******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF15.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr13:91080923-91081003 1.0000 80 chr22:20794398-20794478 1.0000 80 chr22:21346176-21346256 1.0000 80 chr22:20800835-20800915 1.0000 80 chr22:22316670-22316750 1.0000 80 chr6:31747507-31747587 1.0000 80 chr4:114900744-114900824 1.0000 80 chr22:21311065-21311145 1.0000 80 chr22:19831534-19831614 1.0000 80 chr17:79825749-79825829 1.0000 80 chr22:19872618-19872698 1.0000 80 chr3:149687941-149688021 1.0000 80 chr7:150807337-150807417 1.0000 80 chr4:1810791-1810871 1.0000 80 chr5:134813566-134813646 1.0000 80 chr22:21382303-21382383 1.0000 80 chr22:20154381-20154461 1.0000 80 chr22:21075423-21075503 1.0000 80 chr22:19503784-19503864 1.0000 80 chr22:22082191-22082271 1.0000 80 chr22:19058537-19058617 1.0000 80 chr22:19806648-19806728 1.0000 80 chr22:22043382-22043462 1.0000 80 chr22:19164241-19164321 1.0000 80 chr22:23039776-23039856 1.0000 80 chr22:21810062-21810142 1.0000 80 chr22:20929260-20929340 1.0000 80 chr22:21009147-21009227 1.0000 80 chr22:20186487-20186567 1.0000 80 chr22:22037929-22038009 1.0000 80 chr22:22050572-22050652 1.0000 80 chr7:150710145-150710225 1.0000 80 chr22:22039292-22039372 1.0000 80 chr22:19026835-19026915 1.0000 80 chr22:20228569-20228649 1.0000 80 chr22:19881035-19881115 1.0000 80 chr22:21805966-21806046 1.0000 80 chr1:38274681-38274761 1.0000 80 chr22:19675173-19675253 1.0000 80 chr22:22080716-22080796 1.0000 80 chr22:23403035-23403115 1.0000 80 chr1:27057845-27057925 1.0000 80 chr22:20755758-20755838 1.0000 80 chr22:22314706-22314786 1.0000 80 chr1:16959625-16959705 1.0000 80 chr22:22053308-22053388 1.0000 80 chr7:99751604-99751684 1.0000 80 chr22:22324786-22324866 1.0000 80 chr22:19836201-19836281 1.0000 80 chr22:19240851-19240931 1.0000 80 chr3:119813388-119813468 1.0000 80 chr22:23254151-23254231 1.0000 80 chr6:34541504-34541584 1.0000 80 chr5:179036438-179036518 1.0000 80 chr22:20134838-20134918 1.0000 80 chr22:19812453-19812533 1.0000 80 chr17:7145741-7145821 1.0000 80 chr13:92245010-92245090 1.0000 80 chr22:23420827-23420907 1.0000 80 chr9:103361125-103361205 1.0000 80 chr15:44740316-44740396 1.0000 80 chr9:139617878-139617958 1.0000 80 chr22:19614837-19614917 1.0000 80 chr5:56111267-56111347 1.0000 80 chr5:122181498-122181578 1.0000 80 chr22:20201721-20201801 1.0000 80 chr16:576072-576152 1.0000 80 chr9:126031166-126031246 1.0000 80 chr22:19928501-19928581 1.0000 80 chr22:21458113-21458193 1.0000 80 chr16:88780772-88780852 1.0000 80 chr1:76262821-76262901 1.0000 80 chr19:10226259-10226339 1.0000 80 chr22:22044313-22044393 1.0000 80 chr22:19739523-19739603 1.0000 80 chr17:79857776-79857856 1.0000 80 chr1:203241655-203241735 1.0000 80 chr11:118963899-11896397 1.0000 80 chr22:22051384-22051464 1.0000 80 chr21:11143826-11143906 1.0000 80 chr19:5692490-5692570 1.0000 80 chr9:139563732-139563812 1.0000 80 chr17:56405173-56405253 1.0000 80 chr22:23268676-23268756 1.0000 80 chr19:8389630-8389710 1.0000 80 chr22:19812236-19812316 1.0000 80 chr9:139569022-139569102 1.0000 80 chr16:89632257-89632337 1.0000 80 chr22:19882898-19882978 1.0000 80 chr22:19599272-19599352 1.0000 80 chr10:97416503-97416583 1.0000 80 chr20:62328684-62328764 1.0000 80 chr11:72533279-72533359 1.0000 80 chr8:21777029-21777109 1.0000 80 chr6:112408662-112408742 1.0000 80 chr22:20099455-20099535 1.0000 80 chr7:157520733-157520813 1.0000 80 chr19:10225326-10225406 1.0000 80 chr22:23269756-23269836 1.0000 80 chr11:77532149-77532229 1.0000 80 chr22:22032268-22032348 1.0000 80 chr5:133863002-133863082 1.0000 80 chr22:22277027-22277107 1.0000 80 chr22:19987862-19987942 1.0000 80 chr22:21343167-21343247 1.0000 80 chr2:149402919-149402999 1.0000 80 chr22:23427048-23427128 1.0000 80 chr22:19114549-19114629 1.0000 80 chr22:20101407-20101487 1.0000 80 chr22:22322234-22322314 1.0000 80 chrX:136520421-136520501 1.0000 80 chr14:95623810-95623890 1.0000 80 chr6:41863174-41863254 1.0000 80 chr11:61447785-61447865 1.0000 80 chr22:20115028-20115108 1.0000 80 chr12:30908069-30908149 1.0000 80 chr16:2014395-2014475 1.0000 80 chr7:157189889-157189969 1.0000 80 chr2:196521832-196521912 1.0000 80 chr16:88876201-88876281 1.0000 80 chr5:81570311-81570391 1.0000 80 chr11:820409-820489 1.0000 80 chr11:64053182-64053262 1.0000 80 chr14:88237704-88237784 1.0000 80 chr22:19958493-19958573 1.0000 80 chr19:58983405-58983485 1.0000 80 chr1:85039974-85040054 1.0000 80 chr11:118965039-11896511 1.0000 80 chr20:443236-443316 1.0000 80 chr19:54713327-54713407 1.0000 80 chr22:18982581-18982661 1.0000 80 chr6:74230103-74230183 1.0000 80 chr17:27052822-27052902 1.0000 80 chr22:38902432-38902512 1.0000 80 chr22:19868521-19868601 1.0000 80 chr22:20040370-20040450 1.0000 80 chr15:34875852-34875932 1.0000 80 chr3:167452405-167452485 1.0000 80 chr22:21805353-21805433 1.0000 80 chr21:45278964-45279044 1.0000 80 chr22:23269957-23270037 1.0000 80 chr22:22415285-22415365 1.0000 80 chr6:119558577-119558657 1.0000 80 chr22:20310244-20310324 1.0000 80 chr2:190649028-190649108 1.0000 80 chr8:82754690-82754770 1.0000 80 chr4:166248480-166248560 1.0000 80 chr22:19875074-19875154 1.0000 80 chr21:44255108-44255188 1.0000 80 chr21:46495112-46495192 1.0000 80 chr1:28837191-28837271 1.0000 80 chr9:130829566-130829646 1.0000 80 chr22:20100603-20100683 1.0000 80 chr6:27101657-27101737 1.0000 80 chr22:21341841-21341921 1.0000 80 chr2:232579512-232579592 1.0000 80 chr5:137802698-137802778 1.0000 80 chr22:19024374-19024454 1.0000 80 chr7:35840702-35840782 1.0000 80 chr16:53738006-53738086 1.0000 80 chr16:2203012-2203092 1.0000 80 chr9:139735357-139735437 1.0000 80 chr16:776549-776629 1.0000 80 chr22:38902638-38902718 1.0000 80 chr22:20051023-20051103 1.0000 80 chr16:1828395-1828475 1.0000 80 chr12:7053640-7053720 1.0000 80 chr22:22325613-22325693 1.0000 80 chr22:21457284-21457364 1.0000 80 chr2:97544052-97544132 1.0000 80 chr22:19745456-19745536 1.0000 80 chr22:22313518-22313598 1.0000 80 chr22:21386318-21386398 1.0000 80 chr2:216973929-216974009 1.0000 80 chr1:149859281-149859361 1.0000 80 chr21:45225970-45226050 1.0000 80 chr22:20165769-20165849 1.0000 80 chr12:53876455-53876535 1.0000 80 chr16:88936120-88936200 1.0000 80 chr13:91816705-91816785 1.0000 80 chr16:30671469-30671549 1.0000 80 chr11:65194892-65194972 1.0000 80 chr17:72208605-72208685 1.0000 80 chr22:22552565-22552645 1.0000 80 chr17:56085029-56085109 1.0000 80 chr1:213032231-213032311 1.0000 80 chr22:19959925-19960005 1.0000 80 chr22:20103456-20103536 1.0000 80 chr22:19712836-19712916 1.0000 80 chr6:34360469-34360549 1.0000 80 chr22:19055662-19055742 1.0000 80 chr22:20195417-20195497 1.0000 80 chr2:232578583-232578663 1.0000 80 chr22:20098750-20098830 1.0000 80 chr22:20144423-20144503 1.0000 80 chr17:61850910-61850990 1.0000 80 chr2:133015203-133015283 1.0000 80 chr11:10830602-10830682 1.0000 80 chr7:26240442-26240522 1.0000 80 chr9:140473771-140473851 1.0000 80 chr21:46494078-46494158 1.0000 80 chr6:33172841-33172921 1.0000 80 chr16:88595545-88595625 1.0000 80 chr20:44600589-44600669 1.0000 80 chr12:125398683-12539876 1.0000 80 chr22:19863999-19864079 1.0000 80 chr22:19167815-19167895 1.0000 80 chr17:79223412-79223492 1.0000 80 chr2:232574245-232574325 1.0000 80 chr1:27561023-27561103 1.0000 80 chr7:128045156-128045236 1.0000 80 chr21:44500018-44500098 1.0000 80 chr1:16940143-16940223 1.0000 80 chr6:31626910-31626990 1.0000 80 chr6:44223011-44223091 1.0000 80 chr19:13266471-13266551 1.0000 80 chr1:1266887-1266967 1.0000 80 chr16:2203657-2203737 1.0000 80 chr17:62501642-62501722 1.0000 80 chr18:4510853-4510933 1.0000 80 chr22:21018494-21018574 1.0000 80 chr4:119200075-119200155 1.0000 80 chr3:167452648-167452728 1.0000 80 chr19:12903543-12903623 1.0000 80 chr22:23104788-23104868 1.0000 80 chr3:146262334-146262414 1.0000 80 chr19:49934764-49934844 1.0000 80 chr22:22415486-22415566 1.0000 80 chr17:79218293-79218373 1.0000 80 chr1:27816746-27816826 1.0000 80 chr7:128524058-128524138 1.0000 80 chr22:19629729-19629809 1.0000 80 chr16:68297826-68297906 1.0000 80 chr3:14167613-14167693 1.0000 80 chr22:21321852-21321932 1.0000 80 chr6:34203712-34203792 1.0000 80 chr17:79362275-79362355 1.0000 80 chr17:56405908-56405988 1.0000 80 chr22:23369237-23369317 1.0000 80 chr7:26240641-26240721 1.0000 80 chr11:65190488-65190568 1.0000 80 chr17:56409537-56409617 1.0000 80 chr1:145075611-145075691 1.0000 80 chr22:19505783-19505863 1.0000 80 chr1:173836732-173836812 1.0000 80 chr17:56406852-56406932 1.0000 80 chr13:91079772-91079852 1.0000 80 chr22:20226157-20226237 1.0000 80 chr6:26056272-26056352 1.0000 80 chr6:26027289-26027369 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TAF15/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF15.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.177 C 0.331 G 0.317 T 0.175 Background letter frequencies (from file dataset with add-one prior applied): A 0.177 C 0.331 G 0.317 T 0.175 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGSSCWG MEME-1 width = 8 sites = 123 llr = 771 E-value = 1.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSSCWG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 17:11:4: pos.-specific C 7::34a:: probability G 3:a55::a matrix T :3:2::6: bits 2.5 2.3 2.0 1.8 * * Relative 1.5 ** *** Entropy 1.3 ** *** (9.0 bits) 1.0 ** *** 0.8 ** *** 0.5 *** **** 0.3 *** **** 0.0 -------- Multilevel CAGGGCTG consensus GT CC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCWG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:10830602-10830682 14 3.43e-05 GGAGGAGCCA CAGGGCTG AGCTCGGTTG chr11:65194892-65194972 28 3.43e-05 CCATGAGCTG CAGGGCTG GTTGCCGTCC chr22:23269957-23270037 32 3.43e-05 cacagctgcc cagggctg cacagatggt chr15:34875852-34875932 41 3.43e-05 GGAAAGCACG CAGGGCTG CCGCTACCTG chr22:18982581-18982661 45 3.43e-05 GGCCCCTCCC CAGGGCTG CGCTGTAGCT chr22:19958493-19958573 41 3.43e-05 GTGCCTGGGA CAGGGCTG TGGGCCCAGG chr22:22044313-22044393 28 3.43e-05 ATGTTACGAG CAGGGCTG GCTGTGGCTT chr22:19831534-19831614 14 3.43e-05 CCAGGTGCCC CAGGGCTG GCCACCAGCA chr22:22316670-22316750 43 3.43e-05 GCTGGGCACA CAGGGCTG GCGGGGCAGC chr22:19167815-19167895 29 7.01e-05 ACCACACCCT CAGGCCTG TGTTTGCCCC chr21:44255108-44255188 31 7.01e-05 ggtccatctt caggcctg tagacagaaa chr22:19812236-19812316 44 7.01e-05 GAGGCAGGGG CAGGCCTG CAAATGTCCT chr9:139563732-139563812 72 7.01e-05 GGGGCACACA CAGGCCTG G chr22:19863999-19864079 71 1.05e-04 ACCAGATGTG CAGGGCAG GC chr16:2203012-2203092 41 1.05e-04 CAAGGTGAGT CAGGGCAG GGGGGTGGTG chr22:22053308-22053388 12 1.05e-04 CCATGCCCAC CAGGGCAG CGGCATTTCC chr22:19505783-19505863 63 1.41e-04 CTCCCAGGGC CAGGCCAG CCCCATCCTG chr11:65190488-65190568 13 1.41e-04 AGCCACGCTC CAGGCCAG GCTGTCCCTA chr22:23369237-23369317 41 1.41e-04 ggggacatgg caggccag ggtggtcttg chr19:58983405-58983485 9 1.41e-04 TGCACCCC CAGGCCAG GTCTGTTGCC chr22:19614837-19614917 49 1.41e-04 AGGCCGTGTC CAGGCCAG CTTCACCCTG chr17:79825749-79825829 63 1.41e-04 GAACAGGCGC CAGGCCAG TGGCCCAGGG chr7:128524058-128524138 15 1.96e-04 GGTGGGACAG CAGTGCTG GGGCCCAGGG chr6:41863174-41863254 15 1.96e-04 GCCAACGGCG CAGCGCTG GGCCGCGACC chr2:149402919-149402999 41 1.96e-04 GATTAGCTCG CAGCGCTG CTTACGCTGC chr11:77532149-77532229 65 1.96e-04 GATCCCGAAG CAGCGCTG GGAGCGTA chr5:179036438-179036518 56 1.96e-04 CCTGCTCCTG CAGCGCTG CTCCTCCACG chr22:22043382-22043462 52 1.96e-04 TGTGGCCAGG CAGTGCTG GGGGAGGTCA chr17:79223412-79223492 59 2.29e-04 ACCACGGGGA CTGGGCTG CAGAAGGCAC chr12:53876455-53876535 67 2.29e-04 CCAGGTGAAT CTGGGCTG GTGGAG chr22:23268676-23268756 25 2.29e-04 CACGCAGGCT CTGGGCTG TCAGGATGGG chr4:119200075-119200155 43 2.87e-04 CGTCCACGTG CAGCCCTG GACCCTGAAC chr1:1266887-1266967 12 2.87e-04 CACGGCCCAG CAGCCCTG TGTGCACCAG chr22:22051384-22051464 30 2.87e-04 AGGCCTGGTG CAGCCCTG GCAGTAACTG chr22:19739523-19739603 12 2.87e-04 TGGCAGCCCC CAGCCCTG CATCGCCACC chr22:19812453-19812533 23 2.87e-04 TCGGGCTGCA CAGCCCTG TGCTCAGTCC chr17:79218293-79218373 56 4.10e-04 CGCCAGGTGA GAGGGCTG TGGAGCGTGT chr16:2203657-2203737 71 4.10e-04 CCAGGTGAGG GAGGGCTG GG chr6:34360469-34360549 14 4.10e-04 CGCGCGCTCG CAGCGCAG GCCGCGTTCG chr16:1828395-1828475 4 4.10e-04 CCG CAGTGCAG TCCCAGCAGG chr4:166248480-166248560 4 4.10e-04 GCA CAGCGCAG GCTCTCACTG chr22:19868521-19868601 42 4.10e-04 GCTGACCTCG GAGGGCTG CCCCATGACC chr19:8389630-8389710 67 4.10e-04 TGGCCAGCAT GAGGGCTG TCTGCC chr1:203241655-203241735 46 4.10e-04 AGAACCCAGC CTGGCCTG GCTTCAGGAG chr22:21075423-21075503 68 4.10e-04 TGAGCTGGGG CAGTGCAG GCTGG chr5:134813566-134813646 48 4.10e-04 GGCCGTCTGC CTGGCCTG GGGTGCCCCC chr13:92245010-92245090 24 4.44e-04 agcatccagg ctgggcag tggaggctgc chr22:20226157-20226237 25 5.36e-04 TCCCCAGGAG CAGCCCAG CCTGGGCCCG chr16:68297826-68297906 56 5.36e-04 GAGCCCCAGG GAGGCCTG GGGTTGGCAA chr22:22415486-22415566 49 5.36e-04 CTTCACTGCA CAGTCCAG GACGGCACAA chr22:21386318-21386398 47 5.36e-04 GGCAGCAAAG GAGGCCTG GTGAGGCCCC chr22:22415285-22415365 1 5.36e-04 . CAGTCCAG GTACATCCCA chr6:34541504-34541584 32 5.36e-04 TCTGGAAGAT GAGGCCTG GGCGGGCCTA chr22:21009147-21009227 9 5.36e-04 GCCCCTCC CAGCCCAG CATCTCTCCC chr22:20195417-20195497 33 6.25e-04 GATTCCTCCC CTGGCCAG CACTCGGGGA chr22:20115028-20115108 69 6.25e-04 GTGAGGGAGC CTGGCCAG GGGT chr16:89632257-89632337 42 6.25e-04 CCGTCCCAGG GAGGGCAG CCAAGCTGTG chr16:576072-576152 14 6.25e-04 CCACTGGCCC CTGGCCAG GGAGCCACCT chr22:22039292-22039372 42 6.25e-04 CAGGATCCCC CAGAGCTG TGGTGCCCCT chr22:20186487-20186567 20 6.25e-04 ACAGCAAGGG GAGGGCAG CCGCCTGGAG chr22:19503784-19503864 50 6.25e-04 GTGGGTACGG GAGGGCAG GTGTTTGGAG chr17:79362275-79362355 45 6.97e-04 GGACCCACCC AAGGGCTG GGTCTGGGAG chr22:20103456-20103536 10 6.97e-04 CGCCAGATC CTGTGCTG GGCCTCCCAA chr20:443236-443316 63 6.97e-04 TTGGCTTCGT CTGCGCTG TAGACTCTAC chr7:157189889-157189969 23 6.97e-04 AGTTGCTAAG CTGCGCTG AGGTGGTAAC chr9:126031166-126031246 72 6.97e-04 CGGAGACGAG CTGCGCTG G chr5:122181498-122181578 25 6.97e-04 GGCCCAGAGG AAGGGCTG CGCCCTTGGC chr22:21810062-21810142 55 6.97e-04 AGGCTAGCCT CTGTGCTG TGGAGACCAG chr3:14167613-14167693 26 7.52e-04 CACCCCTTGA GAGGCCAG GGTGTGCATC chr19:49934764-49934844 17 7.52e-04 ACCGCCCTTC CAGACCTG CTCCAGCCCC chr6:33172841-33172921 17 7.52e-04 TGACGTGTCT GAGGCCAG GGCCGCCAGG chr22:22050572-22050652 52 7.52e-04 ACACTGGGTT GAGGCCAG TGTCTCCTGC chr6:31626910-31626990 48 9.18e-04 AGCCAGCACC AAGGCCTG CAGGAGACCA chr22:20144423-20144503 27 9.18e-04 GTCCCCGTCA CTGCCCTG TGCCCGCCCA chr22:20051023-20051103 73 9.18e-04 TCCAGAGCTT CTGCCCTG chr20:62328684-62328764 66 9.18e-04 AGCTCCAGCT CAGAGCAG TGCCAGC chr10:97416503-97416583 35 9.18e-04 GGGCGAGGGC CTGTCCTG GAGCTGCGGC chr1:76262821-76262901 5 9.18e-04 CCAC CTGTCCTG GCACGTCAGG chr22:19881035-19881115 9 9.18e-04 GCCTGGGA CAGAGCAG TGTCTGGGCG chr22:23039776-23039856 9 9.18e-04 CTTGGGTT CAGGACTG TGGCCCTGGT chr22:20098750-20098830 33 1.02e-03 GGACTGGCAC CTGTGCAG AGTGCCGTGT chr2:97544052-97544132 7 1.02e-03 CTAACA GTGGGCTG GGCGCCATCC chr16:776549-776629 67 1.02e-03 TGCACATACC CTGTGCAG ATGGAA chr5:137802698-137802778 13 1.02e-03 CACCCCTGAG CTGCGCAG TGCCATCCAA chr2:190649028-190649108 50 1.02e-03 AGGCCCGGCG CTGCGCAG CTTGCGGAAG chr2:196521832-196521912 6 1.02e-03 TGCGG CTGCGCAG GGAGCTGAGT chr22:20134838-20134918 9 1.02e-03 GGCTGGGG GTGGGCTG GGCTCTCTGC chr9:139735357-139735437 55 1.10e-03 TTCCGGCCGG GAGCCCTG AACACGGGTG chr1:38274681-38274761 56 1.10e-03 TGGAGCTGCG GAGCCCTG ACCATCCCCG chr22:21311065-21311145 22 1.10e-03 aggatcgctt gagccctg gaggtcgaga chr22:20794398-20794478 16 1.10e-03 CCTGCCCCTG CAGACCAG AGGCCTCCTG chr1:145075611-145075691 68 1.28e-03 TCGGCCGCTG CTGCCCAG CTCCC chr22:23104788-23104868 36 1.28e-03 TCAGTGTCCC CAGGACAG ACAGCCAGGA chr3:167452648-167452728 60 1.28e-03 GTCCGGAATC CTGCCCAG CCGGAGTCGT chr2:232578583-232578663 2 1.28e-03 G GAGCGCAG GGTGCTGGTG chr11:820409-820489 48 1.28e-03 ACGGTGCCCT GTGGCCTG GCTCCCCGCT chrX:136520421-136520501 72 1.28e-03 gagaagtgtc aaggccag g chr22:21805966-21806046 68 1.28e-03 AGGAGGATGG CTGCCCAG TGCCT chr22:20154381-20154461 36 1.28e-03 CAGGCTGAGG CTGTCCAG ACATGGCCTG chr22:21346176-21346256 61 1.28e-03 TACCAGGAGC AAGGCCAG GACACCTGGG chr22:19875074-19875154 46 1.36e-03 CTGTACCATC AAGCGCTG CCTGGAGGAG chr22:22322234-22322314 1 1.36e-03 . GTGGGCAG ATACGCAAGC chr17:56405173-56405253 41 1.36e-03 GCTATGCCAG GTGGGCAG TGCCCATGGC chr22:23420827-23420907 6 1.44e-03 AGGGA ATGGGCTG CAGCCCCAGG chr22:22325613-22325693 15 1.57e-03 AGCCACGGGT GAGAGCTG GGGGTACAGG chr2:232579512-232579592 27 1.57e-03 CAAGGCGACT CAGTACTG CAGTGTTCCC chr11:118965039-11896511 59 1.57e-03 CCGCGTCTGA AAGTCCTG GGCTAAGCAC chr22:21343167-21343247 31 1.57e-03 CCACCTCCGA CAGCACTG AGACCCGGAG chr22:19987862-19987942 63 1.57e-03 CAAGTGCACA AAGTCCTG CCTTTCATAT chr19:10225326-10225406 18 1.57e-03 AGCACTGGCC AAGCCCTG CCCCTCAATG chr6:112408662-112408742 52 1.57e-03 CGCTCTGCTA GAGAGCTG CCGTAAGTCA chr22:19928501-19928581 41 1.57e-03 TGCCTGTGGG GAGAGCTG CTCGCTGTCA chr22:22324786-22324866 6 1.57e-03 GGGGA GTGGCCAG CTGTGACCCA chr13:91080923-91081003 15 1.57e-03 gctgcacaca gtggccag actctccact chr22:20040370-20040450 57 1.71e-03 CGCCACTGAG GTGTGCTG CAGGGGTATG chr11:64053182-64053262 58 1.71e-03 GGGTGCGGCG CTGGACTG CGGAGCCAGC chr22:20099455-20099535 55 1.71e-03 TTTGTAACAG CTGAGCAG CACCCCAGCA chr22:20755758-20755838 73 1.71e-03 agcactgcct gtgtgctg chr9:140473771-140473851 25 1.92e-03 GCGCCCCACT AAGCCCAG CACCCCGAGG chr14:88237704-88237784 49 1.92e-03 GAGGCCCCCA CAGCACAG TGGGTCACCG chr6:31747507-31747587 64 1.92e-03 CCACCCCATT CAGTACAG GTTTCAGGC chr22:21382303-21382383 72 2.07e-03 CAGCCATGAA GAGACCAG T chr22:22032268-22032348 25 2.16e-03 aagggtgtct gtgcccag ctgggagtcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCWG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:10830602-10830682 3.4e-05 13_[+1]_59 chr11:65194892-65194972 3.4e-05 27_[+1]_45 chr22:23269957-23270037 3.4e-05 31_[+1]_41 chr15:34875852-34875932 3.4e-05 40_[+1]_32 chr22:18982581-18982661 3.4e-05 44_[+1]_28 chr22:19958493-19958573 3.4e-05 40_[+1]_32 chr22:22044313-22044393 3.4e-05 27_[+1]_45 chr22:19831534-19831614 3.4e-05 13_[+1]_59 chr22:22316670-22316750 3.4e-05 42_[+1]_30 chr22:19167815-19167895 7e-05 28_[+1]_44 chr21:44255108-44255188 7e-05 30_[+1]_42 chr22:19812236-19812316 7e-05 43_[+1]_29 chr9:139563732-139563812 7e-05 71_[+1]_1 chr22:19863999-19864079 0.0001 70_[+1]_2 chr16:2203012-2203092 0.0001 40_[+1]_32 chr22:22053308-22053388 0.0001 11_[+1]_61 chr22:19505783-19505863 0.00014 62_[+1]_10 chr11:65190488-65190568 0.00014 12_[+1]_60 chr22:23369237-23369317 0.00014 40_[+1]_32 chr19:58983405-58983485 0.00014 8_[+1]_64 chr22:19614837-19614917 0.00014 48_[+1]_24 chr17:79825749-79825829 0.00014 62_[+1]_10 chr7:128524058-128524138 0.0002 14_[+1]_58 chr6:41863174-41863254 0.0002 14_[+1]_58 chr2:149402919-149402999 0.0002 40_[+1]_32 chr11:77532149-77532229 0.0002 64_[+1]_8 chr5:179036438-179036518 0.0002 55_[+1]_17 chr22:22043382-22043462 0.0002 51_[+1]_21 chr17:79223412-79223492 0.00023 58_[+1]_14 chr12:53876455-53876535 0.00023 66_[+1]_6 chr22:23268676-23268756 0.00023 24_[+1]_48 chr4:119200075-119200155 0.00029 42_[+1]_30 chr1:1266887-1266967 0.00029 11_[+1]_61 chr22:22051384-22051464 0.00029 29_[+1]_43 chr22:19739523-19739603 0.00029 11_[+1]_61 chr22:19812453-19812533 0.00029 22_[+1]_50 chr17:79218293-79218373 0.00041 55_[+1]_17 chr16:2203657-2203737 0.00041 70_[+1]_2 chr6:34360469-34360549 0.00041 13_[+1]_59 chr16:1828395-1828475 0.00041 3_[+1]_69 chr4:166248480-166248560 0.00041 3_[+1]_69 chr22:19868521-19868601 0.00041 41_[+1]_31 chr19:8389630-8389710 0.00041 66_[+1]_6 chr1:203241655-203241735 0.00041 45_[+1]_27 chr22:21075423-21075503 0.00041 67_[+1]_5 chr5:134813566-134813646 0.00041 47_[+1]_25 chr13:92245010-92245090 0.00044 23_[+1]_49 chr22:20226157-20226237 0.00054 24_[+1]_48 chr16:68297826-68297906 0.00054 55_[+1]_17 chr22:22415486-22415566 0.00054 48_[+1]_24 chr22:21386318-21386398 0.00054 46_[+1]_26 chr22:22415285-22415365 0.00054 [+1]_72 chr6:34541504-34541584 0.00054 31_[+1]_41 chr22:21009147-21009227 0.00054 8_[+1]_64 chr22:20195417-20195497 0.00062 32_[+1]_40 chr22:20115028-20115108 0.00062 68_[+1]_4 chr16:89632257-89632337 0.00062 41_[+1]_31 chr16:576072-576152 0.00062 13_[+1]_59 chr22:22039292-22039372 0.00062 41_[+1]_31 chr22:20186487-20186567 0.00062 19_[+1]_53 chr22:19503784-19503864 0.00062 49_[+1]_23 chr17:79362275-79362355 0.0007 44_[+1]_28 chr22:20103456-20103536 0.0007 9_[+1]_63 chr20:443236-443316 0.0007 62_[+1]_10 chr7:157189889-157189969 0.0007 22_[+1]_50 chr9:126031166-126031246 0.0007 71_[+1]_1 chr5:122181498-122181578 0.0007 24_[+1]_48 chr22:21810062-21810142 0.0007 54_[+1]_18 chr3:14167613-14167693 0.00075 25_[+1]_47 chr19:49934764-49934844 0.00075 16_[+1]_56 chr6:33172841-33172921 0.00075 16_[+1]_56 chr22:22050572-22050652 0.00075 51_[+1]_21 chr6:31626910-31626990 0.00092 47_[+1]_25 chr22:20144423-20144503 0.00092 26_[+1]_46 chr22:20051023-20051103 0.00092 72_[+1] chr20:62328684-62328764 0.00092 65_[+1]_7 chr10:97416503-97416583 0.00092 34_[+1]_38 chr1:76262821-76262901 0.00092 4_[+1]_68 chr22:19881035-19881115 0.00092 8_[+1]_64 chr22:23039776-23039856 0.00092 8_[+1]_64 chr22:20098750-20098830 0.001 32_[+1]_40 chr2:97544052-97544132 0.001 6_[+1]_66 chr16:776549-776629 0.001 66_[+1]_6 chr5:137802698-137802778 0.001 12_[+1]_60 chr2:190649028-190649108 0.001 49_[+1]_23 chr2:196521832-196521912 0.001 5_[+1]_67 chr22:20134838-20134918 0.001 8_[+1]_64 chr9:139735357-139735437 0.0011 54_[+1]_18 chr1:38274681-38274761 0.0011 55_[+1]_17 chr22:21311065-21311145 0.0011 21_[+1]_51 chr22:20794398-20794478 0.0011 15_[+1]_57 chr1:145075611-145075691 0.0013 67_[+1]_5 chr22:23104788-23104868 0.0013 35_[+1]_37 chr3:167452648-167452728 0.0013 59_[+1]_13 chr2:232578583-232578663 0.0013 1_[+1]_71 chr11:820409-820489 0.0013 47_[+1]_25 chrX:136520421-136520501 0.0013 71_[+1]_1 chr22:21805966-21806046 0.0013 67_[+1]_5 chr22:20154381-20154461 0.0013 35_[+1]_37 chr22:21346176-21346256 0.0013 60_[+1]_12 chr22:19875074-19875154 0.0014 45_[+1]_27 chr22:22322234-22322314 0.0014 [+1]_72 chr17:56405173-56405253 0.0014 40_[+1]_32 chr22:23420827-23420907 0.0014 5_[+1]_67 chr22:22325613-22325693 0.0016 14_[+1]_58 chr2:232579512-232579592 0.0016 26_[+1]_46 chr11:118965039-11896511 0.0016 58_[+1]_14 chr22:21343167-21343247 0.0016 30_[+1]_42 chr22:19987862-19987942 0.0016 62_[+1]_10 chr19:10225326-10225406 0.0016 17_[+1]_55 chr6:112408662-112408742 0.0016 51_[+1]_21 chr22:19928501-19928581 0.0016 40_[+1]_32 chr22:22324786-22324866 0.0016 5_[+1]_67 chr13:91080923-91081003 0.0016 14_[+1]_58 chr22:20040370-20040450 0.0017 56_[+1]_16 chr11:64053182-64053262 0.0017 57_[+1]_15 chr22:20099455-20099535 0.0017 54_[+1]_18 chr22:20755758-20755838 0.0017 72_[+1] chr9:140473771-140473851 0.0019 24_[+1]_48 chr14:88237704-88237784 0.0019 48_[+1]_24 chr6:31747507-31747587 0.0019 63_[+1]_9 chr22:21382303-21382383 0.0021 71_[+1]_1 chr22:22032268-22032348 0.0022 24_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCWG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSSCWG width=8 seqs=123 chr11:10830602-10830682 ( 14) CAGGGCTG 1 chr11:65194892-65194972 ( 28) CAGGGCTG 1 chr22:23269957-23270037 ( 32) CAGGGCTG 1 chr15:34875852-34875932 ( 41) CAGGGCTG 1 chr22:18982581-18982661 ( 45) CAGGGCTG 1 chr22:19958493-19958573 ( 41) CAGGGCTG 1 chr22:22044313-22044393 ( 28) CAGGGCTG 1 chr22:19831534-19831614 ( 14) CAGGGCTG 1 chr22:22316670-22316750 ( 43) CAGGGCTG 1 chr22:19167815-19167895 ( 29) CAGGCCTG 1 chr21:44255108-44255188 ( 31) CAGGCCTG 1 chr22:19812236-19812316 ( 44) CAGGCCTG 1 chr9:139563732-139563812 ( 72) CAGGCCTG 1 chr22:19863999-19864079 ( 71) CAGGGCAG 1 chr16:2203012-2203092 ( 41) CAGGGCAG 1 chr22:22053308-22053388 ( 12) CAGGGCAG 1 chr22:19505783-19505863 ( 63) CAGGCCAG 1 chr11:65190488-65190568 ( 13) CAGGCCAG 1 chr22:23369237-23369317 ( 41) CAGGCCAG 1 chr19:58983405-58983485 ( 9) CAGGCCAG 1 chr22:19614837-19614917 ( 49) CAGGCCAG 1 chr17:79825749-79825829 ( 63) CAGGCCAG 1 chr7:128524058-128524138 ( 15) CAGTGCTG 1 chr6:41863174-41863254 ( 15) CAGCGCTG 1 chr2:149402919-149402999 ( 41) CAGCGCTG 1 chr11:77532149-77532229 ( 65) CAGCGCTG 1 chr5:179036438-179036518 ( 56) CAGCGCTG 1 chr22:22043382-22043462 ( 52) CAGTGCTG 1 chr17:79223412-79223492 ( 59) CTGGGCTG 1 chr12:53876455-53876535 ( 67) CTGGGCTG 1 chr22:23268676-23268756 ( 25) CTGGGCTG 1 chr4:119200075-119200155 ( 43) CAGCCCTG 1 chr1:1266887-1266967 ( 12) CAGCCCTG 1 chr22:22051384-22051464 ( 30) CAGCCCTG 1 chr22:19739523-19739603 ( 12) CAGCCCTG 1 chr22:19812453-19812533 ( 23) CAGCCCTG 1 chr17:79218293-79218373 ( 56) GAGGGCTG 1 chr16:2203657-2203737 ( 71) GAGGGCTG 1 chr6:34360469-34360549 ( 14) CAGCGCAG 1 chr16:1828395-1828475 ( 4) CAGTGCAG 1 chr4:166248480-166248560 ( 4) CAGCGCAG 1 chr22:19868521-19868601 ( 42) GAGGGCTG 1 chr19:8389630-8389710 ( 67) GAGGGCTG 1 chr1:203241655-203241735 ( 46) CTGGCCTG 1 chr22:21075423-21075503 ( 68) CAGTGCAG 1 chr5:134813566-134813646 ( 48) CTGGCCTG 1 chr13:92245010-92245090 ( 24) CTGGGCAG 1 chr22:20226157-20226237 ( 25) CAGCCCAG 1 chr16:68297826-68297906 ( 56) GAGGCCTG 1 chr22:22415486-22415566 ( 49) CAGTCCAG 1 chr22:21386318-21386398 ( 47) GAGGCCTG 1 chr22:22415285-22415365 ( 1) CAGTCCAG 1 chr6:34541504-34541584 ( 32) GAGGCCTG 1 chr22:21009147-21009227 ( 9) CAGCCCAG 1 chr22:20195417-20195497 ( 33) CTGGCCAG 1 chr22:20115028-20115108 ( 69) CTGGCCAG 1 chr16:89632257-89632337 ( 42) GAGGGCAG 1 chr16:576072-576152 ( 14) CTGGCCAG 1 chr22:22039292-22039372 ( 42) CAGAGCTG 1 chr22:20186487-20186567 ( 20) GAGGGCAG 1 chr22:19503784-19503864 ( 50) GAGGGCAG 1 chr17:79362275-79362355 ( 45) AAGGGCTG 1 chr22:20103456-20103536 ( 10) CTGTGCTG 1 chr20:443236-443316 ( 63) CTGCGCTG 1 chr7:157189889-157189969 ( 23) CTGCGCTG 1 chr9:126031166-126031246 ( 72) CTGCGCTG 1 chr5:122181498-122181578 ( 25) AAGGGCTG 1 chr22:21810062-21810142 ( 55) CTGTGCTG 1 chr3:14167613-14167693 ( 26) GAGGCCAG 1 chr19:49934764-49934844 ( 17) CAGACCTG 1 chr6:33172841-33172921 ( 17) GAGGCCAG 1 chr22:22050572-22050652 ( 52) GAGGCCAG 1 chr6:31626910-31626990 ( 48) AAGGCCTG 1 chr22:20144423-20144503 ( 27) CTGCCCTG 1 chr22:20051023-20051103 ( 73) CTGCCCTG 1 chr20:62328684-62328764 ( 66) CAGAGCAG 1 chr10:97416503-97416583 ( 35) CTGTCCTG 1 chr1:76262821-76262901 ( 5) CTGTCCTG 1 chr22:19881035-19881115 ( 9) CAGAGCAG 1 chr22:23039776-23039856 ( 9) CAGGACTG 1 chr22:20098750-20098830 ( 33) CTGTGCAG 1 chr2:97544052-97544132 ( 7) GTGGGCTG 1 chr16:776549-776629 ( 67) CTGTGCAG 1 chr5:137802698-137802778 ( 13) CTGCGCAG 1 chr2:190649028-190649108 ( 50) CTGCGCAG 1 chr2:196521832-196521912 ( 6) CTGCGCAG 1 chr22:20134838-20134918 ( 9) GTGGGCTG 1 chr9:139735357-139735437 ( 55) GAGCCCTG 1 chr1:38274681-38274761 ( 56) GAGCCCTG 1 chr22:21311065-21311145 ( 22) GAGCCCTG 1 chr22:20794398-20794478 ( 16) CAGACCAG 1 chr1:145075611-145075691 ( 68) CTGCCCAG 1 chr22:23104788-23104868 ( 36) CAGGACAG 1 chr3:167452648-167452728 ( 60) CTGCCCAG 1 chr2:232578583-232578663 ( 2) GAGCGCAG 1 chr11:820409-820489 ( 48) GTGGCCTG 1 chrX:136520421-136520501 ( 72) AAGGCCAG 1 chr22:21805966-21806046 ( 68) CTGCCCAG 1 chr22:20154381-20154461 ( 36) CTGTCCAG 1 chr22:21346176-21346256 ( 61) AAGGCCAG 1 chr22:19875074-19875154 ( 46) AAGCGCTG 1 chr22:22322234-22322314 ( 1) GTGGGCAG 1 chr17:56405173-56405253 ( 41) GTGGGCAG 1 chr22:23420827-23420907 ( 6) ATGGGCTG 1 chr22:22325613-22325693 ( 15) GAGAGCTG 1 chr2:232579512-232579592 ( 27) CAGTACTG 1 chr11:118965039-11896511 ( 59) AAGTCCTG 1 chr22:21343167-21343247 ( 31) CAGCACTG 1 chr22:19987862-19987942 ( 63) AAGTCCTG 1 chr19:10225326-10225406 ( 18) AAGCCCTG 1 chr6:112408662-112408742 ( 52) GAGAGCTG 1 chr22:19928501-19928581 ( 41) GAGAGCTG 1 chr22:22324786-22324866 ( 6) GTGGCCAG 1 chr13:91080923-91081003 ( 15) GTGGCCAG 1 chr22:20040370-20040450 ( 57) GTGTGCTG 1 chr11:64053182-64053262 ( 58) CTGGACTG 1 chr22:20099455-20099535 ( 55) CTGAGCAG 1 chr22:20755758-20755838 ( 73) GTGTGCTG 1 chr9:140473771-140473851 ( 25) AAGCCCAG 1 chr14:88237704-88237784 ( 49) CAGCACAG 1 chr6:31747507-31747587 ( 64) CAGTACAG 1 chr22:21382303-21382383 ( 72) GAGACCAG 1 chr22:22032268-22032348 ( 25) GTGCCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCWG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.50202 E= 1.9e-008 -98 99 -33 -1359 193 -1359 -1359 89 -1359 -1359 166 -1359 -112 -26 62 -18 -164 43 65 -1359 -1359 159 -1359 -1359 128 -1359 -1359 170 -1359 -1359 166 -1359 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCWG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 123 E= 1.9e-008 0.089431 0.658537 0.252033 0.000000 0.674797 0.000000 0.000000 0.325203 0.000000 0.000000 1.000000 0.000000 0.081301 0.276423 0.487805 0.154472 0.056911 0.447154 0.495935 0.000000 0.000000 1.000000 0.000000 0.000000 0.430894 0.000000 0.000000 0.569106 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCWG MEME-1 regular expression -------------------------------------------------------------------------------- [CG][AT]G[GC][GC]C[TA]G -------------------------------------------------------------------------------- Time 4.87 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGAGAA MEME-2 width = 8 sites = 4 llr = 49 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGAGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a:aa pos.-specific C :::::::: probability G ::aa:a:: matrix T aa:::::: bits 2.5 ** * ** 2.3 ** * ** 2.0 ** * ** 1.8 ******** Relative 1.5 ******** Entropy 1.3 ******** (17.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGGAGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGAGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:20144423-20144503 71 5.41e-06 AGGCTGCCCA TTGGAGAA GG chr7:35840702-35840782 63 5.41e-06 GTAGGCGCCT TTGGAGAA TCGGCGGGCT chr14:95623810-95623890 42 5.41e-06 GCACAGCCGC TTGGAGAA TCCCACTGGC chr22:19675173-19675253 26 5.41e-06 GGCCTCCTCC TTGGAGAA CCCCACAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGAGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:20144423-20144503 5.4e-06 70_[+2]_2 chr7:35840702-35840782 5.4e-06 62_[+2]_10 chr14:95623810-95623890 5.4e-06 41_[+2]_31 chr22:19675173-19675253 5.4e-06 25_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGAGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGAGAA width=8 seqs=4 chr22:20144423-20144503 ( 71) TTGGAGAA 1 chr7:35840702-35840782 ( 63) TTGGAGAA 1 chr14:95623810-95623890 ( 42) TTGGAGAA 1 chr22:19675173-19675253 ( 26) TTGGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGAGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.4e+004 -865 -865 -865 251 -865 -865 -865 251 -865 -865 166 -865 -865 -865 166 -865 250 -865 -865 -865 -865 -865 166 -865 250 -865 -865 -865 250 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGAGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGAGAA MEME-2 regular expression -------------------------------------------------------------------------------- TTGGAGAA -------------------------------------------------------------------------------- Time 8.38 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTTGAG MEME-3 width = 8 sites = 2 llr = 25 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTTGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:::::a: pos.-specific C :::::::: probability G :::::a:a matrix T :aaaa::: bits 2.5 ***** * 2.3 ***** * 2.0 ***** * 1.8 ******** Relative 1.5 ******** Entropy 1.3 ******** (18.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ATTTTGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:62501642-62501722 26 2.95e-06 CGACGCTGCC ATTTTGAG CTCCTCCGCC chr6:74230103-74230183 12 2.95e-06 CGCGTCCTCC ATTTTGAG CTCCCTGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:62501642-62501722 3e-06 25_[+3]_47 chr6:74230103-74230183 3e-06 11_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTTGAG width=8 seqs=2 chr17:62501642-62501722 ( 26) ATTTTGAG 1 chr6:74230103-74230183 ( 12) ATTTTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.4e+004 249 -765 -765 -765 -765 -765 -765 251 -765 -765 -765 251 -765 -765 -765 251 -765 -765 -765 251 -765 -765 165 -765 249 -765 -765 -765 -765 -765 165 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTGAG MEME-3 regular expression -------------------------------------------------------------------------------- ATTTTGAG -------------------------------------------------------------------------------- Time 11.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGGGAR MEME-4 width = 8 sites = 10 llr = 100 E-value = 3.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGGGAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:::::a5 pos.-specific C :a:::::: probability G :::aaa:5 matrix T 8:a::::: bits 2.5 * * 2.3 * * 2.0 * * 1.8 * ***** Relative 1.5 ******* Entropy 1.3 ******* (14.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCTGGGAA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:89632257-89632337 1 1.01e-05 . TCTGGGAA CACCTTGATT chr3:119813388-119813468 36 1.01e-05 GTAACAGGCG TCTGGGAA TCGCCGGCCG chr22:21805966-21806046 1 1.01e-05 . TCTGGGAA GCAGCGATGT chr11:65190488-65190568 57 2.82e-05 GAACTTGACC TCTGGGAG GGCGCCGCTC chr17:79362275-79362355 55 2.82e-05 AAGGGCTGGG TCTGGGAG GTGCTTGGGG chr3:146262334-146262414 58 2.82e-05 CGGAAAAGGG TCTGGGAG TAACCTTTGC chr22:21018494-21018574 13 2.82e-05 tctagaggtg tctgggag ctcctgcctg chr22:19614837-19614917 69 2.82e-05 TCACCCTGTC TCTGGGAG AAGG chr4:166248480-166248560 18 3.85e-05 GCAGGCTCTC ACTGGGAA TCTGCCGGGA chr16:576072-576152 50 3.85e-05 CCAGGGAAGG ACTGGGAA GGGAAGAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89632257-89632337 1e-05 [+4]_72 chr3:119813388-119813468 1e-05 35_[+4]_37 chr22:21805966-21806046 1e-05 [+4]_72 chr11:65190488-65190568 2.8e-05 56_[+4]_16 chr17:79362275-79362355 2.8e-05 54_[+4]_18 chr3:146262334-146262414 2.8e-05 57_[+4]_15 chr22:21018494-21018574 2.8e-05 12_[+4]_60 chr22:19614837-19614917 2.8e-05 68_[+4]_4 chr4:166248480-166248560 3.8e-05 17_[+4]_55 chr16:576072-576152 3.8e-05 49_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGGGAR width=8 seqs=10 chr16:89632257-89632337 ( 1) TCTGGGAA 1 chr3:119813388-119813468 ( 36) TCTGGGAA 1 chr22:21805966-21806046 ( 1) TCTGGGAA 1 chr11:65190488-65190568 ( 57) TCTGGGAG 1 chr17:79362275-79362355 ( 55) TCTGGGAG 1 chr3:146262334-146262414 ( 58) TCTGGGAG 1 chr22:21018494-21018574 ( 13) TCTGGGAG 1 chr22:19614837-19614917 ( 69) TCTGGGAG 1 chr4:166248480-166248560 ( 18) ACTGGGAA 1 chr16:576072-576152 ( 50) ACTGGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 3.8e+004 18 -997 -997 219 -997 159 -997 -997 -997 -997 -997 251 -997 -997 166 -997 -997 -997 166 -997 -997 -997 166 -997 250 -997 -997 -997 150 -997 66 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.8e+004 0.200000 0.000000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGGAR MEME-4 regular expression -------------------------------------------------------------------------------- [TA]CTGGGA[AG] -------------------------------------------------------------------------------- Time 15.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGGTAA MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGGTAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C :::::::: probability G :::aa::: matrix T aaa::a:: bits 2.5 *** *** 2.3 *** *** 2.0 *** *** 1.8 ******** Relative 1.5 ******** Entropy 1.3 ******** (18.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTTGGTAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGTAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:21341841-21341921 28 2.95e-06 CATGTTTGTC TTTGGTAA GCAGCCTCTT chr22:19058537-19058617 25 2.95e-06 AGGGCCAGCC TTTGGTAA GCTGGGGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGTAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:21341841-21341921 3e-06 27_[+5]_45 chr22:19058537-19058617 3e-06 24_[+5]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGTAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGGTAA width=8 seqs=2 chr22:21341841-21341921 ( 28) TTTGGTAA 1 chr22:19058537-19058617 ( 25) TTTGGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGTAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.4e+004 -765 -765 -765 251 -765 -765 -765 251 -765 -765 -765 251 -765 -765 165 -765 -765 -765 165 -765 -765 -765 -765 251 249 -765 -765 -765 249 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGTAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGTAA MEME-5 regular expression -------------------------------------------------------------------------------- TTTGGTAA -------------------------------------------------------------------------------- Time 18.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:91080923-91081003 9.05e-01 80 chr22:20794398-20794478 4.25e-01 80 chr22:21346176-21346256 3.71e-01 80 chr22:20800835-20800915 3.39e-01 80 chr22:22316670-22316750 7.03e-03 42_[+1(3.43e-05)]_30 chr6:31747507-31747587 4.12e-01 80 chr4:114900744-114900824 2.48e-01 80 chr22:21311065-21311145 2.51e-01 80 chr22:19831534-19831614 1.27e-01 13_[+1(3.43e-05)]_59 chr17:79825749-79825829 1.57e-02 80 chr22:19872618-19872698 9.80e-01 80 chr3:149687941-149688021 1.18e-01 23_[+2(4.04e-05)]_49 chr7:150807337-150807417 3.54e-01 80 chr4:1810791-1810871 9.38e-01 80 chr5:134813566-134813646 9.31e-03 80 chr22:21382303-21382383 8.87e-02 80 chr22:20154381-20154461 7.09e-01 80 chr22:21075423-21075503 1.85e-01 80 chr22:19503784-19503864 1.90e-03 80 chr22:22082191-22082271 5.04e-01 80 chr22:19058537-19058617 5.94e-03 24_[+5(2.95e-06)]_48 chr22:19806648-19806728 8.52e-01 80 chr22:22043382-22043462 3.88e-02 80 chr22:19164241-19164321 8.30e-01 80 chr22:23039776-23039856 6.83e-01 80 chr22:21810062-21810142 2.48e-01 80 chr22:20929260-20929340 4.18e-01 80 chr22:21009147-21009227 5.75e-01 80 chr22:20186487-20186567 5.15e-01 80 chr22:22037929-22038009 1.75e-02 80 chr22:22050572-22050652 2.40e-03 26_[+3(9.88e-05)]_46 chr7:150710145-150710225 3.42e-02 80 chr22:22039292-22039372 1.94e-01 80 chr22:19026835-19026915 2.05e-01 80 chr22:20228569-20228649 6.83e-01 80 chr22:19881035-19881115 2.38e-01 80 chr22:21805966-21806046 1.43e-03 [+4(1.01e-05)]_72 chr1:38274681-38274761 3.28e-01 80 chr22:19675173-19675253 7.60e-03 25_[+2(5.41e-06)]_47 chr22:22080716-22080796 8.58e-01 80 chr22:23403035-23403115 7.96e-01 80 chr1:27057845-27057925 9.98e-01 80 chr22:20755758-20755838 2.42e-01 80 chr22:22314706-22314786 6.85e-01 80 chr1:16959625-16959705 2.86e-01 80 chr22:22053308-22053388 2.06e-02 80 chr7:99751604-99751684 6.03e-02 80 chr22:22324786-22324866 2.56e-01 80 chr22:19836201-19836281 9.51e-01 80 chr22:19240851-19240931 9.21e-01 80 chr3:119813388-119813468 1.89e-02 35_[+4(1.01e-05)]_37 chr22:23254151-23254231 9.54e-01 80 chr6:34541504-34541584 6.27e-02 80 chr5:179036438-179036518 3.70e-01 80 chr22:20134838-20134918 5.05e-01 80 chr22:19812453-19812533 3.25e-03 80 chr17:7145741-7145821 3.35e-01 80 chr13:92245010-92245090 3.86e-01 80 chr22:23420827-23420907 8.57e-02 80 chr9:103361125-103361205 2.95e-01 80 chr15:44740316-44740396 1.16e-01 80 chr9:139617878-139617958 7.09e-01 80 chr22:19614837-19614917 2.26e-04 68_[+4(2.82e-05)]_4 chr5:56111267-56111347 7.70e-01 80 chr5:122181498-122181578 2.67e-01 80 chr22:20201721-20201801 8.38e-01 80 chr16:576072-576152 2.73e-02 49_[+4(3.85e-05)]_23 chr9:126031166-126031246 7.00e-01 80 chr22:19928501-19928581 5.29e-01 80 chr22:21458113-21458193 1.15e-01 80 chr16:88780772-88780852 6.82e-01 80 chr1:76262821-76262901 7.18e-01 80 chr19:10226259-10226339 5.95e-01 80 chr22:22044313-22044393 4.28e-02 27_[+1(3.43e-05)]_45 chr22:19739523-19739603 3.93e-01 80 chr17:79857776-79857856 9.12e-01 80 chr1:203241655-203241735 4.62e-01 80 chr11:118963899-11896397 5.71e-01 80 chr22:22051384-22051464 7.27e-02 80 chr21:11143826-11143906 4.61e-01 80 chr19:5692490-5692570 5.03e-01 80 chr9:139563732-139563812 3.99e-02 71_[+1(7.01e-05)]_1 chr17:56405173-56405253 6.60e-01 80 chr22:23268676-23268756 1.09e-01 80 chr19:8389630-8389710 6.09e-01 80 chr22:19812236-19812316 2.43e-01 43_[+1(7.01e-05)]_29 chr9:139569022-139569102 6.57e-01 80 chr16:89632257-89632337 1.56e-03 [+4(1.01e-05)]_72 chr22:19882898-19882978 9.98e-01 80 chr22:19599272-19599352 8.65e-01 80 chr10:97416503-97416583 1.40e-01 80 chr20:62328684-62328764 5.37e-01 80 chr11:72533279-72533359 9.24e-01 80 chr8:21777029-21777109 9.14e-01 80 chr6:112408662-112408742 3.94e-01 80 chr22:20099455-20099535 1.34e-01 80 chr7:157520733-157520813 8.86e-02 80 chr19:10225326-10225406 7.16e-01 80 chr22:23269756-23269836 8.94e-01 80 chr11:77532149-77532229 2.13e-02 80 chr22:22032268-22032348 1.89e-01 80 chr5:133863002-133863082 4.39e-01 80 chr22:22277027-22277107 5.56e-01 80 chr22:19987862-19987942 2.32e-01 80 chr22:21343167-21343247 2.75e-01 80 chr2:149402919-149402999 1.71e-01 80 chr22:23427048-23427128 9.40e-02 80 chr22:19114549-19114629 4.16e-01 80 chr22:20101407-20101487 9.60e-01 80 chr22:22322234-22322314 5.33e-01 80 chrX:136520421-136520501 8.39e-02 80 chr14:95623810-95623890 1.08e-02 41_[+2(5.41e-06)]_31 chr6:41863174-41863254 4.17e-01 80 chr11:61447785-61447865 3.92e-01 80 chr22:20115028-20115108 2.58e-01 80 chr12:30908069-30908149 6.85e-01 80 chr16:2014395-2014475 9.99e-01 80 chr7:157189889-157189969 3.21e-03 80 chr2:196521832-196521912 3.49e-01 80 chr16:88876201-88876281 8.62e-01 80 chr5:81570311-81570391 8.72e-01 80 chr11:820409-820489 6.63e-01 80 chr11:64053182-64053262 5.72e-01 80 chr14:88237704-88237784 4.61e-01 80 chr22:19958493-19958573 1.48e-02 40_[+1(3.43e-05)]_32 chr19:58983405-58983485 3.00e-01 80 chr1:85039974-85040054 9.85e-01 80 chr11:118965039-11896511 3.94e-01 80 chr20:443236-443316 2.80e-01 80 chr19:54713327-54713407 8.44e-01 80 chr22:18982581-18982661 1.32e-01 44_[+1(3.43e-05)]_28 chr6:74230103-74230183 8.66e-03 11_[+3(2.95e-06)]_61 chr17:27052822-27052902 9.29e-01 80 chr22:38902432-38902512 1.04e-01 25_[+3(9.88e-05)]_47 chr22:19868521-19868601 2.37e-01 80 chr22:20040370-20040450 9.00e-01 80 chr15:34875852-34875932 1.63e-01 40_[+1(3.43e-05)]_32 chr3:167452405-167452485 6.27e-01 80 chr22:21805353-21805433 4.03e-01 80 chr21:45278964-45279044 5.41e-02 80 chr22:23269957-23270037 2.73e-02 31_[+1(3.43e-05)]_41 chr22:22415285-22415365 1.23e-01 80 chr6:119558577-119558657 1.99e-02 80 chr22:20310244-20310324 8.07e-02 80 chr2:190649028-190649108 1.62e-01 80 chr8:82754690-82754770 9.94e-01 80 chr4:166248480-166248560 2.04e-02 17_[+4(3.85e-05)]_55 chr22:19875074-19875154 3.21e-01 80 chr21:44255108-44255188 2.37e-02 30_[+1(7.01e-05)]_42 chr21:46495112-46495192 2.59e-01 80 chr1:28837191-28837271 6.97e-01 80 chr9:130829566-130829646 9.25e-01 80 chr22:20100603-20100683 7.87e-01 80 chr6:27101657-27101737 7.86e-01 80 chr22:21341841-21341921 1.17e-03 27_[+5(2.95e-06)]_45 chr2:232579512-232579592 8.36e-01 80 chr5:137802698-137802778 4.03e-01 80 chr22:19024374-19024454 8.19e-01 80 chr7:35840702-35840782 1.75e-03 62_[+2(5.41e-06)]_10 chr16:53738006-53738086 4.70e-01 80 chr16:2203012-2203092 2.45e-02 80 chr9:139735357-139735437 2.88e-01 80 chr16:776549-776629 5.53e-02 80 chr22:38902638-38902718 7.08e-03 50_[+2(4.04e-05)]_22 chr22:20051023-20051103 5.70e-01 80 chr16:1828395-1828475 6.49e-01 80 chr12:7053640-7053720 7.34e-01 80 chr22:22325613-22325693 3.55e-01 80 chr22:21457284-21457364 8.46e-01 80 chr2:97544052-97544132 2.47e-01 80 chr22:19745456-19745536 9.14e-01 80 chr22:22313518-22313598 9.37e-01 80 chr22:21386318-21386398 4.01e-01 80 chr2:216973929-216974009 8.15e-01 80 chr1:149859281-149859361 9.08e-01 80 chr21:45225970-45226050 5.97e-01 80 chr22:20165769-20165849 4.32e-01 80 chr12:53876455-53876535 6.02e-02 80 chr16:88936120-88936200 5.00e-01 80 chr13:91816705-91816785 6.55e-01 80 chr16:30671469-30671549 1.21e-01 80 chr11:65194892-65194972 1.57e-01 27_[+1(3.43e-05)]_45 chr17:72208605-72208685 9.85e-01 80 chr22:22552565-22552645 1.11e-01 80 chr17:56085029-56085109 7.95e-01 80 chr1:213032231-213032311 9.06e-01 80 chr22:19959925-19960005 6.49e-01 80 chr22:20103456-20103536 5.59e-01 80 chr22:19712836-19712916 7.09e-01 80 chr6:34360469-34360549 5.14e-02 80 chr22:19055662-19055742 7.30e-01 80 chr22:20195417-20195497 3.60e-01 80 chr2:232578583-232578663 4.03e-01 80 chr22:20098750-20098830 3.27e-01 80 chr22:20144423-20144503 2.86e-03 70_[+2(5.41e-06)]_2 chr17:61850910-61850990 8.40e-01 80 chr2:133015203-133015283 4.02e-01 80 chr11:10830602-10830682 2.53e-02 13_[+1(3.43e-05)]_59 chr7:26240442-26240522 1.00e+00 80 chr9:140473771-140473851 5.27e-01 80 chr21:46494078-46494158 6.18e-01 80 chr6:33172841-33172921 3.87e-01 80 chr16:88595545-88595625 6.78e-01 80 chr20:44600589-44600669 4.57e-01 80 chr12:125398683-12539876 9.59e-01 80 chr22:19863999-19864079 1.14e-01 80 chr22:19167815-19167895 3.67e-01 28_[+1(7.01e-05)]_44 chr17:79223412-79223492 1.09e-01 80 chr2:232574245-232574325 8.99e-01 80 chr1:27561023-27561103 8.03e-02 80 chr7:128045156-128045236 9.37e-01 80 chr21:44500018-44500098 2.07e-01 80 chr1:16940143-16940223 6.02e-01 80 chr6:31626910-31626990 5.65e-01 80 chr6:44223011-44223091 8.30e-01 80 chr19:13266471-13266551 9.87e-01 80 chr1:1266887-1266967 3.06e-01 80 chr16:2203657-2203737 1.41e-01 80 chr17:62501642-62501722 3.26e-02 25_[+3(2.95e-06)]_47 chr18:4510853-4510933 9.97e-01 80 chr22:21018494-21018574 8.78e-02 12_[+4(2.82e-05)]_60 chr4:119200075-119200155 4.47e-01 80 chr3:167452648-167452728 8.29e-01 80 chr19:12903543-12903623 9.73e-01 80 chr22:23104788-23104868 1.93e-01 80 chr3:146262334-146262414 2.42e-02 57_[+4(2.82e-05)]_15 chr19:49934764-49934844 2.48e-01 80 chr22:22415486-22415566 4.93e-01 80 chr17:79218293-79218373 2.73e-01 80 chr1:27816746-27816826 3.29e-01 80 chr7:128524058-128524138 1.84e-01 80 chr22:19629729-19629809 8.58e-01 80 chr16:68297826-68297906 1.97e-02 80 chr3:14167613-14167693 3.02e-01 80 chr22:21321852-21321932 4.32e-01 80 chr6:34203712-34203792 3.51e-02 52_[+5(1.57e-05)]_20 chr17:79362275-79362355 6.92e-03 54_[+4(2.82e-05)]_18 chr17:56405908-56405988 9.37e-01 80 chr22:23369237-23369317 2.66e-03 80 chr7:26240641-26240721 1.86e-01 80 chr11:65190488-65190568 4.79e-03 56_[+4(2.82e-05)]_16 chr17:56409537-56409617 6.23e-01 80 chr1:145075611-145075691 8.78e-01 80 chr22:19505783-19505863 1.77e-01 80 chr1:173836732-173836812 5.34e-01 80 chr17:56406852-56406932 4.82e-02 80 chr13:91079772-91079852 9.39e-01 80 chr22:20226157-20226237 3.78e-01 80 chr6:26056272-26056352 2.71e-01 80 chr6:26027289-26027369 2.03e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************