******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SUPT5H.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr18:75696888-75696968 1.0000 80 chr5:137803581-137803661 1.0000 80 chr5:170814864-170814944 1.0000 80 chr1:147400561-147400641 1.0000 80 chr19:48902387-48902467 1.0000 80 chr11:63449008-63449088 1.0000 80 chr9:131873269-131873349 1.0000 80 chr6:30783167-30783247 1.0000 80 chr22:19712796-19712876 1.0000 80 chr16:15667944-15668024 1.0000 80 chr8:82633415-82633495 1.0000 80 chr17:19015589-19015669 1.0000 80 chr1:148604879-148604959 1.0000 80 chr6:30843431-30843511 1.0000 80 chr17:19091380-19091460 1.0000 80 chr16:15670664-15670744 1.0000 80 chr3:52025445-52025525 1.0000 80 chr8:101734258-101734338 1.0000 80 chrX:118602455-118602535 1.0000 80 chr1:145826928-145827008 1.0000 80 chr20:48599578-48599658 1.0000 80 chr9:101836681-101836761 1.0000 80 chr17:5522659-5522739 1.0000 80 chr1:26362058-26362138 1.0000 80 chr7:99933759-99933839 1.0000 80 chr11:64937718-64937798 1.0000 80 chr2:108363295-108363375 1.0000 80 chr10:94589118-94589198 1.0000 80 chr11:62648420-62648500 1.0000 80 chr16:14726504-14726584 1.0000 80 chr7:77166073-77166153 1.0000 80 chr1:205091008-205091088 1.0000 80 chr1:149858486-149858566 1.0000 80 chr4:31999022-31999102 1.0000 80 chrX:41193420-41193500 1.0000 80 chr2:19547692-19547772 1.0000 80 chr19:46195085-46195165 1.0000 80 chr1:149514145-149514225 1.0000 80 chr11:5526797-5526877 1.0000 80 chr15:44084554-44084634 1.0000 80 chrX:12993262-12993342 1.0000 80 chr7:64466964-64467044 1.0000 80 chr2:156087846-156087926 1.0000 80 chr10:5855281-5855361 1.0000 80 chr1:92764438-92764518 1.0000 80 chr1:145443095-145443175 1.0000 80 chr1:173991687-173991767 1.0000 80 chr4:6675266-6675346 1.0000 80 chr4:39699799-39699879 1.0000 80 chr6:90348353-90348433 1.0000 80 chr3:49058847-49058927 1.0000 80 chr16:2955310-2955390 1.0000 80 chr19:14640452-14640532 1.0000 80 chr20:47662894-47662974 1.0000 80 chr10:70883569-70883649 1.0000 80 chr15:66874508-66874588 1.0000 80 chr18:75705573-75705653 1.0000 80 chr13:111367609-11136768 1.0000 80 chr10:43880392-43880472 1.0000 80 chr6:15211526-15211606 1.0000 80 chr14:70233874-70233954 1.0000 80 chr11:65222776-65222856 1.0000 80 chr4:127877238-127877318 1.0000 80 chr11:71823952-71824032 1.0000 80 chr1:43232955-43233035 1.0000 80 chr5:138882847-138882927 1.0000 80 chr19:39897568-39897648 1.0000 80 chr1:76251946-76252026 1.0000 80 chr11:75273666-75273746 1.0000 80 chr7:72298665-72298745 1.0000 80 chr14:20937588-20937668 1.0000 80 chr6:27870295-27870375 1.0000 80 chr16:15188030-15188110 1.0000 80 chr1:59165643-59165723 1.0000 80 chr3:169491032-169491112 1.0000 80 chr20:43104552-43104632 1.0000 80 chrX:153599493-153599573 1.0000 80 chr5:180708383-180708463 1.0000 80 chr11:61734986-61735066 1.0000 80 chr4:120133454-120133534 1.0000 80 chr6:31704190-31704270 1.0000 80 chr1:153756145-153756225 1.0000 80 chr7:66460417-66460497 1.0000 80 chr12:6976708-6976788 1.0000 80 chr19:44259283-44259363 1.0000 80 chr7:72300120-72300200 1.0000 80 chr5:141303478-141303558 1.0000 80 chr7:39761619-39761699 1.0000 80 chr8:74205769-74205849 1.0000 80 chr12:27091456-27091536 1.0000 80 chr5:137089920-137090000 1.0000 80 chr4:10118753-10118833 1.0000 80 chrX:71496979-71497059 1.0000 80 chr6:30583537-30583617 1.0000 80 chr14:21737492-21737572 1.0000 80 chr2:179315732-179315812 1.0000 80 chr6:31697828-31697908 1.0000 80 chr7:66057269-66057349 1.0000 80 chr1:202858124-202858204 1.0000 80 chr18:12884025-12884105 1.0000 80 chr11:34938210-34938290 1.0000 80 chr13:111365621-11136570 1.0000 80 chr6:95967153-95967233 1.0000 80 chr11:65268007-65268087 1.0000 80 chr5:132202354-132202434 1.0000 80 chr1:100828458-100828538 1.0000 80 chrX:153629745-153629825 1.0000 80 chr8:61429223-61429303 1.0000 80 chr6:158589412-158589492 1.0000 80 chrX:47053241-47053321 1.0000 80 chr3:180630472-180630552 1.0000 80 chr14:23398492-23398572 1.0000 80 chr19:1248628-1248708 1.0000 80 chr7:6617119-6617199 1.0000 80 chr5:68513735-68513815 1.0000 80 chr19:49956894-49956974 1.0000 80 chr1:63833373-63833453 1.0000 80 chr6:150070915-150070995 1.0000 80 chr7:65958723-65958803 1.0000 80 chr7:106649694-106649774 1.0000 80 chr1:68150891-68150971 1.0000 80 chr15:44092833-44092913 1.0000 80 chrX:23801306-23801386 1.0000 80 chr17:79995485-79995565 1.0000 80 chr20:2853900-2853980 1.0000 80 chr2:232329100-232329180 1.0000 80 chr7:5566341-5566421 1.0000 80 chr2:217363582-217363662 1.0000 80 chr19:2476132-2476212 1.0000 80 chr19:11925124-11925204 1.0000 80 chr10:32345201-32345281 1.0000 80 chr1:26963467-26963547 1.0000 80 chr1:15104095-15104175 1.0000 80 chr1:182808499-182808579 1.0000 80 chr8:61193868-61193948 1.0000 80 chrX:135962785-135962865 1.0000 80 chr11:62521528-62521608 1.0000 80 chr6:41041616-41041696 1.0000 80 chr22:31795622-31795702 1.0000 80 chr12:25348274-25348354 1.0000 80 chr7:10979661-10979741 1.0000 80 chr6:42713727-42713807 1.0000 80 chr12:49525050-49525130 1.0000 80 chr8:103876303-103876383 1.0000 80 chr20:5100515-5100595 1.0000 80 chr7:119547334-119547414 1.0000 80 chr3:129167070-129167150 1.0000 80 chr19:51161780-51161860 1.0000 80 chr16:74640905-74640985 1.0000 80 chr5:179105418-179105498 1.0000 80 chr15:41624698-41624778 1.0000 80 chr19:49497166-49497246 1.0000 80 chr14:102553289-10255336 1.0000 80 chr12:46766439-46766519 1.0000 80 chr4:76649879-76649959 1.0000 80 chr7:153110923-153111003 1.0000 80 chr1:155533058-155533138 1.0000 80 chr13:52027082-52027162 1.0000 80 chr1:235492015-235492095 1.0000 80 chr16:89307738-89307818 1.0000 80 chr17:29058736-29058816 1.0000 80 chr2:168797598-168797678 1.0000 80 chr17:62502310-62502390 1.0000 80 chr6:26104595-26104675 1.0000 80 chr17:34136510-34136590 1.0000 80 chr12:49075908-49075988 1.0000 80 chr12:53835559-53835639 1.0000 80 chr6:83902884-83902964 1.0000 80 chr1:43424446-43424526 1.0000 80 chr1:17222672-17222752 1.0000 80 chr1:151227237-151227317 1.0000 80 chr12:6643695-6643775 1.0000 80 chr17:11900948-11901028 1.0000 80 chr3:195270011-195270091 1.0000 80 chr19:38865440-38865520 1.0000 80 chr17:4634823-4634903 1.0000 80 chr11:59315089-59315169 1.0000 80 chr15:44038638-44038718 1.0000 80 chr17:27621037-27621117 1.0000 80 chr3:48646978-48647058 1.0000 80 chr15:69745171-69745251 1.0000 80 chr11:3402207-3402287 1.0000 80 chr1:113615831-113615911 1.0000 80 chr9:139557391-139557471 1.0000 80 chr9:115141966-115142046 1.0000 80 chr1:47069834-47069914 1.0000 80 chr6:36515102-36515182 1.0000 80 chr11:82868216-82868296 1.0000 80 chr13:99852853-99852933 1.0000 80 chr4:95373126-95373206 1.0000 80 chr17:75954435-75954515 1.0000 80 chr1:173446517-173446597 1.0000 80 chr6:99968944-99969024 1.0000 80 chr8:82598435-82598515 1.0000 80 chr4:17812251-17812331 1.0000 80 chr14:73525271-73525351 1.0000 80 chr16:89940075-89940155 1.0000 80 chr11:71640121-71640201 1.0000 80 chr19:41945673-41945753 1.0000 80 chr12:58335432-58335512 1.0000 80 chr1:226250446-226250526 1.0000 80 chr11:61582936-61583016 1.0000 80 chr7:142960585-142960665 1.0000 80 chr2:224588680-224588760 1.0000 80 chr2:60983430-60983510 1.0000 80 chrX:16789735-16789815 1.0000 80 chr19:7968305-7968385 1.0000 80 chr5:167913495-167913575 1.0000 80 chr1:100715285-100715365 1.0000 80 chr1:159895185-159895265 1.0000 80 chr11:27528260-27528340 1.0000 80 chr21:40721659-40721739 1.0000 80 chr5:95064907-95064987 1.0000 80 chr22:41842990-41843070 1.0000 80 chr10:103124619-10312469 1.0000 80 chr7:5632470-5632550 1.0000 80 chr14:50052996-50053076 1.0000 80 chr20:30193106-30193186 1.0000 80 chr10:120938227-12093830 1.0000 80 chr3:185655680-185655760 1.0000 80 chr19:55897307-55897387 1.0000 80 chr1:39492027-39492107 1.0000 80 chr5:180237315-180237395 1.0000 80 chr5:43313424-43313504 1.0000 80 chr6:99963188-99963268 1.0000 80 chr1:28836678-28836758 1.0000 80 chr7:123174909-123174989 1.0000 80 chr2:86422341-86422421 1.0000 80 chr3:197518142-197518222 1.0000 80 chr4:100010055-100010135 1.0000 80 chr19:11708322-11708402 1.0000 80 chr4:119199922-119200002 1.0000 80 chr1:40042357-40042437 1.0000 80 chr14:24682497-24682577 1.0000 80 chr2:192542862-192542942 1.0000 80 chr11:65196889-65196969 1.0000 80 chr11:126173790-12617387 1.0000 80 chr1:155826904-155826984 1.0000 80 chrX:48660668-48660748 1.0000 80 chr9:140135749-140135829 1.0000 80 chr16:67062746-67062826 1.0000 80 chr17:30677197-30677277 1.0000 80 chr17:28443847-28443927 1.0000 80 chr7:152160628-152160708 1.0000 80 chr15:44829356-44829436 1.0000 80 chr2:127066127-127066207 1.0000 80 chr3:170587894-170587974 1.0000 80 chr6:86352880-86352960 1.0000 80 chr4:174255404-174255484 1.0000 80 chr5:108084288-108084368 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SUPT5H/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SUPT5H.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.199 C 0.3 G 0.308 T 0.193 Background letter frequencies (from file dataset with add-one prior applied): A 0.199 C 0.3 G 0.308 T 0.193 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TYTTYTTT MEME-1 width = 8 sites = 19 llr = 183 E-value = 7.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTTYTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:34:11 probability G :2:::::: matrix T a5a76a99 bits 2.4 * * * 2.1 * * * 1.9 * * *** 1.7 * * *** Relative 1.4 * ** *** Entropy 1.2 * ****** (13.9 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus C CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:40042357-40042437 23 1.93e-06 CGTTTTCAGA TTTTTTTT ATCTTTTTCT chr4:100010055-100010135 47 1.93e-06 GCAGAACTCG TTTTTTTT GTCGGGAAAG chr4:17812251-17812331 17 4.92e-06 GAGGATCGCT TTTTCTTT CTAGCCTCAC chr15:44084554-44084634 57 4.92e-06 CTCCTTGCCC TTTTCTTT CCGTTCACCC chr1:17222672-17222752 11 7.91e-06 AAGGGTCATA TCTTTTTT TGTTTTGGTT chr10:94589118-94589198 37 1.09e-05 ctcctttctc tttctttt gcctattaag chr6:30843431-30843511 29 1.09e-05 ttcctttctc tttctttt gcctattaaa chr12:6643695-6643775 22 1.86e-05 GTCAGCCGCA TCTTCTTT TGCGTCGCCA chr7:153110923-153111003 34 1.86e-05 agggcaaaaa tcttcttt attgagccct chr1:145443095-145443175 62 1.86e-05 tgtatgtgtt tgtttttt ctacgctcag chr12:53835559-53835639 46 2.33e-05 TCCATAGGTT TTTCCTTT TCCCCTTGCT chr5:95064907-95064987 38 3.27e-05 gtccaagaac tctctttt ggagtcagga chr5:138882847-138882927 19 3.27e-05 atggaagctt tgttcttt tgctcttagc chr4:31999022-31999102 18 3.27e-05 gtgggaggtt tgttcttt tgctctttgc chr11:63449008-63449088 63 3.27e-05 CCGCCCCGTA TCTCTTTT CACCCTTCTC chr20:30193106-30193186 40 3.87e-05 TTCCACCTCA TTTTTTTC GCTTTGCCCA chr1:26963467-26963547 71 3.87e-05 gcccagctaa ttttttct at chr2:217363582-217363662 73 6.00e-05 TCTGTCCTTG TTTTCTTC chr17:30677197-30677277 68 6.93e-05 TTCTCCTGCT TCTTTTCT CCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:40042357-40042437 1.9e-06 22_[+1]_50 chr4:100010055-100010135 1.9e-06 46_[+1]_26 chr4:17812251-17812331 4.9e-06 16_[+1]_56 chr15:44084554-44084634 4.9e-06 56_[+1]_16 chr1:17222672-17222752 7.9e-06 10_[+1]_62 chr10:94589118-94589198 1.1e-05 36_[+1]_36 chr6:30843431-30843511 1.1e-05 28_[+1]_44 chr12:6643695-6643775 1.9e-05 21_[+1]_51 chr7:153110923-153111003 1.9e-05 33_[+1]_39 chr1:145443095-145443175 1.9e-05 61_[+1]_11 chr12:53835559-53835639 2.3e-05 45_[+1]_27 chr5:95064907-95064987 3.3e-05 37_[+1]_35 chr5:138882847-138882927 3.3e-05 18_[+1]_54 chr4:31999022-31999102 3.3e-05 17_[+1]_55 chr11:63449008-63449088 3.3e-05 62_[+1]_10 chr20:30193106-30193186 3.9e-05 39_[+1]_33 chr1:26963467-26963547 3.9e-05 70_[+1]_2 chr2:217363582-217363662 6e-05 72_[+1] chr17:30677197-30677277 6.9e-05 67_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTTYTTT width=8 seqs=19 chr1:40042357-40042437 ( 23) TTTTTTTT 1 chr4:100010055-100010135 ( 47) TTTTTTTT 1 chr4:17812251-17812331 ( 17) TTTTCTTT 1 chr15:44084554-44084634 ( 57) TTTTCTTT 1 chr1:17222672-17222752 ( 11) TCTTTTTT 1 chr10:94589118-94589198 ( 37) TTTCTTTT 1 chr6:30843431-30843511 ( 29) TTTCTTTT 1 chr12:6643695-6643775 ( 22) TCTTCTTT 1 chr7:153110923-153111003 ( 34) TCTTCTTT 1 chr1:145443095-145443175 ( 62) TGTTTTTT 1 chr12:53835559-53835639 ( 46) TTTCCTTT 1 chr5:95064907-95064987 ( 38) TCTCTTTT 1 chr5:138882847-138882927 ( 19) TGTTCTTT 1 chr4:31999022-31999102 ( 18) TGTTCTTT 1 chr11:63449008-63449088 ( 63) TCTCTTTT 1 chr20:30193106-30193186 ( 40) TTTTTTTC 1 chr1:26963467-26963547 ( 71) TTTTTTCT 1 chr2:217363582-217363662 ( 73) TTTTCTTC 1 chr17:30677197-30677277 ( 68) TCTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 7.3e-003 -1089 -1089 -1089 237 -1089 7 -97 145 -1089 -1089 -1089 237 -1089 -19 -1089 193 -1089 49 -1089 158 -1089 -1089 -1089 237 -1089 -151 -1089 221 -1089 -151 -1089 221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 7.3e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.315789 0.157895 0.526316 0.000000 0.000000 0.000000 1.000000 0.000000 0.263158 0.000000 0.736842 0.000000 0.421053 0.000000 0.578947 0.000000 0.000000 0.000000 1.000000 0.000000 0.105263 0.000000 0.894737 0.000000 0.105263 0.000000 0.894737 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTYTTT MEME-1 regular expression -------------------------------------------------------------------------------- T[TC]T[TC][TC]TTT -------------------------------------------------------------------------------- Time 4.98 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGGAARA MEME-2 width = 8 sites = 58 llr = 424 E-value = 6.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGGAARA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5a:38767 pos.-specific C :::::::: probability G 5:a72343 matrix T :::::::: bits 2.4 * 2.1 * 1.9 * 1.7 * Relative 1.4 ** * Entropy 1.2 ** ** * (10.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGGAAAA consensus A AGGGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGAARA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:103876303-103876383 51 5.89e-06 CAGAAGAAAA AAGGAAAA ACTGCGGCCG chr4:6675266-6675346 66 5.89e-06 aacccaccag aaggaaaa aactccg chr3:52025445-52025525 68 5.89e-06 aacccaccag aaggaaaa aactc chr8:82598435-82598515 32 1.88e-05 AGGGTGCGGT GAGGAAAA TAACGGTCTC chr7:39761619-39761699 58 1.88e-05 agagaagata aagaaaaa caactctttc chr10:5855281-5855361 54 1.88e-05 AAGAGAAAGA GAGGAAAA TGGAGCTGGC chr2:156087846-156087926 60 1.88e-05 gaaaaaaaaa aagaaaaa aTgaagaaga chr7:153110923-153111003 15 3.38e-05 gctgagaggt gagaaaaa gagggcaaaa chr1:149514145-149514225 61 3.38e-05 gcctcgccct gagaaaaa ccaccttcgt chr7:152160628-152160708 50 5.38e-05 GAAAAAAGGA GAGGAAGA GGAGCAACAC chr2:224588680-224588760 34 5.38e-05 taataggcag aagaaaga gaaaggagaa chr3:129167070-129167150 42 5.38e-05 taacaggcga aagaaaga gaagagctca chr2:179315732-179315812 52 5.38e-05 TCAGCGGCTG GAGGAAGA GCGGTGCGGA chr4:39699799-39699879 72 5.38e-05 ggaggcggtg gaggaaga g chr16:15670664-15670744 65 5.38e-05 taataggcaa aagaaaga gaaaaggg chr17:19091380-19091460 28 5.38e-05 cgaaaaccac gaggaaga gaggtagcgt chr1:226250446-226250526 54 8.12e-05 GCTCCAGCCG AAGGAGAA GGGGGGTAAG chr11:82868216-82868296 32 8.12e-05 TGTGTCTGTG GAGAAAGA AGCTTCTGTG chr16:15667944-15668024 41 8.12e-05 gtggaaggtg aaggagaa gcaaggcact chr5:43313424-43313504 56 1.01e-04 AGCGGCAGCA GAGGAAAG GGAGTGAGCC chr12:49075908-49075988 38 1.01e-04 CAAGAGCTTA GAGGAAAG AGCACCGCCA chr4:95373126-95373206 69 1.24e-04 CCGGTGGGAG AAGGGAAA GAAC chr12:46766439-46766519 26 1.24e-04 CCGCCGTGTC AAGGGAAA GGCGCGAGCG chr1:100828458-100828538 59 1.24e-04 gaggagtcca aagggaaa agcgggcctg chr11:65268007-65268087 35 1.24e-04 AGCTAGGAAG AAGGAAGG AGCGCTAACG chr1:145826928-145827008 12 1.24e-04 GGCGAAGTGT AAGGAAGG CTCCTGCCTC chrX:47053241-47053321 51 1.44e-04 ACGGCCGGGG GAGGAGAA GGCGGCAGCG chr7:123174909-123174989 20 1.68e-04 CGGTGTCggg aaggagga gcgcggcagg chr7:65958723-65958803 70 1.68e-04 AATAAGCTAC AAGGAGGA GCT chr9:140135749-140135829 66 2.19e-04 CCGCCATCAT GAGGGAAA TCGTGCA chr19:7968305-7968385 8 2.19e-04 CATCAGT GAGGAAGG CATTCCGAAG chr1:151227237-151227317 7 2.19e-04 GGGAGG GAGGAAGG TGGCAAGATG chr17:62502310-62502390 33 2.19e-04 GGCGGCAGCG GAGGAAGG ACACCGATGA chr19:1248628-1248708 62 2.19e-04 CCTGCGGGCC GAGGAAGG GTGCCCACTC chr5:137089920-137090000 5 2.19e-04 aaga gaggaagg gggagggaag chr11:75273666-75273746 67 2.19e-04 AGAAACAGAG GAGGAAGG AGATGG chr22:31795622-31795702 10 2.42e-04 GGGTGTGTG AAGGGAGA CAGTGTGGAG chr19:49497166-49497246 69 2.73e-04 gagtttgaga gaggagga tgct chr12:6643695-6643775 54 3.10e-04 AAGACGGGCG GAGAGAAA CCCGGGAGGC chr7:10979661-10979741 50 3.10e-04 TCCGACTGGA AAGGAGAG AACCGACCTA chr10:70883569-70883649 15 3.10e-04 GGACCCAGCC AAGGAGAG AGCCTCCAGA chr19:44259283-44259363 5 3.41e-04 GCAG GAGGGAGA GCGGCCCGGA chr8:74205769-74205849 30 3.73e-04 TCTGGAGATG GAGAAGGA TTCTCAAGAG chr11:71640121-71640201 69 4.04e-04 GTTGAGAGAC GAGGAGAG ACTC chr18:75705573-75705653 61 4.54e-04 ggcagaaggc aaggaggg gcaaatcata chr8:101734258-101734338 53 4.54e-04 CGCCGGGGAG AAGGGGAA GCACCGCCTC chr6:30843431-30843511 5 4.54e-04 acta gagagaga gctgttttcc chrX:16789735-16789815 10 4.93e-04 aaacaaata aaaaaaaa caaataatta chr13:111367609-11136768 22 4.93e-04 GGTGGGGGCA AAAAAAAA AATTGACCGC chr19:48902387-48902467 42 4.93e-04 AAGGCGAGTC GAGGGAAG GGTTAGGGGC chr1:39492027-39492107 17 5.08e-04 GCGGCGGCCA GAGAAGAG TCAAGGGCAC chrX:23801306-23801386 63 5.08e-04 CAGCCTGACT GAGAAGAG GACGCTCCCG chr19:55897307-55897387 20 5.44e-04 CGCCGCTGCG AAGGGAGG TGAGCGTTCG chr9:139557391-139557471 14 5.44e-04 GCACGGCTGC AAGGGAGG CTCCTGTGGA chr2:19547692-19547772 20 6.29e-04 TGATCCCCAA AAGCAAAA CACTGAACTC chr6:36515102-36515182 36 7.49e-04 GGTTACGGGT GAGGACAA CAGGAAGCGT chr2:108363295-108363375 57 7.49e-04 caaagagcga aagaacaa agcttccaca chr10:94589118-94589198 13 8.00e-04 tctctctcag gagaggaa gctgttctcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGAARA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:103876303-103876383 5.9e-06 50_[+2]_22 chr4:6675266-6675346 5.9e-06 65_[+2]_7 chr3:52025445-52025525 5.9e-06 67_[+2]_5 chr8:82598435-82598515 1.9e-05 31_[+2]_41 chr7:39761619-39761699 1.9e-05 57_[+2]_15 chr10:5855281-5855361 1.9e-05 53_[+2]_19 chr2:156087846-156087926 1.9e-05 59_[+2]_13 chr7:153110923-153111003 3.4e-05 14_[+2]_58 chr1:149514145-149514225 3.4e-05 60_[+2]_12 chr7:152160628-152160708 5.4e-05 49_[+2]_23 chr2:224588680-224588760 5.4e-05 33_[+2]_39 chr3:129167070-129167150 5.4e-05 41_[+2]_31 chr2:179315732-179315812 5.4e-05 51_[+2]_21 chr4:39699799-39699879 5.4e-05 71_[+2]_1 chr16:15670664-15670744 5.4e-05 64_[+2]_8 chr17:19091380-19091460 5.4e-05 27_[+2]_45 chr1:226250446-226250526 8.1e-05 53_[+2]_19 chr11:82868216-82868296 8.1e-05 31_[+2]_41 chr16:15667944-15668024 8.1e-05 40_[+2]_32 chr5:43313424-43313504 0.0001 55_[+2]_17 chr12:49075908-49075988 0.0001 37_[+2]_35 chr4:95373126-95373206 0.00012 68_[+2]_4 chr12:46766439-46766519 0.00012 25_[+2]_47 chr1:100828458-100828538 0.00012 58_[+2]_14 chr11:65268007-65268087 0.00012 34_[+2]_38 chr1:145826928-145827008 0.00012 11_[+2]_61 chrX:47053241-47053321 0.00014 50_[+2]_22 chr7:123174909-123174989 0.00017 19_[+2]_53 chr7:65958723-65958803 0.00017 69_[+2]_3 chr9:140135749-140135829 0.00022 65_[+2]_7 chr19:7968305-7968385 0.00022 7_[+2]_65 chr1:151227237-151227317 0.00022 6_[+2]_66 chr17:62502310-62502390 0.00022 32_[+2]_40 chr19:1248628-1248708 0.00022 61_[+2]_11 chr5:137089920-137090000 0.00022 4_[+2]_68 chr11:75273666-75273746 0.00022 66_[+2]_6 chr22:31795622-31795702 0.00024 9_[+2]_63 chr19:49497166-49497246 0.00027 68_[+2]_4 chr12:6643695-6643775 0.00031 53_[+2]_19 chr7:10979661-10979741 0.00031 49_[+2]_23 chr10:70883569-70883649 0.00031 14_[+2]_58 chr19:44259283-44259363 0.00034 4_[+2]_68 chr8:74205769-74205849 0.00037 29_[+2]_43 chr11:71640121-71640201 0.0004 68_[+2]_4 chr18:75705573-75705653 0.00045 60_[+2]_12 chr8:101734258-101734338 0.00045 52_[+2]_20 chr6:30843431-30843511 0.00045 4_[+2]_68 chrX:16789735-16789815 0.00049 9_[+2]_63 chr13:111367609-11136768 0.00049 21_[+2]_51 chr19:48902387-48902467 0.00049 41_[+2]_31 chr1:39492027-39492107 0.00051 16_[+2]_56 chrX:23801306-23801386 0.00051 62_[+2]_10 chr19:55897307-55897387 0.00054 19_[+2]_53 chr9:139557391-139557471 0.00054 13_[+2]_59 chr2:19547692-19547772 0.00063 19_[+2]_53 chr6:36515102-36515182 0.00075 35_[+2]_37 chr2:108363295-108363375 0.00075 56_[+2]_16 chr10:94589118-94589198 0.0008 12_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGAARA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGGAARA width=8 seqs=58 chr8:103876303-103876383 ( 51) AAGGAAAA 1 chr4:6675266-6675346 ( 66) AAGGAAAA 1 chr3:52025445-52025525 ( 68) AAGGAAAA 1 chr8:82598435-82598515 ( 32) GAGGAAAA 1 chr7:39761619-39761699 ( 58) AAGAAAAA 1 chr10:5855281-5855361 ( 54) GAGGAAAA 1 chr2:156087846-156087926 ( 60) AAGAAAAA 1 chr7:153110923-153111003 ( 15) GAGAAAAA 1 chr1:149514145-149514225 ( 61) GAGAAAAA 1 chr7:152160628-152160708 ( 50) GAGGAAGA 1 chr2:224588680-224588760 ( 34) AAGAAAGA 1 chr3:129167070-129167150 ( 42) AAGAAAGA 1 chr2:179315732-179315812 ( 52) GAGGAAGA 1 chr4:39699799-39699879 ( 72) GAGGAAGA 1 chr16:15670664-15670744 ( 65) AAGAAAGA 1 chr17:19091380-19091460 ( 28) GAGGAAGA 1 chr1:226250446-226250526 ( 54) AAGGAGAA 1 chr11:82868216-82868296 ( 32) GAGAAAGA 1 chr16:15667944-15668024 ( 41) AAGGAGAA 1 chr5:43313424-43313504 ( 56) GAGGAAAG 1 chr12:49075908-49075988 ( 38) GAGGAAAG 1 chr4:95373126-95373206 ( 69) AAGGGAAA 1 chr12:46766439-46766519 ( 26) AAGGGAAA 1 chr1:100828458-100828538 ( 59) AAGGGAAA 1 chr11:65268007-65268087 ( 35) AAGGAAGG 1 chr1:145826928-145827008 ( 12) AAGGAAGG 1 chrX:47053241-47053321 ( 51) GAGGAGAA 1 chr7:123174909-123174989 ( 20) AAGGAGGA 1 chr7:65958723-65958803 ( 70) AAGGAGGA 1 chr9:140135749-140135829 ( 66) GAGGGAAA 1 chr19:7968305-7968385 ( 8) GAGGAAGG 1 chr1:151227237-151227317 ( 7) GAGGAAGG 1 chr17:62502310-62502390 ( 33) GAGGAAGG 1 chr19:1248628-1248708 ( 62) GAGGAAGG 1 chr5:137089920-137090000 ( 5) GAGGAAGG 1 chr11:75273666-75273746 ( 67) GAGGAAGG 1 chr22:31795622-31795702 ( 10) AAGGGAGA 1 chr19:49497166-49497246 ( 69) GAGGAGGA 1 chr12:6643695-6643775 ( 54) GAGAGAAA 1 chr7:10979661-10979741 ( 50) AAGGAGAG 1 chr10:70883569-70883649 ( 15) AAGGAGAG 1 chr19:44259283-44259363 ( 5) GAGGGAGA 1 chr8:74205769-74205849 ( 30) GAGAAGGA 1 chr11:71640121-71640201 ( 69) GAGGAGAG 1 chr18:75705573-75705653 ( 61) AAGGAGGG 1 chr8:101734258-101734338 ( 53) AAGGGGAA 1 chr6:30843431-30843511 ( 5) GAGAGAGA 1 chrX:16789735-16789815 ( 10) AAAAAAAA 1 chr13:111367609-11136768 ( 22) AAAAAAAA 1 chr19:48902387-48902467 ( 42) GAGGGAAG 1 chr1:39492027-39492107 ( 17) GAGAAGAG 1 chrX:23801306-23801386 ( 63) GAGAAGAG 1 chr19:55897307-55897387 ( 20) AAGGGAGG 1 chr9:139557391-139557471 ( 14) AAGGGAGG 1 chr2:19547692-19547772 ( 20) AAGCAAAA 1 chr6:36515102-36515182 ( 36) GAGGACAA 1 chr2:108363295-108363375 ( 57) AAGAACAA 1 chr10:94589118-94589198 ( 13) GAGAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGAARA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.54487 E= 6.7e+001 128 -1250 75 -1250 233 -1250 -1250 -1250 -253 -1250 165 -1250 56 -412 116 -1250 197 -1250 -46 -1250 183 -312 -25 -1250 147 -1250 54 -1250 176 -1250 9 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGAARA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 6.7e+001 0.482759 0.000000 0.517241 0.000000 1.000000 0.000000 0.000000 0.000000 0.034483 0.000000 0.965517 0.000000 0.293103 0.017241 0.689655 0.000000 0.775862 0.000000 0.224138 0.000000 0.706897 0.034483 0.258621 0.000000 0.551724 0.000000 0.448276 0.000000 0.672414 0.000000 0.327586 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGAARA MEME-2 regular expression -------------------------------------------------------------------------------- [GA]AG[GA][AG][AG][AG][AG] -------------------------------------------------------------------------------- Time 8.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CSCCWTCT MEME-3 width = 8 sites = 18 llr = 165 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCCWTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2::6::: pos.-specific C a3aa::a: probability G :5:::::: matrix T :1::4a:a bits 2.4 * * 2.1 * * 1.9 * * 1.7 * ** *** Relative 1.4 * ****** Entropy 1.2 * ****** (13.2 bits) 0.9 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel CGCCATCT consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCWTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:170587894-170587974 57 1.85e-05 CACTCACCGG CGCCATCT TGCGAGTCGG chr19:55897307-55897387 53 1.85e-05 CTCGCGTGGT CGCCATCT CCGGCCCGCC chr10:120938227-12093830 70 1.85e-05 CTACAGCAGC CGCCATCT TCA chr11:27528260-27528340 34 1.85e-05 CCCCTAGCGC CGCCATCT TCTCCCTTAA chr3:48646978-48647058 70 1.85e-05 CCACGGACGC CGCCATCT TCC chr12:49075908-49075988 51 1.85e-05 GAAAGAGCAC CGCCATCT TACCTCAGGA chr15:41624698-41624778 56 1.85e-05 GCGGCTGAGC CGCCATCT TCCCGCAGCC chr14:23398492-23398572 73 1.85e-05 CCGCCATCGC CGCCATCT chr5:170814864-170814944 53 3.64e-05 TATCTCCGTC CGCCTTCT CTCCTACCTA chr6:15211526-15211606 56 5.44e-05 cacggtgaaa ccccatct ctactgaaaa chr11:62648420-62648500 29 6.64e-05 GGGGTTGAGC CACCATCT GACCGCAAGC chr6:86352880-86352960 56 8.39e-05 GGCCGCCTTT CCCCTTCT Ggctcgcacg chrX:153629745-153629825 16 8.39e-05 CATGCCCCCA CCCCTTCT AGAACCTGCA chr11:71823952-71824032 68 8.39e-05 TGCTTGTTAA CCCCTTCT GAAGA chr15:44084554-44084634 41 8.39e-05 AGCACCGAGC CCCCTTCT CCTTGCCCTT chr10:32345201-32345281 42 9.54e-05 GGAGAGTGGC CACCTTCT TCCTCCTCGC chr1:205091008-205091088 35 9.54e-05 CCGGCAACAA CACCTTCT CCCCGGCCGG chr17:29058736-29058816 53 1.18e-04 cccctctctc cTCCTTCT CCCCTCGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCWTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:170587894-170587974 1.8e-05 56_[+3]_16 chr19:55897307-55897387 1.8e-05 52_[+3]_20 chr10:120938227-12093830 1.8e-05 69_[+3]_3 chr11:27528260-27528340 1.8e-05 33_[+3]_39 chr3:48646978-48647058 1.8e-05 69_[+3]_3 chr12:49075908-49075988 1.8e-05 50_[+3]_22 chr15:41624698-41624778 1.8e-05 55_[+3]_17 chr14:23398492-23398572 1.8e-05 72_[+3] chr5:170814864-170814944 3.6e-05 52_[+3]_20 chr6:15211526-15211606 5.4e-05 55_[+3]_17 chr11:62648420-62648500 6.6e-05 28_[+3]_44 chr6:86352880-86352960 8.4e-05 55_[+3]_17 chrX:153629745-153629825 8.4e-05 15_[+3]_57 chr11:71823952-71824032 8.4e-05 67_[+3]_5 chr15:44084554-44084634 8.4e-05 40_[+3]_32 chr10:32345201-32345281 9.5e-05 41_[+3]_31 chr1:205091008-205091088 9.5e-05 34_[+3]_38 chr17:29058736-29058816 0.00012 52_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCWTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCCWTCT width=8 seqs=18 chr3:170587894-170587974 ( 57) CGCCATCT 1 chr19:55897307-55897387 ( 53) CGCCATCT 1 chr10:120938227-12093830 ( 70) CGCCATCT 1 chr11:27528260-27528340 ( 34) CGCCATCT 1 chr3:48646978-48647058 ( 70) CGCCATCT 1 chr12:49075908-49075988 ( 51) CGCCATCT 1 chr15:41624698-41624778 ( 56) CGCCATCT 1 chr14:23398492-23398572 ( 73) CGCCATCT 1 chr5:170814864-170814944 ( 53) CGCCTTCT 1 chr6:15211526-15211606 ( 56) CCCCATCT 1 chr11:62648420-62648500 ( 29) CACCATCT 1 chr6:86352880-86352960 ( 56) CCCCTTCT 1 chrX:153629745-153629825 ( 16) CCCCTTCT 1 chr11:71823952-71824032 ( 68) CCCCTTCT 1 chr15:44084554-44084634 ( 41) CCCCTTCT 1 chr10:32345201-32345281 ( 42) CACCTTCT 1 chr1:205091008-205091088 ( 35) CACCTTCT 1 chr17:29058736-29058816 ( 53) CTCCTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCWTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 3.7e+002 -1081 174 -1081 -1081 -25 -11 70 -179 -1081 174 -1081 -1081 -1081 174 -1081 -1081 148 -1081 -1081 120 -1081 -1081 -1081 237 -1081 174 -1081 -1081 -1081 -1081 -1081 237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCWTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.7e+002 0.000000 1.000000 0.000000 0.000000 0.166667 0.277778 0.500000 0.055556 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.000000 0.000000 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCWTCT MEME-3 regular expression -------------------------------------------------------------------------------- C[GC]CC[AT]TCT -------------------------------------------------------------------------------- Time 12.45 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGRGG MEME-4 width = 8 sites = 38 llr = 300 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGRGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::323 pos.-specific C ::a::::: probability G 9a::a687 matrix T 1::a:2:: bits 2.4 * 2.1 * 1.9 * 1.7 **** Relative 1.4 **** Entropy 1.2 ***** (11.4 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGGGG consensus AAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGRGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:28443847-28443927 60 4.94e-05 GTTAGGGTCA GGCTGGGG GATGAGAAAC chr7:123174909-123174989 62 4.94e-05 gctagaggcg ggctgggg gccggggtct chr2:168797598-168797678 31 4.94e-05 agttccacat ggctgggg aggcctcaga chr16:89307738-89307818 66 4.94e-05 gggcagccgg ggctgggg gaccgac chr10:32345201-32345281 9 4.94e-05 ACTGCGGG GGCTGGGG AGGTTCTGGG chr6:158589412-158589492 37 4.94e-05 GCGTCCGAGC GGCTGGGG AAAGTGGGGT chr6:31697828-31697908 39 4.94e-05 CTGTGATCTC GGCTGGGG CCCCACCCCC chr11:75273666-75273746 25 4.94e-05 GTGTAAAGGG GGCTGGGG GCAGAGAGCA chr18:75705573-75705653 28 4.94e-05 agtttcacgt ggctgggg aggcctcaca chr20:47662894-47662974 29 4.94e-05 TACGGTCCGC GGCTGGGG TTCCCTCCTC chr2:127066127-127066207 73 8.14e-05 cactttggga ggctgagg chr19:7968305-7968385 57 8.14e-05 AAAGCGAGGA GGCTGAGG CTGCACCGCC chr16:89940075-89940155 23 8.14e-05 GCCCTCCGGA GGCTGAGG GGGGAACAGC chr11:59315089-59315169 28 8.14e-05 ctactgagga ggctgagg caggagaatc chr17:5522659-5522739 2 8.14e-05 t ggctgagg agacctcagg chr1:68150891-68150971 10 1.13e-04 GTAGGCAGT GGCTGGGA GGCAGCGGCC chr10:5855281-5855361 9 1.13e-04 CCCTACGA GGCTGGGA GGCGCTCTTG chr19:48902387-48902467 57 1.13e-04 AAGGGTTAGG GGCTGGGA ACGAAAAGGG chr21:40721659-40721739 32 1.97e-04 gtgtcgtcca ggctggag tgcagtggtg chr1:159895185-159895265 65 1.97e-04 CGTTCAAGCG GGCTGGAG AGCGGCGC chr17:34136510-34136590 31 1.97e-04 GTTCTCGGCG GGCTGTGG GGCCTCCGCG chr7:153110923-153111003 4 1.97e-04 taa ggctgaga ggtgagaaaa chr20:5100515-5100595 37 1.97e-04 CGCGACGACC GGCTGAGA CCTAGAAAGA chr7:6617119-6617199 29 1.97e-04 GCCTCCGCGG GGCTGTGG GAAGCTTGGG chr5:180237315-180237395 49 2.17e-04 CTGTTCACAG GGCTGAAG AACAGGTGTG chr8:61429223-61429303 14 2.17e-04 CCCACCGCAG GGCTGAAG GCGACGGAAC chr11:71640121-71640201 25 2.89e-04 GAGGTGGTGC TGCTGGGG AACGGGAGCT chr11:82868216-82868296 52 2.89e-04 CTTCTGTGGC GGCTGGAA GTGGACGGAG chr7:119547334-119547414 23 2.89e-04 agtttgacat ggctggaa aggcctcaga chr11:34938210-34938290 14 2.89e-04 CTGGAGGCTG GGCTGTGA TCCGCGGCTG chr1:153756145-153756225 14 2.89e-04 TCTCGGGCGC TGCTGGGG GCGGAAAGGC chr3:169491032-169491112 5 2.89e-04 GGCA TGCTGGGG AGTGGGTCTC chr16:14726504-14726584 72 2.89e-04 TCACCCCTTG GGCTGTGA C chr8:82633415-82633495 26 2.89e-04 CGGGGATGGG GGCTGGAA GCTCCCGGAT chr19:41945673-41945753 63 3.42e-04 TGAATGCGGA GGCTGTAG AGCGGACTTC chr4:10118753-10118833 24 3.42e-04 GGAGAAGCTG GGCTGTAG GAAGTTTATT chr12:27091456-27091536 69 3.42e-04 TGCGTCTGCT TGCTGAGG AGGC chr5:180708383-180708463 1 3.42e-04 . tgctgagg aggcctcacg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGRGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:28443847-28443927 4.9e-05 59_[+4]_13 chr7:123174909-123174989 4.9e-05 61_[+4]_11 chr2:168797598-168797678 4.9e-05 30_[+4]_42 chr16:89307738-89307818 4.9e-05 65_[+4]_7 chr10:32345201-32345281 4.9e-05 8_[+4]_64 chr6:158589412-158589492 4.9e-05 36_[+4]_36 chr6:31697828-31697908 4.9e-05 38_[+4]_34 chr11:75273666-75273746 4.9e-05 24_[+4]_48 chr18:75705573-75705653 4.9e-05 27_[+4]_45 chr20:47662894-47662974 4.9e-05 28_[+4]_44 chr2:127066127-127066207 8.1e-05 72_[+4] chr19:7968305-7968385 8.1e-05 56_[+4]_16 chr16:89940075-89940155 8.1e-05 22_[+4]_50 chr11:59315089-59315169 8.1e-05 27_[+4]_45 chr17:5522659-5522739 8.1e-05 1_[+4]_71 chr1:68150891-68150971 0.00011 9_[+4]_63 chr10:5855281-5855361 0.00011 8_[+4]_64 chr19:48902387-48902467 0.00011 56_[+4]_16 chr21:40721659-40721739 0.0002 31_[+4]_41 chr1:159895185-159895265 0.0002 64_[+4]_8 chr17:34136510-34136590 0.0002 30_[+4]_42 chr7:153110923-153111003 0.0002 3_[+4]_69 chr20:5100515-5100595 0.0002 36_[+4]_36 chr7:6617119-6617199 0.0002 28_[+4]_44 chr5:180237315-180237395 0.00022 48_[+4]_24 chr8:61429223-61429303 0.00022 13_[+4]_59 chr11:71640121-71640201 0.00029 24_[+4]_48 chr11:82868216-82868296 0.00029 51_[+4]_21 chr7:119547334-119547414 0.00029 22_[+4]_50 chr11:34938210-34938290 0.00029 13_[+4]_59 chr1:153756145-153756225 0.00029 13_[+4]_59 chr3:169491032-169491112 0.00029 4_[+4]_68 chr16:14726504-14726584 0.00029 71_[+4]_1 chr8:82633415-82633495 0.00029 25_[+4]_47 chr19:41945673-41945753 0.00034 62_[+4]_10 chr4:10118753-10118833 0.00034 23_[+4]_49 chr12:27091456-27091536 0.00034 68_[+4]_4 chr5:180708383-180708463 0.00034 [+4]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGRGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGRGG width=8 seqs=38 chr17:28443847-28443927 ( 60) GGCTGGGG 1 chr7:123174909-123174989 ( 62) GGCTGGGG 1 chr2:168797598-168797678 ( 31) GGCTGGGG 1 chr16:89307738-89307818 ( 66) GGCTGGGG 1 chr10:32345201-32345281 ( 9) GGCTGGGG 1 chr6:158589412-158589492 ( 37) GGCTGGGG 1 chr6:31697828-31697908 ( 39) GGCTGGGG 1 chr11:75273666-75273746 ( 25) GGCTGGGG 1 chr18:75705573-75705653 ( 28) GGCTGGGG 1 chr20:47662894-47662974 ( 29) GGCTGGGG 1 chr2:127066127-127066207 ( 73) GGCTGAGG 1 chr19:7968305-7968385 ( 57) GGCTGAGG 1 chr16:89940075-89940155 ( 23) GGCTGAGG 1 chr11:59315089-59315169 ( 28) GGCTGAGG 1 chr17:5522659-5522739 ( 2) GGCTGAGG 1 chr1:68150891-68150971 ( 10) GGCTGGGA 1 chr10:5855281-5855361 ( 9) GGCTGGGA 1 chr19:48902387-48902467 ( 57) GGCTGGGA 1 chr21:40721659-40721739 ( 32) GGCTGGAG 1 chr1:159895185-159895265 ( 65) GGCTGGAG 1 chr17:34136510-34136590 ( 31) GGCTGTGG 1 chr7:153110923-153111003 ( 4) GGCTGAGA 1 chr20:5100515-5100595 ( 37) GGCTGAGA 1 chr7:6617119-6617199 ( 29) GGCTGTGG 1 chr5:180237315-180237395 ( 49) GGCTGAAG 1 chr8:61429223-61429303 ( 14) GGCTGAAG 1 chr11:71640121-71640201 ( 25) TGCTGGGG 1 chr11:82868216-82868296 ( 52) GGCTGGAA 1 chr7:119547334-119547414 ( 23) GGCTGGAA 1 chr11:34938210-34938290 ( 14) GGCTGTGA 1 chr1:153756145-153756225 ( 14) TGCTGGGG 1 chr3:169491032-169491112 ( 5) TGCTGGGG 1 chr16:14726504-14726584 ( 72) GGCTGTGA 1 chr8:82633415-82633495 ( 26) GGCTGGAA 1 chr19:41945673-41945753 ( 63) GGCTGTAG 1 chr4:10118753-10118833 ( 24) GGCTGTAG 1 chr12:27091456-27091536 ( 69) TGCTGAGG 1 chr5:180708383-180708463 ( 1) TGCTGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGRGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09987 E= 2.9e+003 -1189 -1189 149 -55 -1189 -1189 170 -1189 -1189 174 -1189 -1189 -1189 -1189 -1189 237 -1189 -1189 170 -1189 54 -1189 84 -29 25 -1189 131 -1189 41 -1189 126 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGRGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.9e+003 0.000000 0.000000 0.868421 0.131579 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.289474 0.000000 0.552632 0.157895 0.236842 0.000000 0.763158 0.000000 0.263158 0.000000 0.736842 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGRGG MEME-4 regular expression -------------------------------------------------------------------------------- GGCTG[GA][GA][GA] -------------------------------------------------------------------------------- Time 16.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TATATTTT MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATATTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:::: pos.-specific C :::::::: probability G :::::::: matrix T a:a:aaaa bits 2.4 ******** 2.1 ******** 1.9 ******** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATATTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:2476132-2476212 64 2.05e-06 GACTTTGCAA TATATTTT TCCGCCTTT chr6:30583537-30583617 63 2.05e-06 GCACTAAGAT TATATTTT GTCCTAAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2476132-2476212 2e-06 63_[+5]_9 chr6:30583537-30583617 2e-06 62_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATATTTT width=8 seqs=2 chr19:2476132-2476212 ( 64) TATATTTT 1 chr6:30583537-30583617 ( 63) TATATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.6e+003 -765 -765 -765 237 233 -765 -765 -765 -765 -765 -765 237 233 -765 -765 -765 -765 -765 -765 237 -765 -765 -765 237 -765 -765 -765 237 -765 -765 -765 237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATTTT MEME-5 regular expression -------------------------------------------------------------------------------- TATATTTT -------------------------------------------------------------------------------- Time 19.63 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:75696888-75696968 5.39e-02 52_[+5(6.99e-05)]_20 chr5:137803581-137803661 7.01e-01 80 chr5:170814864-170814944 1.04e-02 52_[+3(3.64e-05)]_20 chr1:147400561-147400641 2.76e-01 80 chr19:48902387-48902467 7.09e-02 80 chr11:63449008-63449088 1.16e-02 62_[+1(3.27e-05)]_10 chr9:131873269-131873349 1.01e-01 80 chr6:30783167-30783247 7.07e-01 80 chr22:19712796-19712876 4.87e-01 80 chr16:15667944-15668024 6.93e-02 40_[+2(8.12e-05)]_32 chr8:82633415-82633495 1.61e-01 80 chr17:19015589-19015669 5.42e-01 80 chr1:148604879-148604959 6.89e-01 80 chr6:30843431-30843511 8.11e-04 17_[+1(2.33e-05)]_3_[+1(1.09e-05)]_\ 44 chr17:19091380-19091460 7.75e-03 27_[+2(5.38e-05)]_45 chr16:15670664-15670744 3.19e-01 64_[+2(5.38e-05)]_8 chr3:52025445-52025525 4.60e-02 67_[+2(5.89e-06)]_5 chr8:101734258-101734338 2.35e-01 80 chrX:118602455-118602535 3.25e-01 80 chr1:145826928-145827008 7.88e-02 80 chr20:48599578-48599658 6.33e-01 80 chr9:101836681-101836761 5.83e-02 80 chr17:5522659-5522739 1.13e-01 1_[+4(8.14e-05)]_71 chr1:26362058-26362138 1.81e-01 80 chr7:99933759-99933839 9.60e-01 80 chr11:64937718-64937798 5.41e-01 80 chr2:108363295-108363375 5.31e-01 80 chr10:94589118-94589198 1.20e-03 25_[+1(5.07e-05)]_3_[+1(1.09e-05)]_\ 36 chr11:62648420-62648500 2.72e-01 28_[+3(6.64e-05)]_44 chr16:14726504-14726584 6.84e-02 80 chr7:77166073-77166153 9.36e-01 80 chr1:205091008-205091088 1.11e-01 34_[+3(9.54e-05)]_38 chr1:149858486-149858566 6.81e-01 80 chr4:31999022-31999102 1.12e-01 17_[+1(3.27e-05)]_55 chrX:41193420-41193500 6.77e-01 80 chr2:19547692-19547772 4.95e-01 80 chr19:46195085-46195165 9.83e-01 80 chr1:149514145-149514225 4.43e-02 60_[+2(3.38e-05)]_12 chr11:5526797-5526877 5.35e-01 80 chr15:44084554-44084634 2.01e-03 40_[+3(8.39e-05)]_8_[+1(4.92e-06)]_\ 16 chrX:12993262-12993342 7.76e-01 80 chr7:64466964-64467044 7.57e-01 80 chr2:156087846-156087926 6.66e-02 47_[+2(1.88e-05)]_4_[+2(1.88e-05)]_\ 13 chr10:5855281-5855361 1.00e-02 32_[+2(6.29e-05)]_5_[+2(8.12e-05)]_\ [+2(1.88e-05)]_19 chr1:92764438-92764518 5.57e-01 80 chr1:145443095-145443175 4.66e-02 61_[+1(1.86e-05)]_11 chr1:173991687-173991767 8.83e-01 80 chr4:6675266-6675346 4.59e-02 65_[+2(5.89e-06)]_7 chr4:39699799-39699879 9.34e-02 71_[+2(5.38e-05)]_1 chr6:90348353-90348433 3.27e-01 80 chr3:49058847-49058927 6.45e-01 80 chr16:2955310-2955390 8.74e-01 80 chr19:14640452-14640532 9.85e-01 80 chr20:47662894-47662974 7.88e-02 28_[+4(4.94e-05)]_44 chr10:70883569-70883649 2.59e-02 80 chr15:66874508-66874588 1.79e-01 80 chr18:75705573-75705653 2.29e-02 27_[+4(4.94e-05)]_45 chr13:111367609-11136768 1.95e-01 80 chr10:43880392-43880472 3.10e-01 80 chr6:15211526-15211606 8.03e-02 55_[+3(5.44e-05)]_17 chr14:70233874-70233954 9.80e-01 80 chr11:65222776-65222856 1.77e-01 80 chr4:127877238-127877318 4.32e-01 80 chr11:71823952-71824032 3.57e-02 67_[+3(8.39e-05)]_5 chr1:43232955-43233035 8.88e-01 80 chr5:138882847-138882927 4.16e-02 18_[+1(3.27e-05)]_54 chr19:39897568-39897648 8.18e-01 80 chr1:76251946-76252026 9.12e-01 80 chr11:75273666-75273746 3.17e-02 24_[+4(4.94e-05)]_48 chr7:72298665-72298745 9.99e-01 80 chr14:20937588-20937668 1.00e+00 80 chr6:27870295-27870375 3.37e-01 80 chr16:15188030-15188110 2.25e-01 80 chr1:59165643-59165723 3.62e-01 80 chr3:169491032-169491112 3.42e-01 80 chr20:43104552-43104632 9.99e-01 80 chrX:153599493-153599573 4.19e-01 80 chr5:180708383-180708463 2.99e-01 80 chr11:61734986-61735066 7.71e-01 80 chr4:120133454-120133534 6.18e-01 80 chr6:31704190-31704270 9.99e-01 80 chr1:153756145-153756225 4.49e-01 80 chr7:66460417-66460497 8.25e-01 80 chr12:6976708-6976788 2.35e-01 80 chr19:44259283-44259363 1.69e-01 80 chr7:72300120-72300200 6.34e-01 80 chr5:141303478-141303558 4.66e-01 80 chr7:39761619-39761699 1.25e-02 57_[+2(1.88e-05)]_15 chr8:74205769-74205849 2.99e-01 80 chr12:27091456-27091536 2.42e-01 80 chr5:137089920-137090000 3.12e-01 80 chr4:10118753-10118833 6.91e-02 80 chrX:71496979-71497059 6.50e-01 80 chr6:30583537-30583617 4.21e-03 62_[+5(2.05e-06)]_10 chr14:21737492-21737572 1.42e-01 80 chr2:179315732-179315812 1.81e-02 51_[+2(5.38e-05)]_21 chr6:31697828-31697908 5.21e-02 38_[+4(4.94e-05)]_34 chr7:66057269-66057349 8.30e-01 80 chr1:202858124-202858204 4.64e-01 80 chr18:12884025-12884105 9.49e-01 80 chr11:34938210-34938290 5.52e-02 80 chr13:111365621-11136570 7.45e-01 80 chr6:95967153-95967233 6.07e-01 80 chr11:65268007-65268087 3.00e-01 80 chr5:132202354-132202434 3.89e-01 80 chr1:100828458-100828538 1.99e-02 80 chrX:153629745-153629825 1.88e-01 15_[+3(8.39e-05)]_57 chr8:61429223-61429303 2.59e-01 80 chr6:158589412-158589492 2.06e-01 36_[+4(4.94e-05)]_36 chrX:47053241-47053321 9.36e-02 80 chr3:180630472-180630552 8.58e-01 80 chr14:23398492-23398572 1.65e-01 72_[+3(1.85e-05)] chr19:1248628-1248708 1.60e-01 80 chr7:6617119-6617199 2.25e-02 80 chr5:68513735-68513815 7.44e-01 80 chr19:49956894-49956974 8.48e-01 80 chr1:63833373-63833453 9.24e-01 80 chr6:150070915-150070995 6.14e-01 80 chr7:65958723-65958803 3.11e-01 80 chr7:106649694-106649774 8.92e-01 80 chr1:68150891-68150971 3.38e-01 80 chr15:44092833-44092913 9.30e-01 80 chrX:23801306-23801386 1.85e-01 80 chr17:79995485-79995565 6.82e-01 80 chr20:2853900-2853980 5.53e-01 80 chr2:232329100-232329180 5.10e-01 80 chr7:5566341-5566421 9.55e-01 80 chr2:217363582-217363662 8.45e-02 72_[+1(6.00e-05)] chr19:2476132-2476212 6.27e-03 63_[+5(2.05e-06)]_9 chr19:11925124-11925204 2.77e-01 80 chr10:32345201-32345281 1.46e-03 8_[+4(4.94e-05)]_25_[+3(9.54e-05)]_\ 31 chr1:26963467-26963547 1.78e-02 70_[+1(3.87e-05)]_2 chr1:15104095-15104175 3.43e-01 80 chr1:182808499-182808579 4.80e-01 80 chr8:61193868-61193948 9.09e-01 80 chrX:135962785-135962865 9.91e-01 80 chr11:62521528-62521608 3.55e-01 80 chr6:41041616-41041696 3.61e-02 80 chr22:31795622-31795702 4.78e-01 80 chr12:25348274-25348354 2.22e-01 80 chr7:10979661-10979741 1.94e-01 80 chr6:42713727-42713807 4.83e-01 80 chr12:49525050-49525130 5.32e-01 80 chr8:103876303-103876383 2.50e-02 50_[+2(5.89e-06)]_22 chr20:5100515-5100595 1.78e-01 80 chr7:119547334-119547414 3.12e-02 80 chr3:129167070-129167150 9.06e-02 41_[+2(5.38e-05)]_31 chr19:51161780-51161860 8.28e-01 80 chr16:74640905-74640985 9.14e-01 80 chr5:179105418-179105498 9.94e-01 80 chr15:41624698-41624778 3.29e-02 55_[+3(1.85e-05)]_17 chr19:49497166-49497246 1.64e-01 80 chr14:102553289-10255336 9.50e-01 80 chr12:46766439-46766519 1.50e-01 80 chr4:76649879-76649959 2.80e-02 80 chr7:153110923-153111003 7.31e-05 14_[+2(3.38e-05)]_11_[+1(1.86e-05)]_\ 39 chr1:155533058-155533138 8.97e-01 80 chr13:52027082-52027162 4.34e-01 80 chr1:235492015-235492095 9.10e-01 80 chr16:89307738-89307818 7.11e-02 65_[+4(4.94e-05)]_7 chr17:29058736-29058816 6.04e-02 80 chr2:168797598-168797678 6.27e-02 30_[+4(4.94e-05)]_42 chr17:62502310-62502390 3.46e-01 80 chr6:26104595-26104675 7.41e-01 80 chr17:34136510-34136590 1.92e-01 80 chr12:49075908-49075988 6.60e-03 50_[+3(1.85e-05)]_22 chr12:53835559-53835639 9.15e-03 45_[+1(2.33e-05)]_27 chr6:83902884-83902964 7.66e-01 80 chr1:43424446-43424526 6.97e-01 80 chr1:17222672-17222752 2.87e-04 10_[+1(7.91e-06)]_62 chr1:151227237-151227317 2.03e-01 80 chr12:6643695-6643775 3.02e-04 21_[+1(1.86e-05)]_51 chr17:11900948-11901028 4.90e-01 80 chr3:195270011-195270091 9.88e-01 80 chr19:38865440-38865520 4.19e-01 80 chr17:4634823-4634903 4.55e-01 80 chr11:59315089-59315169 1.16e-01 27_[+4(8.14e-05)]_45 chr15:44038638-44038718 9.44e-01 80 chr17:27621037-27621117 1.05e-02 61_[+4(8.14e-05)]_11 chr3:48646978-48647058 1.04e-01 69_[+3(1.85e-05)]_3 chr15:69745171-69745251 4.41e-01 80 chr11:3402207-3402287 1.23e-01 80 chr1:113615831-113615911 8.18e-01 80 chr9:139557391-139557471 3.90e-01 80 chr9:115141966-115142046 9.16e-01 80 chr1:47069834-47069914 5.76e-01 80 chr6:36515102-36515182 3.68e-01 80 chr11:82868216-82868296 1.30e-03 31_[+2(8.12e-05)]_41 chr13:99852853-99852933 3.26e-01 80 chr4:95373126-95373206 3.38e-01 80 chr17:75954435-75954515 9.97e-01 80 chr1:173446517-173446597 5.34e-01 80 chr6:99968944-99969024 9.78e-01 80 chr8:82598435-82598515 5.17e-02 31_[+2(1.88e-05)]_41 chr4:17812251-17812331 2.82e-02 16_[+1(4.92e-06)]_56 chr14:73525271-73525351 4.46e-01 80 chr16:89940075-89940155 3.65e-02 22_[+4(8.14e-05)]_50 chr11:71640121-71640201 1.32e-01 80 chr19:41945673-41945753 1.26e-01 80 chr12:58335432-58335512 8.43e-01 80 chr1:226250446-226250526 1.42e-01 53_[+2(8.12e-05)]_19 chr11:61582936-61583016 9.53e-01 80 chr7:142960585-142960665 3.36e-01 80 chr2:224588680-224588760 5.44e-02 33_[+2(5.38e-05)]_2_[+2(8.12e-05)]_\ 29 chr2:60983430-60983510 6.11e-01 80 chrX:16789735-16789815 3.45e-01 80 chr19:7968305-7968385 4.29e-02 56_[+4(8.14e-05)]_16 chr5:167913495-167913575 7.97e-01 80 chr1:100715285-100715365 7.39e-01 80 chr1:159895185-159895265 1.92e-01 80 chr11:27528260-27528340 8.81e-03 33_[+3(1.85e-05)]_39 chr21:40721659-40721739 2.29e-01 80 chr5:95064907-95064987 4.36e-03 37_[+1(3.27e-05)]_35 chr22:41842990-41843070 1.04e-01 80 chr10:103124619-10312469 6.97e-01 80 chr7:5632470-5632550 8.16e-01 80 chr14:50052996-50053076 1.43e-01 80 chr20:30193106-30193186 1.47e-02 39_[+1(3.87e-05)]_33 chr10:120938227-12093830 1.61e-01 69_[+3(1.85e-05)]_3 chr3:185655680-185655760 6.85e-01 80 chr19:55897307-55897387 6.35e-03 52_[+3(1.85e-05)]_20 chr1:39492027-39492107 4.93e-01 80 chr5:180237315-180237395 8.39e-02 80 chr5:43313424-43313504 1.62e-01 80 chr6:99963188-99963268 2.79e-01 80 chr1:28836678-28836758 3.60e-01 80 chr7:123174909-123174989 2.50e-02 61_[+4(4.94e-05)]_11 chr2:86422341-86422421 4.91e-01 80 chr3:197518142-197518222 9.26e-01 80 chr4:100010055-100010135 1.50e-03 46_[+1(1.93e-06)]_26 chr19:11708322-11708402 7.56e-01 80 chr4:119199922-119200002 2.77e-01 80 chr1:40042357-40042437 6.87e-05 22_[+1(1.93e-06)]_9_[+1(7.91e-06)]_\ 33 chr14:24682497-24682577 3.53e-01 80 chr2:192542862-192542942 6.50e-01 80 chr11:65196889-65196969 4.37e-01 80 chr11:126173790-12617387 9.26e-01 80 chr1:155826904-155826984 7.79e-01 80 chrX:48660668-48660748 4.16e-01 80 chr9:140135749-140135829 2.86e-02 80 chr16:67062746-67062826 6.11e-01 80 chr17:30677197-30677277 2.28e-02 67_[+1(6.93e-05)]_5 chr17:28443847-28443927 8.66e-02 59_[+4(4.94e-05)]_13 chr7:152160628-152160708 2.35e-01 49_[+2(5.38e-05)]_23 chr15:44829356-44829436 3.19e-01 80 chr2:127066127-127066207 9.90e-02 72_[+4(8.14e-05)] chr3:170587894-170587974 1.22e-01 56_[+3(1.85e-05)]_16 chr6:86352880-86352960 1.43e-01 55_[+3(8.39e-05)]_17 chr4:174255404-174255484 4.97e-01 80 chr5:108084288-108084368 4.06e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************