******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:156087853-156087933 1.0000 80 chr6:89130815-89130895 1.0000 80 chr10:105127710-10512779 1.0000 80 chr17:53654040-53654120 1.0000 80 chr1:29676517-29676597 1.0000 80 chrX:102470061-102470141 1.0000 80 chr9:103289630-103289710 1.0000 80 chr7:25894924-25895004 1.0000 80 chr2:175412140-175412220 1.0000 80 chr2:67624503-67624583 1.0000 80 chr3:15228229-15228309 1.0000 80 chr6:161695264-161695344 1.0000 80 chr6:28722499-28722579 1.0000 80 chr15:26874100-26874180 1.0000 80 chrX:1021025-1021105 1.0000 80 chr12:108954809-10895488 1.0000 80 chr12:104229629-10422970 1.0000 80 chr11:62341185-62341265 1.0000 80 chr14:91976541-91976621 1.0000 80 chr7:105516781-105516861 1.0000 80 chr12:129594221-12959430 1.0000 80 chr3:180630522-180630602 1.0000 80 chr11:118662007-11866208 1.0000 80 chrX:48980330-48980410 1.0000 80 chr7:156194999-156195079 1.0000 80 chr4:2010584-2010664 1.0000 80 chr11:71640162-71640242 1.0000 80 chr5:170921653-170921733 1.0000 80 chr17:45569709-45569789 1.0000 80 chr12:27175551-27175631 1.0000 80 chr14:61201492-61201572 1.0000 80 chr15:37392505-37392585 1.0000 80 chr1:197964793-197964873 1.0000 80 chr7:134617896-134617976 1.0000 80 chr16:75467929-75468009 1.0000 80 chrX:71496938-71497018 1.0000 80 chr9:32552341-32552421 1.0000 80 chr4:85220153-85220233 1.0000 80 chr21:20132254-20132334 1.0000 80 chr5:40798155-40798235 1.0000 80 chr6:31790041-31790121 1.0000 80 chr20:30945677-30945757 1.0000 80 chr4:83956462-83956542 1.0000 80 chr12:113623600-11362368 1.0000 80 chr16:15982319-15982399 1.0000 80 chr7:53879467-53879547 1.0000 80 chr11:107328380-10732846 1.0000 80 chr16:15667909-15667989 1.0000 80 chr18:3603733-3603813 1.0000 80 chr13:99852778-99852858 1.0000 80 chr7:77325854-77325934 1.0000 80 chr15:51329749-51329829 1.0000 80 chr18:53184438-53184518 1.0000 80 chr1:113161635-113161715 1.0000 80 chr6:133469081-133469161 1.0000 80 chr7:39053001-39053081 1.0000 80 chr14:23564203-23564283 1.0000 80 chr7:39988960-39989040 1.0000 80 chr8:74205695-74205775 1.0000 80 chr3:120461210-120461290 1.0000 80 chr11:34938293-34938373 1.0000 80 chr17:8286371-8286451 1.0000 80 chr7:86669336-86669416 1.0000 80 chr9:131873287-131873367 1.0000 80 chrX:71459087-71459167 1.0000 80 chr1:67895949-67896029 1.0000 80 chr5:137514188-137514268 1.0000 80 chrX:118925436-118925516 1.0000 80 chr1:100715282-100715362 1.0000 80 chr8:27132124-27132204 1.0000 80 chr12:21572292-21572372 1.0000 80 chrX:48858536-48858616 1.0000 80 chr7:22862350-22862430 1.0000 80 chr2:152561283-152561363 1.0000 80 chr4:76439345-76439425 1.0000 80 chr14:92588375-92588455 1.0000 80 chr2:76099427-76099507 1.0000 80 chr2:217363633-217363713 1.0000 80 chr12:80328622-80328702 1.0000 80 chr21:47744213-47744293 1.0000 80 chr2:232571998-232572078 1.0000 80 chr1:249132703-249132783 1.0000 80 chr22:36925047-36925127 1.0000 80 chr1:245509046-245509126 1.0000 80 chr1:87379673-87379753 1.0000 80 chr8:103876290-103876370 1.0000 80 chr5:103415740-103415820 1.0000 80 chr2:180871686-180871766 1.0000 80 chr22:30163429-30163509 1.0000 80 chr19:56135852-56135932 1.0000 80 chr1:150337265-150337345 1.0000 80 chr10:103578089-10357816 1.0000 80 chr1:150336222-150336302 1.0000 80 chr19:49999730-49999810 1.0000 80 chr2:70121080-70121160 1.0000 80 chr3:6382693-6382773 1.0000 80 chr9:132350163-132350243 1.0000 80 chrX:123094535-123094615 1.0000 80 chr6:30923365-30923445 1.0000 80 chr4:88311299-88311379 1.0000 80 chr12:12420304-12420384 1.0000 80 chr3:17902586-17902666 1.0000 80 chr14:23398421-23398501 1.0000 80 chr12:7000097-7000177 1.0000 80 chr14:21737484-21737564 1.0000 80 chr19:14887553-14887633 1.0000 80 chr1:16971388-16971468 1.0000 80 chr22:42475836-42475916 1.0000 80 chr2:242254889-242254969 1.0000 80 chr7:134896150-134896230 1.0000 80 chr8:20054936-20055016 1.0000 80 chr19:14063353-14063433 1.0000 80 chr1:62901790-62901870 1.0000 80 chr15:72529782-72529862 1.0000 80 chr1:155197645-155197725 1.0000 80 chr12:111180971-11118105 1.0000 80 chr3:187608315-187608395 1.0000 80 chr1:59165594-59165674 1.0000 80 chr11:76155591-76155671 1.0000 80 chr3:178577842-178577922 1.0000 80 chr6:42713700-42713780 1.0000 80 chr1:244615051-244615131 1.0000 80 chr22:41347405-41347485 1.0000 80 chr6:33239354-33239434 1.0000 80 chr3:170602141-170602221 1.0000 80 chr2:27851930-27852010 1.0000 80 chr20:44601326-44601406 1.0000 80 chr14:31494867-31494947 1.0000 80 chr9:108545142-108545222 1.0000 80 chr1:161129307-161129387 1.0000 80 chr7:64466916-64466996 1.0000 80 chr2:69664399-69664479 1.0000 80 chr3:169684616-169684696 1.0000 80 chr7:102678539-102678619 1.0000 80 chr7:10979645-10979725 1.0000 80 chr6:40132124-40132204 1.0000 80 chr10:11936614-11936694 1.0000 80 chr17:11900994-11901074 1.0000 80 chr22:32149633-32149713 1.0000 80 chr1:231473487-231473567 1.0000 80 chr2:175352201-175352281 1.0000 80 chr19:46917028-46917108 1.0000 80 chr6:34393706-34393786 1.0000 80 chr15:66874521-66874601 1.0000 80 chr7:150019275-150019355 1.0000 80 chr21:47442724-47442804 1.0000 80 chr3:40341586-40341666 1.0000 80 chr6:135819429-135819509 1.0000 80 chr19:52693375-52693455 1.0000 80 chr17:4699547-4699627 1.0000 80 chr19:38865441-38865521 1.0000 80 chr9:135545648-135545728 1.0000 80 chr19:5622662-5622742 1.0000 80 chr7:93220726-93220806 1.0000 80 chr9:128004079-128004159 1.0000 80 chr20:49574973-49575053 1.0000 80 chr3:197518158-197518238 1.0000 80 chr1:100503770-100503850 1.0000 80 chr1:113162549-113162629 1.0000 80 chr2:8822195-8822275 1.0000 80 chr4:140216823-140216903 1.0000 80 chr5:137089925-137090005 1.0000 80 chr7:123168030-123168110 1.0000 80 chr17:37607408-37607488 1.0000 80 chrX:74376027-74376107 1.0000 80 chr12:53689432-53689512 1.0000 80 chr12:133707267-13370734 1.0000 80 chr16:31724641-31724721 1.0000 80 chr7:152160596-152160676 1.0000 80 chr22:19842176-19842256 1.0000 80 chr16:70557265-70557345 1.0000 80 chr7:64498806-64498886 1.0000 80 chr1:196987059-196987139 1.0000 80 chr2:135809951-135810031 1.0000 80 chr1:38478507-38478587 1.0000 80 chr18:47018727-47018807 1.0000 80 chr12:77158146-77158226 1.0000 80 chr1:226496689-226496769 1.0000 80 chr6:126307698-126307778 1.0000 80 chr18:6683488-6683568 1.0000 80 chr4:80132832-80132912 1.0000 80 chr7:102212864-102212944 1.0000 80 chr17:73257987-73258067 1.0000 80 chr8:67974263-67974343 1.0000 80 chr19:11925139-11925219 1.0000 80 chr20:34330605-34330685 1.0000 80 chr12:95397351-95397431 1.0000 80 chr2:114647233-114647313 1.0000 80 chr5:52856505-52856585 1.0000 80 chr5:170814360-170814440 1.0000 80 chr11:3402226-3402306 1.0000 80 chr16:70557794-70557874 1.0000 80 chr19:23869790-23869870 1.0000 80 chr10:5488583-5488663 1.0000 80 chr6:99841913-99841993 1.0000 80 chr4:174255356-174255436 1.0000 80 chr17:40169318-40169398 1.0000 80 chrX:100646066-100646146 1.0000 80 chr5:180670768-180670848 1.0000 80 chr6:157008287-157008367 1.0000 80 chr3:197677150-197677230 1.0000 80 chr6:31588625-31588705 1.0000 80 chr19:2476133-2476213 1.0000 80 chr1:16162715-16162795 1.0000 80 chr17:7487228-7487308 1.0000 80 chr1:36626693-36626773 1.0000 80 chr15:41624611-41624691 1.0000 80 chr10:116698037-11669811 1.0000 80 chr10:101190283-10119036 1.0000 80 chr10:74451851-74451931 1.0000 80 chr14:58764670-58764750 1.0000 80 chr2:88927467-88927547 1.0000 80 chr16:14014085-14014165 1.0000 80 chr8:77767921-77768001 1.0000 80 chr12:54719021-54719101 1.0000 80 chr12:123011347-12301142 1.0000 80 chr7:139677017-139677097 1.0000 80 chr5:114598452-114598532 1.0000 80 chr7:145481778-145481858 1.0000 80 chr1:16212696-16212776 1.0000 80 chr16:2827515-2827595 1.0000 80 chr7:42972004-42972084 1.0000 80 chr12:54867514-54867594 1.0000 80 chr1:18748602-18748682 1.0000 80 chr11:77531662-77531742 1.0000 80 chr22:42486639-42486719 1.0000 80 chrX:123095212-123095292 1.0000 80 chr18:1521913-1521993 1.0000 80 chr2:176569431-176569511 1.0000 80 chr17:28443879-28443959 1.0000 80 chr12:54069678-54069758 1.0000 80 chrX:122866774-122866854 1.0000 80 chr16:31470887-31470967 1.0000 80 chr3:53916050-53916130 1.0000 80 chr19:16222753-16222833 1.0000 80 chr1:222791469-222791549 1.0000 80 chr6:134343863-134343943 1.0000 80 chr20:33543429-33543509 1.0000 80 chr20:44563391-44563471 1.0000 80 chr16:67867659-67867739 1.0000 80 chr5:62048487-62048567 1.0000 80 chr14:65381236-65381316 1.0000 80 chr7:99716902-99716982 1.0000 80 chr2:208890192-208890272 1.0000 80 chr8:97247629-97247709 1.0000 80 chr1:61105891-61105971 1.0000 80 chr17:62502313-62502393 1.0000 80 chrX:77041557-77041637 1.0000 80 chr12:32908712-32908792 1.0000 80 chr12:120966857-12096693 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TAF7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.207 C 0.297 G 0.297 T 0.199 Background letter frequencies (from file dataset with add-one prior applied): A 0.207 C 0.297 G 0.297 T 0.199 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RAAGAAAA MEME-1 width = 8 sites = 33 llr = 268 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAGAAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 57a1a897 pos.-specific C :1:2:::: probability G 52:7:213 matrix T 1::::::: bits 2.3 * * 2.1 * * 1.9 * * * 1.6 * * * Relative 1.4 * **** Entropy 1.2 * **** (11.7 bits) 0.9 ** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAGAAAA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAGAAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:5488583-5488663 55 1.18e-05 CGAGCTCTGG GAAGAAAA GCCCGTGTGC chr8:103876290-103876370 56 1.18e-05 GGCGACGGCA GAAGAAAA AAGGAAAAAC chr7:134617896-134617976 72 1.18e-05 TACCGAGAAG GAAGAAAA A chr12:104229629-10422970 12 1.18e-05 ttgagactgg gaagaaaa aagatgttta chr1:61105891-61105971 30 1.87e-05 tttccgagtc aaagaaag gggtgacgga chr3:6382693-6382773 51 1.87e-05 attcctagtc aaagaaag gggtgacgga chr4:83956462-83956542 29 1.87e-05 AGAGGTGGGG AAAGAAAG CCACAGCCTT chr4:85220153-85220233 15 1.87e-05 tttccaagtc aaagaaag gggtgacgga chr6:134343863-134343943 56 2.69e-05 gtcaaaacac aaacaaaa tggagtcagg chr6:135819429-135819509 43 2.69e-05 GTGAAAAACA AAACAAAA GTTAAAACGC chr6:28722499-28722579 63 3.69e-05 catgacagca gaagaaag aagtatgagc chr8:97247629-97247709 32 4.87e-05 TACAAAGAAG AGAGAAAA CGGAGCAAGC chr12:95397351-95397431 22 4.87e-05 CCGCCTACCT GAAAAAAA CCCGTAGATA chr8:74205695-74205775 64 4.87e-05 ACGGCCAGAG AGAGAAAA AGTGACACA chr1:197964793-197964873 4 6.25e-05 ctg gaacaaaa gaggtttagt chrX:1021025-1021105 73 6.25e-05 ccagcgcaga gaacaaaa chr11:118662007-11866208 60 7.71e-05 AGCTTCCTGA GGAGAAAA TGGAGGGCCC chr17:37607408-37607488 61 8.71e-05 CCGGCGGCAA GAAGAGAA GGGTGCTCGA chr21:20132254-20132334 27 8.71e-05 gtgggtcacg gaagagaa ccgtggaacc chr7:25894924-25895004 39 8.71e-05 GTGGCAGCTG GAAGAGAA GGAATCGGAC chr22:32149633-32149713 13 9.40e-05 CGTTCATATA ACAGAAAA CGGAGCTCTG chr5:170921653-170921733 3 9.40e-05 AC ACAGAAAA CAACCACATT chr12:123011347-12301142 5 1.09e-04 CGTA GCAGAAAA ATATCCCTGG chr1:196987059-196987139 12 1.40e-04 acttcctatc agagaaag tccaaacagc chrX:123094535-123094615 55 1.40e-04 TCGAGGGTGT AAAGAAGA GGAAGGGGAA chr2:67624503-67624583 42 1.40e-04 GCAAAATGTG AAAGAAGA AGCGGCTGGT chr12:54719021-54719101 26 1.64e-04 GGAGACGGGG AAAGAGAG TTCCGGGTAA chr11:76155591-76155671 36 1.64e-04 GGCACTTCAG GAACAAAG CTGCTCTCCC chr1:113162549-113162629 48 1.76e-04 TGTCCCCAGG AAAAAGAA GCTTCTTGGT chr16:75467929-75468009 7 2.14e-04 ccttac ggagaaag tccgcgtgtt chr16:70557794-70557874 39 2.38e-04 CGCTGCAGGG TAAAAAAA CAGCCTGGAG chr6:161695264-161695344 73 2.38e-04 GCTGCCAGGA TAAAAAAA chr7:10979645-10979725 68 3.18e-04 CGACTGGAAA GGAGAGAA CCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAGAAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:5488583-5488663 1.2e-05 54_[+1]_18 chr8:103876290-103876370 1.2e-05 55_[+1]_17 chr7:134617896-134617976 1.2e-05 71_[+1]_1 chr12:104229629-10422970 1.2e-05 11_[+1]_61 chr1:61105891-61105971 1.9e-05 29_[+1]_43 chr3:6382693-6382773 1.9e-05 50_[+1]_22 chr4:83956462-83956542 1.9e-05 28_[+1]_44 chr4:85220153-85220233 1.9e-05 14_[+1]_58 chr6:134343863-134343943 2.7e-05 55_[+1]_17 chr6:135819429-135819509 2.7e-05 42_[+1]_30 chr6:28722499-28722579 3.7e-05 62_[+1]_10 chr8:97247629-97247709 4.9e-05 31_[+1]_41 chr12:95397351-95397431 4.9e-05 21_[+1]_51 chr8:74205695-74205775 4.9e-05 63_[+1]_9 chr1:197964793-197964873 6.3e-05 3_[+1]_69 chrX:1021025-1021105 6.3e-05 72_[+1] chr11:118662007-11866208 7.7e-05 59_[+1]_13 chr17:37607408-37607488 8.7e-05 60_[+1]_12 chr21:20132254-20132334 8.7e-05 26_[+1]_46 chr7:25894924-25895004 8.7e-05 38_[+1]_34 chr22:32149633-32149713 9.4e-05 12_[+1]_60 chr5:170921653-170921733 9.4e-05 2_[+1]_70 chr12:123011347-12301142 0.00011 4_[+1]_68 chr1:196987059-196987139 0.00014 11_[+1]_61 chrX:123094535-123094615 0.00014 54_[+1]_18 chr2:67624503-67624583 0.00014 41_[+1]_31 chr12:54719021-54719101 0.00016 25_[+1]_47 chr11:76155591-76155671 0.00016 35_[+1]_37 chr1:113162549-113162629 0.00018 47_[+1]_25 chr16:75467929-75468009 0.00021 6_[+1]_66 chr16:70557794-70557874 0.00024 38_[+1]_34 chr6:161695264-161695344 0.00024 72_[+1] chr7:10979645-10979725 0.00032 67_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAGAAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAGAAAA width=8 seqs=33 chr10:5488583-5488663 ( 55) GAAGAAAA 1 chr8:103876290-103876370 ( 56) GAAGAAAA 1 chr7:134617896-134617976 ( 72) GAAGAAAA 1 chr12:104229629-10422970 ( 12) GAAGAAAA 1 chr1:61105891-61105971 ( 30) AAAGAAAG 1 chr3:6382693-6382773 ( 51) AAAGAAAG 1 chr4:83956462-83956542 ( 29) AAAGAAAG 1 chr4:85220153-85220233 ( 15) AAAGAAAG 1 chr6:134343863-134343943 ( 56) AAACAAAA 1 chr6:135819429-135819509 ( 43) AAACAAAA 1 chr6:28722499-28722579 ( 63) GAAGAAAG 1 chr8:97247629-97247709 ( 32) AGAGAAAA 1 chr12:95397351-95397431 ( 22) GAAAAAAA 1 chr8:74205695-74205775 ( 64) AGAGAAAA 1 chr1:197964793-197964873 ( 4) GAACAAAA 1 chrX:1021025-1021105 ( 73) GAACAAAA 1 chr11:118662007-11866208 ( 60) GGAGAAAA 1 chr17:37607408-37607488 ( 61) GAAGAGAA 1 chr21:20132254-20132334 ( 27) GAAGAGAA 1 chr7:25894924-25895004 ( 39) GAAGAGAA 1 chr22:32149633-32149713 ( 13) ACAGAAAA 1 chr5:170921653-170921733 ( 3) ACAGAAAA 1 chr12:123011347-12301142 ( 5) GCAGAAAA 1 chr1:196987059-196987139 ( 12) AGAGAAAG 1 chrX:123094535-123094615 ( 55) AAAGAAGA 1 chr2:67624503-67624583 ( 42) AAAGAAGA 1 chr12:54719021-54719101 ( 26) AAAGAGAG 1 chr11:76155591-76155671 ( 36) GAACAAAG 1 chr1:113162549-113162629 ( 48) AAAAAGAA 1 chr16:75467929-75468009 ( 7) GGAGAAAG 1 chr16:70557794-70557874 ( 39) TAAAAAAA 1 chr6:161695264-161695344 ( 73) TAAAAAAA 1 chr7:10979645-10979725 ( 68) GGAGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAGAAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 1.5e+003 113 -1169 71 -172 181 -171 -71 -1169 227 -1169 -1169 -1169 -77 -97 129 -1169 227 -1169 -1169 -1169 198 -1169 -71 -1169 218 -1169 -229 -1169 181 -1169 -12 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAGAAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.5e+003 0.454545 0.000000 0.484848 0.060606 0.727273 0.090909 0.181818 0.000000 1.000000 0.000000 0.000000 0.000000 0.121212 0.151515 0.727273 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.939394 0.000000 0.060606 0.000000 0.727273 0.000000 0.272727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAGAAAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]AAGAAA[AG] -------------------------------------------------------------------------------- Time 4.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTAA MEME-2 width = 8 sites = 3 llr = 38 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C :::::::: probability G :::::::: matrix T aaaaaa:: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:1521913-1521993 12 2.66e-06 tggtgggctg ttttttaa gcctgtcgga chr7:123168030-123168110 49 2.66e-06 tggtccgccg ttttttaa gcctgtcgga chr5:103415740-103415820 29 2.66e-06 tggtgcgccg ttttttaa gcccgtcgga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:1521913-1521993 2.7e-06 11_[+2]_61 chr7:123168030-123168110 2.7e-06 48_[+2]_24 chr5:103415740-103415820 2.7e-06 28_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTAA width=8 seqs=3 chr18:1521913-1521993 ( 12) TTTTTTAA 1 chr7:123168030-123168110 ( 49) TTTTTTAA 1 chr5:103415740-103415820 ( 29) TTTTTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 1.7e+003 -823 -823 -823 232 -823 -823 -823 232 -823 -823 -823 232 -823 -823 -823 232 -823 -823 -823 232 -823 -823 -823 232 227 -823 -823 -823 227 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTAA MEME-2 regular expression -------------------------------------------------------------------------------- TTTTTTAA -------------------------------------------------------------------------------- Time 8.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TATAATCT MEME-3 width = 8 sites = 4 llr = 50 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATAATCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:aa::: pos.-specific C ::::::a: probability G :::::::: matrix T a:a::a:a bits 2.3 ****** * 2.1 ****** * 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATAATCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAATCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:123168030-123168110 29 4.13e-06 gggtggggga tataatct cctggtccgc chr7:93220726-93220806 20 4.13e-06 aggtgtggga tataatct cgtggtgcgc chr4:88311299-88311379 4 4.13e-06 GAG TATAATCt ttttgtttgt chr5:103415740-103415820 9 4.13e-06 gtgtggga tataatct cgtggtgcgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAATCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:123168030-123168110 4.1e-06 28_[+3]_44 chr7:93220726-93220806 4.1e-06 19_[+3]_53 chr4:88311299-88311379 4.1e-06 3_[+3]_69 chr5:103415740-103415820 4.1e-06 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAATCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATAATCT width=8 seqs=4 chr7:123168030-123168110 ( 29) TATAATCT 1 chr7:93220726-93220806 ( 20) TATAATCT 1 chr4:88311299-88311379 ( 4) TATAATCT 1 chr5:103415740-103415820 ( 9) TATAATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAATCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 2.5e+003 -865 -865 -865 232 227 -865 -865 -865 -865 -865 -865 232 227 -865 -865 -865 227 -865 -865 -865 -865 -865 -865 232 -865 175 -865 -865 -865 -865 -865 232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAATCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.5e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAATCT MEME-3 regular expression -------------------------------------------------------------------------------- TATAATCT -------------------------------------------------------------------------------- Time 12.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CCYTTTCY MEME-4 width = 8 sites = 32 llr = 265 E-value = 5.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCYTTTCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:1::::: pos.-specific C 676:::a5 probability G 2::::::: matrix T :33aaa:5 bits 2.3 *** 2.1 *** 1.9 **** 1.6 **** Relative 1.4 **** Entropy 1.2 **** (12.0 bits) 0.9 * ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCTTTCC consensus ATT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYTTTCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:21572292-21572372 72 1.22e-05 tcagcgagtt ccctttct g chrX:123095212-123095292 28 2.04e-05 GATTTAGGTT CCTTTTCT CCGGCAGGCT chr6:135819429-135819509 64 2.04e-05 AAAACGCCAT CCTTTTCT ACACCTAAT chr3:17902586-17902666 54 2.04e-05 tgtccgtcac ccttttct ttgactcgga chr1:61105891-61105971 17 3.86e-05 tcagggagtt ccctttcc gagtcaaaga chr12:54867514-54867594 18 3.86e-05 TCCCTGATGA CCCTTTCC CACGAGGATC chr5:52856505-52856585 58 3.86e-05 GCTGTAGCTG CCCTTTCC GTTTCCAGGG chr2:114647233-114647313 26 3.86e-05 GGCGCTTCCA CCCTTTCC TCAACCTAGC chr4:85220153-85220233 2 3.86e-05 t ccctttcc aagtcaaaga chr5:62048487-62048567 42 5.90e-05 ctaatactgc ccttttcc aatggcctta chr6:31588625-31588705 40 5.90e-05 GCGCTGACGC CCTTTTCC GGCGCGGGAG chr21:47442724-47442804 31 5.90e-05 GAGTGGGAGC CTCTTTCT GGTCCAGAGC chr15:37392505-37392585 11 5.90e-05 ctctctcgct ctctttct ctctctGGGA chr12:27175551-27175631 37 5.90e-05 CTCTGTCTTT CTCTTTCT TGAGGTAAAG chr2:135809951-135810031 22 6.44e-05 GGCTTAATTT CTTTTTCT CTCCTTCCCC chr14:58764670-58764750 1 7.30e-05 . ACCTTTCT GACAGCTCTG chr12:53689432-53689512 15 9.09e-05 CCAGAGGCAC CTCTTTCC TGCTCTACAT chr18:6683488-6683568 13 1.12e-04 CTTTCAGTGT ACCTTTCC ACGTATTTTC chr19:46917028-46917108 15 1.12e-04 CCACGTCAGC ACCTTTCC TGAAAGGCAG chr9:131873287-131873367 37 1.12e-04 AGTGGTGTGC ACCTTTCC AACTCCGTCT chr12:77158146-77158226 8 1.42e-04 CCCTCCA GCCTTTCT TCCCCGGACT chr12:129594221-12959430 1 1.42e-04 . atttttct cttgctgcca chr14:92588375-92588455 21 1.50e-04 CCCAGCATCG GCTTTTCT ACGTCTTGAA chrX:100646066-100646146 8 1.59e-04 CAGCTTA ATCTTTCC CCCCCTTCGT chr19:2476133-2476213 66 1.83e-04 TTTGCAATAT ATTTTTCC GCCTTTT chr19:23869790-23869870 42 2.11e-04 GTAACTCTCA CCATTTCT AGGCTTCCAG chr1:231473487-231473567 1 2.11e-04 . CCATTTCT CTCCGGGTCT chr7:102678539-102678619 13 2.11e-04 caaatactga gcttttcc cacagtcttc chr7:64466916-64466996 2 2.11e-04 A CCATTTCT AGGCTTCCAG chr7:86669336-86669416 32 2.11e-04 cgaatactgc gcttttcc gacgggctta chr2:175352201-175352281 8 2.42e-04 CAGACTT GTCTTTCC GCTTAACCTC chrX:48858536-48858616 40 2.42e-04 TAGCCGGGTG GTCTTTCC CACCGCGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYTTTCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:21572292-21572372 1.2e-05 71_[+4]_1 chrX:123095212-123095292 2e-05 27_[+4]_45 chr6:135819429-135819509 2e-05 63_[+4]_9 chr3:17902586-17902666 2e-05 53_[+4]_19 chr1:61105891-61105971 3.9e-05 16_[+4]_56 chr12:54867514-54867594 3.9e-05 17_[+4]_55 chr5:52856505-52856585 3.9e-05 57_[+4]_15 chr2:114647233-114647313 3.9e-05 25_[+4]_47 chr4:85220153-85220233 3.9e-05 1_[+4]_71 chr5:62048487-62048567 5.9e-05 41_[+4]_31 chr6:31588625-31588705 5.9e-05 39_[+4]_33 chr21:47442724-47442804 5.9e-05 30_[+4]_42 chr15:37392505-37392585 5.9e-05 10_[+4]_62 chr12:27175551-27175631 5.9e-05 36_[+4]_36 chr2:135809951-135810031 6.4e-05 21_[+4]_51 chr14:58764670-58764750 7.3e-05 [+4]_72 chr12:53689432-53689512 9.1e-05 14_[+4]_58 chr18:6683488-6683568 0.00011 12_[+4]_60 chr19:46917028-46917108 0.00011 14_[+4]_58 chr9:131873287-131873367 0.00011 36_[+4]_36 chr12:77158146-77158226 0.00014 7_[+4]_65 chr12:129594221-12959430 0.00014 [+4]_72 chr14:92588375-92588455 0.00015 20_[+4]_52 chrX:100646066-100646146 0.00016 7_[+4]_65 chr19:2476133-2476213 0.00018 65_[+4]_7 chr19:23869790-23869870 0.00021 41_[+4]_31 chr1:231473487-231473567 0.00021 [+4]_72 chr7:102678539-102678619 0.00021 12_[+4]_60 chr7:64466916-64466996 0.00021 1_[+4]_71 chr7:86669336-86669416 0.00021 31_[+4]_41 chr2:175352201-175352281 0.00024 7_[+4]_65 chrX:48858536-48858616 0.00024 39_[+4]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYTTTCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCYTTTCY width=8 seqs=32 chr12:21572292-21572372 ( 72) CCCTTTCT 1 chrX:123095212-123095292 ( 28) CCTTTTCT 1 chr6:135819429-135819509 ( 64) CCTTTTCT 1 chr3:17902586-17902666 ( 54) CCTTTTCT 1 chr1:61105891-61105971 ( 17) CCCTTTCC 1 chr12:54867514-54867594 ( 18) CCCTTTCC 1 chr5:52856505-52856585 ( 58) CCCTTTCC 1 chr2:114647233-114647313 ( 26) CCCTTTCC 1 chr4:85220153-85220233 ( 2) CCCTTTCC 1 chr5:62048487-62048567 ( 42) CCTTTTCC 1 chr6:31588625-31588705 ( 40) CCTTTTCC 1 chr21:47442724-47442804 ( 31) CTCTTTCT 1 chr15:37392505-37392585 ( 11) CTCTTTCT 1 chr12:27175551-27175631 ( 37) CTCTTTCT 1 chr2:135809951-135810031 ( 22) CTTTTTCT 1 chr14:58764670-58764750 ( 1) ACCTTTCT 1 chr12:53689432-53689512 ( 15) CTCTTTCC 1 chr18:6683488-6683568 ( 13) ACCTTTCC 1 chr19:46917028-46917108 ( 15) ACCTTTCC 1 chr9:131873287-131873367 ( 37) ACCTTTCC 1 chr12:77158146-77158226 ( 8) GCCTTTCT 1 chr12:129594221-12959430 ( 1) ATTTTTCT 1 chr14:92588375-92588455 ( 21) GCTTTTCT 1 chrX:100646066-100646146 ( 8) ATCTTTCC 1 chr19:2476133-2476213 ( 66) ATTTTTCC 1 chr19:23869790-23869870 ( 42) CCATTTCT 1 chr1:231473487-231473567 ( 1) CCATTTCT 1 chr7:102678539-102678619 ( 13) GCTTTTCC 1 chr7:64466916-64466996 ( 2) CCATTTCT 1 chr7:86669336-86669416 ( 32) GCTTTTCC 1 chr2:175352201-175352281 ( 8) GTCTTTCC 1 chrX:48858536-48858616 ( 40) GTCTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYTTTCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 5.4e+001 8 100 -66 -1164 -1164 121 -1164 65 -114 92 -1164 79 -1164 -1164 -1164 233 -1164 -1164 -1164 233 -1164 -1164 -1164 233 -1164 175 -1164 -1164 -1164 84 -1164 123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYTTTCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.4e+001 0.218750 0.593750 0.187500 0.000000 0.000000 0.687500 0.000000 0.312500 0.093750 0.562500 0.000000 0.343750 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.531250 0.000000 0.468750 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYTTTCY MEME-4 regular expression -------------------------------------------------------------------------------- [CA][CT][CT]TTTC[CT] -------------------------------------------------------------------------------- Time 15.69 secs. ******************************************************************************** ******************************************************************************** MOTIF MTGGAAAA MEME-5 width = 8 sites = 16 llr = 150 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 42:1aaa7 pos.-specific C 5::::::: probability G 1:a9:::: matrix T :8:::::3 bits 2.3 *** 2.1 *** 1.9 * *** 1.6 ** *** Relative 1.4 ** **** Entropy 1.2 ******* (13.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGGAAAA consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:152160596-152160676 69 6.67e-06 AAGGAGAGAC ATGGAAAA AAGG chr1:61105891-61105971 53 1.62e-05 acggacgcac ctggaaaa tcgggtctct chr5:62048487-62048567 8 1.62e-05 agggtac ctggaaaa tcgggacact chr5:114598452-114598532 7 1.62e-05 GCAGCG CTGGAAAA ATCGCACGTG chr12:7000097-7000177 27 1.62e-05 gactacagaa ctggaaaa tggcaaagtc chr4:85220153-85220233 39 1.62e-05 cggacggcac ctggaaaa tggggtcact chr2:152561283-152561363 25 2.27e-05 ggtacctcag atggaaat gcagaaatca chr7:39053001-39053081 61 2.27e-05 ggtacctcag atggaaat gcagaaatca chr6:133469081-133469161 73 2.27e-05 ggtacctcag atggaaat chr15:51329749-51329829 8 2.27e-05 acctcag atggaaat gcagaaatca chr8:103876290-103876370 64 3.88e-05 CAGAAGAAAA AAGGAAAA ACTGCGGCC chr7:25894924-25895004 65 4.34e-05 ACGGAGAAGA ATGAAAAA TCACTTTG chr12:32908712-32908792 65 5.34e-05 CCACCGGCCC CAGGAAAA GGACCGCA chr7:99716902-99716982 14 5.34e-05 GCGCGGGGAG CAGGAAAA CTCTAGCGGC chr20:34330605-34330685 64 7.63e-05 TGGAGAGGAA GTGGAAAA GTGTATCAG chr22:42486639-42486719 45 9.68e-05 CATGTCCCGA CTGAAAAT GGGCTTCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:152160596-152160676 6.7e-06 68_[+5]_4 chr1:61105891-61105971 1.6e-05 52_[+5]_20 chr5:62048487-62048567 1.6e-05 7_[+5]_65 chr5:114598452-114598532 1.6e-05 6_[+5]_66 chr12:7000097-7000177 1.6e-05 26_[+5]_46 chr4:85220153-85220233 1.6e-05 38_[+5]_34 chr2:152561283-152561363 2.3e-05 24_[+5]_48 chr7:39053001-39053081 2.3e-05 60_[+5]_12 chr6:133469081-133469161 2.3e-05 72_[+5] chr15:51329749-51329829 2.3e-05 7_[+5]_65 chr8:103876290-103876370 3.9e-05 63_[+5]_9 chr7:25894924-25895004 4.3e-05 64_[+5]_8 chr12:32908712-32908792 5.3e-05 64_[+5]_8 chr7:99716902-99716982 5.3e-05 13_[+5]_59 chr20:34330605-34330685 7.6e-05 63_[+5]_9 chr22:42486639-42486719 9.7e-05 44_[+5]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGGAAAA width=8 seqs=16 chr7:152160596-152160676 ( 69) ATGGAAAA 1 chr1:61105891-61105971 ( 53) CTGGAAAA 1 chr5:62048487-62048567 ( 8) CTGGAAAA 1 chr5:114598452-114598532 ( 7) CTGGAAAA 1 chr12:7000097-7000177 ( 27) CTGGAAAA 1 chr4:85220153-85220233 ( 39) CTGGAAAA 1 chr2:152561283-152561363 ( 25) ATGGAAAT 1 chr7:39053001-39053081 ( 61) ATGGAAAT 1 chr6:133469081-133469161 ( 73) ATGGAAAT 1 chr15:51329749-51329829 ( 8) ATGGAAAT 1 chr8:103876290-103876370 ( 64) AAGGAAAA 1 chr7:25894924-25895004 ( 65) ATGAAAAA 1 chr12:32908712-32908792 ( 65) CAGGAAAA 1 chr7:99716902-99716982 ( 14) CAGGAAAA 1 chr20:34330605-34330685 ( 64) GTGGAAAA 1 chr22:42486639-42486719 ( 45) CTGAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 3.1e+003 108 75 -224 -1064 -14 -1064 -1064 203 -1064 -1064 175 -1064 -73 -1064 156 -1064 227 -1064 -1064 -1064 227 -1064 -1064 -1064 227 -1064 -1064 -1064 173 -1064 -1064 65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.1e+003 0.437500 0.500000 0.062500 0.000000 0.187500 0.000000 0.000000 0.812500 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.687500 0.000000 0.000000 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- [CA]TGGAAA[AT] -------------------------------------------------------------------------------- Time 19.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:156087853-156087933 1.87e-03 39_[+1(4.84e-06)]_4_[+1(4.84e-06)]_\ 21 chr6:89130815-89130895 5.27e-01 80 chr10:105127710-10512779 9.99e-01 80 chr17:53654040-53654120 1.47e-01 80 chr1:29676517-29676597 3.17e-01 80 chrX:102470061-102470141 8.83e-01 80 chr9:103289630-103289710 9.52e-01 80 chr7:25894924-25895004 1.03e-02 38_[+1(8.71e-05)]_18_[+5(4.34e-05)]_\ 8 chr2:175412140-175412220 8.87e-01 80 chr2:67624503-67624583 1.36e-02 80 chr3:15228229-15228309 4.42e-02 80 chr6:161695264-161695344 8.91e-03 80 chr6:28722499-28722579 1.37e-03 62_[+1(3.69e-05)]_10 chr15:26874100-26874180 6.08e-01 80 chrX:1021025-1021105 7.34e-02 72_[+1(6.25e-05)] chr12:108954809-10895488 8.82e-01 80 chr12:104229629-10422970 4.33e-04 11_[+1(1.18e-05)]_61 chr11:62341185-62341265 7.78e-01 80 chr14:91976541-91976621 5.75e-01 80 chr7:105516781-105516861 4.36e-02 80 chr12:129594221-12959430 2.63e-01 80 chr3:180630522-180630602 8.86e-01 80 chr11:118662007-11866208 1.33e-02 59_[+1(7.71e-05)]_13 chrX:48980330-48980410 9.96e-01 80 chr7:156194999-156195079 3.43e-01 80 chr4:2010584-2010664 1.00e+00 80 chr11:71640162-71640242 9.87e-01 80 chr5:170921653-170921733 3.76e-03 2_[+1(9.40e-05)]_70 chr17:45569709-45569789 9.94e-01 80 chr12:27175551-27175631 7.62e-03 36_[+4(5.90e-05)]_36 chr14:61201492-61201572 7.40e-01 80 chr15:37392505-37392585 1.73e-01 10_[+4(5.90e-05)]_62 chr1:197964793-197964873 2.48e-02 3_[+1(6.25e-05)]_69 chr7:134617896-134617976 6.94e-03 71_[+1(1.18e-05)]_1 chr16:75467929-75468009 7.50e-02 80 chrX:71496938-71497018 9.99e-01 80 chr9:32552341-32552421 9.98e-01 80 chr4:85220153-85220233 1.84e-05 1_[+4(3.86e-05)]_5_[+1(1.87e-05)]_\ 16_[+5(1.62e-05)]_34 chr21:20132254-20132334 1.30e-01 26_[+1(8.71e-05)]_46 chr5:40798155-40798235 7.37e-01 80 chr6:31790041-31790121 4.04e-01 80 chr20:30945677-30945757 7.14e-01 80 chr4:83956462-83956542 3.49e-02 28_[+1(1.87e-05)]_44 chr12:113623600-11362368 1.00e+00 80 chr16:15982319-15982399 5.49e-01 80 chr7:53879467-53879547 3.93e-01 80 chr11:107328380-10732846 4.55e-01 80 chr16:15667909-15667989 2.55e-01 80 chr18:3603733-3603813 1.14e-02 80 chr13:99852778-99852858 9.94e-01 80 chr7:77325854-77325934 5.76e-01 80 chr15:51329749-51329829 5.17e-02 7_[+5(2.27e-05)]_65 chr18:53184438-53184518 2.98e-02 80 chr1:113161635-113161715 9.89e-01 80 chr6:133469081-133469161 1.29e-01 72_[+5(2.27e-05)] chr7:39053001-39053081 3.53e-02 60_[+5(2.27e-05)]_12 chr14:23564203-23564283 9.56e-01 80 chr7:39988960-39989040 9.09e-01 80 chr8:74205695-74205775 2.08e-02 63_[+1(4.87e-05)]_9 chr3:120461210-120461290 6.88e-01 80 chr11:34938293-34938373 8.94e-01 80 chr17:8286371-8286451 9.86e-01 80 chr7:86669336-86669416 1.31e-01 80 chr9:131873287-131873367 3.90e-02 80 chrX:71459087-71459167 7.67e-01 80 chr1:67895949-67896029 7.78e-01 80 chr5:137514188-137514268 4.39e-02 80 chrX:118925436-118925516 4.90e-01 80 chr1:100715282-100715362 9.12e-01 80 chr8:27132124-27132204 8.74e-01 80 chr12:21572292-21572372 3.43e-02 71_[+4(1.22e-05)]_1 chrX:48858536-48858616 2.74e-01 80 chr7:22862350-22862430 3.61e-01 80 chr2:152561283-152561363 7.32e-02 24_[+5(2.27e-05)]_48 chr4:76439345-76439425 7.84e-01 80 chr14:92588375-92588455 1.17e-01 80 chr2:76099427-76099507 5.79e-01 80 chr2:217363633-217363713 8.82e-01 80 chr12:80328622-80328702 9.16e-01 80 chr21:47744213-47744293 6.51e-01 80 chr2:232571998-232572078 9.71e-01 80 chr1:249132703-249132783 9.97e-01 80 chr22:36925047-36925127 8.32e-01 80 chr1:245509046-245509126 4.54e-01 80 chr1:87379673-87379753 9.96e-01 80 chr8:103876290-103876370 2.85e-03 55_[+1(1.18e-05)]_[+5(3.88e-05)]_9 chr5:103415740-103415820 1.49e-05 8_[+3(4.13e-06)]_12_[+2(2.66e-06)]_\ 44 chr2:180871686-180871766 5.24e-01 80 chr22:30163429-30163509 8.93e-01 80 chr19:56135852-56135932 1.00e+00 80 chr1:150337265-150337345 2.33e-01 80 chr10:103578089-10357816 9.54e-02 80 chr1:150336222-150336302 2.69e-01 80 chr19:49999730-49999810 1.00e+00 80 chr2:70121080-70121160 8.38e-01 80 chr3:6382693-6382773 3.68e-02 50_[+1(1.87e-05)]_22 chr9:132350163-132350243 1.00e-01 80 chrX:123094535-123094615 8.61e-02 80 chr6:30923365-30923445 8.92e-01 80 chr4:88311299-88311379 3.24e-04 3_[+3(4.13e-06)]_9_[+2(8.73e-05)]_\ 52 chr12:12420304-12420384 1.00e+00 80 chr3:17902586-17902666 7.76e-03 53_[+4(2.04e-05)]_19 chr14:23398421-23398501 9.21e-01 80 chr12:7000097-7000177 9.02e-02 26_[+5(1.62e-05)]_46 chr14:21737484-21737564 9.02e-01 80 chr19:14887553-14887633 6.31e-01 80 chr1:16971388-16971468 8.84e-01 80 chr22:42475836-42475916 6.91e-01 80 chr2:242254889-242254969 5.56e-01 80 chr7:134896150-134896230 8.92e-01 80 chr8:20054936-20055016 9.89e-01 80 chr19:14063353-14063433 9.94e-01 80 chr1:62901790-62901870 5.05e-01 80 chr15:72529782-72529862 9.74e-01 80 chr1:155197645-155197725 2.51e-01 80 chr12:111180971-11118105 2.31e-01 80 chr3:187608315-187608395 9.50e-01 80 chr1:59165594-59165674 5.05e-01 80 chr11:76155591-76155671 1.26e-01 80 chr3:178577842-178577922 9.94e-01 80 chr6:42713700-42713780 8.16e-01 80 chr1:244615051-244615131 1.00e+00 80 chr22:41347405-41347485 9.67e-02 80 chr6:33239354-33239434 9.23e-01 80 chr3:170602141-170602221 4.19e-01 80 chr2:27851930-27852010 9.90e-01 80 chr20:44601326-44601406 1.09e-01 80 chr14:31494867-31494947 6.17e-01 80 chr9:108545142-108545222 9.98e-01 80 chr1:161129307-161129387 9.67e-01 80 chr7:64466916-64466996 2.40e-01 80 chr2:69664399-69664479 6.54e-01 80 chr3:169684616-169684696 7.16e-01 80 chr7:102678539-102678619 1.28e-01 80 chr7:10979645-10979725 2.61e-02 80 chr6:40132124-40132204 2.90e-01 80 chr10:11936614-11936694 9.50e-01 80 chr17:11900994-11901074 5.03e-01 80 chr22:32149633-32149713 3.43e-02 12_[+1(9.40e-05)]_60 chr1:231473487-231473567 5.55e-01 80 chr2:175352201-175352281 5.37e-02 80 chr19:46917028-46917108 2.68e-01 80 chr6:34393706-34393786 6.48e-01 80 chr15:66874521-66874601 5.68e-01 80 chr7:150019275-150019355 2.93e-01 80 chr21:47442724-47442804 3.41e-01 30_[+4(5.90e-05)]_42 chr3:40341586-40341666 4.20e-02 80 chr6:135819429-135819509 1.92e-05 37_[+1(2.69e-05)]_18_[+4(2.04e-05)]_\ 9 chr19:52693375-52693455 9.98e-01 80 chr17:4699547-4699627 4.48e-01 80 chr19:38865441-38865521 9.68e-01 80 chr9:135545648-135545728 2.92e-01 80 chr19:5622662-5622742 8.82e-01 80 chr7:93220726-93220806 1.60e-04 19_[+3(4.13e-06)]_12_[+2(8.73e-05)]_\ 33 chr9:128004079-128004159 7.21e-01 80 chr20:49574973-49575053 8.59e-01 80 chr3:197518158-197518238 9.97e-01 80 chr1:100503770-100503850 5.31e-02 80 chr1:113162549-113162629 2.07e-02 43_[+5(5.34e-05)]_29 chr2:8822195-8822275 1.00e+00 80 chr4:140216823-140216903 8.25e-01 80 chr5:137089925-137090005 4.17e-01 80 chr7:123168030-123168110 1.82e-05 28_[+3(4.13e-06)]_12_[+2(2.66e-06)]_\ 24 chr17:37607408-37607488 1.05e-01 60_[+1(8.71e-05)]_12 chrX:74376027-74376107 4.17e-01 80 chr12:53689432-53689512 4.16e-01 14_[+4(9.09e-05)]_58 chr12:133707267-13370734 4.11e-01 80 chr16:31724641-31724721 1.75e-01 80 chr7:152160596-152160676 6.50e-03 68_[+5(6.67e-06)]_4 chr22:19842176-19842256 7.73e-01 80 chr16:70557265-70557345 9.35e-01 80 chr7:64498806-64498886 5.63e-01 80 chr1:196987059-196987139 1.59e-01 80 chr2:135809951-135810031 1.44e-01 21_[+4(6.44e-05)]_51 chr1:38478507-38478587 2.46e-01 80 chr18:47018727-47018807 9.98e-01 80 chr12:77158146-77158226 3.83e-01 80 chr1:226496689-226496769 9.92e-01 80 chr6:126307698-126307778 9.64e-01 80 chr18:6683488-6683568 2.97e-02 80 chr4:80132832-80132912 3.49e-02 80 chr7:102212864-102212944 7.53e-01 80 chr17:73257987-73258067 9.93e-01 80 chr8:67974263-67974343 4.63e-01 80 chr19:11925139-11925219 6.55e-01 80 chr20:34330605-34330685 8.65e-02 63_[+5(7.63e-05)]_9 chr12:95397351-95397431 9.31e-03 21_[+1(4.87e-05)]_51 chr2:114647233-114647313 9.46e-03 25_[+4(3.86e-05)]_47 chr5:52856505-52856585 5.95e-02 57_[+4(3.86e-05)]_15 chr5:170814360-170814440 8.40e-01 80 chr11:3402226-3402306 3.41e-01 80 chr16:70557794-70557874 1.28e-01 80 chr19:23869790-23869870 3.92e-01 80 chr10:5488583-5488663 4.98e-02 54_[+1(1.18e-05)]_18 chr6:99841913-99841993 4.46e-02 80 chr4:174255356-174255436 6.95e-01 80 chr17:40169318-40169398 9.98e-01 80 chrX:100646066-100646146 1.40e-01 80 chr5:180670768-180670848 9.66e-01 80 chr6:157008287-157008367 1.94e-01 80 chr3:197677150-197677230 4.41e-01 80 chr6:31588625-31588705 3.08e-01 39_[+4(5.90e-05)]_33 chr19:2476133-2476213 3.89e-02 80 chr1:16162715-16162795 1.65e-01 80 chr17:7487228-7487308 5.20e-02 80 chr1:36626693-36626773 6.34e-01 80 chr15:41624611-41624691 3.34e-01 80 chr10:116698037-11669811 1.04e-01 80 chr10:101190283-10119036 9.62e-01 80 chr10:74451851-74451931 5.55e-01 80 chr14:58764670-58764750 5.22e-02 [+4(7.30e-05)]_72 chr2:88927467-88927547 7.83e-02 80 chr16:14014085-14014165 7.89e-01 80 chr8:77767921-77768001 4.17e-01 80 chr12:54719021-54719101 1.20e-01 80 chr12:123011347-12301142 4.47e-03 80 chr7:139677017-139677097 1.41e-01 80 chr5:114598452-114598532 4.29e-02 6_[+5(1.62e-05)]_66 chr7:145481778-145481858 1.87e-01 80 chr1:16212696-16212776 3.52e-01 80 chr16:2827515-2827595 9.98e-01 80 chr7:42972004-42972084 9.99e-01 80 chr12:54867514-54867594 2.22e-01 17_[+4(3.86e-05)]_55 chr1:18748602-18748682 1.49e-01 80 chr11:77531662-77531742 9.81e-01 80 chr22:42486639-42486719 1.72e-01 44_[+5(9.68e-05)]_28 chrX:123095212-123095292 7.84e-02 27_[+4(2.04e-05)]_45 chr18:1521913-1521993 3.56e-03 11_[+2(2.66e-06)]_61 chr2:176569431-176569511 9.89e-01 80 chr17:28443879-28443959 1.32e-01 80 chr12:54069678-54069758 8.51e-01 80 chrX:122866774-122866854 4.44e-01 80 chr16:31470887-31470967 4.84e-01 80 chr3:53916050-53916130 6.50e-01 80 chr19:16222753-16222833 2.94e-01 80 chr1:222791469-222791549 1.00e+00 80 chr6:134343863-134343943 5.50e-02 55_[+1(2.69e-05)]_17 chr20:33543429-33543509 3.02e-01 80 chr20:44563391-44563471 9.77e-01 80 chr16:67867659-67867739 1.00e+00 80 chr5:62048487-62048567 7.20e-04 7_[+5(1.62e-05)]_26_[+4(5.90e-05)]_\ 31 chr14:65381236-65381316 9.71e-01 80 chr7:99716902-99716982 1.37e-01 13_[+5(5.34e-05)]_59 chr2:208890192-208890272 9.36e-01 80 chr8:97247629-97247709 5.63e-02 31_[+1(4.87e-05)]_41 chr1:61105891-61105971 2.21e-05 16_[+4(3.86e-05)]_5_[+1(1.87e-05)]_\ 15_[+5(1.62e-05)]_20 chr17:62502313-62502393 9.50e-01 80 chrX:77041557-77041637 5.74e-01 80 chr12:32908712-32908792 7.73e-02 64_[+5(5.34e-05)]_8 chr12:120966857-12096693 1.00e+00 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************