******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:53185-53265 1.0000 80 chr10:105127707-10512778 1.0000 80 chr7:25894907-25894987 1.0000 80 chr1:23495278-23495358 1.0000 80 chr1:222791445-222791525 1.0000 80 chr11:119187770-11918785 1.0000 80 chr11:129939745-12993982 1.0000 80 chr15:93425973-93426053 1.0000 80 chr16:8962814-8962894 1.0000 80 chr6:161695217-161695297 1.0000 80 chr1:167906787-167906867 1.0000 80 chr19:1021083-1021163 1.0000 80 chr3:69129468-69129548 1.0000 80 chrX:73072504-73072584 1.0000 80 chr4:95373046-95373126 1.0000 80 chr6:41041586-41041666 1.0000 80 chr20:44601253-44601333 1.0000 80 chr14:61201443-61201523 1.0000 80 chr8:41909477-41909557 1.0000 80 chr11:64864090-64864170 1.0000 80 chrX:123096918-123096998 1.0000 80 chr5:170921708-170921788 1.0000 80 chrX:102470046-102470126 1.0000 80 chr6:70506709-70506789 1.0000 80 chr17:5185550-5185630 1.0000 80 chr10:74451862-74451942 1.0000 80 chr21:47744307-47744387 1.0000 80 chr10:11936658-11936738 1.0000 80 chr19:1174219-1174299 1.0000 80 chr16:14726551-14726631 1.0000 80 chr19:56135856-56135936 1.0000 80 chr3:39195034-39195114 1.0000 80 chr11:118661945-11866202 1.0000 80 chr6:31789979-31790059 1.0000 80 chr1:161129271-161129351 1.0000 80 chr6:37137914-37137994 1.0000 80 chr5:60628035-60628115 1.0000 80 chr10:89623321-89623401 1.0000 80 chr5:122847919-122847999 1.0000 80 chr22:39795781-39795861 1.0000 80 chr16:47495232-47495312 1.0000 80 chr2:197036240-197036320 1.0000 80 chr1:113247927-113248007 1.0000 80 chr14:62162189-62162269 1.0000 80 chr7:101505731-101505811 1.0000 80 chr7:43909047-43909127 1.0000 80 chr1:100503632-100503712 1.0000 80 chr3:180630444-180630524 1.0000 80 chr2:86426576-86426656 1.0000 80 chr4:2010628-2010708 1.0000 80 chr12:123849337-12384941 1.0000 80 chr9:72374832-72374912 1.0000 80 chr1:39491986-39492066 1.0000 80 chr11:107328481-10732856 1.0000 80 chr2:128459069-128459149 1.0000 80 chr5:114880373-114880453 1.0000 80 chr1:43424501-43424581 1.0000 80 chr15:72529850-72529930 1.0000 80 chr19:16738979-16739059 1.0000 80 chr1:159895231-159895311 1.0000 80 chr2:157190424-157190504 1.0000 80 chr2:174829574-174829654 1.0000 80 chr3:52312586-52312666 1.0000 80 chr3:9439089-9439169 1.0000 80 chr9:32552330-32552410 1.0000 80 chr16:3070328-3070408 1.0000 80 chr1:32801797-32801877 1.0000 80 chr15:69110570-69110650 1.0000 80 chr11:67007466-67007546 1.0000 80 chr9:100818987-100819067 1.0000 80 chr12:120755319-12075539 1.0000 80 chr12:117628212-11762829 1.0000 80 chr6:42713752-42713832 1.0000 80 chr1:100715318-100715398 1.0000 80 chr9:139702368-139702448 1.0000 80 chr16:2955367-2955447 1.0000 80 chr2:67624432-67624512 1.0000 80 chr1:8938051-8938131 1.0000 80 chr6:43445307-43445387 1.0000 80 chr11:62648335-62648415 1.0000 80 chr16:15982381-15982461 1.0000 80 chr22:38006036-38006116 1.0000 80 chr10:52178168-52178248 1.0000 80 chr10:120938239-12093831 1.0000 80 chr5:126113943-126114023 1.0000 80 chr20:33543521-33543601 1.0000 80 chr12:111180659-11118073 1.0000 80 chr7:134896206-134896286 1.0000 80 chr3:186288035-186288115 1.0000 80 chr1:68150862-68150942 1.0000 80 chr17:77813209-77813289 1.0000 80 chr10:6622432-6622512 1.0000 80 chr5:138609782-138609862 1.0000 80 chr1:150337139-150337219 1.0000 80 chr20:39657461-39657541 1.0000 80 chr14:23540725-23540805 1.0000 80 chr19:59055822-59055902 1.0000 80 chr2:192542809-192542889 1.0000 80 chr9:139305070-139305150 1.0000 80 chr12:118810970-11881105 1.0000 80 chr17:37026273-37026353 1.0000 80 chr2:208890250-208890330 1.0000 80 chr7:39989054-39989134 1.0000 80 chr10:103578157-10357823 1.0000 80 chr3:169684566-169684646 1.0000 80 chrX:71496994-71497074 1.0000 80 chr22:40573890-40573970 1.0000 80 chr6:31704240-31704320 1.0000 80 chr20:49126903-49126983 1.0000 80 chr19:5978055-5978135 1.0000 80 chr2:70121055-70121135 1.0000 80 chr15:93443569-93443649 1.0000 80 chr1:118148633-118148713 1.0000 80 chr17:37607452-37607532 1.0000 80 chr1:160254852-160254932 1.0000 80 chr5:27217801-27217881 1.0000 80 chr6:30923412-30923492 1.0000 80 chr5:137090013-137090093 1.0000 80 chr17:42767087-42767167 1.0000 80 chr10:72163881-72163961 1.0000 80 chr12:109125245-10912532 1.0000 80 chr5:170814484-170814564 1.0000 80 chr5:177557993-177558073 1.0000 80 chr2:27851904-27851984 1.0000 80 chr8:103876362-103876442 1.0000 80 chr16:9185471-9185551 1.0000 80 chr12:95397432-95397512 1.0000 80 chr17:40021585-40021665 1.0000 80 chr2:111878450-111878530 1.0000 80 chr6:42185550-42185630 1.0000 80 chr12:12420286-12420366 1.0000 80 chr1:76251929-76252009 1.0000 80 chrX:134654552-134654632 1.0000 80 chr2:39348137-39348217 1.0000 80 chr9:132816191-132816271 1.0000 80 chr4:127877222-127877302 1.0000 80 chr16:68119296-68119376 1.0000 80 chr1:77685081-77685161 1.0000 80 chr7:74489603-74489683 1.0000 80 chr15:59949654-59949734 1.0000 80 chr5:90676929-90677009 1.0000 80 chr11:82868167-82868247 1.0000 80 chr8:101734284-101734364 1.0000 80 chr18:53257053-53257133 1.0000 80 chr2:98262496-98262576 1.0000 80 chr16:89556937-89557017 1.0000 80 chr2:217363545-217363625 1.0000 80 chr19:8509841-8509921 1.0000 80 chr5:90679099-90679179 1.0000 80 chr7:129074236-129074316 1.0000 80 chr7:22862425-22862505 1.0000 80 chr20:49575012-49575092 1.0000 80 chr6:43543876-43543956 1.0000 80 chr11:62414019-62414099 1.0000 80 chr11:63953628-63953708 1.0000 80 chr1:162467592-162467672 1.0000 80 chr15:91446504-91446584 1.0000 80 chr10:5488540-5488620 1.0000 80 chr15:44829334-44829414 1.0000 80 chr12:49075975-49076055 1.0000 80 chr16:69599797-69599877 1.0000 80 chr11:76155653-76155733 1.0000 80 chr2:27805845-27805925 1.0000 80 chr5:173315318-173315398 1.0000 80 chr11:31531328-31531408 1.0000 80 chr8:97247708-97247788 1.0000 80 chr4:57333761-57333841 1.0000 80 chr17:62502362-62502442 1.0000 80 chr9:74980095-74980175 1.0000 80 chrX:24043354-24043434 1.0000 80 chr11:77531726-77531806 1.0000 80 chr1:59165668-59165748 1.0000 80 chr10:28966379-28966459 1.0000 80 chr4:122618080-122618160 1.0000 80 chrX:39957142-39957222 1.0000 80 chr1:161284143-161284223 1.0000 80 chr8:145688206-145688286 1.0000 80 chr3:53916102-53916182 1.0000 80 chr15:69745119-69745199 1.0000 80 chr3:5021130-5021210 1.0000 80 chr6:43655470-43655550 1.0000 80 chr15:52311408-52311488 1.0000 80 chr7:127032715-127032795 1.0000 80 chr20:1447447-1447527 1.0000 80 chr12:95867879-95867959 1.0000 80 chr2:26101309-26101389 1.0000 80 chr17:33895095-33895175 1.0000 80 chr19:13067990-13068070 1.0000 80 chr16:31724587-31724667 1.0000 80 chr7:143078380-143078460 1.0000 80 chr7:17980084-17980164 1.0000 80 chr5:36876722-36876802 1.0000 80 chr2:197664411-197664491 1.0000 80 chr11:63448933-63449013 1.0000 80 chr6:107780696-107780776 1.0000 80 chr5:612448-612528 1.0000 80 chrX:21857666-21857746 1.0000 80 chr19:13229049-13229129 1.0000 80 chr3:152879964-152880044 1.0000 80 chr8:124286444-124286524 1.0000 80 chr7:99716924-99717004 1.0000 80 chr20:30795496-30795576 1.0000 80 chr14:39639632-39639712 1.0000 80 chr1:76190413-76190493 1.0000 80 chr17:72744726-72744806 1.0000 80 chr20:60641073-60641153 1.0000 80 chr11:5526807-5526887 1.0000 80 chr19:55897284-55897364 1.0000 80 chrX:48858603-48858683 1.0000 80 chr1:94374951-94375031 1.0000 80 chr11:62341266-62341346 1.0000 80 chr1:62190731-62190811 1.0000 80 chr2:223725716-223725796 1.0000 80 chr12:58335370-58335450 1.0000 80 chr17:57696605-57696685 1.0000 80 chr1:40042427-40042507 1.0000 80 chr1:161172128-161172208 1.0000 80 chr7:12727219-12727299 1.0000 80 chr7:77325732-77325812 1.0000 80 chr9:140095153-140095233 1.0000 80 chr8:67837730-67837810 1.0000 80 chr8:74205756-74205836 1.0000 80 chr5:179159816-179159896 1.0000 80 chr4:74088760-74088840 1.0000 80 chr14:103989125-10398920 1.0000 80 chr2:170683922-170684002 1.0000 80 chr3:150321072-150321152 1.0000 80 chr1:160232210-160232290 1.0000 80 chr1:179846887-179846967 1.0000 80 chr12:7000154-7000234 1.0000 80 chr8:95835481-95835561 1.0000 80 chr19:18942713-18942793 1.0000 80 chr11:93474590-93474670 1.0000 80 chr18:60190041-60190121 1.0000 80 chr15:63449630-63449710 1.0000 80 chr3:44552063-44552143 1.0000 80 chr17:57970429-57970509 1.0000 80 chr7:72992863-72992943 1.0000 80 chr11:64937659-64937739 1.0000 80 chr5:137514266-137514346 1.0000 80 chr5:140079994-140080074 1.0000 80 chr4:6642364-6642444 1.0000 80 chr17:7387680-7387760 1.0000 80 chr16:57481375-57481455 1.0000 80 chr20:44563330-44563410 1.0000 80 chr5:151138083-151138163 1.0000 80 chr3:154042227-154042307 1.0000 80 chr17:28443842-28443922 1.0000 80 chr14:90863325-90863405 1.0000 80 chr5:40798193-40798273 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_TAF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/TAF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.163 C 0.331 G 0.334 T 0.172 Background letter frequencies (from file dataset with add-one prior applied): A 0.163 C 0.331 G 0.334 T 0.172 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCATCTT MEME-1 width = 8 sites = 56 llr = 566 E-value = 1.5e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:1:: pos.-specific C :aa::6:: probability G 9::::1:: matrix T 1:::a2aa bits 2.6 ** * 2.4 ** ** 2.1 ** ** 1.8 ** ** Relative 1.6 * ** ** Entropy 1.3 ***** ** (14.6 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel GCCATCTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:40798193-40798273 67 1.00e-05 CTCGGCTGTC GCCATCTT TCTCCA chr5:137514266-137514346 33 1.00e-05 CGTTCCCGTC GCCATCTT GGCCCCGAAG chr1:160232210-160232290 19 1.00e-05 caacgccgcc gccatctt acactggcca chr1:62190731-62190811 57 1.00e-05 CCAGGCGGCC GCCATCTT GGAGACCGAC chr7:99716924-99717004 40 1.00e-05 GGCGCTCGGC GCCATCTT GGCCCCGCCC chr8:124286444-124286524 50 1.00e-05 CCACGCCGCC GCCATCTT GCATTTCAAA chr7:17980084-17980164 18 1.00e-05 CGGACGCGCC GCCATCTT GGAAGAGCGA chr19:13067990-13068070 32 1.00e-05 CACGGACGCC GCCATCTT GGCTGTGCGG chr20:1447447-1447527 18 1.00e-05 TCGCTCCGCC GCCATCTT CGCCCCGTGC chr6:43655470-43655550 42 1.00e-05 CTTGAGGGCC GCCATCTT CAAAAACCTA chr8:145688206-145688286 23 1.00e-05 cggcacggcc gccatctt tgttttcgct chr11:76155653-76155733 51 1.00e-05 AACCGCTAGC GCCATCTT GGCCGCTACG chr11:62414019-62414099 48 1.00e-05 CGCTACCGCC GCCATCTT GTGCAGAGTT chr7:74489603-74489683 5 1.00e-05 CGCC GCCATCTT GCGTGACCCT chr6:42185550-42185630 33 1.00e-05 TGTCCGCGCC GCCATCTT GCCGGTCCCG chr17:40021585-40021665 34 1.00e-05 tgccgcagcc gccATCTT GACGCCGCTG chr17:42767087-42767167 30 1.00e-05 GCTGGGCGCC GCCATCTT GGGGTCAGGG chr1:160254852-160254932 58 1.00e-05 CTCAGCGGCG GCCATCTT GCTACCTCCG chr17:37607452-37607532 42 1.00e-05 CGAGGCCGCC GCCATCTT CCCCAACGGA chr14:23540725-23540805 35 1.00e-05 ATGCAGGGGA GCCATCTT GCCACTTACC chr10:120938239-12093831 59 1.00e-05 TACAGCAGCC GCCATCTT CAGTGCACTC chr1:100715318-100715398 54 1.00e-05 ACGGACTGCA GCCATCTT ACCCCGGAAA chr12:117628212-11762829 45 1.00e-05 tgctgccgcc gccATCTT GTCCGCGTAC chr11:67007466-67007546 42 1.00e-05 TCCCCCTCCT GCCATCTT CCGTTGCAAA chr12:123849337-12384941 41 1.00e-05 CCTCCCCGCC GCCATCTT GACGCCCCTC chr4:2010628-2010708 54 1.00e-05 CCGCATGGAC GCCATCTT GGGGGAAAGC chr7:43909047-43909127 43 1.00e-05 CACGGAGGCC GCCATCTT GGGCCAAGCG chr19:56135856-56135936 67 1.00e-05 GCGCGCAGCG GCCATCTT GTGCCC chr19:1174219-1174299 41 1.00e-05 GGTTTCGGGC GCCATCTT GGGGGCCCCG chr21:47744307-47744387 55 1.00e-05 CCTGGCCGCC GCCATCTT GAATCCGCCG chr6:70506709-70506789 60 1.00e-05 GCCAGAAGTC GCCATCTT CGCTTCCGGT chr8:41909477-41909557 12 1.00e-05 TGACACGGCC GCCATCTT GGAGACAGTG chr19:1021083-1021163 22 1.00e-05 GGCCGCCGCC GCCATCTT CCGCTTTCTC chr8:95835481-95835561 34 1.53e-05 GGCCCGCGCC GCCATTTT GGATTGTGTG chr11:77531726-77531806 30 1.53e-05 cgccgccgtc gccATTTT GAACTGGAGG chr8:97247708-97247788 46 1.53e-05 CTGCTTACCA GCCATTTT GACCAGAAAG chr11:82868167-82868247 64 1.53e-05 CACTGCCGCC GCCATTTT GTGTCTGTG chr5:170814484-170814564 11 1.53e-05 GGCTGCCGAC GCCATTTT GCAGGGTGGG chr19:5978055-5978135 34 1.53e-05 CGCCAGGTCC GCCATTTT ACTTCCTTAA chr16:15982381-15982461 57 1.53e-05 TGCCACAGTC GCCATTTT TCAACGGCCG chr3:52312586-52312666 50 1.53e-05 CATTGTGTCC GCCATTTT GGGGCGACAG chr6:107780696-107780776 57 2.02e-05 TGTGGAGGAC GCCATATT GGAGGCATGG chr2:26101309-26101389 4 2.02e-05 GCT GCCATATT GGGTTCTTAC chr3:69129468-69129548 32 2.02e-05 CTCGCCATCC GCCATATT GTTCTCCGCC chr12:95397432-95397512 20 2.54e-05 CTGCACTAAC TCCATCTT GCCTCGCTGG chrX:48858603-48858683 33 3.55e-05 CAGAGCTTGC GCCATGTT CCTCCCCCCA chr1:77685081-77685161 2 3.55e-05 G GCCATGTT TACCGGCTTC chr9:72374832-72374912 18 3.55e-05 GCTGGTCTCG GCCATGTT GGCGGCGGCC chr15:93425973-93426053 6 3.55e-05 AAGAG GCCATGTT GTGTGGTGTG chr4:6642364-6642444 45 3.82e-05 CGGCCGGGAC TCCATTTT GTTCGCCGTT chr6:42713752-42713832 55 4.60e-05 ACTGACGGAC TCCATATT GGCTTCAAGC chr7:72992863-72992943 12 5.39e-05 CTGCGAGAGC TCCATGTT GGTGGAACCA chr11:118661945-11866202 49 5.65e-05 GGCCGCCGCG GCTATATT CGCCGCGGCG chr11:107328481-10732856 57 7.60e-05 CATACTTGTT GCCATCGT AAAGCTAAGA chr5:170921708-170921788 44 7.87e-05 CTCGGCCGGC TCTATCTT TCTGGATCAG chr20:30795496-30795576 31 9.41e-05 CGGCGGTCGG GCCATTGT GCGGTGCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:40798193-40798273 1e-05 66_[+1]_6 chr5:137514266-137514346 1e-05 32_[+1]_40 chr1:160232210-160232290 1e-05 18_[+1]_54 chr1:62190731-62190811 1e-05 56_[+1]_16 chr7:99716924-99717004 1e-05 39_[+1]_33 chr8:124286444-124286524 1e-05 49_[+1]_23 chr7:17980084-17980164 1e-05 17_[+1]_55 chr19:13067990-13068070 1e-05 31_[+1]_41 chr20:1447447-1447527 1e-05 17_[+1]_55 chr6:43655470-43655550 1e-05 41_[+1]_31 chr8:145688206-145688286 1e-05 22_[+1]_50 chr11:76155653-76155733 1e-05 50_[+1]_22 chr11:62414019-62414099 1e-05 47_[+1]_25 chr7:74489603-74489683 1e-05 4_[+1]_68 chr6:42185550-42185630 1e-05 32_[+1]_40 chr17:40021585-40021665 1e-05 33_[+1]_39 chr17:42767087-42767167 1e-05 29_[+1]_43 chr1:160254852-160254932 1e-05 57_[+1]_15 chr17:37607452-37607532 1e-05 41_[+1]_31 chr14:23540725-23540805 1e-05 34_[+1]_38 chr10:120938239-12093831 1e-05 58_[+1]_14 chr1:100715318-100715398 1e-05 53_[+1]_19 chr12:117628212-11762829 1e-05 44_[+1]_28 chr11:67007466-67007546 1e-05 41_[+1]_31 chr12:123849337-12384941 1e-05 40_[+1]_32 chr4:2010628-2010708 1e-05 53_[+1]_19 chr7:43909047-43909127 1e-05 42_[+1]_30 chr19:56135856-56135936 1e-05 66_[+1]_6 chr19:1174219-1174299 1e-05 40_[+1]_32 chr21:47744307-47744387 1e-05 54_[+1]_18 chr6:70506709-70506789 1e-05 59_[+1]_13 chr8:41909477-41909557 1e-05 11_[+1]_61 chr19:1021083-1021163 1e-05 21_[+1]_51 chr8:95835481-95835561 1.5e-05 33_[+1]_39 chr11:77531726-77531806 1.5e-05 29_[+1]_43 chr8:97247708-97247788 1.5e-05 45_[+1]_27 chr11:82868167-82868247 1.5e-05 63_[+1]_9 chr5:170814484-170814564 1.5e-05 10_[+1]_62 chr19:5978055-5978135 1.5e-05 33_[+1]_39 chr16:15982381-15982461 1.5e-05 56_[+1]_16 chr3:52312586-52312666 1.5e-05 49_[+1]_23 chr6:107780696-107780776 2e-05 56_[+1]_16 chr2:26101309-26101389 2e-05 3_[+1]_69 chr3:69129468-69129548 2e-05 31_[+1]_41 chr12:95397432-95397512 2.5e-05 19_[+1]_53 chrX:48858603-48858683 3.6e-05 32_[+1]_40 chr1:77685081-77685161 3.6e-05 1_[+1]_71 chr9:72374832-72374912 3.6e-05 17_[+1]_55 chr15:93425973-93426053 3.6e-05 5_[+1]_67 chr4:6642364-6642444 3.8e-05 44_[+1]_28 chr6:42713752-42713832 4.6e-05 54_[+1]_18 chr7:72992863-72992943 5.4e-05 11_[+1]_61 chr11:118661945-11866202 5.6e-05 48_[+1]_24 chr11:107328481-10732856 7.6e-05 56_[+1]_16 chr5:170921708-170921788 7.9e-05 43_[+1]_29 chr20:30795496-30795576 9.4e-05 30_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATCTT width=8 seqs=56 chr5:40798193-40798273 ( 67) GCCATCTT 1 chr5:137514266-137514346 ( 33) GCCATCTT 1 chr1:160232210-160232290 ( 19) GCCATCTT 1 chr1:62190731-62190811 ( 57) GCCATCTT 1 chr7:99716924-99717004 ( 40) GCCATCTT 1 chr8:124286444-124286524 ( 50) GCCATCTT 1 chr7:17980084-17980164 ( 18) GCCATCTT 1 chr19:13067990-13068070 ( 32) GCCATCTT 1 chr20:1447447-1447527 ( 18) GCCATCTT 1 chr6:43655470-43655550 ( 42) GCCATCTT 1 chr8:145688206-145688286 ( 23) GCCATCTT 1 chr11:76155653-76155733 ( 51) GCCATCTT 1 chr11:62414019-62414099 ( 48) GCCATCTT 1 chr7:74489603-74489683 ( 5) GCCATCTT 1 chr6:42185550-42185630 ( 33) GCCATCTT 1 chr17:40021585-40021665 ( 34) GCCATCTT 1 chr17:42767087-42767167 ( 30) GCCATCTT 1 chr1:160254852-160254932 ( 58) GCCATCTT 1 chr17:37607452-37607532 ( 42) GCCATCTT 1 chr14:23540725-23540805 ( 35) GCCATCTT 1 chr10:120938239-12093831 ( 59) GCCATCTT 1 chr1:100715318-100715398 ( 54) GCCATCTT 1 chr12:117628212-11762829 ( 45) GCCATCTT 1 chr11:67007466-67007546 ( 42) GCCATCTT 1 chr12:123849337-12384941 ( 41) GCCATCTT 1 chr4:2010628-2010708 ( 54) GCCATCTT 1 chr7:43909047-43909127 ( 43) GCCATCTT 1 chr19:56135856-56135936 ( 67) GCCATCTT 1 chr19:1174219-1174299 ( 41) GCCATCTT 1 chr21:47744307-47744387 ( 55) GCCATCTT 1 chr6:70506709-70506789 ( 60) GCCATCTT 1 chr8:41909477-41909557 ( 12) GCCATCTT 1 chr19:1021083-1021163 ( 22) GCCATCTT 1 chr8:95835481-95835561 ( 34) GCCATTTT 1 chr11:77531726-77531806 ( 30) GCCATTTT 1 chr8:97247708-97247788 ( 46) GCCATTTT 1 chr11:82868167-82868247 ( 64) GCCATTTT 1 chr5:170814484-170814564 ( 11) GCCATTTT 1 chr19:5978055-5978135 ( 34) GCCATTTT 1 chr16:15982381-15982461 ( 57) GCCATTTT 1 chr3:52312586-52312666 ( 50) GCCATTTT 1 chr6:107780696-107780776 ( 57) GCCATATT 1 chr2:26101309-26101389 ( 4) GCCATATT 1 chr3:69129468-69129548 ( 32) GCCATATT 1 chr12:95397432-95397512 ( 20) TCCATCTT 1 chrX:48858603-48858683 ( 33) GCCATGTT 1 chr1:77685081-77685161 ( 2) GCCATGTT 1 chr9:72374832-72374912 ( 18) GCCATGTT 1 chr15:93425973-93426053 ( 6) GCCATGTT 1 chr4:6642364-6642444 ( 45) TCCATTTT 1 chr6:42713752-42713832 ( 55) TCCATATT 1 chr7:72992863-72992943 ( 12) TCCATGTT 1 chr11:118661945-11866202 ( 49) GCTATATT 1 chr11:107328481-10732856 ( 57) GCCATCGT 1 chr5:170921708-170921788 ( 44) TCTATCTT 1 chr20:30795496-30795576 ( 31) GCCATTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95106 E= 1.5e-067 -1245 -1245 145 -95 -1245 160 -1245 -1245 -1245 154 -1245 -227 261 -1245 -1245 -1245 -1245 -1245 -1245 254 -87 96 -190 5 -1245 -1245 -322 248 -1245 -1245 -1245 254 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.5e-067 0.000000 0.000000 0.910714 0.089286 0.000000 1.000000 0.000000 0.000000 0.000000 0.964286 0.000000 0.035714 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.089286 0.642857 0.089286 0.178571 0.000000 0.000000 0.035714 0.964286 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCTT MEME-1 regular expression -------------------------------------------------------------------------------- GCCATCTT -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGATGGC MEME-2 width = 8 sites = 42 llr = 419 E-value = 5.9e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9a2a:::: pos.-specific C ::2::::a probability G 1:6::aa: matrix T ::::a::: bits 2.6 * * 2.4 * ** 2.1 * ** 1.8 ** ** Relative 1.6 ** ***** Entropy 1.3 ** ***** (14.4 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel AAGATGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:28443842-28443922 17 9.19e-06 ACACGGGAGC AAGATGGC GATTCCGGGC chr20:44563330-44563410 14 9.19e-06 CCCGGGACAC AAGATGGC GGCAGCGGCG chr5:140079994-140080074 49 9.19e-06 CTTCGCTGTG AAGATGGC GTCGGGCAGC chr5:179159816-179159896 28 9.19e-06 AAACAATTTT AAGATGGC GGCCGCGGCG chr1:161172128-161172208 45 9.19e-06 CAGCCGGAGT AAGATGGC GGCGCTGAGG chr1:161284143-161284223 50 9.19e-06 ACCGGAACCC AAGATGGC TGCGCTGTTG chr4:57333761-57333841 38 9.19e-06 CGTCTCCTCC AAGATGGC GAGCGGCGGC chr11:31531328-31531408 1 9.19e-06 . AAGATGGC GGCAGTGGCA chr2:27851904-27851984 19 9.19e-06 GGCCAGGAGG AAGATGGC GGCGTCCGCA chr9:139305070-139305150 48 9.19e-06 GCGGAGACGC AAGATGGC GGCTGTGGTG chr1:150337139-150337219 49 9.19e-06 GCAAACCGGG AAGATGGC GGCCGGCGGC chr6:43445307-43445387 23 9.19e-06 GCCCCGCGGC AAGATGGC GGCCTGAACG chr9:139702368-139702448 31 9.19e-06 AGCCGGCGCC AAGATGGC GGCGCTGACT chr9:32552330-32552410 7 9.19e-06 GGCTAA AAGATGGC TGCTGGCGCC chr2:128459069-128459149 31 9.19e-06 CGCCTTGTCC AAGATGGC GGACCTCCAC chr2:86426576-86426656 35 9.19e-06 GGCGAAGGTG AAGATGGC TGCCTCTGCC chr1:100503632-100503712 38 9.19e-06 CCGGGCCCTC AAGATGGC GGCGGGCGCC chr22:39795781-39795861 24 9.19e-06 GGGTTCCTCC AAGATGGC GGCGCAGAGG chr1:161129271-161129351 40 9.19e-06 GGGACCAACA AAGATGGC GGCGGCCCCT chr11:118661945-11866202 23 9.19e-06 TCCTCCACTC AAGATGGC GAAACCTCGG chr10:105127707-10512778 37 9.19e-06 GCTCAGCCGC AAGATGGC GGCGCTGGCG chr16:57481375-57481455 40 1.37e-05 GCCCGCTTCC AAAATGGC GGCGGCGGCG chr7:77325732-77325812 52 1.37e-05 ACAGGAGCGC AAAATGGC GGAACCGCCG chr19:8509841-8509921 39 1.37e-05 AGACGCGGAG AAAATGGC GGCAGGGGTC chr12:111180659-11118073 41 1.37e-05 CGAGAAGAAC AAAATGGC CGCCGACTCC chr2:67624432-67624512 40 1.37e-05 CCCACCGACC AAAATGGC GGCTGCCGTT chr1:76190413-76190493 57 2.28e-05 AACGGGAGCC AACATGGC AGCGGGGTTC chr5:612448-612528 26 2.28e-05 CTCCGTTTGA AACATGGC GCGGGCTGGC chr9:132816191-132816271 18 2.28e-05 TGCTGGAACA AACATGGC CGCTCTGGCG chr3:169684566-169684646 42 2.28e-05 CGGAGCGGCC AACATGGC GGAACGCAGG chr15:69110570-69110650 10 2.28e-05 gccccgggA AACATGGC TGCTCGTCCT chr3:180630444-180630524 27 2.28e-05 TTGCGGTTCC AACATGGC GGAGCTGACG chr1:222791445-222791525 5 2.28e-05 CCAC AACATGGC TGCGGCGCCT chrX:73072504-73072584 41 2.75e-05 GAGAGTAAGA AATATGGC TGCAGCAGCG chr15:44829334-44829414 56 5.60e-05 CACCCGGCTC GAGATggc ggcggcggcg chr15:93443569-93443649 4 5.60e-05 CTC TAGATGGC GGCTGTGCCT chr10:74451862-74451942 45 5.60e-05 TTCCAGTTGA GAGATGGC GGCCGCCGCA chr17:7387680-7387760 43 6.47e-05 ACGGTTGGAG AAGAAGGC GGCTCCCGGA chr11:119187770-11918785 10 6.47e-05 GCGGCGAGC AAGAAGGC GCAGACCAGC chr3:154042227-154042307 20 7.86e-05 GCAACCGCTG GAAATGGC GTCCGGGCCC chr12:7000154-7000234 32 7.86e-05 TAGCGGGGAG GAAATGGC AAATGACACA chr15:52311408-52311488 37 1.11e-04 GGGTCGGGGT TACATGGC GGCGACTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:28443842-28443922 9.2e-06 16_[+2]_56 chr20:44563330-44563410 9.2e-06 13_[+2]_59 chr5:140079994-140080074 9.2e-06 48_[+2]_24 chr5:179159816-179159896 9.2e-06 27_[+2]_45 chr1:161172128-161172208 9.2e-06 44_[+2]_28 chr1:161284143-161284223 9.2e-06 49_[+2]_23 chr4:57333761-57333841 9.2e-06 37_[+2]_35 chr11:31531328-31531408 9.2e-06 [+2]_72 chr2:27851904-27851984 9.2e-06 18_[+2]_54 chr9:139305070-139305150 9.2e-06 47_[+2]_25 chr1:150337139-150337219 9.2e-06 48_[+2]_24 chr6:43445307-43445387 9.2e-06 22_[+2]_50 chr9:139702368-139702448 9.2e-06 30_[+2]_42 chr9:32552330-32552410 9.2e-06 6_[+2]_66 chr2:128459069-128459149 9.2e-06 30_[+2]_42 chr2:86426576-86426656 9.2e-06 34_[+2]_38 chr1:100503632-100503712 9.2e-06 37_[+2]_35 chr22:39795781-39795861 9.2e-06 23_[+2]_49 chr1:161129271-161129351 9.2e-06 39_[+2]_33 chr11:118661945-11866202 9.2e-06 22_[+2]_50 chr10:105127707-10512778 9.2e-06 36_[+2]_36 chr16:57481375-57481455 1.4e-05 39_[+2]_33 chr7:77325732-77325812 1.4e-05 51_[+2]_21 chr19:8509841-8509921 1.4e-05 38_[+2]_34 chr12:111180659-11118073 1.4e-05 40_[+2]_32 chr2:67624432-67624512 1.4e-05 39_[+2]_33 chr1:76190413-76190493 2.3e-05 56_[+2]_16 chr5:612448-612528 2.3e-05 25_[+2]_47 chr9:132816191-132816271 2.3e-05 17_[+2]_55 chr3:169684566-169684646 2.3e-05 41_[+2]_31 chr15:69110570-69110650 2.3e-05 9_[+2]_63 chr3:180630444-180630524 2.3e-05 26_[+2]_46 chr1:222791445-222791525 2.3e-05 4_[+2]_68 chrX:73072504-73072584 2.8e-05 40_[+2]_32 chr15:44829334-44829414 5.6e-05 55_[+2]_17 chr15:93443569-93443649 5.6e-05 3_[+2]_69 chr10:74451862-74451942 5.6e-05 44_[+2]_28 chr17:7387680-7387760 6.5e-05 42_[+2]_30 chr11:119187770-11918785 6.5e-05 9_[+2]_63 chr3:154042227-154042307 7.9e-05 19_[+2]_53 chr12:7000154-7000234 7.9e-05 31_[+2]_41 chr15:52311408-52311488 0.00011 36_[+2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGATGGC width=8 seqs=42 chr17:28443842-28443922 ( 17) AAGATGGC 1 chr20:44563330-44563410 ( 14) AAGATGGC 1 chr5:140079994-140080074 ( 49) AAGATGGC 1 chr5:179159816-179159896 ( 28) AAGATGGC 1 chr1:161172128-161172208 ( 45) AAGATGGC 1 chr1:161284143-161284223 ( 50) AAGATGGC 1 chr4:57333761-57333841 ( 38) AAGATGGC 1 chr11:31531328-31531408 ( 1) AAGATGGC 1 chr2:27851904-27851984 ( 19) AAGATGGC 1 chr9:139305070-139305150 ( 48) AAGATGGC 1 chr1:150337139-150337219 ( 49) AAGATGGC 1 chr6:43445307-43445387 ( 23) AAGATGGC 1 chr9:139702368-139702448 ( 31) AAGATGGC 1 chr9:32552330-32552410 ( 7) AAGATGGC 1 chr2:128459069-128459149 ( 31) AAGATGGC 1 chr2:86426576-86426656 ( 35) AAGATGGC 1 chr1:100503632-100503712 ( 38) AAGATGGC 1 chr22:39795781-39795861 ( 24) AAGATGGC 1 chr1:161129271-161129351 ( 40) AAGATGGC 1 chr11:118661945-11866202 ( 23) AAGATGGC 1 chr10:105127707-10512778 ( 37) AAGATGGC 1 chr16:57481375-57481455 ( 40) AAAATGGC 1 chr7:77325732-77325812 ( 52) AAAATGGC 1 chr19:8509841-8509921 ( 39) AAAATGGC 1 chr12:111180659-11118073 ( 41) AAAATGGC 1 chr2:67624432-67624512 ( 40) AAAATGGC 1 chr1:76190413-76190493 ( 57) AACATGGC 1 chr5:612448-612528 ( 26) AACATGGC 1 chr9:132816191-132816271 ( 18) AACATGGC 1 chr3:169684566-169684646 ( 42) AACATGGC 1 chr15:69110570-69110650 ( 10) AACATGGC 1 chr3:180630444-180630524 ( 27) AACATGGC 1 chr1:222791445-222791525 ( 5) AACATGGC 1 chrX:73072504-73072584 ( 41) AATATGGC 1 chr15:44829334-44829414 ( 56) GAGATGGC 1 chr15:93443569-93443649 ( 4) TAGATGGC 1 chr10:74451862-74451942 ( 45) GAGATGGC 1 chr17:7387680-7387760 ( 43) AAGAAGGC 1 chr11:119187770-11918785 ( 10) AAGAAGGC 1 chr3:154042227-154042307 ( 20) GAAATGGC 1 chr12:7000154-7000234 ( 32) GAAATGGC 1 chr15:52311408-52311488 ( 37) TACATGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2669 E= 5.9e-039 239 -1204 -181 -185 261 -1204 -1204 -1204 3 -79 89 -285 261 -1204 -1204 -1204 -178 -1204 -1204 247 -1204 -1204 158 -1204 -1204 -1204 158 -1204 -1204 160 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 5.9e-039 0.857143 0.000000 0.095238 0.047619 1.000000 0.000000 0.000000 0.000000 0.166667 0.190476 0.619048 0.023810 1.000000 0.000000 0.000000 0.000000 0.047619 0.000000 0.000000 0.952381 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGC MEME-2 regular expression -------------------------------------------------------------------------------- AAGATGGC -------------------------------------------------------------------------------- Time 8.48 secs. ******************************************************************************** ******************************************************************************** MOTIF YRTTTATA MEME-3 width = 8 sites = 12 llr = 122 E-value = 4.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YRTTTATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :5:2:a18 pos.-specific C 3:3::::: probability G :4:::::: matrix T 7188a:93 bits 2.6 ** 2.4 ** 2.1 *** 1.8 ***** Relative 1.6 ****** Entropy 1.3 * ****** (14.6 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TATTTATA consensus CGC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRTTTATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:103876362-103876442 55 6.52e-07 GCGACGCCAG TATTTATA TTAGGGGGCG chr1:40042427-40042507 58 3.93e-06 GCCACCGCTC CATTTATA CCCGCCCGCC chr14:90863325-90863405 16 4.55e-06 CGGCGCACCA TATATATA TCGCGGGGCG chr1:32801797-32801877 60 4.55e-06 CCGAGCTGCC TATATATA AGCGCCCGGA chr8:101734284-101734364 55 5.80e-06 CTGCACCCTC TACTTATA CCCCGCGCCG chr17:37026273-37026353 6 7.90e-06 CGCTG TGTTTATT AGGGGAAGGA chr1:43424501-43424581 62 1.05e-05 CGGACCGTAG CGTTTATA GGACCCCGGC chr5:60628035-60628115 15 1.05e-05 TTCCTAGTGC CGTTTATA GGGTCCCGGC chr20:44601253-44601333 9 1.94e-05 TGACTCAT TACTTATT ACTTAGCGCG chr12:7000154-7000234 58 2.63e-05 CAGCAAAAAA TGTTTAAA ACCAGGATTC chr17:62502362-62502442 68 2.63e-05 CCGGCAGCCG CTTTTATA GTCTG chr17:5185550-5185630 14 3.93e-05 GCCTGCGCAC TGCTTATT TCCCGCTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRTTTATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:103876362-103876442 6.5e-07 54_[+3]_18 chr1:40042427-40042507 3.9e-06 57_[+3]_15 chr14:90863325-90863405 4.5e-06 15_[+3]_57 chr1:32801797-32801877 4.5e-06 59_[+3]_13 chr8:101734284-101734364 5.8e-06 54_[+3]_18 chr17:37026273-37026353 7.9e-06 5_[+3]_67 chr1:43424501-43424581 1e-05 61_[+3]_11 chr5:60628035-60628115 1e-05 14_[+3]_58 chr20:44601253-44601333 1.9e-05 8_[+3]_64 chr12:7000154-7000234 2.6e-05 57_[+3]_15 chr17:62502362-62502442 2.6e-05 67_[+3]_5 chr17:5185550-5185630 3.9e-05 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRTTTATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YRTTTATA width=8 seqs=12 chr8:103876362-103876442 ( 55) TATTTATA 1 chr1:40042427-40042507 ( 58) CATTTATA 1 chr14:90863325-90863405 ( 16) TATATATA 1 chr1:32801797-32801877 ( 60) TATATATA 1 chr8:101734284-101734364 ( 55) TACTTATA 1 chr17:37026273-37026353 ( 6) TGTTTATT 1 chr1:43424501-43424581 ( 62) CGTTTATA 1 chr5:60628035-60628115 ( 15) CGTTTATA 1 chr20:44601253-44601333 ( 9) TACTTATT 1 chr12:7000154-7000234 ( 58) TGTTTAAA 1 chr17:62502362-62502442 ( 68) CTTTTATA 1 chr17:5185550-5185630 ( 14) TGCTTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRTTTATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 4.6e+001 -1023 1 -1023 195 161 -1023 32 -105 -1023 -40 -1023 212 3 -1023 -1023 227 -1023 -1023 -1023 254 261 -1023 -1023 -1023 -97 -1023 -1023 241 220 -1023 -1023 54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRTTTATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.6e+001 0.000000 0.333333 0.000000 0.666667 0.500000 0.000000 0.416667 0.083333 0.000000 0.250000 0.000000 0.750000 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.000000 0.916667 0.750000 0.000000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRTTTATA MEME-3 regular expression -------------------------------------------------------------------------------- [TC][AG][TC]TTAT[AT] -------------------------------------------------------------------------------- Time 12.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAAAAA MEME-4 width = 8 sites = 2 llr = 26 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:aaaaa pos.-specific C a:a::::: probability G :::::::: matrix T :::::::: bits 2.6 * ***** 2.4 * ***** 2.1 * ***** 1.8 * ***** Relative 1.6 ******** Entropy 1.3 ******** (18.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CACAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:74205756-74205836 16 2.05e-06 GAAAAAGTGA CACAAAAA GTATCTGGCT chr22:40573890-40573970 19 2.05e-06 ATTTGAAGGT CACAAAAA GCTGCTTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:74205756-74205836 2.1e-06 15_[+4]_57 chr22:40573890-40573970 2.1e-06 18_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAAAAA width=8 seqs=2 chr8:74205756-74205836 ( 16) CACAAAAA 1 chr22:40573890-40573970 ( 19) CACAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.7e+003 -765 159 -765 -765 261 -765 -765 -765 -765 159 -765 -765 261 -765 -765 -765 261 -765 -765 -765 261 -765 -765 -765 261 -765 -765 -765 261 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.7e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAAAAA MEME-4 regular expression -------------------------------------------------------------------------------- CACAAAAA -------------------------------------------------------------------------------- Time 15.66 secs. ******************************************************************************** ******************************************************************************** MOTIF MAATGAST MEME-5 width = 8 sites = 12 llr = 119 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAATGAST MEME-5 Description -------------------------------------------------------------------------------- Simplified A 5aa::a23 pos.-specific C 4:::::5: probability G ::::8:3: matrix T 1::a3::8 bits 2.6 *** * 2.4 *** * 2.1 *** * 1.8 *** * * Relative 1.6 *** * * Entropy 1.3 *** * * (14.3 bits) 1.0 ***** * 0.8 ****** * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel AAATGACT consensus C T GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATGAST MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:62502362-62502442 33 5.78e-06 AGACCGGTAG AAATGAAT GAGGTGCCGG chr10:52178168-52178248 68 5.78e-06 GGCAAAAAAG AAATGAGT CAGCC chr1:8938051-8938131 37 5.78e-06 TCTCGGAGTT AAATGAGT CACCGCTTAC chr1:94374951-94375031 58 1.34e-05 TCCTGGAAGA CAATGACT AAGCAGAAAT chr18:53257053-53257133 21 1.34e-05 CTCCTCCAGA CAATGACT GGGAAGGGGC chr12:7000154-7000234 40 1.56e-05 AGGAAATGGC AAATGACA CAGCAAAAAA chr1:100715318-100715398 69 1.56e-05 CTTACCCCGG AAATGACA ACAG chr19:13229049-13229129 53 2.27e-05 GCCTGGCCCA CAATGAAT ggccgccgcg chr5:170921708-170921788 7 2.95e-05 ACAGCT AAATTACA TTAAGACATA chr1:68150862-68150942 57 3.31e-05 GGCAGCGGCC CAATTAGT GTCGTGCGGC chr6:161695217-161695297 42 3.31e-05 CTTCCCCTTC CAATTAGT GTAAGGCAGT chr15:72529850-72529930 39 3.72e-05 AGAAACCCAG TAATGACT CAGCACCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATGAST MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:62502362-62502442 5.8e-06 32_[+5]_40 chr10:52178168-52178248 5.8e-06 67_[+5]_5 chr1:8938051-8938131 5.8e-06 36_[+5]_36 chr1:94374951-94375031 1.3e-05 57_[+5]_15 chr18:53257053-53257133 1.3e-05 20_[+5]_52 chr12:7000154-7000234 1.6e-05 39_[+5]_33 chr1:100715318-100715398 1.6e-05 68_[+5]_4 chr19:13229049-13229129 2.3e-05 52_[+5]_20 chr5:170921708-170921788 2.9e-05 6_[+5]_66 chr1:68150862-68150942 3.3e-05 56_[+5]_16 chr6:161695217-161695297 3.3e-05 41_[+5]_31 chr15:72529850-72529930 3.7e-05 38_[+5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATGAST MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAATGAST width=8 seqs=12 chr17:62502362-62502442 ( 33) AAATGAAT 1 chr10:52178168-52178248 ( 68) AAATGAGT 1 chr1:8938051-8938131 ( 37) AAATGAGT 1 chr1:94374951-94375031 ( 58) CAATGACT 1 chr18:53257053-53257133 ( 21) CAATGACT 1 chr12:7000154-7000234 ( 40) AAATGACA 1 chr1:100715318-100715398 ( 69) AAATGACA 1 chr19:13229049-13229129 ( 53) CAATGAAT 1 chr5:170921708-170921788 ( 7) AAATTACA 1 chr1:68150862-68150942 ( 57) CAATTAGT 1 chr6:161695217-161695297 ( 42) CAATTAGT 1 chr15:72529850-72529930 ( 39) TAATGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATGAST MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6697 E= 2.9e+003 161 33 -1023 -105 261 -1023 -1023 -1023 261 -1023 -1023 -1023 -1023 -1023 -1023 254 -1023 -1023 117 54 261 -1023 -1023 -1023 3 60 0 -1023 61 -1023 -1023 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATGAST MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.9e+003 0.500000 0.416667 0.000000 0.083333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 1.000000 0.000000 0.000000 0.000000 0.166667 0.500000 0.333333 0.000000 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATGAST MEME-5 regular expression -------------------------------------------------------------------------------- [AC]AAT[GT]A[CG][TA] -------------------------------------------------------------------------------- Time 19.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:53185-53265 8.59e-01 80 chr10:105127707-10512778 2.88e-02 36_[+2(9.19e-06)]_36 chr7:25894907-25894987 2.29e-01 80 chr1:23495278-23495358 4.20e-01 80 chr1:222791445-222791525 1.12e-02 4_[+2(2.28e-05)]_68 chr11:119187770-11918785 6.03e-02 9_[+2(6.47e-05)]_63 chr11:129939745-12993982 4.82e-01 80 chr15:93425973-93426053 8.41e-02 5_[+1(3.55e-05)]_67 chr16:8962814-8962894 8.83e-01 80 chr6:161695217-161695297 6.10e-02 41_[+5(3.31e-05)]_31 chr1:167906787-167906867 1.19e-01 80 chr19:1021083-1021163 1.01e-01 21_[+1(1.00e-05)]_51 chr3:69129468-69129548 8.06e-02 31_[+1(2.02e-05)]_41 chrX:73072504-73072584 8.80e-03 40_[+2(2.75e-05)]_32 chr4:95373046-95373126 7.75e-01 80 chr6:41041586-41041666 4.18e-01 80 chr20:44601253-44601333 3.51e-02 8_[+3(1.94e-05)]_64 chr14:61201443-61201523 9.31e-01 80 chr8:41909477-41909557 2.80e-02 11_[+1(1.00e-05)]_61 chr11:64864090-64864170 8.56e-01 80 chrX:123096918-123096998 3.22e-01 80 chr5:170921708-170921788 3.03e-04 6_[+5(2.95e-05)]_29_[+1(7.87e-05)]_\ 29 chrX:102470046-102470126 8.12e-01 80 chr6:70506709-70506789 2.91e-02 59_[+1(1.00e-05)]_13 chr17:5185550-5185630 8.76e-02 13_[+3(3.93e-05)]_59 chr10:74451862-74451942 1.07e-01 44_[+2(5.60e-05)]_28 chr21:47744307-47744387 3.42e-02 54_[+1(1.00e-05)]_18 chr10:11936658-11936738 8.97e-01 80 chr19:1174219-1174299 1.09e-01 40_[+1(1.00e-05)]_32 chr16:14726551-14726631 8.60e-01 80 chr19:56135856-56135936 1.14e-01 66_[+1(1.00e-05)]_6 chr3:39195034-39195114 9.98e-01 80 chr11:118661945-11866202 6.28e-04 22_[+2(9.19e-06)]_18_[+1(5.65e-05)]_\ 24 chr6:31789979-31790059 3.98e-01 80 chr1:161129271-161129351 5.60e-03 39_[+2(9.19e-06)]_33 chr6:37137914-37137994 6.89e-01 80 chr5:60628035-60628115 3.40e-02 14_[+3(1.05e-05)]_58 chr10:89623321-89623401 9.50e-01 80 chr5:122847919-122847999 6.14e-01 80 chr22:39795781-39795861 6.62e-02 23_[+2(9.19e-06)]_49 chr16:47495232-47495312 6.43e-01 80 chr2:197036240-197036320 2.07e-01 80 chr1:113247927-113248007 7.69e-01 80 chr14:62162189-62162269 9.99e-01 80 chr7:101505731-101505811 4.93e-02 80 chr7:43909047-43909127 8.18e-02 42_[+1(1.00e-05)]_30 chr1:100503632-100503712 7.96e-02 37_[+2(9.19e-06)]_35 chr3:180630444-180630524 8.03e-02 26_[+2(2.28e-05)]_46 chr2:86426576-86426656 1.32e-02 34_[+2(9.19e-06)]_38 chr4:2010628-2010708 8.42e-02 53_[+1(1.00e-05)]_19 chr12:123849337-12384941 1.46e-01 40_[+1(1.00e-05)]_32 chr9:72374832-72374912 1.81e-01 17_[+1(3.55e-05)]_55 chr1:39491986-39492066 5.83e-01 80 chr11:107328481-10732856 8.40e-03 56_[+1(7.60e-05)]_16 chr2:128459069-128459149 5.19e-02 30_[+2(9.19e-06)]_42 chr5:114880373-114880453 9.19e-01 80 chr1:43424501-43424581 6.26e-02 61_[+3(1.05e-05)]_11 chr15:72529850-72529930 1.63e-02 38_[+5(3.72e-05)]_34 chr19:16738979-16739059 8.51e-01 80 chr1:159895231-159895311 4.82e-01 80 chr2:157190424-157190504 8.01e-01 80 chr2:174829574-174829654 8.25e-01 80 chr3:52312586-52312666 6.39e-02 49_[+1(1.53e-05)]_23 chr3:9439089-9439169 9.69e-01 80 chr9:32552330-32552410 1.21e-02 6_[+2(9.19e-06)]_66 chr16:3070328-3070408 5.36e-01 80 chr1:32801797-32801877 1.98e-02 59_[+3(4.55e-06)]_13 chr15:69110570-69110650 3.88e-02 9_[+2(2.28e-05)]_63 chr11:67007466-67007546 4.19e-02 41_[+1(1.00e-05)]_31 chr9:100818987-100819067 4.39e-01 80 chr12:120755319-12075539 9.10e-01 80 chr12:117628212-11762829 1.30e-01 44_[+1(1.00e-05)]_28 chr6:42713752-42713832 1.69e-02 54_[+1(4.60e-05)]_18 chr1:100715318-100715398 5.59e-05 53_[+1(1.00e-05)]_7_[+5(1.56e-05)]_\ 4 chr9:139702368-139702448 3.65e-02 30_[+2(9.19e-06)]_42 chr16:2955367-2955447 8.50e-01 80 chr2:67624432-67624512 1.87e-03 39_[+2(1.37e-05)]_33 chr1:8938051-8938131 4.62e-03 36_[+5(5.78e-06)]_36 chr6:43445307-43445387 4.01e-02 22_[+2(9.19e-06)]_50 chr11:62648335-62648415 9.93e-01 80 chr16:15982381-15982461 4.02e-02 56_[+1(1.53e-05)]_16 chr22:38006036-38006116 9.72e-01 80 chr10:52178168-52178248 1.56e-03 67_[+5(5.78e-06)]_5 chr10:120938239-12093831 1.28e-01 58_[+1(1.00e-05)]_14 chr5:126113943-126114023 3.20e-01 80 chr20:33543521-33543601 8.65e-01 80 chr12:111180659-11118073 1.49e-03 40_[+2(1.37e-05)]_32 chr7:134896206-134896286 6.47e-01 80 chr3:186288035-186288115 1.40e-01 80 chr1:68150862-68150942 6.93e-02 56_[+5(3.31e-05)]_16 chr17:77813209-77813289 8.84e-02 48_[+4(7.37e-05)]_24 chr10:6622432-6622512 9.40e-01 80 chr5:138609782-138609862 9.92e-01 80 chr1:150337139-150337219 7.53e-02 48_[+2(9.19e-06)]_24 chr20:39657461-39657541 2.83e-01 80 chr14:23540725-23540805 4.57e-02 34_[+1(1.00e-05)]_38 chr19:59055822-59055902 9.84e-01 80 chr2:192542809-192542889 7.01e-01 80 chr9:139305070-139305150 1.36e-02 47_[+2(9.19e-06)]_25 chr12:118810970-11881105 7.00e-01 80 chr17:37026273-37026353 1.85e-02 5_[+3(7.90e-06)]_67 chr2:208890250-208890330 1.73e-01 80 chr7:39989054-39989134 4.97e-01 80 chr10:103578157-10357823 4.21e-01 80 chr3:169684566-169684646 3.90e-03 41_[+2(2.28e-05)]_13_[+4(7.37e-05)]_\ 10 chrX:71496994-71497074 9.25e-02 80 chr22:40573890-40573970 6.02e-04 18_[+4(2.05e-06)]_54 chr6:31704240-31704320 8.98e-01 80 chr20:49126903-49126983 6.84e-01 80 chr19:5978055-5978135 1.27e-02 33_[+1(1.53e-05)]_39 chr2:70121055-70121135 1.80e-01 80 chr15:93443569-93443649 1.23e-01 3_[+2(5.60e-05)]_69 chr1:118148633-118148713 3.38e-01 80 chr17:37607452-37607532 4.44e-03 41_[+1(1.00e-05)]_31 chr1:160254852-160254932 5.86e-02 57_[+1(1.00e-05)]_15 chr5:27217801-27217881 7.49e-01 80 chr6:30923412-30923492 1.00e+00 80 chr5:137090013-137090093 1.84e-02 28_[+4(7.37e-05)]_44 chr17:42767087-42767167 1.41e-01 29_[+1(1.00e-05)]_43 chr10:72163881-72163961 9.96e-01 80 chr12:109125245-10912532 9.15e-01 80 chr5:170814484-170814564 1.14e-01 10_[+1(1.53e-05)]_62 chr5:177557993-177558073 7.44e-01 80 chr2:27851904-27851984 8.45e-02 18_[+2(9.19e-06)]_54 chr8:103876362-103876442 1.26e-04 54_[+3(6.52e-07)]_18 chr16:9185471-9185551 9.71e-01 80 chr12:95397432-95397512 1.55e-02 19_[+1(2.54e-05)]_53 chr17:40021585-40021665 1.39e-01 33_[+1(1.00e-05)]_39 chr2:111878450-111878530 8.42e-01 80 chr6:42185550-42185630 4.78e-02 32_[+1(1.00e-05)]_40 chr12:12420286-12420366 9.86e-01 80 chr1:76251929-76252009 3.23e-01 80 chrX:134654552-134654632 1.92e-01 80 chr2:39348137-39348217 8.79e-01 80 chr9:132816191-132816271 1.97e-02 17_[+2(2.28e-05)]_55 chr4:127877222-127877302 7.66e-01 80 chr16:68119296-68119376 9.18e-01 80 chr1:77685081-77685161 2.65e-02 1_[+1(3.55e-05)]_71 chr7:74489603-74489683 4.81e-03 4_[+1(1.00e-05)]_68 chr15:59949654-59949734 2.07e-01 80 chr5:90676929-90677009 3.28e-02 80 chr11:82868167-82868247 1.34e-02 63_[+1(1.53e-05)]_9 chr8:101734284-101734364 1.82e-02 54_[+3(5.80e-06)]_18 chr18:53257053-53257133 2.38e-02 20_[+5(1.34e-05)]_52 chr2:98262496-98262576 1.84e-01 80 chr16:89556937-89557017 7.56e-01 80 chr2:217363545-217363625 4.68e-01 80 chr19:8509841-8509921 5.68e-04 16_[+4(7.37e-05)]_14_[+2(1.37e-05)]_\ 34 chr5:90679099-90679179 5.81e-02 80 chr7:129074236-129074316 9.99e-01 80 chr7:22862425-22862505 5.32e-01 80 chr20:49575012-49575092 3.05e-01 80 chr6:43543876-43543956 9.94e-01 80 chr11:62414019-62414099 8.87e-02 47_[+1(1.00e-05)]_25 chr11:63953628-63953708 6.42e-01 80 chr1:162467592-162467672 4.56e-01 80 chr15:91446504-91446584 4.62e-01 80 chr10:5488540-5488620 9.33e-01 80 chr15:44829334-44829414 1.21e-01 55_[+2(5.60e-05)]_17 chr12:49075975-49076055 9.44e-01 80 chr16:69599797-69599877 8.04e-01 80 chr11:76155653-76155733 5.75e-02 50_[+1(1.00e-05)]_22 chr2:27805845-27805925 3.00e-01 80 chr5:173315318-173315398 3.03e-01 80 chr11:31531328-31531408 4.10e-02 [+2(9.19e-06)]_72 chr8:97247708-97247788 1.52e-04 45_[+1(1.53e-05)]_27 chr4:57333761-57333841 7.12e-02 37_[+2(9.19e-06)]_35 chr17:62502362-62502442 2.50e-04 32_[+5(5.78e-06)]_27_[+3(2.63e-05)]_\ 5 chr9:74980095-74980175 7.33e-01 80 chrX:24043354-24043434 9.16e-01 80 chr11:77531726-77531806 3.29e-02 29_[+1(1.53e-05)]_43 chr1:59165668-59165748 4.60e-01 80 chr10:28966379-28966459 5.00e-01 80 chr4:122618080-122618160 7.18e-01 80 chrX:39957142-39957222 9.98e-01 80 chr1:161284143-161284223 2.64e-02 49_[+2(9.19e-06)]_23 chr8:145688206-145688286 6.06e-02 22_[+1(1.00e-05)]_50 chr3:53916102-53916182 3.63e-01 80 chr15:69745119-69745199 3.07e-02 80 chr3:5021130-5021210 7.99e-01 80 chr6:43655470-43655550 1.31e-03 41_[+1(1.00e-05)]_31 chr15:52311408-52311488 1.77e-01 80 chr7:127032715-127032795 4.81e-01 80 chr20:1447447-1447527 1.07e-01 17_[+1(1.00e-05)]_55 chr12:95867879-95867959 8.08e-01 80 chr2:26101309-26101389 4.81e-02 3_[+1(2.02e-05)]_69 chr17:33895095-33895175 4.97e-01 80 chr19:13067990-13068070 6.04e-02 31_[+1(1.00e-05)]_41 chr16:31724587-31724667 2.57e-01 80 chr7:143078380-143078460 9.95e-01 80 chr7:17980084-17980164 1.19e-01 17_[+1(1.00e-05)]_55 chr5:36876722-36876802 9.93e-01 80 chr2:197664411-197664491 6.56e-01 80 chr11:63448933-63449013 5.90e-01 80 chr6:107780696-107780776 3.39e-02 56_[+1(2.02e-05)]_16 chr5:612448-612528 3.59e-02 25_[+2(2.28e-05)]_47 chrX:21857666-21857746 7.23e-01 80 chr19:13229049-13229129 1.29e-02 52_[+5(2.27e-05)]_20 chr3:152879964-152880044 9.90e-01 80 chr8:124286444-124286524 1.54e-02 49_[+1(1.00e-05)]_23 chr7:99716924-99717004 1.02e-01 39_[+1(1.00e-05)]_33 chr20:30795496-30795576 3.43e-01 30_[+1(9.41e-05)]_42 chr14:39639632-39639712 2.10e-01 80 chr1:76190413-76190493 1.41e-02 56_[+2(2.28e-05)]_16 chr17:72744726-72744806 8.81e-01 80 chr20:60641073-60641153 2.00e-03 80 chr11:5526807-5526887 2.68e-02 80 chr19:55897284-55897364 9.78e-01 80 chrX:48858603-48858683 1.90e-02 32_[+1(3.55e-05)]_40 chr1:94374951-94375031 2.01e-02 57_[+5(1.34e-05)]_15 chr11:62341266-62341346 3.90e-03 80 chr1:62190731-62190811 1.05e-02 56_[+1(1.00e-05)]_16 chr2:223725716-223725796 9.77e-01 80 chr12:58335370-58335450 9.96e-01 80 chr17:57696605-57696685 9.39e-01 80 chr1:40042427-40042507 7.72e-03 57_[+3(3.93e-06)]_15 chr1:161172128-161172208 6.47e-02 44_[+2(9.19e-06)]_28 chr7:12727219-12727299 2.13e-01 80 chr7:77325732-77325812 3.36e-03 51_[+2(1.37e-05)]_21 chr9:140095153-140095233 6.78e-01 80 chr8:67837730-67837810 3.43e-01 80 chr8:74205756-74205836 2.79e-04 3_[+4(8.21e-05)]_4_[+4(2.05e-06)]_\ 57 chr5:179159816-179159896 1.43e-03 27_[+2(9.19e-06)]_45 chr4:74088760-74088840 2.47e-02 80 chr14:103989125-10398920 9.30e-01 80 chr2:170683922-170684002 8.30e-01 80 chr3:150321072-150321152 2.21e-01 80 chr1:160232210-160232290 3.17e-02 18_[+1(1.00e-05)]_54 chr1:179846887-179846967 2.52e-01 80 chr12:7000154-7000234 3.44e-06 31_[+2(7.86e-05)]_[+5(1.56e-05)]_10_\ [+3(2.63e-05)]_15 chr8:95835481-95835561 7.05e-02 33_[+1(1.53e-05)]_39 chr19:18942713-18942793 9.90e-01 80 chr11:93474590-93474670 3.02e-01 80 chr18:60190041-60190121 9.75e-01 80 chr15:63449630-63449710 9.03e-01 80 chr3:44552063-44552143 7.52e-01 80 chr17:57970429-57970509 4.83e-01 80 chr7:72992863-72992943 7.21e-02 11_[+1(5.39e-05)]_61 chr11:64937659-64937739 1.57e-01 80 chr5:137514266-137514346 1.36e-02 32_[+1(1.00e-05)]_40 chr5:140079994-140080074 8.28e-03 48_[+2(9.19e-06)]_24 chr4:6642364-6642444 9.17e-02 44_[+1(3.82e-05)]_28 chr17:7387680-7387760 7.00e-02 42_[+2(6.47e-05)]_30 chr16:57481375-57481455 1.28e-02 39_[+2(1.37e-05)]_33 chr20:44563330-44563410 2.73e-02 13_[+2(9.19e-06)]_59 chr5:151138083-151138163 8.22e-01 80 chr3:154042227-154042307 1.19e-02 19_[+2(7.86e-05)]_53 chr17:28443842-28443922 1.66e-02 16_[+2(9.19e-06)]_56 chr14:90863325-90863405 7.37e-03 15_[+3(4.55e-06)]_57 chr5:40798193-40798273 2.15e-02 66_[+1(1.00e-05)]_6 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************