CAGGGCAG 1 chr6:164767859-164767939 ( 5) CTGGCCAG 1 chr10:52325133-52325213 ( 13) CAGGGCAG 1 chr1:45103764-45103844 ( 49) CTGGCCAG 1 chr3:16346294-16346374 ( 37) CAGGCCTC 1 chr16:70729752-70729832 ( 64) CTGGGCAG 1 chr1:176849123-176849203 ( 58) CTGGGCAG 1 chr11:70588832-70588912 ( 3) CTGGGCAG 1 chr1:230279440-230279520 ( 3) CAGGCCTC 1 chr13:44972153-44972233 ( 71) CAGGCCTC 1 chr5:1105718-1105798 ( 33) CAGGCCTC 1 chr9:132641541-132641621 ( 11) CTGGGCAG 1 chr1:101749217-101749297 ( 54) CTGGCCTC 1 chr11:74919680-74919760 ( 12) CAGGGCTC 1 chr10:103335821-10333590 ( 43) CAGGGCTC 1 chr16:79434822-79434902 ( 36) CAGGGCTC 1 chr5:126312701-126312781 ( 3) CAGGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGSCWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 4.7e-004 -1177 203 -1177 -1177 102 -1177 -1177 98 -1177 -1177 197 -1177 -1177 -1177 197 -1177 -1177 107 93 -1177 -1177 203 -1177 -1177 44 -1177 -1177 141 -1177 7 154 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGSCWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.7e-004 0.000000 1.000000 0.000000 0.000000 0.514286 0.000000 0.000000 0.485714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.514286 0.485714 0.000000 0.000000 1.000000 0.000000 0.000000 0.342857 0.000000 0.000000 0.657143 0.000000 0.257143 0.742857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGSCWG MEME-4 regular expression -------------------------------------------------------------------------------- C[AT]GG[CG]C[TA][GC] -------------------------------------------------------------------------------- Time 15.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGVTGKG MEME-5 width = 8 sites = 45 llr = 350 E-value = 5.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGVTGKG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:41::: pos.-specific C a:24:::: probability G ::82:a47 matrix T ::::9:63 bits 2.0 ** * 1.8 ** * 1.6 ** * 1.4 ** ** Relative 1.2 *** ** * Entropy 1.0 *** **** (11.2 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGATGTG consensus CC GT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGVTGKG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:121462187-121462267 46 3.13e-05 GCCCACTCAA CAGATGTG AGCAGTTTAG chr15:39432299-39432379 30 3.13e-05 GATAAGAGCA CAGCTGTG GGAAAGCCAG chr6:119646077-119646157 44 3.13e-05 ctcaccccaa cagatgtg acaaccctta chr2:88550000-88550080 13 3.13e-05 tctttaaatg cagctgtg acatttagtg chr4:40313901-40313981 50 3.13e-05 AAGAGGGTAT CAGCTGTG AGCACACTAA chr4:81174846-81174926 24 3.13e-05 CTTCTAGGGT CAGATGTG CTGCTGGAGA chr13:38533645-38533725 17 3.13e-05 tctttatgtg cagctgtg tcttctctgg chr1:40687812-40687892 64 3.13e-05 CAGAGTGACC CAGCTGTG GTCATAGAT chr3:52947083-52947163 61 3.13e-05 GAAAGCCCAG CAGATGTG TAGCTTTATC chr5:32285736-32285816 29 3.13e-05 CCAGAACCCA CAGCTGTG TCTACCCCCA chr22:37948854-37948934 35 6.40e-05 GGACGAAGAG CAGCTGGG TGACACAGAT chr12:106234359-10623443 28 6.40e-05 CTTTGGGCTC CAGCTGGG ACTTTGCAAG chr2:27197328-27197408 45 6.40e-05 GGTGGAGAGG CAGATGGG GCTGAGAGGA chr5:131651397-131651477 15 6.40e-05 GCCTCGCTAT CAGCTGGG ATCCAGGCCT chr8:106744534-106744614 69 8.01e-05 TTTAGAGATG CAGGTGTG ACAT chr9:100700563-100700643 54 8.01e-05 TCACACTGCA CAGGTGTG AGTAGGGGAA chr7:30936867-30936947 20 8.01e-05 CCGTTGGTTC CAGGTGTG GCTTTGAGAT chr21:40357683-40357763 15 1.10e-04 AACAACAGAG CAGATGTT TGCGTGGGAG chr16:50105131-50105211 52 1.10e-04 CCTAAAAGCA CAGATGTT TCTTAGAATA chr5:42873107-42873187 70 1.10e-04 ATGGCTGAGA CAgatgtt ctc chr18:755671-755751 14 1.10e-04 TTGATGCTGG CAGCTGTT TTGCcaagcc chr20:35783236-35783316 5 1.10e-04 gttc cagctgtt gtgttaagca chr3:158461529-158461609 59 1.57e-04 GGCGTTTTCC CACATGTG GCAGCCTAGA chr19:12998425-12998505 52 1.57e-04 AGGCTGCTAT CAGGTGGG GGCCCAGGCC chrX:129728508-129728588 68 1.57e-04 TCACCAGCAC CACATGTG ACCTG chr12:93509074-93509154 51 1.57e-04 TATTGATAAG CACCTGTG GAGACGTGTT chr8:23366392-23366472 31 1.88e-04 GGCCTGAGAG CAGATGGT TTCCGATATA chr4:146200080-146200160 31 1.88e-04 CTCTGCCTCC CAGATGGT CAACTGTGGA chr1:27043841-27043921 51 1.88e-04 tccctgttta cagatggt tctggtgcta chr18:33780465-33780545 4 2.04e-04 ACA CAGGTGTT CAGTGAACTC chr3:152038203-152038283 23 2.35e-04 GTGCAGGCAG CACATGGG GACCTAGTCA chr8:61242959-61243039 46 2.35e-04 catactagtg cacctggg ccctgggtgg chr16:58010471-58010551 28 2.35e-04 TAAGCCTGTG CACCTGGG CCTGGGCCCT chr9:78974369-78974449 41 2.35e-04 CAGAAGAGAC CACCTGGG CTGGGCTGCT chr9:37905371-37905451 26 2.95e-04 TTGTAAGGGT CAGGTGGT GGGGCTGGAT chr3:39430282-39430362 55 2.95e-04 TCCACCCTTC CAGGTGGT GTCTGTAGAT chr15:39809463-39809543 26 2.95e-04 tcacCACCTC CACATGTT GCCATTTTGC chr4:82727824-82727904 18 3.28e-04 ctcctggaaa cagaagtg agacctaatc chr19:907349-907429 62 3.28e-04 GGGCCGATAA CAGAAGTG ACATCCGAGG chr20:5765590-5765670 37 3.28e-04 TCCAGGTGCA CAGCAGTG TGACCTCATG chr1:230279440-230279520 65 3.44e-04 CTGCCACACG CACGTGGG TGACATTG chr16:12887549-12887629 65 3.74e-04 GTTCCCACAG CACATGGT GGGGCTGA chr15:35459065-35459145 26 4.07e-04 CATTCTCAAG CAGCAGGG AAAAGGAGCT chr10:13747879-13747959 10 4.54e-04 TGCCCTACA CAGGAGTG GCTGTTTCAG chr6:69363224-69363304 37 4.54e-04 GATTGGGGAA CAGTTGTG GTGTGCTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGVTGKG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:121462187-121462267 3.1e-05 45_[+5]_27 chr15:39432299-39432379 3.1e-05 29_[+5]_43 chr6:119646077-119646157 3.1e-05 43_[+5]_29 chr2:88550000-88550080 3.1e-05 12_[+5]_60 chr4:40313901-40313981 3.1e-05 49_[+5]_23 chr4:81174846-81174926 3.1e-05 23_[+5]_49 chr13:38533645-38533725 3.1e-05 16_[+5]_56 chr1:40687812-40687892 3.1e-05 63_[+5]_9 chr3:52947083-52947163 3.1e-05 60_[+5]_12 chr5:32285736-32285816 3.1e-05 28_[+5]_44 chr22:37948854-37948934 6.4e-05 34_[+5]_38 chr12:106234359-10623443 6.4e-05 27_[+5]_45 chr2:27197328-27197408 6.4e-05 44_[+5]_28 chr5:131651397-131651477 6.4e-05 14_[+5]_58 chr8:106744534-106744614 8e-05 68_[+5]_4 chr9:100700563-100700643 8e-05 53_[+5]_19 chr7:30936867-30936947 8e-05 19_[+5]_53 chr21:40357683-40357763 0.00011 14_[+5]_58 chr16:50105131-50105211 0.00011 51_[+5]_21 chr5:42873107-42873187 0.00011 69_[+5]_3 chr18:755671-755751 0.00011 13_[+5]_59 chr20:35783236-35783316 0.00011 4_[+5]_68 chr3:158461529-158461609 0.00016 58_[+5]_14 chr19:12998425-12998505 0.00016 51_[+5]_21 chrX:129728508-129728588 0.00016 67_[+5]_5 chr12:93509074-93509154 0.00016 50_[+5]_22 chr8:23366392-23366472 0.00019 30_[+5]_42 chr4:146200080-146200160 0.00019 30_[+5]_42 chr1:27043841-27043921 0.00019 50_[+5]_22 chr18:33780465-33780545 0.0002 3_[+5]_69 chr3:152038203-152038283 0.00023 22_[+5]_50 chr8:61242959-61243039 0.00023 45_[+5]_27 chr16:58010471-58010551 0.00023 27_[+5]_45 chr9:78974369-78974449 0.00023 40_[+5]_32 chr9:37905371-37905451 0.0003 25_[+5]_47 chr3:39430282-39430362 0.0003 54_[+5]_18 chr15:39809463-39809543 0.0003 25_[+5]_47 chr4:82727824-82727904 0.00033 17_[+5]_55 chr19:907349-907429 0.00033 61_[+5]_11 chr20:5765590-5765670 0.00033 36_[+5]_36 chr1:230279440-230279520 0.00034 64_[+5]_8 chr16:12887549-12887629 0.00037 64_[+5]_8 chr15:35459065-35459145 0.00041 25_[+5]_47 chr10:13747879-13747959 0.00045 9_[+5]_63 chr6:69363224-69363304 0.00045 36_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGVTGKG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGVTGKG width=8 seqs=45 chr5:121462187-121462267 ( 46) CAGATGTG 1 chr15:39432299-39432379 ( 30) CAGCTGTG 1 chr6:119646077-119646157 ( 44) CAGATGTG 1 chr2:88550000-88550080 ( 13) CAGCTGTG 1 chr4:40313901-40313981 ( 50) CAGCTGTG 1 chr4:81174846-81174926 ( 24) CAGATGTG 1 chr13:38533645-38533725 ( 17) CAGCTGTG 1 chr1:40687812-40687892 ( 64) CAGCTGTG 1 chr3:52947083-52947163 ( 61) CAGATGTG 1 chr5:32285736-32285816 ( 29) CAGCTGTG 1 chr22:37948854-37948934 ( 35) CAGCTGGG 1 chr12:106234359-10623443 ( 28) CAGCTGGG 1 chr2:27197328-27197408 ( 45) CAGATGGG 1 chr5:131651397-131651477 ( 15) CAGCTGGG 1 chr8:106744534-106744614 ( 69) CAGGTGTG 1 chr9:100700563-100700643 ( 54) CAGGTGTG 1 chr7:30936867-30936947 ( 20) CAGGTGTG 1 chr21:40357683-40357763 ( 15) CAGATGTT 1 chr16:50105131-50105211 ( 52) CAGATGTT 1 chr5:42873107-42873187 ( 70) CAGATGTT 1 chr18:755671-755751 ( 14) CAGCTGTT 1 chr20:35783236-35783316 ( 5) CAGCTGTT 1 chr3:158461529-158461609 ( 59) CACATGTG 1 chr19:12998425-12998505 ( 52) CAGGTGGG 1 chrX:129728508-129728588 ( 68) CACATGTG 1 chr12:93509074-93509154 ( 51) CACCTGTG 1 chr8:23366392-23366472 ( 31) CAGATGGT 1 chr4:146200080-146200160 ( 31) CAGATGGT 1 chr1:27043841-27043921 ( 51) CAGATGGT 1 chr18:33780465-33780545 ( 4) CAGGTGTT 1 chr3:152038203-152038283 ( 23) CACATGGG 1 chr8:61242959-61243039 ( 46) CACCTGGG 1 chr16:58010471-58010551 ( 28) CACCTGGG 1 chr9:78974369-78974449 ( 41) CACCTGGG 1 chr9:37905371-37905451 ( 26) CAGGTGGT 1 chr3:39430282-39430362 ( 55) CAGGTGGT 1 chr15:39809463-39809543 ( 26) CACATGTT 1 chr4:82727824-82727904 ( 18) CAGAAGTG 1 chr19:907349-907429 ( 62) CAGAAGTG 1 chr20:5765590-5765670 ( 37) CAGCAGTG 1 chr1:230279440-230279520 ( 65) CACGTGGG 1 chr16:12887549-12887629 ( 65) CACATGGT 1 chr15:35459065-35459145 ( 26) CAGCAGGG 1 chr10:13747879-13747959 ( 10) CAGGAGTG 1 chr6:69363224-69363304 ( 37) CAGTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGVTGKG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.04017 E= 5.3e-001 -1214 203 -1214 -1214 198 -1214 -1214 -1214 -1214 -14 161 -1214 66 62 -35 -347 -119 -1214 -1214 185 -1214 -1214 197 -1214 -1214 -1214 56 134 -1214 -1214 148 23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGVTGKG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 5.3e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.400000 0.377778 0.200000 0.022222 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.377778 0.622222 0.000000 0.000000 0.711111 0.288889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGVTGKG MEME-5 regular expression -------------------------------------------------------------------------------- CA[GC][ACG]TG[TG][GT] -------------------------------------------------------------------------------- Time 18.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:132641541-132641621 6.16e-05 41_[+3(5.97e-05)]_4_[+1(3.31e-05)]_\ 19 chr1:38028751-38028831 1.43e-02 80 chr5:134528297-134528377 5.00e-02 71_[+2(1.42e-05)]_1 chr5:176075737-176075817 2.39e-01 80 chr16:25228254-25228334 1.58e-04 31_[+1(3.31e-05)]_29_[+3(3.03e-05)]_\ 4 chr2:46486513-46486593 3.98e-02 80 chr11:69827688-69827768 5.62e-04 44_[+3(5.97e-05)]_7_[+4(6.19e-05)]_\ 1_[+3(3.03e-05)]_4 chr7:24903983-24904063 2.06e-02 54_[+1(4.88e-05)]_18 chr5:32285736-32285816 1.46e-02 28_[+5(3.13e-05)]_44 chr1:45103764-45103844 9.62e-03 80 chr3:143734121-143734201 5.20e-01 80 chr3:10020817-10020897 3.03e-02 80 chr6:37079931-37080011 1.21e-01 80 chr5:67724163-67724243 2.65e-02 80 chr8:101776294-101776374 4.79e-02 14_[+1(3.31e-05)]_58 chr1:14135273-14135353 5.87e-02 80 chr17:62291636-62291716 1.40e-01 80 chr16:87755385-87755465 4.28e-02 18_[+2(7.07e-05)]_54 chrX:107801628-107801708 6.33e-02 23_[+1(4.88e-05)]_49 chr6:74238821-74238901 8.43e-02 80 chr1:93912675-93912755 2.46e-02 80 chr5:131649951-131650031 4.41e-02 80 chr20:35783236-35783316 7.65e-03 80 chr6:69363224-69363304 1.68e-01 80 chr1:27043841-27043921 1.16e-02 80 chr22:40586633-40586713 2.45e-06 28_[+3(3.03e-05)]_2_[+4(4.63e-05)]_\ 34 chr8:125503817-125503897 1.59e-02 80 chr8:21818128-21818208 1.42e-02 5_[+2(2.79e-05)]_67 chr5:1105718-1105798 2.44e-03 17_[+2(9.96e-05)]_55 chr15:61913540-61913620 3.08e-02 41_[+2(7.07e-05)]_31 chr8:123840539-123840619 4.34e-01 80 chr16:79434822-79434902 1.47e-03 80 chr1:75938226-75938306 1.62e-02 80 chr1:95581296-95581376 4.94e-02 80 chr1:95100699-95100779 1.16e-03 80 chr12:53191072-53191152 6.80e-04 18_[+2(2.79e-05)]_54 chr7:10843484-10843564 1.31e-04 38_[+1(4.88e-05)]_22_[+4(4.63e-05)]_\ 4 chr3:154897474-154897554 4.72e-02 66_[+1(3.31e-05)]_6 chr19:50279184-50279264 2.30e-03 27_[+2(7.07e-05)]_45 chr12:32201001-32201081 7.27e-04 28_[+1(1.62e-05)]_44 chr7:30936867-30936947 1.56e-02 19_[+5(8.01e-05)]_53 chrX:10838268-10838348 1.08e-05 7_[+2(1.42e-05)]_40_[+3(3.03e-05)]_\ 17 chr10:99996793-99996873 5.01e-04 80 chr14:76006324-76006404 7.99e-01 80 chr17:58439427-58439507 7.68e-01 80 chr22:24487878-24487958 2.91e-02 31_[+2(1.42e-05)]_41 chr15:50886660-50886740 8.41e-02 80 chr18:755671-755751 1.62e-03 80 chr11:111781881-11178196 4.75e-02 43_[+1(3.31e-05)]_29 chr20:3911603-3911683 1.54e-04 8_[+2(1.42e-05)]_64 chr3:129180861-129180941 1.17e-01 80 chr3:23850153-23850233 8.28e-02 80 chr7:127627079-127627159 1.92e-03 80 chr19:18110561-18110641 1.15e-01 37_[+1(4.88e-05)]_35 chr17:31835398-31835478 5.17e-03 34_[+2(7.07e-05)]_38 chr4:103277026-103277106 6.46e-01 80 chr10:103335821-10333590 9.81e-05 53_[+1(3.31e-05)]_19 chr11:12214818-12214898 1.53e-05 41_[+4(6.19e-05)]_6_[+3(5.97e-05)]_\ 5_[+1(1.62e-05)]_4 chr2:84285178-84285258 9.24e-03 66_[+1(1.62e-05)]_6 chr13:51187586-51187666 5.15e-03 16_[+2(7.07e-05)]_56 chr9:100705725-100705805 7.33e-02 80 chr17:4152918-4152998 2.53e-02 49_[+3(3.03e-05)]_23 chr13:44972153-44972233 8.35e-03 80 chr12:124654236-12465431 2.30e-02 80 chr14:55850708-55850788 2.65e-03 55_[+1(1.62e-05)]_17 chr20:52682384-52682464 5.53e-04 49_[+3(3.03e-05)]_8_[+1(3.31e-05)]_\ 7 chr18:43303053-43303133 1.22e-02 44_[+1(4.88e-05)]_28 chr10:52325133-52325213 8.15e-03 80 chr6:14039428-14039508 4.03e-03 39_[+4(6.19e-05)]_33 chr20:3890829-3890909 1.95e-02 80 chr5:131651397-131651477 6.28e-05 14_[+5(6.40e-05)]_36_[+4(1.54e-05)]_\ 14 chr5:42873107-42873187 7.44e-06 21_[+2(2.79e-05)]_7_[+3(3.03e-05)]_\ 36 chr8:1708392-1708472 3.88e-02 80 chr1:229889645-229889725 3.82e-02 80 chr8:99318580-99318660 5.63e-03 8_[+2(4.27e-05)]_64 chr19:40512273-40512353 2.43e-02 3_[+2(1.42e-05)]_69 chr10:13747879-13747959 2.55e-02 80 chr22:32022700-32022780 6.32e-02 80 chr10:126277877-12627795 2.22e-03 4_[+2(1.42e-05)]_68 chr1:117116157-117116237 1.80e-03 33_[+3(3.03e-05)]_39 chr9:100700563-100700643 1.55e-03 53_[+5(8.01e-05)]_19 chr3:105333308-105333388 1.80e-03 80 chr7:136174723-136174803 9.46e-02 54_[+1(3.31e-05)]_18 chr5:111885592-111885672 2.80e-01 80 chr9:78974369-78974449 2.13e-04 43_[+4(6.19e-05)]_19_[+1(3.31e-05)]_\ 2 chr11:63284804-63284884 5.89e-02 80 chr15:91084196-91084276 5.59e-03 41_[+1(1.62e-05)]_31 chr17:26432740-26432820 8.36e-03 21_[+2(7.07e-05)]_51 chr1:230279440-230279520 4.91e-05 49_[+2(9.96e-05)]_23 chr5:10708813-10708893 2.12e-03 69_[+1(1.62e-05)]_3 chr10:28783479-28783559 5.07e-03 80 chr6:133120338-133120418 3.59e-02 80 chr3:133472764-133472844 5.02e-03 16_[+2(8.53e-05)]_56 chr11:27223253-27223333 1.45e-04 25_[+4(1.54e-05)]_47 chr8:86290459-86290539 7.15e-02 65_[+1(4.88e-05)]_7 chr11:16878940-16879020 3.30e-01 80 chr16:58010471-58010551 2.60e-04 46_[+1(1.62e-05)]_26 chr16:58894020-58894100 1.66e-02 5_[+2(8.53e-05)]_67 chr3:52947083-52947163 7.39e-05 7_[+2(1.42e-05)]_45_[+5(3.13e-05)]_\ 12 chr8:106744534-106744614 2.38e-02 68_[+5(8.01e-05)]_4 chr17:76142345-76142425 7.09e-03 27_[+2(7.07e-05)]_45 chr5:126312701-126312781 2.50e-03 80 chr15:39809463-39809543 1.87e-03 42_[+2(8.53e-05)]_30 chr18:33780465-33780545 4.93e-04 70_[+1(1.62e-05)]_2 chr17:19913638-19913718 1.29e-02 80 chr20:42167327-42167407 4.31e-04 45_[+4(4.63e-05)]_27 chr1:70005907-70005987 7.15e-03 80 chr6:164767859-164767939 2.90e-03 80 chr7:134519776-134519856 1.13e-01 80 chr20:5765590-5765670 9.62e-06 13_[+2(1.42e-05)]_35_[+4(4.63e-05)]_\ 16 chr12:21966229-21966309 8.80e-04 46_[+1(3.31e-05)]_26 chr15:48872642-48872722 8.12e-03 80 chr1:40687812-40687892 7.41e-03 63_[+5(3.13e-05)]_9 chr13:38533645-38533725 1.15e-03 16_[+5(3.13e-05)]_56 chr8:61242959-61243039 9.52e-03 80 chr1:109677210-109677290 4.66e-03 7_[+1(4.88e-05)]_65 chr12:93509074-93509154 5.67e-03 80 chr21:33108159-33108239 1.24e-02 80 chr8:145538800-145538880 2.68e-03 16_[+2(9.96e-05)]_56 chr4:154449954-154450034 9.71e-04 67_[+2(1.42e-05)]_5 chr15:92021975-92022055 1.78e-01 80 chr2:9814124-9814204 5.88e-02 80 chr19:19171110-19171190 2.03e-02 20_[+2(1.42e-05)]_52 chr7:110634801-110634881 9.66e-03 55_[+1(6.53e-05)]_17 chr12:127354323-12735440 4.95e-01 80 chr1:207823476-207823556 2.19e-04 80 chr3:176379483-176379563 9.11e-02 80 chr9:116131408-116131488 7.87e-02 80 chr4:122715793-122715873 5.90e-02 80 chr11:75301053-75301133 4.43e-05 36_[+3(5.97e-05)]_36 chr3:150456332-150456412 1.27e-01 80 chr16:193146-193226 1.01e-02 80 chr4:146200080-146200160 1.40e-02 80 chr18:43640367-43640447 4.36e-02 80 chr6:7899993-7900073 1.70e-03 21_[+3(8.92e-05)]_51 chrX:129728508-129728588 8.04e-04 80 chr1:158661853-158661933 3.43e-01 80 chr11:70588832-70588912 7.66e-03 29_[+1(3.31e-05)]_43 chr4:81174846-81174926 1.55e-04 23_[+5(3.13e-05)]_37_[+3(5.97e-05)]_\ 4 chr14:23749580-23749660 1.11e-02 80 chr7:100108539-100108619 1.40e-01 80 chr11:16626428-16626508 3.78e-03 69_[+3(3.03e-05)]_3 chr22:32333506-32333586 6.92e-02 80 chr3:39430282-39430362 3.85e-02 80 chr8:22758450-22758530 1.08e-02 80 chr11:129947712-12994779 1.06e-02 46_[+2(8.53e-05)]_26 chr6:32256378-32256458 2.50e-01 80 chr1:57684553-57684633 2.71e-03 80 chr11:85862550-85862630 9.10e-02 80 chr18:46599118-46599198 1.63e-01 80 chr10:51577172-51577252 1.38e-01 80 chr18:55250667-55250747 1.12e-04 30_[+1(6.53e-05)]_10_[+4(4.63e-05)]_\ 24 chr22:23449268-23449348 3.54e-02 80 chr5:76145895-76145975 1.31e-02 53_[+2(2.79e-05)]_19 chr11:876117-876197 1.71e-03 46_[+1(1.62e-05)]_26 chr15:73797384-73797464 4.96e-02 6_[+2(1.42e-05)]_66 chr6:150592742-150592822 1.17e-02 80 chr2:202305040-202305120 2.18e-03 25_[+1(1.62e-05)]_47 chrX:109202813-109202893 1.30e-01 80 chr2:10533330-10533410 9.63e-02 80 chr3:138941047-138941127 7.47e-03 39_[+3(8.92e-05)]_33 chr19:12998425-12998505 7.92e-04 63_[+4(7.77e-05)]_9 chr2:27197328-27197408 3.17e-04 [+2(1.42e-05)]_36_[+5(6.40e-05)]_28 chr3:158461529-158461609 5.79e-03 80 chr16:12887549-12887629 5.56e-03 8_[+2(7.07e-05)]_64 chr12:57432990-57433070 1.55e-01 80 chr1:205225187-205225267 3.05e-03 46_[+2(2.79e-05)]_26 chr20:9129833-9129913 5.03e-03 37_[+3(3.03e-05)]_35 chr16:50105131-50105211 2.52e-04 7_[+2(7.07e-05)]_65 chr1:16380752-16380832 1.28e-02 80 chr21:40357683-40357763 6.60e-02 80 chr1:175703075-175703155 1.02e-02 26_[+1(3.31e-05)]_46 chr1:118153902-118153982 4.99e-03 17_[+3(5.97e-05)]_55 chr4:10327863-10327943 1.24e-01 80 chr4:40313901-40313981 6.48e-03 49_[+5(3.13e-05)]_23 chr1:11757340-11757420 3.10e-04 17_[+2(8.53e-05)]_42_[+3(3.03e-05)]_\ 5 chr3:152038203-152038283 1.40e-03 80 chr11:71706836-71706916 5.47e-02 80 chr12:123872859-12387293 2.23e-03 42_[+4(4.63e-05)]_30 chr2:127431771-127431851 2.24e-03 27_[+2(8.53e-05)]_45 chr2:15696591-15696671 9.44e-03 80 chr8:48469916-48469996 1.23e-03 16_[+4(7.77e-05)]_56 chr19:907349-907429 6.22e-04 38_[+3(3.03e-05)]_34 chr16:89785577-89785657 5.72e-03 38_[+2(2.79e-05)]_34 chr11:82503029-82503109 1.58e-01 80 chr6:123033615-123033695 4.62e-03 80 chr22:43579669-43579749 1.74e-02 42_[+1(3.31e-05)]_30 chr9:37905371-37905451 7.29e-04 6_[+1(3.31e-05)]_66 chr11:8228037-8228117 7.56e-05 7_[+4(4.63e-05)]_9_[+1(4.88e-05)]_\ 48 chr4:25052509-25052589 4.36e-02 30_[+1(1.62e-05)]_42 chr15:40719565-40719645 3.04e-05 29_[+3(5.97e-05)]_5_[+1(3.31e-05)]_\ 22_[+4(4.63e-05)] chr1:221140292-221140372 3.90e-03 5_[+2(2.79e-05)]_67 chr15:83471411-83471491 5.17e-04 15_[+2(8.53e-05)]_57 chr21:46780264-46780344 1.25e-03 16_[+2(4.27e-05)]_56 chr7:100239171-100239251 1.13e-02 42_[+2(8.53e-05)]_30 chr9:130877981-130878061 6.49e-03 42_[+2(7.07e-05)]_30 chr9:100987565-100987645 6.06e-04 80 chr22:35608126-35608206 1.83e-04 65_[+3(3.03e-05)]_7 chr11:69720481-69720561 2.62e-03 15_[+2(1.42e-05)]_15_[+2(2.79e-05)]_\ 34 chr12:106234359-10623443 2.25e-04 27_[+5(6.40e-05)]_45 chr16:21272964-21273044 3.55e-04 4_[+3(3.03e-05)]_68 chr7:2775048-2775128 1.29e-02 80 chr2:28578560-28578640 5.19e-03 48_[+3(5.97e-05)]_24 chr1:95551154-95551234 4.81e-02 80 chr2:88550000-88550080 1.05e-02 12_[+5(3.13e-05)]_60 chr8:23366392-23366472 2.38e-03 18_[+4(4.63e-05)]_54 chr1:108622426-108622506 1.66e-02 80 chr6:119646077-119646157 2.61e-05 5_[+4(4.63e-05)]_30_[+5(3.13e-05)]_\ 6_[+2(2.79e-05)]_15 chr4:82727824-82727904 5.34e-03 80 chr1:176849123-176849203 7.57e-05 67_[+1(3.31e-05)]_5 chr6:40683645-40683725 8.56e-04 64_[+1(3.31e-05)]_8 chr1:156430433-156430513 9.98e-02 80 chr10:50394817-50394897 4.70e-02 80 chr8:103405041-103405121 3.61e-01 80 chr4:1884778-1884858 2.09e-01 80 chr4:96210538-96210618 5.99e-04 11_[+2(4.27e-05)]_61 chr17:57762498-57762578 1.65e-02 18_[+2(2.79e-05)]_54 chr21:35483106-35483186 7.67e-02 80 chr15:35459065-35459145 6.74e-04 48_[+1(3.31e-05)]_24 chr7:134345398-134345478 2.76e-03 48_[+3(5.97e-05)]_24 chr21:31014399-31014479 4.11e-01 80 chr11:73727502-73727582 1.75e-02 39_[+2(1.42e-05)]_33 chr1:151948669-151948749 1.81e-02 80 chr11:74919680-74919760 3.53e-03 31_[+2(2.79e-05)]_41 chr1:20525603-20525683 9.29e-02 80 chr6:80314359-80314439 2.10e-02 80 chr6:139766796-139766876 9.29e-01 80 chr8:101484590-101484670 1.06e-02 80 chr20:57596203-57596283 3.13e-02 80 chr15:39432299-39432379 8.34e-04 17_[+1(6.53e-05)]_4_[+5(3.13e-05)]_\ 43 chr6:20069483-20069563 1.58e-02 80 chr15:60907542-60907622 1.61e-01 80 chr16:70729752-70729832 7.03e-04 42_[+3(8.92e-05)]_30 chr1:101749217-101749297 6.10e-03 70_[+1(4.88e-05)]_2 chr6:14477230-14477310 2.50e-02 80 chr22:37948854-37948934 3.76e-03 4_[+5(6.40e-05)]_22_[+5(6.40e-05)]_\ 38 chr3:129512920-129513000 4.86e-02 80 chr4:139592801-139592881 1.29e-01 80 chr3:42878220-42878300 7.42e-02 38_[+1(1.62e-05)]_34 chr13:103259120-10325920 2.84e-02 80 chr9:100702717-100702797 2.27e-01 80 chr3:16346294-16346374 4.71e-04 20_[+2(7.07e-05)]_52 chr6:131967569-131967649 1.40e-01 80 chr7:7140175-7140255 6.18e-04 80 chr15:29149797-29149877 1.71e-02 22_[+2(4.27e-05)]_50 chr6:3651320-3651400 1.03e-04 65_[+1(6.53e-05)]_7 chrX:55054610-55054690 2.03e-02 80 chr5:121462187-121462267 6.54e-03 45_[+5(3.13e-05)]_27 chr1:46886044-46886124 2.26e-02 80 chr5:77883633-77883713 1.68e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************