******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF9B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:37731355-37731435 1.0000 80 chr4:82646360-82646440 1.0000 80 chr5:68596535-68596615 1.0000 80 chr10:105127689-10512776 1.0000 80 chr15:82439435-82439515 1.0000 80 chr10:97277416-97277496 1.0000 80 chr2:54308933-54309013 1.0000 80 chr7:66691402-66691482 1.0000 80 chr13:111607679-11160775 1.0000 80 chr17:1620859-1620939 1.0000 80 chr3:194296057-194296137 1.0000 80 chr19:11494936-11495016 1.0000 80 chr7:25894898-25894978 1.0000 80 chr15:89631208-89631288 1.0000 80 chr10:134956862-13495694 1.0000 80 chr17:71225014-71225094 1.0000 80 chr2:178618697-178618777 1.0000 80 chr8:131515546-131515626 1.0000 80 chr14:62161948-62162028 1.0000 80 chr21:30672632-30672712 1.0000 80 chr2:10638120-10638200 1.0000 80 chr2:156087830-156087910 1.0000 80 chr3:196170977-196171057 1.0000 80 chr6:161695234-161695314 1.0000 80 chr12:125120969-12512104 1.0000 80 chr11:62341196-62341276 1.0000 80 chr10:104421146-10442122 1.0000 80 chr19:5978019-5978099 1.0000 80 chr1:39864510-39864590 1.0000 80 chr18:55487401-55487481 1.0000 80 chr1:2121162-2121242 1.0000 80 chr14:61201467-61201547 1.0000 80 chr16:4322990-4323070 1.0000 80 chr19:46272699-46272779 1.0000 80 chr9:98196599-98196679 1.0000 80 chr11:118661981-11866206 1.0000 80 chr11:6589846-6589926 1.0000 80 chr14:58637939-58638019 1.0000 80 chr8:131342295-131342375 1.0000 80 chr1:16490865-16490945 1.0000 80 chr3:128523163-128523243 1.0000 80 chr4:2010608-2010688 1.0000 80 chr12:116561462-11656154 1.0000 80 chr6:7166770-7166850 1.0000 80 chr1:161129293-161129373 1.0000 80 chr1:10460633-10460713 1.0000 80 chr15:79471529-79471609 1.0000 80 chr19:34850474-34850554 1.0000 80 chr16:29302348-29302428 1.0000 80 chr1:154404194-154404274 1.0000 80 chrX:106985104-106985184 1.0000 80 chr5:112420603-112420683 1.0000 80 chr7:7139376-7139456 1.0000 80 chr2:234335409-234335489 1.0000 80 chr19:47289559-47289639 1.0000 80 chr2:15870731-15870811 1.0000 80 chr3:45709658-45709738 1.0000 80 chr3:81792675-81792755 1.0000 80 chr16:27558554-27558634 1.0000 80 chr15:72529820-72529900 1.0000 80 chr16:11350263-11350343 1.0000 80 chrX:102470039-102470119 1.0000 80 chr20:30287121-30287201 1.0000 80 chr7:134832716-134832796 1.0000 80 chr10:82500180-82500260 1.0000 80 chrX:48858554-48858634 1.0000 80 chr9:32552333-32552413 1.0000 80 chr1:31944533-31944613 1.0000 80 chrX:71496980-71497060 1.0000 80 chr9:124044293-124044373 1.0000 80 chr5:170921691-170921771 1.0000 80 chr5:170814446-170814526 1.0000 80 chr19:49379674-49379754 1.0000 80 chr6:52382486-52382566 1.0000 80 chr5:60704538-60704618 1.0000 80 chr21:47744279-47744359 1.0000 80 chr2:220143977-220144057 1.0000 80 chr12:31886829-31886909 1.0000 80 chr20:30195247-30195327 1.0000 80 chr2:27851885-27851965 1.0000 80 chr11:71640089-71640169 1.0000 80 chr3:72319293-72319373 1.0000 80 chr7:44645986-44646066 1.0000 80 chr10:74451826-74451906 1.0000 80 chr13:99133411-99133491 1.0000 80 chr8:74205759-74205839 1.0000 80 chr16:15982353-15982433 1.0000 80 chr2:217363566-217363646 1.0000 80 chr2:70121042-70121122 1.0000 80 chr18:832331-832411 1.0000 80 chr12:124555122-12455520 1.0000 80 chr10:32428402-32428482 1.0000 80 chr2:88899790-88899870 1.0000 80 chr19:47818671-47818751 1.0000 80 chr1:1690380-1690460 1.0000 80 chr22:33277120-33277200 1.0000 80 chr7:53879505-53879585 1.0000 80 chr1:247634595-247634675 1.0000 80 chr14:91976586-91976666 1.0000 80 chr15:63402227-63402307 1.0000 80 chrX:2595912-2595992 1.0000 80 chr2:232571965-232572045 1.0000 80 chr1:203275508-203275588 1.0000 80 chr22:35768039-35768119 1.0000 80 chr15:101708542-10170862 1.0000 80 chr20:2295861-2295941 1.0000 80 chrX:48432615-48432695 1.0000 80 chr3:197518184-197518264 1.0000 80 chr6:29935453-29935533 1.0000 80 chr3:45587162-45587242 1.0000 80 chr11:129939734-12993981 1.0000 80 chr1:33190890-33190970 1.0000 80 chr12:53689348-53689428 1.0000 80 chr13:111616766-11161684 1.0000 80 chr16:11227353-11227433 1.0000 80 chr7:99797957-99798037 1.0000 80 chr15:45020965-45021045 1.0000 80 chr10:103578076-10357815 1.0000 80 chr2:67624466-67624546 1.0000 80 chr6:34393741-34393821 1.0000 80 chr1:224618390-224618470 1.0000 80 chr22:38576164-38576244 1.0000 80 chr3:180630486-180630566 1.0000 80 chr6:42185545-42185625 1.0000 80 chr19:909359-909439 1.0000 80 chr2:238632457-238632537 1.0000 80 chr13:99852799-99852879 1.0000 80 chr5:39399768-39399848 1.0000 80 chr6:30923410-30923490 1.0000 80 chr17:75230077-75230157 1.0000 80 chr7:77325768-77325848 1.0000 80 chr20:44563346-44563426 1.0000 80 chr7:86633914-86633994 1.0000 80 chr17:43109149-43109229 1.0000 80 chr1:182764869-182764949 1.0000 80 chr1:100715304-100715384 1.0000 80 chr20:3058619-3058699 1.0000 80 chr12:4262882-4262962 1.0000 80 chr5:122847946-122848026 1.0000 80 chr16:12131026-12131106 1.0000 80 chr10:11936665-11936745 1.0000 80 chr12:108954863-10895494 1.0000 80 chr14:23398457-23398537 1.0000 80 chr1:84569182-84569262 1.0000 80 chr17:37607363-37607443 1.0000 80 chr17:74102267-74102347 1.0000 80 chr16:70557714-70557794 1.0000 80 chr1:247634794-247634874 1.0000 80 chr15:69745122-69745202 1.0000 80 chr12:51415576-51415656 1.0000 80 chr19:38865416-38865496 1.0000 80 chr22:50557238-50557318 1.0000 80 chr17:73257923-73258003 1.0000 80 chr22:35773040-35773120 1.0000 80 chr1:150336191-150336271 1.0000 80 chr5:40798132-40798212 1.0000 80 chr1:160232162-160232242 1.0000 80 chr1:46268472-46268552 1.0000 80 chr7:99716931-99717011 1.0000 80 chr22:47330933-47331013 1.0000 80 chr14:23564169-23564249 1.0000 80 chr11:77531722-77531802 1.0000 80 chr16:53133775-53133855 1.0000 80 chr20:49574998-49575078 1.0000 80 chr5:180670794-180670874 1.0000 80 chr16:126857-126937 1.0000 80 chr8:93620178-93620258 1.0000 80 chr7:22862390-22862470 1.0000 80 chr2:208890224-208890304 1.0000 80 chr22:37638729-37638809 1.0000 80 chr6:42713728-42713808 1.0000 80 chr11:31531342-31531422 1.0000 80 chr17:28804442-28804522 1.0000 80 chr6:88433102-88433182 1.0000 80 chr18:57721096-57721176 1.0000 80 chr16:2827509-2827589 1.0000 80 chr11:64622563-64622643 1.0000 80 chr17:28443850-28443930 1.0000 80 chr17:7487239-7487319 1.0000 80 chr11:10512288-10512368 1.0000 80 chr11:69064970-69065050 1.0000 80 chr12:54069656-54069736 1.0000 80 chr12:52299594-52299674 1.0000 80 chr2:71357265-71357345 1.0000 80 chr22:30217471-30217551 1.0000 80 chr1:59165625-59165705 1.0000 80 chr16:4475908-4475988 1.0000 80 chr6:18585431-18585511 1.0000 80 chr2:114647323-114647403 1.0000 80 chr12:56754182-56754262 1.0000 80 chr16:89043487-89043567 1.0000 80 chr5:52856493-52856573 1.0000 80 chr11:82868217-82868297 1.0000 80 chr12:95397396-95397476 1.0000 80 chr6:4942123-4942203 1.0000 80 chr17:1225482-1225562 1.0000 80 chr6:31588656-31588736 1.0000 80 chr6:43445323-43445403 1.0000 80 chr7:12727214-12727294 1.0000 80 chrX:53254414-53254494 1.0000 80 chr14:92588296-92588376 1.0000 80 chr22:41347422-41347502 1.0000 80 chrX:24073025-24073105 1.0000 80 chr16:11945289-11945369 1.0000 80 chr1:110882095-110882175 1.0000 80 chr5:158729378-158729458 1.0000 80 chr21:38827819-38827899 1.0000 80 chr1:226496746-226496826 1.0000 80 chr1:87379725-87379805 1.0000 80 chr11:107328461-10732854 1.0000 80 chr18:21002866-21002946 1.0000 80 chr2:162016944-162017024 1.0000 80 chr19:55897288-55897368 1.0000 80 chr9:132816226-132816306 1.0000 80 chr14:39639624-39639704 1.0000 80 chr18:47018756-47018836 1.0000 80 chr8:581013-581093 1.0000 80 chr12:120966864-12096694 1.0000 80 chr12:54718961-54719041 1.0000 80 chr7:135194658-135194738 1.0000 80 chrX:122866803-122866883 1.0000 80 chr8:97247666-97247746 1.0000 80 chr8:1969895-1969975 1.0000 80 chr6:90995509-90995589 1.0000 80 chr9:19380171-19380251 1.0000 80 chr2:242254894-242254974 1.0000 80 chr5:172882403-172882483 1.0000 80 chr7:56174131-56174211 1.0000 80 chr1:161172164-161172244 1.0000 80 chr12:27175494-27175574 1.0000 80 chr6:30585682-30585762 1.0000 80 chr15:74902962-74903042 1.0000 80 chr12:53400285-53400365 1.0000 80 chr2:73596060-73596140 1.0000 80 chr6:80254793-80254873 1.0000 80 chrX:21857723-21857803 1.0000 80 chr1:113161674-113161754 1.0000 80 chr6:135375858-135375938 1.0000 80 chr6:79788197-79788277 1.0000 80 chr5:132362139-132362219 1.0000 80 chr1:25756831-25756911 1.0000 80 chr1:100503686-100503766 1.0000 80 chr7:91570229-91570309 1.0000 80 chr12:52278544-52278624 1.0000 80 chr3:151348981-151349061 1.0000 80 chr19:41945672-41945752 1.0000 80 chr7:154958537-154958617 1.0000 80 chr8:21917544-21917624 1.0000 80 chr5:37668812-37668892 1.0000 80 chr22:36925091-36925171 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TAF9B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF9B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.209 C 0.289 G 0.293 T 0.209 Background letter frequencies (from file dataset with add-one prior applied): A 0.209 C 0.289 G 0.293 T 0.209 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGCTGDB MEME-1 width = 8 sites = 127 llr = 1038 E-value = 7.2e-119 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGDB MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a::::41 pos.-specific C a::a::12 probability G ::a::a23 matrix T ::::a:34 bits 2.3 * * 2.0 * * 1.8 ***** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (11.8 bits) 0.9 ****** 0.7 ****** 0.5 ****** 0.2 ******** 0.0 -------- Multilevel CAGCTGAT consensus TG sequence GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGDB MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:56754182-56754262 35 1.37e-05 AAGACTGAAA CAGCTGAT TTTCGAGAAC chr18:57721096-57721176 39 1.37e-05 CGCTCCATCT CAGCTGAT ACCGCTGACC chr22:50557238-50557318 4 1.37e-05 ttc cagctgat ctcagccagt chr12:51415576-51415656 39 1.37e-05 AGGAAGAGTA CAGCTGAT AATGAAACCA chr1:224618390-224618470 41 1.37e-05 CAGCAGCTAG CAGCTGAT TCTTCATGGT chr6:29935453-29935533 41 1.37e-05 gctgtacaaa cagctgat caggggtgga chr15:101708542-10170862 62 1.37e-05 GAGTTCTGAG CAGCTGAT GCTACCAGGT chr15:63402227-63402307 20 1.37e-05 GACTGGGGCC CAGCTGAT TTGCAGCCAG chr22:33277120-33277200 16 1.37e-05 AGAGATAAGG CAGCTGAT GAGAGATGGG chr19:47818671-47818751 28 1.37e-05 GGAGCTTTGT CAGCTGAT GAGGGAGTGA chr12:124555122-12455520 35 1.37e-05 tgggtggtgc cagctgat gcatcacgtg chr12:31886829-31886909 68 1.37e-05 tgggtggtgc cagctgat ccggc chr7:134832716-134832796 66 1.37e-05 AAAGTGAAAT CAGCTGAT AGTGACA chr20:30287121-30287201 26 1.37e-05 CTAGAAGCAG CAGCTGAT TCAGCTAGAT chr7:7139376-7139456 43 1.37e-05 TGTCTTTAAA CAGCTGAT GGGGAAGCTC chr16:4322990-4323070 18 1.37e-05 tgtgtgtTTG CAGCTGAT CAGATGTCTG chr3:196170977-196171057 46 1.37e-05 tgggtggtgc cagctgat ccatcaagtg chr17:1620859-1620939 23 1.37e-05 GCCCCAGTAA CAGCTGAT TGTTGGAAAG chr15:82439435-82439515 39 1.37e-05 taaacaccaa cagctgat tctggcttca chrX:21857723-21857803 63 2.74e-05 CGCGCGCGGT CAGCTGTT GGCGGTGCAG chr6:4942123-4942203 19 2.74e-05 ATTTTGGAAA CAGCTGTT CCTTATCATT chr1:182764869-182764949 15 2.74e-05 AGACTGGCAT CAGCTGTT TCTCAATGCA chr2:238632457-238632537 33 2.74e-05 ctttgagcac cagctgtt tgccacgcct chrX:48432615-48432695 60 2.74e-05 TAGGGTGCAC CAGCTGTT CAAAAGTCGA chr1:203275508-203275588 39 2.74e-05 ACCTCTCTCC CAGCTGTT TCTAGCTGGT chr10:32428402-32428482 6 2.74e-05 AGAAT CAGCTGTT TCCTGCCCAA chr20:30195247-30195327 54 2.74e-05 GTGGAACCTC CAGCTGTT TGGGCTTGTG chr10:82500180-82500260 46 2.74e-05 GGTTACTCCC CAGCTGTT TCAGGCCACT chr3:81792675-81792755 72 2.74e-05 AAGTTAGAAA CAGCTGTT A chr19:47289559-47289639 38 2.74e-05 GTGTGAGCTA CAGCTGTT TTGGCACGCA chr2:234335409-234335489 27 2.74e-05 tatacaagtt cagctgtt ttctgaagta chrX:106985104-106985184 40 2.74e-05 AGCCCATCTC CAGCTGTT GGGCGGGCTG chr1:154404194-154404274 22 2.74e-05 gaaggaggat cagctgtt ttgggtgact chr1:10460633-10460713 34 2.74e-05 ACCACGATAG CAGCTGTT TTTGGTTTCT chr8:21917544-21917624 60 4.65e-05 GGGCCAGGGG CAGCTGAG CTGTCCCTTC chr7:154958537-154958617 5 4.65e-05 TGCG CAGCTGAG TTGAGTCACG chr6:90995509-90995589 1 4.65e-05 . CAGCTGAG TGCTACAACA chr11:10512288-10512368 58 4.65e-05 AAGCTGTGTC CAGCTGAG CTGAGCCAGG chr22:37638729-37638809 65 4.65e-05 GCATCAGAAT CAGCTGAG GCTGGTGG chr20:3058619-3058699 65 4.65e-05 agtcagacct cagctgag ctatcagc chr16:11227353-11227433 14 4.65e-05 CAGCCCTTGG CAGCTGAG TAACTTAGGA chr5:60704538-60704618 57 4.65e-05 TTCCTCACTA CAGCTGAG GGCTTTCGAA chr5:112420603-112420683 61 4.65e-05 GTCCAGGTTG CAGCTGAG AGAGACTTAA chr2:178618697-178618777 13 4.65e-05 TTGATCTTCA CAGCTGAG GCCCATCTGG chr10:134956862-13495694 55 4.65e-05 TCCTGACAAA CAGCTGAG CTAATCACCA chr15:89631208-89631288 35 4.65e-05 GAGCTACCAG CAGCTGAG CTACCAGCCG chr4:82646360-82646440 40 4.65e-05 CCAGCTGTGA CAGCTGAG GCCACCACCA chr5:37668812-37668892 13 6.57e-05 CTGCAGCTTC CAGCTGGT CATCAGTTAG chr11:69064970-69065050 73 6.57e-05 GGCGCCTGGC CAGCTGGT chr16:126857-126937 17 6.57e-05 GTGCTACAAA CAGCTGGT GGCTTCCAGC chr22:47330933-47331013 64 6.57e-05 GTGTCAGGCA CAGCTGGT CACTGATAT chr17:43109149-43109229 52 6.57e-05 AAGTCCCCAA CAGCTGGT GATCTTATCT chr18:832331-832411 41 6.57e-05 TCAGAGACAC CAGCTGGT GAATGCGTGC chr21:30672632-30672712 43 6.57e-05 TAATTAGAAA CAGCTGGT GCAAATACTC chr8:131515546-131515626 68 6.57e-05 cagctggagt cagctggt catga chrX:37731355-37731435 33 6.57e-05 gctggtgagt cagctggt ggctggctgg chr2:73596060-73596140 7 1.04e-04 agcatc cagctgtg aaccagtgat chr15:74902962-74903042 24 1.04e-04 CGACAGGCTC CAGCTGTG CATCTCTACC chr8:1969895-1969975 10 1.04e-04 ACCCAGCTC CAGCTGTG CAGCCGGGCA chr16:89043487-89043567 11 1.04e-04 GTGAGGCAGC CAGCTGTG TCCCCGTGAT chr12:52299594-52299674 63 1.04e-04 ACTTGTGAAG CAGCTGTG GGGTGGGGGA chr7:86633914-86633994 10 1.04e-04 ATTCTTGCT CAGCTGTG GTGGATTAGA chr3:45587162-45587242 19 1.04e-04 CCCAAAGCCC CAGCTGTG GACAAGAATG chr13:99133411-99133491 66 1.04e-04 AGGATGACTT CAGCTGTG CTCATGA chr6:52382486-52382566 18 1.04e-04 GGCTGCTCTC CAGCTGTG CTGCATTCGC chr2:15870731-15870811 25 1.04e-04 CATTCTTTCC CAGCTGTG CAGGCTGGGC chr6:7166770-7166850 8 1.04e-04 TCATTCC CAGCTGAC GGTTTGTAAC chr1:16490865-16490945 24 1.04e-04 AGTGGCTTCC CAGCTGAC CAGTGATGAA chr11:6589846-6589926 46 1.04e-04 CCTTCCTCCC CAGCTGTG CTGACTCAGC chr18:55487401-55487481 72 1.04e-04 CACAGTGCAG CAGCTGAC T chr12:125120969-12512104 47 1.04e-04 tgggtggtgc cagctgac gcatcacgtg chr14:62161948-62162028 37 1.04e-04 CAGCCCGTCC CAGCTGTG CCTCAGCTGA chr17:71225014-71225094 43 1.04e-04 AGCGTGCCAA CAGCTGAC TGGGCTTTGG chr19:11494936-11495016 46 1.04e-04 CCGCCGGACG CAGCTGAC CAGGCCCTTC chr10:97277416-97277496 63 1.04e-04 ACGTTGTGCA CAGCTGAC TGCACATATG chr5:68596535-68596615 40 1.04e-04 TGAGAAGCTC CAGCTGTG TGTGCAGATC chr3:151348981-151349061 49 1.36e-04 TACAAACAAC CAGCTGAA CAGGTTGAAA chr9:19380171-19380251 30 1.36e-04 CATCTTGAAG CAGCTGAA CGCCTCCGAG chr2:162016944-162017024 34 1.36e-04 AGAGGGAACG CAGCTGAA AGCGTGAACT chr21:38827819-38827899 25 1.36e-04 TTCTTGAATC CAGCTGTC TCTTATCTGT chr6:18585431-18585511 72 1.36e-04 ATGGCCAGCA CAGCTGTC C chr1:46268472-46268552 45 1.36e-04 TGTGGCAGAC CAGCTGAA GCCAGAGGGA chr1:84569182-84569262 18 1.36e-04 gcccagcctt cagctgaa gacagatgag chr19:34850474-34850554 62 1.36e-04 TCCCCCGGAA CAGCTGTC TAAAATCCAT chr12:116561462-11656154 59 1.36e-04 GTTTGAAATG CAGCTGTC TCGTTGGCAT chr10:104421146-10442122 20 1.36e-04 GCCTCGCTCC CAGCTGTC TTTGGGGTGG chr3:194296057-194296137 18 1.36e-04 cacagggagt cagctgtc ttcttgcgct chr17:74102267-74102347 49 1.50e-04 tcagagaagt cagctgta gtaagtcaac chr8:93620178-93620258 36 1.77e-04 CTGTTGAGAC CAGCTGGG CTGTATTAGT chr1:33190890-33190970 13 1.77e-04 CTGCCCCTTC CAGCTGGG TATCAAGATC chr20:2295861-2295941 51 1.77e-04 TCAGACCTCC CAGCTGGG CTGGGCCATG chr7:44645986-44646066 44 1.77e-04 GCGGAGCAAA CAGCTGGG CTCCAGCTGG chr19:46272699-46272779 44 1.77e-04 CTCGGTGGCA CAGCTGGG CCACAGCTGG chr1:2121162-2121242 46 1.77e-04 TGTCAACATC CAGCTGGG TCAGCCTGCA chr1:39864510-39864590 59 1.77e-04 GCCCTTGCAC CAGCTGGG AGTACTGATC chr12:52278544-52278624 7 2.22e-04 tctggt cagctgct ccatcctgac chr6:80254793-80254873 23 2.22e-04 TCAAGCTTCT CAGCTGGC CTCATGTCTC chr6:43445323-43445403 25 2.22e-04 GGCCTGAACG CAGCTGGC AGCGGCGGAA chr6:88433102-88433182 32 2.22e-04 aggtcatgcc cagctggc ctgccacagc chr12:4262882-4262962 63 2.22e-04 ATCTTGTCCT CAGCTGCT TTCAACAAAA chr19:909359-909439 52 2.22e-04 CACCAGGACA CAGCTGGC AGGTAAACAC chr15:45020965-45021045 63 2.22e-04 TCTCGGAAAG CAGCTGGC TTTGAAGAAA chr9:124044293-124044373 48 2.22e-04 CCGCTGGGGC CAGCTGGC AGGGTGGGGC chr16:27558554-27558634 18 2.22e-04 tgatcttagc cagctgct ttaattacca chr15:79471529-79471609 21 2.22e-04 TGCTGGGGCC CAGCTGGC CTCGGCCTGG chr9:98196599-98196679 31 2.22e-04 AGTCTCCTCA CAGCTGCT CACCCCGCTG chr7:66691402-66691482 11 2.22e-04 cttgatggat cagctggc accacccagc chr17:1225482-1225562 37 2.42e-04 aattgaccac cagctgga ttaattgcaa chr1:247634794-247634874 28 2.42e-04 CACTGTGACA CAGCTGGA GAGGACACTC chr12:53689348-53689428 64 2.42e-04 GCTCAAGAAC CAGCTGGA CCAGGTGGG chrX:2595912-2595992 25 2.42e-04 gctctggggt cagctgga ttcactcatg chr1:247634595-247634675 19 2.42e-04 CACCATGACA CAGCTGGA GACGACACTC chr8:131342295-131342375 16 2.42e-04 ATTTTCATTA CAGCTGGA CCCAGCTGGA chr7:25894898-25894978 59 2.42e-04 TCGGCTGTGG CAGCTGGA AGAGAAGGAA chr1:113161674-113161754 25 2.68e-04 GACGCTCCAA CAGCTGCG GCTTCACCCA chr15:69745122-69745202 45 2.94e-04 CCCCTTTCCT CAGCTGCC GCCAAGGTGC chr13:111616766-11161684 58 2.94e-04 CCTGTAGCCT CAGCTGCC TGGCTGATAG chr2:27851885-27851965 54 2.94e-04 GCGGCGTCCG CAGCTGCC GCTGAGCTCC chr16:29302348-29302428 7 2.94e-04 TTTCAG CAGCTGCC ACTCCACCCT chr3:128523163-128523243 43 2.94e-04 tttcagagaa cAGCTGCC CCTTTCCTTT chr14:58637939-58638019 18 2.94e-04 TCAGGAGGAA CAGCTGCC ACACGGTGCT chr22:35773040-35773120 32 3.13e-04 TCCCCTCGTG CAGCTGCA TTTCTGCTGC chr5:172882403-172882483 34 3.23e-04 aagaaccact cagctaat cccttcttga chr14:23398457-23398537 32 3.33e-04 CCTAGTGTGT CAGCTATT TCGGGGACGC chr2:232571965-232572045 42 3.46e-04 CTTAGTTCGA CAGCTAAG TGCGGTGGCG chr5:170814446-170814526 31 3.46e-04 ATATCTTACA CAGCTAAG GGCTGCCGAC chr5:170921691-170921771 19 4.11e-04 GCTGCGATTA CAGCTAAA TTACATTAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGDB MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:56754182-56754262 1.4e-05 34_[+1]_38 chr18:57721096-57721176 1.4e-05 38_[+1]_34 chr22:50557238-50557318 1.4e-05 3_[+1]_69 chr12:51415576-51415656 1.4e-05 38_[+1]_34 chr1:224618390-224618470 1.4e-05 40_[+1]_32 chr6:29935453-29935533 1.4e-05 40_[+1]_32 chr15:101708542-10170862 1.4e-05 61_[+1]_11 chr15:63402227-63402307 1.4e-05 19_[+1]_53 chr22:33277120-33277200 1.4e-05 15_[+1]_57 chr19:47818671-47818751 1.4e-05 27_[+1]_45 chr12:124555122-12455520 1.4e-05 34_[+1]_38 chr12:31886829-31886909 1.4e-05 67_[+1]_5 chr7:134832716-134832796 1.4e-05 65_[+1]_7 chr20:30287121-30287201 1.4e-05 25_[+1]_47 chr7:7139376-7139456 1.4e-05 42_[+1]_30 chr16:4322990-4323070 1.4e-05 17_[+1]_55 chr3:196170977-196171057 1.4e-05 45_[+1]_27 chr17:1620859-1620939 1.4e-05 22_[+1]_50 chr15:82439435-82439515 1.4e-05 38_[+1]_34 chrX:21857723-21857803 2.7e-05 62_[+1]_10 chr6:4942123-4942203 2.7e-05 18_[+1]_54 chr1:182764869-182764949 2.7e-05 14_[+1]_58 chr2:238632457-238632537 2.7e-05 32_[+1]_40 chrX:48432615-48432695 2.7e-05 59_[+1]_13 chr1:203275508-203275588 2.7e-05 38_[+1]_34 chr10:32428402-32428482 2.7e-05 5_[+1]_67 chr20:30195247-30195327 2.7e-05 53_[+1]_19 chr10:82500180-82500260 2.7e-05 45_[+1]_27 chr3:81792675-81792755 2.7e-05 71_[+1]_1 chr19:47289559-47289639 2.7e-05 37_[+1]_35 chr2:234335409-234335489 2.7e-05 26_[+1]_46 chrX:106985104-106985184 2.7e-05 39_[+1]_33 chr1:154404194-154404274 2.7e-05 21_[+1]_51 chr1:10460633-10460713 2.7e-05 33_[+1]_39 chr8:21917544-21917624 4.7e-05 59_[+1]_13 chr7:154958537-154958617 4.7e-05 4_[+1]_68 chr6:90995509-90995589 4.7e-05 [+1]_72 chr11:10512288-10512368 4.7e-05 57_[+1]_15 chr22:37638729-37638809 4.7e-05 64_[+1]_8 chr20:3058619-3058699 4.7e-05 64_[+1]_8 chr16:11227353-11227433 4.7e-05 13_[+1]_59 chr5:60704538-60704618 4.7e-05 56_[+1]_16 chr5:112420603-112420683 4.7e-05 60_[+1]_12 chr2:178618697-178618777 4.7e-05 12_[+1]_60 chr10:134956862-13495694 4.7e-05 54_[+1]_18 chr15:89631208-89631288 4.7e-05 34_[+1]_38 chr4:82646360-82646440 4.7e-05 39_[+1]_33 chr5:37668812-37668892 6.6e-05 12_[+1]_60 chr11:69064970-69065050 6.6e-05 72_[+1] chr16:126857-126937 6.6e-05 16_[+1]_56 chr22:47330933-47331013 6.6e-05 63_[+1]_9 chr17:43109149-43109229 6.6e-05 51_[+1]_21 chr18:832331-832411 6.6e-05 40_[+1]_32 chr21:30672632-30672712 6.6e-05 42_[+1]_30 chr8:131515546-131515626 6.6e-05 67_[+1]_5 chrX:37731355-37731435 6.6e-05 32_[+1]_40 chr2:73596060-73596140 0.0001 6_[+1]_66 chr15:74902962-74903042 0.0001 23_[+1]_49 chr8:1969895-1969975 0.0001 9_[+1]_63 chr16:89043487-89043567 0.0001 10_[+1]_62 chr12:52299594-52299674 0.0001 62_[+1]_10 chr7:86633914-86633994 0.0001 9_[+1]_63 chr3:45587162-45587242 0.0001 18_[+1]_54 chr13:99133411-99133491 0.0001 65_[+1]_7 chr6:52382486-52382566 0.0001 17_[+1]_55 chr2:15870731-15870811 0.0001 24_[+1]_48 chr6:7166770-7166850 0.0001 7_[+1]_65 chr1:16490865-16490945 0.0001 23_[+1]_49 chr11:6589846-6589926 0.0001 45_[+1]_27 chr18:55487401-55487481 0.0001 71_[+1]_1 chr12:125120969-12512104 0.0001 46_[+1]_26 chr14:62161948-62162028 0.0001 36_[+1]_36 chr17:71225014-71225094 0.0001 42_[+1]_30 chr19:11494936-11495016 0.0001 45_[+1]_27 chr10:97277416-97277496 0.0001 62_[+1]_10 chr5:68596535-68596615 0.0001 39_[+1]_33 chr3:151348981-151349061 0.00014 48_[+1]_24 chr9:19380171-19380251 0.00014 29_[+1]_43 chr2:162016944-162017024 0.00014 33_[+1]_39 chr21:38827819-38827899 0.00014 24_[+1]_48 chr6:18585431-18585511 0.00014 71_[+1]_1 chr1:46268472-46268552 0.00014 44_[+1]_28 chr1:84569182-84569262 0.00014 17_[+1]_55 chr19:34850474-34850554 0.00014 61_[+1]_11 chr12:116561462-11656154 0.00014 58_[+1]_14 chr10:104421146-10442122 0.00014 19_[+1]_53 chr3:194296057-194296137 0.00014 17_[+1]_55 chr17:74102267-74102347 0.00015 48_[+1]_24 chr8:93620178-93620258 0.00018 35_[+1]_37 chr1:33190890-33190970 0.00018 12_[+1]_60 chr20:2295861-2295941 0.00018 50_[+1]_22 chr7:44645986-44646066 0.00018 43_[+1]_29 chr19:46272699-46272779 0.00018 43_[+1]_29 chr1:2121162-2121242 0.00018 45_[+1]_27 chr1:39864510-39864590 0.00018 58_[+1]_14 chr12:52278544-52278624 0.00022 6_[+1]_66 chr6:80254793-80254873 0.00022 22_[+1]_50 chr6:43445323-43445403 0.00022 24_[+1]_48 chr6:88433102-88433182 0.00022 31_[+1]_41 chr12:4262882-4262962 0.00022 62_[+1]_10 chr19:909359-909439 0.00022 51_[+1]_21 chr15:45020965-45021045 0.00022 62_[+1]_10 chr9:124044293-124044373 0.00022 47_[+1]_25 chr16:27558554-27558634 0.00022 17_[+1]_55 chr15:79471529-79471609 0.00022 20_[+1]_52 chr9:98196599-98196679 0.00022 30_[+1]_42 chr7:66691402-66691482 0.00022 10_[+1]_62 chr17:1225482-1225562 0.00024 36_[+1]_36 chr1:247634794-247634874 0.00024 27_[+1]_45 chr12:53689348-53689428 0.00024 63_[+1]_9 chrX:2595912-2595992 0.00024 24_[+1]_48 chr1:247634595-247634675 0.00024 18_[+1]_54 chr8:131342295-131342375 0.00024 15_[+1]_57 chr7:25894898-25894978 0.00024 58_[+1]_14 chr1:113161674-113161754 0.00027 24_[+1]_48 chr15:69745122-69745202 0.00029 44_[+1]_28 chr13:111616766-11161684 0.00029 57_[+1]_15 chr2:27851885-27851965 0.00029 53_[+1]_19 chr16:29302348-29302428 0.00029 6_[+1]_66 chr3:128523163-128523243 0.00029 42_[+1]_30 chr14:58637939-58638019 0.00029 17_[+1]_55 chr22:35773040-35773120 0.00031 31_[+1]_41 chr5:172882403-172882483 0.00032 33_[+1]_39 chr14:23398457-23398537 0.00033 31_[+1]_41 chr2:232571965-232572045 0.00035 41_[+1]_31 chr5:170814446-170814526 0.00035 30_[+1]_42 chr5:170921691-170921771 0.00041 18_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGDB MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGDB width=8 seqs=127 chr12:56754182-56754262 ( 35) CAGCTGAT 1 chr18:57721096-57721176 ( 39) CAGCTGAT 1 chr22:50557238-50557318 ( 4) CAGCTGAT 1 chr12:51415576-51415656 ( 39) CAGCTGAT 1 chr1:224618390-224618470 ( 41) CAGCTGAT 1 chr6:29935453-29935533 ( 41) CAGCTGAT 1 chr15:101708542-10170862 ( 62) CAGCTGAT 1 chr15:63402227-63402307 ( 20) CAGCTGAT 1 chr22:33277120-33277200 ( 16) CAGCTGAT 1 chr19:47818671-47818751 ( 28) CAGCTGAT 1 chr12:124555122-12455520 ( 35) CAGCTGAT 1 chr12:31886829-31886909 ( 68) CAGCTGAT 1 chr7:134832716-134832796 ( 66) CAGCTGAT 1 chr20:30287121-30287201 ( 26) CAGCTGAT 1 chr7:7139376-7139456 ( 43) CAGCTGAT 1 chr16:4322990-4323070 ( 18) CAGCTGAT 1 chr3:196170977-196171057 ( 46) CAGCTGAT 1 chr17:1620859-1620939 ( 23) CAGCTGAT 1 chr15:82439435-82439515 ( 39) CAGCTGAT 1 chrX:21857723-21857803 ( 63) CAGCTGTT 1 chr6:4942123-4942203 ( 19) CAGCTGTT 1 chr1:182764869-182764949 ( 15) CAGCTGTT 1 chr2:238632457-238632537 ( 33) CAGCTGTT 1 chrX:48432615-48432695 ( 60) CAGCTGTT 1 chr1:203275508-203275588 ( 39) CAGCTGTT 1 chr10:32428402-32428482 ( 6) CAGCTGTT 1 chr20:30195247-30195327 ( 54) CAGCTGTT 1 chr10:82500180-82500260 ( 46) CAGCTGTT 1 chr3:81792675-81792755 ( 72) CAGCTGTT 1 chr19:47289559-47289639 ( 38) CAGCTGTT 1 chr2:234335409-234335489 ( 27) CAGCTGTT 1 chrX:106985104-106985184 ( 40) CAGCTGTT 1 chr1:154404194-154404274 ( 22) CAGCTGTT 1 chr1:10460633-10460713 ( 34) CAGCTGTT 1 chr8:21917544-21917624 ( 60) CAGCTGAG 1 chr7:154958537-154958617 ( 5) CAGCTGAG 1 chr6:90995509-90995589 ( 1) CAGCTGAG 1 chr11:10512288-10512368 ( 58) CAGCTGAG 1 chr22:37638729-37638809 ( 65) CAGCTGAG 1 chr20:3058619-3058699 ( 65) CAGCTGAG 1 chr16:11227353-11227433 ( 14) CAGCTGAG 1 chr5:60704538-60704618 ( 57) CAGCTGAG 1 chr5:112420603-112420683 ( 61) CAGCTGAG 1 chr2:178618697-178618777 ( 13) CAGCTGAG 1 chr10:134956862-13495694 ( 55) CAGCTGAG 1 chr15:89631208-89631288 ( 35) CAGCTGAG 1 chr4:82646360-82646440 ( 40) CAGCTGAG 1 chr5:37668812-37668892 ( 13) CAGCTGGT 1 chr11:69064970-69065050 ( 73) CAGCTGGT 1 chr16:126857-126937 ( 17) CAGCTGGT 1 chr22:47330933-47331013 ( 64) CAGCTGGT 1 chr17:43109149-43109229 ( 52) CAGCTGGT 1 chr18:832331-832411 ( 41) CAGCTGGT 1 chr21:30672632-30672712 ( 43) CAGCTGGT 1 chr8:131515546-131515626 ( 68) CAGCTGGT 1 chrX:37731355-37731435 ( 33) CAGCTGGT 1 chr2:73596060-73596140 ( 7) CAGCTGTG 1 chr15:74902962-74903042 ( 24) CAGCTGTG 1 chr8:1969895-1969975 ( 10) CAGCTGTG 1 chr16:89043487-89043567 ( 11) CAGCTGTG 1 chr12:52299594-52299674 ( 63) CAGCTGTG 1 chr7:86633914-86633994 ( 10) CAGCTGTG 1 chr3:45587162-45587242 ( 19) CAGCTGTG 1 chr13:99133411-99133491 ( 66) CAGCTGTG 1 chr6:52382486-52382566 ( 18) CAGCTGTG 1 chr2:15870731-15870811 ( 25) CAGCTGTG 1 chr6:7166770-7166850 ( 8) CAGCTGAC 1 chr1:16490865-16490945 ( 24) CAGCTGAC 1 chr11:6589846-6589926 ( 46) CAGCTGTG 1 chr18:55487401-55487481 ( 72) CAGCTGAC 1 chr12:125120969-12512104 ( 47) CAGCTGAC 1 chr14:62161948-62162028 ( 37) CAGCTGTG 1 chr17:71225014-71225094 ( 43) CAGCTGAC 1 chr19:11494936-11495016 ( 46) CAGCTGAC 1 chr10:97277416-97277496 ( 63) CAGCTGAC 1 chr5:68596535-68596615 ( 40) CAGCTGTG 1 chr3:151348981-151349061 ( 49) CAGCTGAA 1 chr9:19380171-19380251 ( 30) CAGCTGAA 1 chr2:162016944-162017024 ( 34) CAGCTGAA 1 chr21:38827819-38827899 ( 25) CAGCTGTC 1 chr6:18585431-18585511 ( 72) CAGCTGTC 1 chr1:46268472-46268552 ( 45) CAGCTGAA 1 chr1:84569182-84569262 ( 18) CAGCTGAA 1 chr19:34850474-34850554 ( 62) CAGCTGTC 1 chr12:116561462-11656154 ( 59) CAGCTGTC 1 chr10:104421146-10442122 ( 20) CAGCTGTC 1 chr3:194296057-194296137 ( 18) CAGCTGTC 1 chr17:74102267-74102347 ( 49) CAGCTGTA 1 chr8:93620178-93620258 ( 36) CAGCTGGG 1 chr1:33190890-33190970 ( 13) CAGCTGGG 1 chr20:2295861-2295941 ( 51) CAGCTGGG 1 chr7:44645986-44646066 ( 44) CAGCTGGG 1 chr19:46272699-46272779 ( 44) CAGCTGGG 1 chr1:2121162-2121242 ( 46) CAGCTGGG 1 chr1:39864510-39864590 ( 59) CAGCTGGG 1 chr12:52278544-52278624 ( 7) CAGCTGCT 1 chr6:80254793-80254873 ( 23) CAGCTGGC 1 chr6:43445323-43445403 ( 25) CAGCTGGC 1 chr6:88433102-88433182 ( 32) CAGCTGGC 1 chr12:4262882-4262962 ( 63) CAGCTGCT 1 chr19:909359-909439 ( 52) CAGCTGGC 1 chr15:45020965-45021045 ( 63) CAGCTGGC 1 chr9:124044293-124044373 ( 48) CAGCTGGC 1 chr16:27558554-27558634 ( 18) CAGCTGCT 1 chr15:79471529-79471609 ( 21) CAGCTGGC 1 chr9:98196599-98196679 ( 31) CAGCTGCT 1 chr7:66691402-66691482 ( 11) CAGCTGGC 1 chr17:1225482-1225562 ( 37) CAGCTGGA 1 chr1:247634794-247634874 ( 28) CAGCTGGA 1 chr12:53689348-53689428 ( 64) CAGCTGGA 1 chrX:2595912-2595992 ( 25) CAGCTGGA 1 chr1:247634595-247634675 ( 19) CAGCTGGA 1 chr8:131342295-131342375 ( 16) CAGCTGGA 1 chr7:25894898-25894978 ( 59) CAGCTGGA 1 chr1:113161674-113161754 ( 25) CAGCTGCG 1 chr15:69745122-69745202 ( 45) CAGCTGCC 1 chr13:111616766-11161684 ( 58) CAGCTGCC 1 chr2:27851885-27851965 ( 54) CAGCTGCC 1 chr16:29302348-29302428 ( 7) CAGCTGCC 1 chr3:128523163-128523243 ( 43) CAGCTGCC 1 chr14:58637939-58638019 ( 18) CAGCTGCC 1 chr22:35773040-35773120 ( 32) CAGCTGCA 1 chr5:172882403-172882483 ( 34) CAGCTAAT 1 chr14:23398457-23398537 ( 32) CAGCTATT 1 chr2:232571965-232572045 ( 42) CAGCTAAG 1 chr5:170814446-170814526 ( 31) CAGCTAAG 1 chr5:170921691-170921771 ( 19) CAGCTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGDB MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.89709 E= 7.2e-119 -1363 179 -1363 -1363 226 -1363 -1363 -1363 -1363 -1363 177 -1363 -1363 179 -1363 -1363 -1363 -1363 -1363 226 -241 -1363 171 -1363 86 -161 -26 44 -82 -44 -5 88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGDB MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 7.2e-119 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.039370 0.000000 0.960630 0.000000 0.377953 0.094488 0.244094 0.283465 0.118110 0.212598 0.283465 0.385827 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGDB MEME-1 regular expression -------------------------------------------------------------------------------- CAGCTG[ATG][TGC] -------------------------------------------------------------------------------- Time 4.96 secs. ******************************************************************************** ******************************************************************************** MOTIF MTGASTCA MEME-2 width = 8 sites = 58 llr = 516 E-value = 2.8e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::a1:1a pos.-specific C 3:::319: probability G 2:a:6::: matrix T :a:::9:: bits 2.3 * * * 2.0 * * * 1.8 *** * * 1.6 *** *** Relative 1.4 *** *** Entropy 1.1 *** *** (12.8 bits) 0.9 *** *** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGAGTCA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:90995509-90995589 24 9.89e-06 CAACAGCTGC ATGAGTCA GCAAGCACTG chr6:4942123-4942203 66 9.89e-06 TTACCTTTTC ATGAGTCA TCAGTTA chr5:39399768-39399848 52 9.89e-06 GGAAGACTGC ATGAGTCA TCTTAGAATG chrX:2595912-2595992 40 9.89e-06 ggattcactc atgagtca gtgctcagct chr2:88899790-88899870 62 9.89e-06 AAGCATAGGA ATGAGTCA CCCGATAGTC chr6:52382486-52382566 52 9.89e-06 TCACACACAC ATGAGTCA TCTCACTGCT chr9:124044293-124044373 27 9.89e-06 GGGGAAGCGG ATGAGTCA TGCCCGCTGG chr3:81792675-81792755 24 9.89e-06 GCAAGTCATA ATGAGTCA CCTCACTTTA chr6:161695234-161695314 3 9.89e-06 AT ATGAGTCA CTCCCTTCCC chr2:10638120-10638200 1 9.89e-06 . ATGAGTCA CCGCGCACAc chr12:52278544-52278624 48 3.33e-05 ctgctttgac ctgagtca tcccagtcac chr21:38827819-38827899 7 3.33e-05 GAACCG CTGAGTCA TTCTTGAATC chr5:158729378-158729458 31 3.33e-05 gtgaccaggg atgactca gatggaacag chr11:10512288-10512368 22 3.33e-05 CCAGAATCCG CTGAGTCA TGCTGAGGTC chr18:57721096-57721176 5 3.33e-05 CATG CTGAGTCA CTGTAGGATG chr3:45587162-45587242 34 3.33e-05 GTGGACAAGA ATGACTCA GGTCCCTTGG chr22:35768039-35768119 32 3.33e-05 TCTGTTTTCG CTGAGTCA CGGTCCCGGT chr10:32428402-32428482 39 3.33e-05 GTGGCTCAGG CTGAGTCA TCCTTTTCCC chr3:72319293-72319373 15 3.33e-05 caaaagcaaa atgactca gagaagtgac chr12:31886829-31886909 4 3.33e-05 gtg ctgagtca cttcctgggt chr15:72529820-72529900 71 3.33e-05 AAACCCAGTA ATGACTCA GC chr16:27558554-27558634 46 3.33e-05 gctgctagga atgactca cagatgtcta chr2:234335409-234335489 2 3.33e-05 g ctgagtca cagggtatat chr19:34850474-34850554 21 3.33e-05 GCCGGTCAAC ATGACTCA GCATCCTCGG chr15:79471529-79471609 43 3.33e-05 GCCTGGGAGG ATGACTCA CAGCAGCGGG chr14:58637939-58638019 55 3.33e-05 CGACCTGATG CTGAGTCA GCAGAAGACC chr21:30672632-30672712 6 3.33e-05 GGTTG CTGAGTCA TTCGCCCCAG chr8:131515546-131515626 44 3.33e-05 acgagacctg ctgagtca tgagtccagc chr17:71225014-71225094 65 3.33e-05 CTTTGGGCTG CTGAGTCA CTCTAACC chr3:194296057-194296137 34 3.33e-05 tcttcttgcg ctgagtca gttcctgggt chr6:80254793-80254873 69 6.07e-05 AACTGAACTT CTGACTCA TCAT chr8:581013-581093 50 6.07e-05 ATTGACAGAG CTGACTCA TACCCTCCCA chr11:64622563-64622643 32 6.07e-05 ACCACGCAGG GTGAGTCA CCACATTCCC chr22:47330933-47331013 41 6.07e-05 GGTTTTCAGG GTGAGTCA TCTGTGTGTC chr19:49379674-49379754 17 6.07e-05 ggtaaggagt gtgagtca tctccaatga chr2:15870731-15870811 9 6.07e-05 AGACACTG CTGACTCA TTCTTTCCCA chr11:6589846-6589926 54 6.07e-05 CCCAGCTGTG CTGACTCA GCACTCCATG chr13:111607679-11160775 51 6.07e-05 catcccctgc ctgactca gaggctctga chr7:66691402-66691482 72 6.07e-05 cacccaggaa ctgactca g chr4:82646360-82646440 73 6.07e-05 AGCTGACTGA GTGAGTCA chr8:1969895-1969975 71 8.14e-05 CCGGGCAGAG ATGAATCA GC chr1:84569182-84569262 39 8.14e-05 agatgagaga gtgactca gcaaacagtg chr16:12131026-12131106 12 8.14e-05 ctctatcgca gtgactca gctctgccac chr1:224618390-224618470 6 8.14e-05 AACAA ATGAATCA GCTAGAAGTT chr1:33190890-33190970 52 8.14e-05 GTGTTGGTGA GTGACTCA GCGCTTTCCT chr15:101708542-10170862 25 8.14e-05 GTGGGACCTG GTGACTCA CGGGATGTGG chr1:31944533-31944613 19 8.14e-05 ggtgacaggg gtgactca agatggagca chr8:131342295-131342375 35 8.14e-05 CCAGCTGGAA ATGAATCA CTCCCACACA chr10:97277416-97277496 18 8.14e-05 tatttgtaga atgaatCA CACCAGAGCA chr12:116561462-11656154 24 9.84e-05 TGCTATTACT ATGAGTAA TCCTTGCAGC chr16:11227353-11227433 56 1.12e-04 ACAGTGTGCT ATGAGCCA GCTGAGCTGA chr12:124555122-12455520 6 1.12e-04 atcag atgagcca gtttatgcat chr3:196170977-196171057 17 1.12e-04 agaagatcag atgagcca gtttatccat chrX:37731355-37731435 72 1.39e-04 ctcagctggg atgactaa g chr7:154958537-154958617 13 1.81e-04 CGCAGCTGAG TTGAGTCA CGCTGCCTGC chr20:49574998-49575078 70 1.81e-04 CATGGCGGAA CTGAGCCA GAT chr2:162016944-162017024 54 2.01e-04 CGTGAACTGT GTGAGTAA GAAACTTTGT chr7:53879505-53879585 69 2.49e-04 gtaagagaga gtgagcca cagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:90995509-90995589 9.9e-06 23_[+2]_49 chr6:4942123-4942203 9.9e-06 65_[+2]_7 chr5:39399768-39399848 9.9e-06 51_[+2]_21 chrX:2595912-2595992 9.9e-06 39_[+2]_33 chr2:88899790-88899870 9.9e-06 61_[+2]_11 chr6:52382486-52382566 9.9e-06 51_[+2]_21 chr9:124044293-124044373 9.9e-06 26_[+2]_46 chr3:81792675-81792755 9.9e-06 23_[+2]_49 chr6:161695234-161695314 9.9e-06 2_[+2]_70 chr2:10638120-10638200 9.9e-06 [+2]_72 chr12:52278544-52278624 3.3e-05 47_[+2]_25 chr21:38827819-38827899 3.3e-05 6_[+2]_66 chr5:158729378-158729458 3.3e-05 30_[+2]_42 chr11:10512288-10512368 3.3e-05 21_[+2]_51 chr18:57721096-57721176 3.3e-05 4_[+2]_68 chr3:45587162-45587242 3.3e-05 33_[+2]_39 chr22:35768039-35768119 3.3e-05 31_[+2]_41 chr10:32428402-32428482 3.3e-05 38_[+2]_34 chr3:72319293-72319373 3.3e-05 14_[+2]_58 chr12:31886829-31886909 3.3e-05 3_[+2]_69 chr15:72529820-72529900 3.3e-05 70_[+2]_2 chr16:27558554-27558634 3.3e-05 45_[+2]_27 chr2:234335409-234335489 3.3e-05 1_[+2]_71 chr19:34850474-34850554 3.3e-05 20_[+2]_52 chr15:79471529-79471609 3.3e-05 42_[+2]_30 chr14:58637939-58638019 3.3e-05 54_[+2]_18 chr21:30672632-30672712 3.3e-05 5_[+2]_67 chr8:131515546-131515626 3.3e-05 43_[+2]_29 chr17:71225014-71225094 3.3e-05 64_[+2]_8 chr3:194296057-194296137 3.3e-05 33_[+2]_39 chr6:80254793-80254873 6.1e-05 68_[+2]_4 chr8:581013-581093 6.1e-05 49_[+2]_23 chr11:64622563-64622643 6.1e-05 31_[+2]_41 chr22:47330933-47331013 6.1e-05 40_[+2]_32 chr19:49379674-49379754 6.1e-05 16_[+2]_56 chr2:15870731-15870811 6.1e-05 8_[+2]_64 chr11:6589846-6589926 6.1e-05 53_[+2]_19 chr13:111607679-11160775 6.1e-05 50_[+2]_22 chr7:66691402-66691482 6.1e-05 71_[+2]_1 chr4:82646360-82646440 6.1e-05 72_[+2] chr8:1969895-1969975 8.1e-05 70_[+2]_2 chr1:84569182-84569262 8.1e-05 38_[+2]_34 chr16:12131026-12131106 8.1e-05 11_[+2]_61 chr1:224618390-224618470 8.1e-05 5_[+2]_67 chr1:33190890-33190970 8.1e-05 51_[+2]_21 chr15:101708542-10170862 8.1e-05 24_[+2]_48 chr1:31944533-31944613 8.1e-05 18_[+2]_54 chr8:131342295-131342375 8.1e-05 34_[+2]_38 chr10:97277416-97277496 8.1e-05 17_[+2]_55 chr12:116561462-11656154 9.8e-05 23_[+2]_49 chr16:11227353-11227433 0.00011 55_[+2]_17 chr12:124555122-12455520 0.00011 5_[+2]_67 chr3:196170977-196171057 0.00011 16_[+2]_56 chrX:37731355-37731435 0.00014 71_[+2]_1 chr7:154958537-154958617 0.00018 12_[+2]_60 chr20:49574998-49575078 0.00018 69_[+2]_3 chr2:162016944-162017024 0.0002 53_[+2]_19 chr7:53879505-53879585 0.00025 68_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGASTCA width=8 seqs=58 chr6:90995509-90995589 ( 24) ATGAGTCA 1 chr6:4942123-4942203 ( 66) ATGAGTCA 1 chr5:39399768-39399848 ( 52) ATGAGTCA 1 chrX:2595912-2595992 ( 40) ATGAGTCA 1 chr2:88899790-88899870 ( 62) ATGAGTCA 1 chr6:52382486-52382566 ( 52) ATGAGTCA 1 chr9:124044293-124044373 ( 27) ATGAGTCA 1 chr3:81792675-81792755 ( 24) ATGAGTCA 1 chr6:161695234-161695314 ( 3) ATGAGTCA 1 chr2:10638120-10638200 ( 1) ATGAGTCA 1 chr12:52278544-52278624 ( 48) CTGAGTCA 1 chr21:38827819-38827899 ( 7) CTGAGTCA 1 chr5:158729378-158729458 ( 31) ATGACTCA 1 chr11:10512288-10512368 ( 22) CTGAGTCA 1 chr18:57721096-57721176 ( 5) CTGAGTCA 1 chr3:45587162-45587242 ( 34) ATGACTCA 1 chr22:35768039-35768119 ( 32) CTGAGTCA 1 chr10:32428402-32428482 ( 39) CTGAGTCA 1 chr3:72319293-72319373 ( 15) ATGACTCA 1 chr12:31886829-31886909 ( 4) CTGAGTCA 1 chr15:72529820-72529900 ( 71) ATGACTCA 1 chr16:27558554-27558634 ( 46) ATGACTCA 1 chr2:234335409-234335489 ( 2) CTGAGTCA 1 chr19:34850474-34850554 ( 21) ATGACTCA 1 chr15:79471529-79471609 ( 43) ATGACTCA 1 chr14:58637939-58638019 ( 55) CTGAGTCA 1 chr21:30672632-30672712 ( 6) CTGAGTCA 1 chr8:131515546-131515626 ( 44) CTGAGTCA 1 chr17:71225014-71225094 ( 65) CTGAGTCA 1 chr3:194296057-194296137 ( 34) CTGAGTCA 1 chr6:80254793-80254873 ( 69) CTGACTCA 1 chr8:581013-581093 ( 50) CTGACTCA 1 chr11:64622563-64622643 ( 32) GTGAGTCA 1 chr22:47330933-47331013 ( 41) GTGAGTCA 1 chr19:49379674-49379754 ( 17) GTGAGTCA 1 chr2:15870731-15870811 ( 9) CTGACTCA 1 chr11:6589846-6589926 ( 54) CTGACTCA 1 chr13:111607679-11160775 ( 51) CTGACTCA 1 chr7:66691402-66691482 ( 72) CTGACTCA 1 chr4:82646360-82646440 ( 73) GTGAGTCA 1 chr8:1969895-1969975 ( 71) ATGAATCA 1 chr1:84569182-84569262 ( 39) GTGACTCA 1 chr16:12131026-12131106 ( 12) GTGACTCA 1 chr1:224618390-224618470 ( 6) ATGAATCA 1 chr1:33190890-33190970 ( 52) GTGACTCA 1 chr15:101708542-10170862 ( 25) GTGACTCA 1 chr1:31944533-31944613 ( 19) GTGACTCA 1 chr8:131342295-131342375 ( 35) ATGAATCA 1 chr10:97277416-97277496 ( 18) ATGAATCA 1 chr12:116561462-11656154 ( 24) ATGAGTAA 1 chr16:11227353-11227433 ( 56) ATGAGCCA 1 chr12:124555122-12455520 ( 6) ATGAGCCA 1 chr3:196170977-196171057 ( 17) ATGAGCCA 1 chrX:37731355-37731435 ( 72) ATGACTAA 1 chr7:154958537-154958617 ( 13) TTGAGTCA 1 chr20:49574998-49575078 ( 70) CTGAGCCA 1 chr2:162016944-162017024 ( 54) GTGAGTAA 1 chr7:53879505-53879585 ( 69) GTGAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2669 E= 2.8e-040 110 25 -63 -360 -1250 -1250 -1250 226 -1250 -1250 177 -1250 226 -1250 -1250 -1250 -160 18 104 -1250 -1250 -175 -1250 213 -201 171 -1250 -1250 226 -1250 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 2.8e-040 0.448276 0.344828 0.189655 0.017241 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.068966 0.327586 0.603448 0.000000 0.000000 0.086207 0.000000 0.913793 0.051724 0.948276 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 regular expression -------------------------------------------------------------------------------- [AC]TGA[GC]TCA -------------------------------------------------------------------------------- Time 8.48 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGATGGC MEME-3 width = 8 sites = 21 llr = 210 E-value = 5.1e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGATGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A a91a:::: pos.-specific C ::1::::a probability G :17::aa: matrix T ::::a::: bits 2.3 * ** 2.0 * ** 1.8 * ***** 1.6 ** ***** Relative 1.4 ** ***** Entropy 1.1 ** ***** (14.4 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGATGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:161172164-161172244 9 1.39e-05 GCCGGAGT AAGATGGC GGCGCTGAGG chr6:43445323-43445403 7 1.39e-05 CGCGGC AAGATGGC GGCCTGAACG chr17:28443850-28443930 9 1.39e-05 ACGGGAGC AAGATGGC GATTCCGGGC chr17:28804442-28804522 7 1.39e-05 ACGACA AAGATGGC GGCAGGGACC chr17:73257923-73258003 56 1.39e-05 GTGGCCAGCC AAGATGGC TGCCCCCGCA chr19:38865416-38865496 12 1.39e-05 CGCATCACGC AAGATGGC GGCCGCGGCG chr11:71640089-71640169 16 1.39e-05 GCGAGCCGTG AAGATGGC GGCAGTGGTG chr2:27851885-27851965 38 1.39e-05 GGCCAGGAGG AAGATGGC GGCGTCCGCA chr9:32552333-32552413 4 1.39e-05 TAA AAGATGGC TGCTGGCGCC chr1:161129293-161129373 18 1.39e-05 GGGACCAACA AAGATGGC GGCGGCCCCT chr2:156087830-156087910 6 1.39e-05 gagcc aagatggc gccactccac chr10:105127689-10512776 55 1.39e-05 GCTCAGCCGC AAGATGGC GGCGCTGGCG chr14:92588296-92588376 33 2.38e-05 CTCCAGCTCC AAAATGGC GGCTGCCACT chr7:77325768-77325848 16 2.38e-05 ACAGGAGCGC AAAATGGC GGAACCGCCG chr2:67624466-67624546 6 2.38e-05 CGACC AAAATGGC GGCTGCCGTT chr12:27175494-27175574 16 3.74e-05 CTGCGGTAGG AACATGGC GGATCGGCTC chrX:24073025-24073105 58 3.74e-05 CTCTTTTGGC AACATGGC GGGCGGAGAA chr12:53689348-53689428 1 3.74e-05 . AACATGGC GCAGTCTATT chr18:47018756-47018836 13 5.69e-05 CCCCGAAGCC AGGATGGC GGCGATGGCA chr5:180670794-180670874 41 5.69e-05 TGCAGCGACG AGGATGGC ACTGGATGGC chr11:62341196-62341276 57 5.69e-05 ACTCGGGCAA AGGATGGC GGTGGATAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161172164-161172244 1.4e-05 8_[+3]_64 chr6:43445323-43445403 1.4e-05 6_[+3]_66 chr17:28443850-28443930 1.4e-05 8_[+3]_64 chr17:28804442-28804522 1.4e-05 6_[+3]_66 chr17:73257923-73258003 1.4e-05 55_[+3]_17 chr19:38865416-38865496 1.4e-05 11_[+3]_61 chr11:71640089-71640169 1.4e-05 15_[+3]_57 chr2:27851885-27851965 1.4e-05 37_[+3]_35 chr9:32552333-32552413 1.4e-05 3_[+3]_69 chr1:161129293-161129373 1.4e-05 17_[+3]_55 chr2:156087830-156087910 1.4e-05 5_[+3]_67 chr10:105127689-10512776 1.4e-05 54_[+3]_18 chr14:92588296-92588376 2.4e-05 32_[+3]_40 chr7:77325768-77325848 2.4e-05 15_[+3]_57 chr2:67624466-67624546 2.4e-05 5_[+3]_67 chr12:27175494-27175574 3.7e-05 15_[+3]_57 chrX:24073025-24073105 3.7e-05 57_[+3]_15 chr12:53689348-53689428 3.7e-05 [+3]_72 chr18:47018756-47018836 5.7e-05 12_[+3]_60 chr5:180670794-180670874 5.7e-05 40_[+3]_32 chr11:62341196-62341276 5.7e-05 56_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGATGGC width=8 seqs=21 chr1:161172164-161172244 ( 9) AAGATGGC 1 chr6:43445323-43445403 ( 7) AAGATGGC 1 chr17:28443850-28443930 ( 9) AAGATGGC 1 chr17:28804442-28804522 ( 7) AAGATGGC 1 chr17:73257923-73258003 ( 56) AAGATGGC 1 chr19:38865416-38865496 ( 12) AAGATGGC 1 chr11:71640089-71640169 ( 16) AAGATGGC 1 chr2:27851885-27851965 ( 38) AAGATGGC 1 chr9:32552333-32552413 ( 4) AAGATGGC 1 chr1:161129293-161129373 ( 18) AAGATGGC 1 chr2:156087830-156087910 ( 6) AAGATGGC 1 chr10:105127689-10512776 ( 55) AAGATGGC 1 chr14:92588296-92588376 ( 33) AAAATGGC 1 chr7:77325768-77325848 ( 16) AAAATGGC 1 chr2:67624466-67624546 ( 6) AAAATGGC 1 chr12:27175494-27175574 ( 16) AACATGGC 1 chrX:24073025-24073105 ( 58) AACATGGC 1 chr12:53689348-53689428 ( 1) AACATGGC 1 chr18:47018756-47018836 ( 13) AGGATGGC 1 chr5:180670794-180670874 ( 41) AGGATGGC 1 chr11:62341196-62341276 ( 57) AGGATGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 5.1e-007 226 -1104 -1104 -1104 204 -1104 -103 -1104 -55 -102 129 -1104 226 -1104 -1104 -1104 -1104 -1104 -1104 226 -1104 -1104 177 -1104 -1104 -1104 177 -1104 -1104 179 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 5.1e-007 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.142857 0.142857 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-3 regular expression -------------------------------------------------------------------------------- AAGATGGC -------------------------------------------------------------------------------- Time 11.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATYTT MEME-4 width = 8 sites = 22 llr = 212 E-value = 1.0e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATYTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:a:::: pos.-specific C 19a::5:: probability G 9:::1::: matrix T ::::95aa bits 2.3 * ** 2.0 * ** 1.8 ** ** 1.6 *** ** Relative 1.4 ***** ** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCATCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:82868217-82868297 14 9.76e-06 CACTGCCGCC GCCATTTT GTGTCTGTGG chr11:77531722-77531802 34 9.76e-06 cgccgccgtc gccATTTT GAACTGGAGG chr1:150336191-150336271 3 9.76e-06 CA GCCATTTT GTCGCGCGTT chr5:170814446-170814526 49 9.76e-06 GGCTGCCGAC GCCATTTT GCAGGGTGGG chr19:5978019-5978099 70 9.76e-06 CGCCAGGTCC GCCATTTT ACT chr6:135375858-135375938 72 2.33e-05 ACCCCTATGC GCCATCTT G chr1:113161674-113161754 57 2.33e-05 GCCACGGTCC GCCATCTT GCCGCTATCG chrX:122866803-122866883 65 2.33e-05 AGCCGCGGCC GCCATCTT CCTCTCAC chr16:2827509-2827589 68 2.33e-05 AGTCGTGGCC GCCATCTT GGGCA chr7:99716931-99717011 33 2.33e-05 GGCGCTCGGC GCCATCTT GGCCCCGCCC chr1:160232162-160232242 67 2.33e-05 caacgccgcc gccatctt acactg chr12:108954863-10895494 63 2.33e-05 GGCCGCAGTC GCCATCTT GCGCTTCTAA chr1:100715304-100715384 68 2.33e-05 ACGGACTGCA GCCATCTT ACCCC chr6:42185545-42185625 38 2.33e-05 TGTCCGCGCC GCCATCTT GCCGGTCCCG chr14:91976586-91976666 38 2.33e-05 CAAAACCGCC GCCATCTT GGTTCGCCCC chr6:30585682-30585762 53 3.03e-05 CTCTTCGAAA GACATTTT GCACAACCTC chr8:131342295-131342375 3 3.03e-05 AG GACATTTT CATTACAGCT chr12:31886829-31886909 43 4.40e-05 gatcagatta gccagttt atccatctgg chr12:125120969-12512104 22 4.40e-05 gatcagagga gccagttt atgcatctgg chr3:194296057-194296137 73 4.40e-05 gatcagatga gccagttt chr17:71225014-71225094 22 5.36e-05 TCCTCACACA CCCATTTT ATCAGCGTGC chr6:18585431-18585511 19 9.56e-05 TTTATCTCCC CCCATCTT CCTGTCATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:82868217-82868297 9.8e-06 13_[+4]_59 chr11:77531722-77531802 9.8e-06 33_[+4]_39 chr1:150336191-150336271 9.8e-06 2_[+4]_70 chr5:170814446-170814526 9.8e-06 48_[+4]_24 chr19:5978019-5978099 9.8e-06 69_[+4]_3 chr6:135375858-135375938 2.3e-05 71_[+4]_1 chr1:113161674-113161754 2.3e-05 56_[+4]_16 chrX:122866803-122866883 2.3e-05 64_[+4]_8 chr16:2827509-2827589 2.3e-05 67_[+4]_5 chr7:99716931-99717011 2.3e-05 32_[+4]_40 chr1:160232162-160232242 2.3e-05 66_[+4]_6 chr12:108954863-10895494 2.3e-05 62_[+4]_10 chr1:100715304-100715384 2.3e-05 67_[+4]_5 chr6:42185545-42185625 2.3e-05 37_[+4]_35 chr14:91976586-91976666 2.3e-05 37_[+4]_35 chr6:30585682-30585762 3e-05 52_[+4]_20 chr8:131342295-131342375 3e-05 2_[+4]_70 chr12:31886829-31886909 4.4e-05 42_[+4]_30 chr12:125120969-12512104 4.4e-05 21_[+4]_51 chr3:194296057-194296137 4.4e-05 72_[+4] chr17:71225014-71225094 5.4e-05 21_[+4]_51 chr6:18585431-18585511 9.6e-05 18_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATYTT width=8 seqs=22 chr11:82868217-82868297 ( 14) GCCATTTT 1 chr11:77531722-77531802 ( 34) GCCATTTT 1 chr1:150336191-150336271 ( 3) GCCATTTT 1 chr5:170814446-170814526 ( 49) GCCATTTT 1 chr19:5978019-5978099 ( 70) GCCATTTT 1 chr6:135375858-135375938 ( 72) GCCATCTT 1 chr1:113161674-113161754 ( 57) GCCATCTT 1 chrX:122866803-122866883 ( 65) GCCATCTT 1 chr16:2827509-2827589 ( 68) GCCATCTT 1 chr7:99716931-99717011 ( 33) GCCATCTT 1 chr1:160232162-160232242 ( 67) GCCATCTT 1 chr12:108954863-10895494 ( 63) GCCATCTT 1 chr1:100715304-100715384 ( 68) GCCATCTT 1 chr6:42185545-42185625 ( 38) GCCATCTT 1 chr14:91976586-91976666 ( 38) GCCATCTT 1 chr6:30585682-30585762 ( 53) GACATTTT 1 chr8:131342295-131342375 ( 3) GACATTTT 1 chr12:31886829-31886909 ( 43) GCCAGTTT 1 chr12:125120969-12512104 ( 22) GCCAGTTT 1 chr3:194296057-194296137 ( 73) GCCAGTTT 1 chr17:71225014-71225094 ( 22) CCCATTTT 1 chr6:18585431-18585511 ( 19) CCCATCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 1.0e-005 -1110 -167 163 -1110 -120 165 -1110 -1110 -1110 179 -1110 -1110 226 -1110 -1110 -1110 -1110 -1110 -110 205 -1110 79 -1110 126 -1110 -1110 -1110 226 -1110 -1110 -1110 226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.0e-005 0.000000 0.090909 0.909091 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.136364 0.863636 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATYTT MEME-4 regular expression -------------------------------------------------------------------------------- GCCAT[CT]TT -------------------------------------------------------------------------------- Time 15.44 secs. ******************************************************************************** ******************************************************************************** MOTIF HNCAGCTG MEME-5 width = 8 sites = 51 llr = 400 E-value = 2.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif HNCAGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 42:7:::: pos.-specific C 43a::a:: probability G :3::a::a matrix T 32:3::a: bits 2.3 * 2.0 * 1.8 * **** 1.6 * **** Relative 1.4 ****** Entropy 1.1 ****** (11.3 bits) 0.9 ****** 0.7 ****** 0.5 * ****** 0.2 * ****** 0.0 -------- Multilevel AGCAGCTG consensus CC T sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HNCAGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:238632457-238632537 57 3.29e-05 gccttgtgtt agcagctg tgcataccaa chr22:33277120-33277200 40 3.29e-05 TGGGCCTCAG AGCAGCTG TTCCTCGGCA chr20:30287121-30287201 71 3.29e-05 CCTCCTGACC AGCAGCTG AG chr19:11494936-11495016 25 3.29e-05 CAGCTGGGTC AGCAGCTG CCTCCGCCGG chr17:1620859-1620939 59 3.29e-05 CTGGGGACGA ATCAGCTG TTACCACATC chr10:97277416-97277496 32 3.29e-05 atCACACCAG AGCAGCTG GGCAGGGAAG chr5:68596535-68596615 9 3.29e-05 ACATCTTT ATCAGCTG GAGTCCCTGG chr6:90995509-90995589 15 6.55e-05 TGAGTGCTAC AACAGCTG CATGAGTCAG chr12:51415576-51415656 53 6.55e-05 TGATAATGAA ACCAGCTG CCTGGGTGTC chr13:99133411-99133491 18 6.55e-05 GCAAGTGCTA AACAGCTG CACGAATTCG chr16:27558554-27558634 32 6.55e-05 tgctttaatt accagctg ctaggaatga chr16:4322990-4323070 49 6.55e-05 CAAGGCGGGA AACAGCTG GTGAAAACTC chr10:104421146-10442122 54 6.55e-05 GCAGCTGGGG AACAGCTG CAAGGCAGGA chr16:89043487-89043567 48 9.83e-05 GCCGGAGGCC TGCAGCTG CGCCCGCCAC chr12:116561462-11656154 36 9.83e-05 GAGTAATCCT TGCAGCTG TAACTGTTTG chrX:37731355-37731435 19 9.83e-05 catatctatg ttcagctg gtgagtcagc chr15:74902962-74903042 42 1.31e-04 CATCTCTACC TCCAGCTG GGCCCGAGAT chr8:1969895-1969975 48 1.31e-04 AGCACCCAGC TCCAGCTG TGCAGCCGGG chr7:44645986-44646066 53 1.31e-04 ACAGCTGGGC TCCAGCTG GCCCTGGCTT chr10:82500180-82500260 20 1.31e-04 GTTCCATCCC TCCAGCTG CGGTTTCGGG chr5:112420603-112420683 23 1.31e-04 TGTGACATTC TCCAGCTG GCTGATTAAT chr9:98196599-98196679 5 1.31e-04 TCAT TCCAGCTG CAGGGCTCAG chr8:131515546-131515626 56 1.31e-04 gagtcatgag tccagctg gagtcagctg chr2:178618697-178618777 43 1.31e-04 CATCCTCCTT TCCAGCTG ACAGTGAGAG chr7:154958537-154958617 44 1.76e-04 CTGGGCTGTG CGCAGCTG AGTTGAATCA chr20:2295861-2295941 14 1.76e-04 AGCCAATTTC CTCAGCTG CACCTCCCAG chrX:2595912-2595992 51 1.76e-04 tgagtcagtg ctcagctg ccgggtggcc chr1:247634595-247634675 69 1.76e-04 TCCACCATGA CGCAGCTG GAGA chr1:10460633-10460713 14 1.76e-04 CAGCTGTGCT CTCAGCTG CTACCACGAT chr14:62161948-62162028 46 1.76e-04 CCAGCTGTGC CTCAGCTG ACCGCCTCCT chr17:74102267-74102347 66 2.21e-04 agtaagtcaa cacagctg gccagca chrX:106985104-106985184 17 2.21e-04 GAGAGGCACA CACAGCTG GCAAGAGCCC chr6:7166770-7166850 54 2.21e-04 AAATTTTGAC CACAGCTG ACCACTTTTC chr8:131342295-131342375 24 2.21e-04 TACAGCTGGA CCCAGCTG GAAATGAATC chr19:46272699-46272779 53 2.21e-04 ACAGCTGGGC CACAGCTG GGCGGGGGCG chr15:89631208-89631288 18 2.21e-04 CCATAAGAGC CCCAGCTG AGCTACCAGC chr4:82646360-82646440 29 2.21e-04 CTGATGTCAG CCCAGCTG TGACAGCTGA chr1:100503686-100503766 41 2.54e-04 GGACGGCACT AGCTGCTG GGGCCTGCCG chr12:95397396-95397476 20 2.54e-04 GTGGCCGGTG ATCTGCTG CAGCCCGCGT chr6:30923410-30923490 48 2.54e-04 GGGCGCCGGA AGCTGCTG TCCCGGCGGA chr18:832331-832411 21 2.54e-04 TGGTGGTGTC AGCTGCTG CTTCAGAGAC chr17:71225014-71225094 3 2.54e-04 GC AGCTGCTG GTCCTCACAC chr22:35773040-35773120 41 3.20e-04 GCAGCTGCAT TTCTGCTG CGTCATGTTT chr22:38576164-38576244 69 3.20e-04 AGTGATGTCA TTCTGCTG AGTA chr11:71640089-71640169 54 3.20e-04 TTGGAGGTGG TGCTGCTG GGGAACGGGA chr8:93620178-93620258 21 3.52e-04 CGACACATTT TCCTGCTG TTGAGACCAG chr17:1225482-1225562 60 3.98e-04 tgcaaagtca cgctgctg tgctaaagca chr5:122847946-122848026 1 3.98e-04 . CGCTGCTG TGCATTCATT chr10:103578076-10357815 23 3.98e-04 CGTTCTCTGC CTCTGCTG CCCTCCCGAT chr6:52382486-52382566 63 4.43e-04 TGAGTCATCT CACTGCTG GGATGCATTT chr1:16490865-16490945 69 4.43e-04 ctaggctagt cactgctg tctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HNCAGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:238632457-238632537 3.3e-05 56_[+5]_16 chr22:33277120-33277200 3.3e-05 39_[+5]_33 chr20:30287121-30287201 3.3e-05 70_[+5]_2 chr19:11494936-11495016 3.3e-05 24_[+5]_48 chr17:1620859-1620939 3.3e-05 58_[+5]_14 chr10:97277416-97277496 3.3e-05 31_[+5]_41 chr5:68596535-68596615 3.3e-05 8_[+5]_64 chr6:90995509-90995589 6.5e-05 14_[+5]_58 chr12:51415576-51415656 6.5e-05 52_[+5]_20 chr13:99133411-99133491 6.5e-05 17_[+5]_55 chr16:27558554-27558634 6.5e-05 31_[+5]_41 chr16:4322990-4323070 6.5e-05 48_[+5]_24 chr10:104421146-10442122 6.5e-05 53_[+5]_19 chr16:89043487-89043567 9.8e-05 47_[+5]_25 chr12:116561462-11656154 9.8e-05 35_[+5]_37 chrX:37731355-37731435 9.8e-05 18_[+5]_54 chr15:74902962-74903042 0.00013 41_[+5]_31 chr8:1969895-1969975 0.00013 47_[+5]_25 chr7:44645986-44646066 0.00013 52_[+5]_20 chr10:82500180-82500260 0.00013 19_[+5]_53 chr5:112420603-112420683 0.00013 22_[+5]_50 chr9:98196599-98196679 0.00013 4_[+5]_68 chr8:131515546-131515626 0.00013 55_[+5]_17 chr2:178618697-178618777 0.00013 42_[+5]_30 chr7:154958537-154958617 0.00018 43_[+5]_29 chr20:2295861-2295941 0.00018 13_[+5]_59 chrX:2595912-2595992 0.00018 50_[+5]_22 chr1:247634595-247634675 0.00018 68_[+5]_4 chr1:10460633-10460713 0.00018 13_[+5]_59 chr14:62161948-62162028 0.00018 45_[+5]_27 chr17:74102267-74102347 0.00022 65_[+5]_7 chrX:106985104-106985184 0.00022 16_[+5]_56 chr6:7166770-7166850 0.00022 53_[+5]_19 chr8:131342295-131342375 0.00022 23_[+5]_49 chr19:46272699-46272779 0.00022 52_[+5]_20 chr15:89631208-89631288 0.00022 17_[+5]_55 chr4:82646360-82646440 0.00022 28_[+5]_44 chr1:100503686-100503766 0.00025 40_[+5]_32 chr12:95397396-95397476 0.00025 19_[+5]_53 chr6:30923410-30923490 0.00025 47_[+5]_25 chr18:832331-832411 0.00025 20_[+5]_52 chr17:71225014-71225094 0.00025 2_[+5]_70 chr22:35773040-35773120 0.00032 40_[+5]_32 chr22:38576164-38576244 0.00032 68_[+5]_4 chr11:71640089-71640169 0.00032 53_[+5]_19 chr8:93620178-93620258 0.00035 20_[+5]_52 chr17:1225482-1225562 0.0004 59_[+5]_13 chr5:122847946-122848026 0.0004 [+5]_72 chr10:103578076-10357815 0.0004 22_[+5]_50 chr6:52382486-52382566 0.00044 62_[+5]_10 chr1:16490865-16490945 0.00044 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HNCAGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HNCAGCTG width=8 seqs=51 chr2:238632457-238632537 ( 57) AGCAGCTG 1 chr22:33277120-33277200 ( 40) AGCAGCTG 1 chr20:30287121-30287201 ( 71) AGCAGCTG 1 chr19:11494936-11495016 ( 25) AGCAGCTG 1 chr17:1620859-1620939 ( 59) ATCAGCTG 1 chr10:97277416-97277496 ( 32) AGCAGCTG 1 chr5:68596535-68596615 ( 9) ATCAGCTG 1 chr6:90995509-90995589 ( 15) AACAGCTG 1 chr12:51415576-51415656 ( 53) ACCAGCTG 1 chr13:99133411-99133491 ( 18) AACAGCTG 1 chr16:27558554-27558634 ( 32) ACCAGCTG 1 chr16:4322990-4323070 ( 49) AACAGCTG 1 chr10:104421146-10442122 ( 54) AACAGCTG 1 chr16:89043487-89043567 ( 48) TGCAGCTG 1 chr12:116561462-11656154 ( 36) TGCAGCTG 1 chrX:37731355-37731435 ( 19) TTCAGCTG 1 chr15:74902962-74903042 ( 42) TCCAGCTG 1 chr8:1969895-1969975 ( 48) TCCAGCTG 1 chr7:44645986-44646066 ( 53) TCCAGCTG 1 chr10:82500180-82500260 ( 20) TCCAGCTG 1 chr5:112420603-112420683 ( 23) TCCAGCTG 1 chr9:98196599-98196679 ( 5) TCCAGCTG 1 chr8:131515546-131515626 ( 56) TCCAGCTG 1 chr2:178618697-178618777 ( 43) TCCAGCTG 1 chr7:154958537-154958617 ( 44) CGCAGCTG 1 chr20:2295861-2295941 ( 14) CTCAGCTG 1 chrX:2595912-2595992 ( 51) CTCAGCTG 1 chr1:247634595-247634675 ( 69) CGCAGCTG 1 chr1:10460633-10460713 ( 14) CTCAGCTG 1 chr14:62161948-62162028 ( 46) CTCAGCTG 1 chr17:74102267-74102347 ( 66) CACAGCTG 1 chrX:106985104-106985184 ( 17) CACAGCTG 1 chr6:7166770-7166850 ( 54) CACAGCTG 1 chr8:131342295-131342375 ( 24) CCCAGCTG 1 chr19:46272699-46272779 ( 53) CACAGCTG 1 chr15:89631208-89631288 ( 18) CCCAGCTG 1 chr4:82646360-82646440 ( 29) CCCAGCTG 1 chr1:100503686-100503766 ( 41) AGCTGCTG 1 chr12:95397396-95397476 ( 20) ATCTGCTG 1 chr6:30923410-30923490 ( 48) AGCTGCTG 1 chr18:832331-832411 ( 21) AGCTGCTG 1 chr17:71225014-71225094 ( 3) AGCTGCTG 1 chr22:35773040-35773120 ( 41) TTCTGCTG 1 chr22:38576164-38576244 ( 69) TTCTGCTG 1 chr11:71640089-71640169 ( 54) TGCTGCTG 1 chr8:93620178-93620258 ( 21) TCCTGCTG 1 chr17:1225482-1225562 ( 60) CGCTGCTG 1 chr5:122847946-122848026 ( 1) CGCTGCTG 1 chr10:103578076-10357815 ( 23) CTCTGCTG 1 chr6:52382486-52382566 ( 63) CACTGCTG 1 chr1:16490865-16490945 ( 69) CACTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HNCAGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.63023 E= 2.9e-008 76 29 -1232 49 -9 -8 10 4 -1232 179 -1232 -1232 180 -1232 -1232 39 -1232 -1232 177 -1232 -1232 179 -1232 -1232 -1232 -1232 -1232 226 -1232 -1232 177 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HNCAGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 2.9e-008 0.352941 0.352941 0.000000 0.294118 0.196078 0.274510 0.313725 0.215686 0.000000 1.000000 0.000000 0.000000 0.725490 0.000000 0.000000 0.274510 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HNCAGCTG MEME-5 regular expression -------------------------------------------------------------------------------- [ACT][GCT]C[AT]GCTG -------------------------------------------------------------------------------- Time 18.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:37731355-37731435 2.25e-04 20_[+1(6.57e-05)]_4_[+1(6.57e-05)]_\ 40 chr4:82646360-82646440 1.36e-04 39_[+1(4.65e-05)]_25_[+2(6.07e-05)] chr5:68596535-68596615 8.45e-03 8_[+5(3.29e-05)]_64 chr10:105127689-10512776 1.15e-02 54_[+3(1.39e-05)]_18 chr15:82439435-82439515 1.23e-03 38_[+1(1.37e-05)]_34 chr10:97277416-97277496 3.92e-05 17_[+2(8.14e-05)]_6_[+5(3.29e-05)]_\ 41 chr2:54308933-54309013 2.80e-01 80 chr7:66691402-66691482 1.50e-05 8_[+5(3.29e-05)]_55_[+2(6.07e-05)]_\ 1 chr13:111607679-11160775 1.30e-01 50_[+2(6.07e-05)]_22 chr17:1620859-1620939 2.45e-04 22_[+1(1.37e-05)]_30_[+1(2.74e-05)]_\ 12 chr3:194296057-194296137 1.63e-05 33_[+2(3.33e-05)]_31_[+4(4.40e-05)] chr19:11494936-11495016 8.33e-04 24_[+5(3.29e-05)]_48 chr7:25894898-25894978 4.35e-02 80 chr15:89631208-89631288 7.23e-04 19_[+1(4.65e-05)]_5_[+5(3.29e-05)]_\ 40 chr10:134956862-13495694 2.13e-03 54_[+1(4.65e-05)]_18 chr17:71225014-71225094 2.88e-06 21_[+4(5.36e-05)]_11_[+5(6.55e-05)]_\ 16_[+2(3.33e-05)]_8 chr2:178618697-178618777 7.27e-04 12_[+1(4.65e-05)]_60 chr8:131515546-131515626 4.83e-05 8_[+2(3.33e-05)]_27_[+2(3.33e-05)]_\ 16_[+1(6.57e-05)]_5 chr14:62161948-62162028 3.33e-03 80 chr21:30672632-30672712 3.56e-06 5_[+2(3.33e-05)]_27_[+5(6.55e-05)]_\ 32 chr2:10638120-10638200 4.07e-02 [+2(9.89e-06)]_72 chr2:156087830-156087910 8.84e-02 5_[+3(1.39e-05)]_67 chr3:196170977-196171057 7.21e-06 20_[+4(4.40e-05)]_17_[+1(1.37e-05)]_\ 27 chr6:161695234-161695314 6.44e-03 2_[+2(9.89e-06)]_70 chr12:125120969-12512104 2.53e-04 21_[+4(4.40e-05)]_51 chr11:62341196-62341276 2.62e-01 56_[+3(5.69e-05)]_16 chr10:104421146-10442122 6.37e-03 53_[+5(6.55e-05)]_19 chr19:5978019-5978099 2.96e-02 69_[+4(9.76e-06)]_3 chr1:39864510-39864590 3.44e-03 56_[+5(6.55e-05)]_16 chr18:55487401-55487481 4.15e-03 69_[+5(3.29e-05)]_3 chr1:2121162-2121242 2.63e-03 80 chr14:61201467-61201547 3.77e-01 80 chr16:4322990-4323070 8.64e-04 17_[+1(1.37e-05)]_23_[+5(6.55e-05)]_\ 24 chr19:46272699-46272779 6.33e-03 80 chr9:98196599-98196679 2.52e-03 80 chr11:118661981-11866206 6.51e-01 80 chr11:6589846-6589926 1.42e-04 20_[+2(6.07e-05)]_25_[+2(6.07e-05)]_\ 19 chr14:58637939-58638019 4.14e-04 15_[+5(6.55e-05)]_10_[+2(3.33e-05)]_\ 13_[+2(3.33e-05)]_18 chr8:131342295-131342375 9.33e-06 2_[+4(3.03e-05)]_24_[+2(8.14e-05)]_\ 38 chr1:16490865-16490945 4.54e-03 80 chr3:128523163-128523243 1.07e-02 40_[+5(6.55e-05)]_32 chr4:2010608-2010688 6.96e-02 80 chr12:116561462-11656154 4.51e-04 23_[+2(9.84e-05)]_4_[+5(9.83e-05)]_\ 13_[+5(9.83e-05)]_16 chr6:7166770-7166850 4.02e-03 80 chr1:161129293-161129373 6.28e-03 17_[+3(1.39e-05)]_55 chr1:10460633-10460713 3.54e-04 33_[+1(2.74e-05)]_39 chr15:79471529-79471609 5.84e-05 42_[+2(3.33e-05)]_30 chr19:34850474-34850554 3.19e-05 20_[+2(3.33e-05)]_31_[+5(6.55e-05)]_\ 13 chr16:29302348-29302428 1.16e-02 4_[+5(3.29e-05)]_68 chr1:154404194-154404274 1.46e-05 21_[+1(2.74e-05)]_51 chrX:106985104-106985184 1.28e-03 39_[+1(2.74e-05)]_33 chr5:112420603-112420683 2.90e-04 60_[+1(4.65e-05)]_12 chr7:7139376-7139456 3.54e-03 42_[+1(1.37e-05)]_30 chr2:234335409-234335489 2.79e-05 1_[+2(3.33e-05)]_17_[+1(2.74e-05)]_\ 46 chr19:47289559-47289639 2.59e-03 37_[+1(2.74e-05)]_35 chr2:15870731-15870811 2.56e-04 8_[+2(6.07e-05)]_64 chr3:45709658-45709738 6.91e-02 80 chr3:81792675-81792755 1.79e-05 23_[+2(9.89e-06)]_40_[+1(2.74e-05)]_\ 1 chr16:27558554-27558634 3.80e-05 31_[+5(6.55e-05)]_6_[+2(3.33e-05)]_\ 27 chr15:72529820-72529900 2.46e-03 70_[+2(3.33e-05)]_2 chr16:11350263-11350343 9.79e-01 80 chrX:102470039-102470119 8.21e-01 80 chr20:30287121-30287201 3.60e-05 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chr5:172882403-172882483 1.22e-02 80 chr7:56174131-56174211 2.28e-01 80 chr1:161172164-161172244 1.01e-02 8_[+3(1.39e-05)]_64 chr12:27175494-27175574 8.83e-03 15_[+3(3.74e-05)]_57 chr6:30585682-30585762 3.93e-02 52_[+4(3.03e-05)]_20 chr15:74902962-74903042 1.92e-02 80 chr12:53400285-53400365 2.75e-01 80 chr2:73596060-73596140 5.86e-04 80 chr6:80254793-80254873 4.76e-04 68_[+2(6.07e-05)]_4 chrX:21857723-21857803 1.57e-02 62_[+1(2.74e-05)]_10 chr1:113161674-113161754 2.19e-04 22_[+5(6.55e-05)]_26_[+4(2.33e-05)]_\ 16 chr6:135375858-135375938 1.93e-02 71_[+4(2.33e-05)]_1 chr6:79788197-79788277 9.55e-01 80 chr5:132362139-132362219 9.60e-01 80 chr1:25756831-25756911 9.37e-01 80 chr1:100503686-100503766 2.61e-01 80 chr7:91570229-91570309 2.61e-01 80 chr12:52278544-52278624 1.18e-03 19_[+2(6.07e-05)]_20_[+2(3.33e-05)]_\ 25 chr3:151348981-151349061 4.81e-03 46_[+5(6.55e-05)]_26 chr19:41945672-41945752 2.28e-01 80 chr7:154958537-154958617 9.41e-04 4_[+1(4.65e-05)]_33_[+1(4.65e-05)]_\ 27 chr8:21917544-21917624 1.42e-02 59_[+1(4.65e-05)]_13 chr5:37668812-37668892 5.01e-04 12_[+1(6.57e-05)]_60 chr22:36925091-36925171 4.62e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************