******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/STAT2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr20:36751433-36751513 1.0000 80 chr14:94576953-94577033 1.0000 80 chr16:50699378-50699458 1.0000 80 chr8:144105611-144105691 1.0000 80 chr2:26716578-26716658 1.0000 80 chr12:113344716-11334479 1.0000 80 chr11:57333733-57333813 1.0000 80 chr8:29957319-29957399 1.0000 80 chr3:122399591-122399671 1.0000 80 chr4:89300521-89300601 1.0000 80 chr20:35579210-35579290 1.0000 80 chr15:92015887-92015967 1.0000 80 chr11:615624-615704 1.0000 80 chr3:122283115-122283195 1.0000 80 chr5:131832717-131832797 1.0000 80 chr1:185303422-185303502 1.0000 80 chr10:91174277-91174357 1.0000 80 chrX:154014320-154014400 1.0000 80 chr21:42792460-42792540 1.0000 80 chr10:91152280-91152360 1.0000 80 chr11:5646123-5646203 1.0000 80 chr7:87834677-87834757 1.0000 80 chr18:60173632-60173712 1.0000 80 chr7:92776933-92777013 1.0000 80 chr10:91087596-91087676 1.0000 80 chr15:81400328-81400408 1.0000 80 chr10:25156300-25156380 1.0000 80 chr2:97151920-97152000 1.0000 80 chr2:7017716-7017796 1.0000 80 chr11:4414888-4414968 1.0000 80 chr15:74287073-74287153 1.0000 80 chr13:43566410-43566490 1.0000 80 chr1:39251914-39251994 1.0000 80 chr10:91092184-91092264 1.0000 80 chr2:231084680-231084760 1.0000 80 chr2:120989954-120990034 1.0000 80 chr11:5710927-5711007 1.0000 80 chr2:231280861-231280941 1.0000 80 chr17:26595413-26595493 1.0000 80 chr1:205216556-205216636 1.0000 80 chr17:40264721-40264801 1.0000 80 chr10:25026143-25026223 1.0000 80 chr7:92747390-92747470 1.0000 80 chr15:75417786-75417866 1.0000 80 chr1:169337688-169337768 1.0000 80 chr2:201248606-201248686 1.0000 80 chr6:16237003-16237083 1.0000 80 chr11:78356411-78356491 1.0000 80 chr6:47382626-47382706 1.0000 80 chr12:104995214-10499529 1.0000 80 chr12:14437631-14437711 1.0000 80 chr18:2641792-2641872 1.0000 80 chr11:356348-356428 1.0000 80 chr12:121477040-12147712 1.0000 80 chr2:37384102-37384182 1.0000 80 chr12:113376110-11337619 1.0000 80 chr1:21670076-21670156 1.0000 80 chr6:99281979-99282059 1.0000 80 chr7:120640164-120640244 1.0000 80 chr3:5191290-5191370 1.0000 80 chr21:38791953-38792033 1.0000 80 chr5:84943753-84943833 1.0000 80 chr9:32526259-32526339 1.0000 80 chr8:144107935-144108015 1.0000 80 chr3:130791825-130791905 1.0000 80 chr10:80719149-80719229 1.0000 80 chr14:97297408-97297488 1.0000 80 chr4:169401659-169401739 1.0000 80 chr10:3975328-3975408 1.0000 80 chr7:149552512-149552592 1.0000 80 chr17:41158745-41158825 1.0000 80 chr4:17578603-17578683 1.0000 80 chr2:163175193-163175273 1.0000 80 chr4:38285513-38285593 1.0000 80 chr3:172312531-172312611 1.0000 80 chr17:76976022-76976102 1.0000 80 chr6:168241682-168241762 1.0000 80 chr1:25682534-25682614 1.0000 80 chr17:30454493-30454573 1.0000 80 chr11:113244756-11324483 1.0000 80 chr2:38701242-38701322 1.0000 80 chr11:117043917-11704399 1.0000 80 chr4:169239905-169239985 1.0000 80 chr17:53644721-53644801 1.0000 80 chr3:48514465-48514545 1.0000 80 chr16:11406645-11406725 1.0000 80 chr1:27998785-27998865 1.0000 80 chr3:171897691-171897771 1.0000 80 chr20:62205539-62205619 1.0000 80 chr5:81763151-81763231 1.0000 80 chr7:36444528-36444608 1.0000 80 chr1:154580644-154580724 1.0000 80 chr1:150534652-150534732 1.0000 80 chr10:3871185-3871265 1.0000 80 chr9:37587658-37587738 1.0000 80 chr11:313969-314049 1.0000 80 chr6:10838819-10838899 1.0000 80 chr12:113416258-11341633 1.0000 80 chr18:23570630-23570710 1.0000 80 chr19:10196906-10196986 1.0000 80 chr16:11391482-11391562 1.0000 80 chr13:50069997-50070077 1.0000 80 chr2:74433422-74433502 1.0000 80 chr14:24630349-24630429 1.0000 80 chr19:47760176-47760256 1.0000 80 chr6:100706003-100706083 1.0000 80 chr6:138043961-138044041 1.0000 80 chr3:177332862-177332942 1.0000 80 chr17:6659297-6659377 1.0000 80 chr11:320889-320969 1.0000 80 chr2:146481669-146481749 1.0000 80 chr6:42013473-42013553 1.0000 80 chr8:145060564-145060644 1.0000 80 chr3:172230360-172230440 1.0000 80 chr19:17516522-17516602 1.0000 80 chr22:50978131-50978211 1.0000 80 chr5:131826554-131826634 1.0000 80 chr22:18632796-18632876 1.0000 80 chr6:36315556-36315636 1.0000 80 chr21:35029606-35029686 1.0000 80 chr3:5539328-5539408 1.0000 80 chr15:101137152-10113723 1.0000 80 chr1:41311015-41311095 1.0000 80 chr5:119848599-119848679 1.0000 80 chr3:36949629-36949709 1.0000 80 chr2:202084928-202085008 1.0000 80 chr2:99177002-99177082 1.0000 80 chr10:114851866-11485194 1.0000 80 chr19:47217828-47217908 1.0000 80 chr2:152146429-152146509 1.0000 80 chr1:110453367-110453447 1.0000 80 chr21:42798032-42798112 1.0000 80 chr7:134832716-134832796 1.0000 80 chr6:32821553-32821633 1.0000 80 chr9:100881469-100881549 1.0000 80 chr17:78237325-78237405 1.0000 80 chr2:7005881-7005961 1.0000 80 chr2:240202065-240202145 1.0000 80 chr15:57029742-57029822 1.0000 80 chr11:64764490-64764570 1.0000 80 chrX:40869521-40869601 1.0000 80 chr7:4660190-4660270 1.0000 80 chr9:90289647-90289727 1.0000 80 chr13:111527213-11152729 1.0000 80 chr16:89988247-89988327 1.0000 80 chr12:127568025-12756810 1.0000 80 chr8:26150630-26150710 1.0000 80 chr16:17922051-17922131 1.0000 80 chr1:54842905-54842985 1.0000 80 chr6:82462968-82463048 1.0000 80 chr14:97284357-97284437 1.0000 80 chr10:104541114-10454119 1.0000 80 chr19:51727741-51727821 1.0000 80 chrX:48794423-48794503 1.0000 80 chr3:146262418-146262498 1.0000 80 chr4:73419413-73419493 1.0000 80 chr15:58400449-58400529 1.0000 80 chr7:100145707-100145787 1.0000 80 chr7:8805170-8805250 1.0000 80 chr5:81581242-81581322 1.0000 80 chrX:41190893-41190973 1.0000 80 chr19:4841103-4841183 1.0000 80 chr12:6445445-6445525 1.0000 80 chr10:88535098-88535178 1.0000 80 chr1:159047064-159047144 1.0000 80 chr6:34923316-34923396 1.0000 80 chr2:86811359-86811439 1.0000 80 chr7:74064522-74064602 1.0000 80 chr22:46589828-46589908 1.0000 80 chr2:152118323-152118403 1.0000 80 chr20:388926-389006 1.0000 80 chr5:39077207-39077287 1.0000 80 chr1:11851024-11851104 1.0000 80 chr8:10488048-10488128 1.0000 80 chr15:52024165-52024245 1.0000 80 chr7:105924496-105924576 1.0000 80 chr1:113480977-113481057 1.0000 80 chr2:216696249-216696329 1.0000 80 chr16:3313869-3313949 1.0000 80 chr16:31033978-31034058 1.0000 80 chr5:142965732-142965812 1.0000 80 chr1:158979597-158979677 1.0000 80 chr8:103818662-103818742 1.0000 80 chr13:67914564-67914644 1.0000 80 chr8:124049957-124050037 1.0000 80 chr2:231200790-231200870 1.0000 80 chr18:46599000-46599080 1.0000 80 chr8:20060054-20060134 1.0000 80 chr19:50880951-50881031 1.0000 80 chr17:80408772-80408852 1.0000 80 chr6:15097482-15097562 1.0000 80 chr5:10627899-10627979 1.0000 80 chr1:44514065-44514145 1.0000 80 chr16:19707833-19707913 1.0000 80 chr14:100841776-10084185 1.0000 80 chr6:32806537-32806617 1.0000 80 chr9:101837852-101837932 1.0000 80 chr10:97068549-97068629 1.0000 80 chr9:14522745-14522825 1.0000 80 chr9:71584599-71584679 1.0000 80 chr7:2445760-2445840 1.0000 80 chr5:43040463-43040543 1.0000 80 chr1:948708-948788 1.0000 80 chr17:76254796-76254876 1.0000 80 chr1:173640230-173640310 1.0000 80 chr1:155163172-155163252 1.0000 80 chr19:48018761-48018841 1.0000 80 chr1:1710374-1710454 1.0000 80 chr5:131831520-131831600 1.0000 80 chr21:45275157-45275237 1.0000 80 chr2:201990458-201990538 1.0000 80 chr2:113836236-113836316 1.0000 80 chr1:8812714-8812794 1.0000 80 chr2:178107346-178107426 1.0000 80 chr20:48393033-48393113 1.0000 80 chr12:32174012-32174092 1.0000 80 chr6:43597842-43597922 1.0000 80 chr22:36635601-36635681 1.0000 80 chr15:43398335-43398415 1.0000 80 chr3:28390107-28390187 1.0000 80 chr6:30457089-30457169 1.0000 80 chr15:45020984-45021064 1.0000 80 chr4:185395905-185395985 1.0000 80 chr12:133179222-13317930 1.0000 80 chr14:58711914-58711994 1.0000 80 chr2:191878979-191879059 1.0000 80 chr3:52115028-52115108 1.0000 80 chr17:39667336-39667416 1.0000 80 chr19:50433356-50433436 1.0000 80 chr9:108641622-108641702 1.0000 80 chr9:90407912-90407992 1.0000 80 chr12:56754183-56754263 1.0000 80 chr19:893274-893354 1.0000 80 chr11:34331019-34331099 1.0000 80 chr10:111827935-11182801 1.0000 80 chr8:99394938-99395018 1.0000 80 chr3:197439318-197439398 1.0000 80 chr8:8864272-8864352 1.0000 80 chr17:33571503-33571583 1.0000 80 chr6:169852259-169852339 1.0000 80 chr3:128268244-128268324 1.0000 80 chr4:130017401-130017481 1.0000 80 chr2:43195233-43195313 1.0000 80 chr8:144629505-144629585 1.0000 80 chr7:138794085-138794165 1.0000 80 chr10:130397883-13039796 1.0000 80 chr21:40159658-40159738 1.0000 80 chr6:31895441-31895521 1.0000 80 chr14:91580917-91580997 1.0000 80 chr3:172310126-172310206 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_STAT2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/STAT2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.237 C 0.255 G 0.248 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.237 C 0.255 G 0.248 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAMYGAAA MEME-1 width = 8 sites = 90 llr = 770 E-value = 3.1e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAMYGAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa41:aaa pos.-specific C ::34:::: probability G ::21a::: matrix T ::14:::: bits 2.1 * ** * 1.9 ** **** 1.7 ** **** 1.5 ** **** Relative 1.2 ** **** Entropy 1.0 ** **** (12.3 bits) 0.8 ** **** 0.6 ** **** 0.4 ** **** 0.2 ******** 0.0 -------- Multilevel AAATGAAA consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMYGAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:197439318-197439398 71 1.14e-05 CAGAGGGAGG AAATGAAA GC chr16:17922051-17922131 12 1.14e-05 gtttctcata aaatgaaa cccacaacta chr17:78237325-78237405 49 1.14e-05 CTTTCGCAGA AAATGAAA CTGAAGCCGT chr19:47217828-47217908 25 1.14e-05 TGGGGGCAGG AAATGAAA CCTAGTAGAA chr3:5539328-5539408 49 1.14e-05 TACTCTAGGA AAATGAAA CTGATTGCAA chr17:53644721-53644801 11 1.14e-05 GGTTTCTTGG AAATGAAA CTGCTTCCCC chr11:113244756-11324483 21 1.14e-05 GCGAAGGGGA AAATGAAA CTAACCCATT chr6:168241682-168241762 56 1.14e-05 GGGAAGGAGA AAATGAAA CTGAAGGAGG chr17:41158745-41158825 41 1.14e-05 GATTTCACGG AAATGAAA GTGGAAGCAA chr21:42792460-42792540 32 1.14e-05 CAGCGAGCAG AAATGAAA CCGAAACTGA chr11:57333733-57333813 59 1.14e-05 GAGGAACAGA AAATGAAA GTAGAAAGGC chr2:26716578-26716658 69 1.14e-05 gtaaggggga aaatgaaa ctta chr14:94576953-94577033 36 1.14e-05 GTTTCCTGGA AAATGAAA CCTATCTCAT chr11:34331019-34331099 35 2.26e-05 agcagaggag aaacgaaa ctcatgacgg chr1:158979597-158979677 47 2.26e-05 TGACTAACAG AAACGAAA GCTAAAAACA chrX:41190893-41190973 61 2.26e-05 GTTCATAGGA AAACGAAA CTGAAACAAA chr2:7005881-7005961 18 2.26e-05 CGCCGGCGGG AAACGAAA CCCGGAGGGA chr7:134832716-134832796 51 2.26e-05 GCAAGTTAGG AAACGAAA GTGAAATCAG chr22:18632796-18632876 52 2.26e-05 ATTCAGTGGA AAACGAAA GCTGGGCGGG chr17:6659297-6659377 64 2.26e-05 TGCCTGCAAG AAACGAAA CTCAACCGA chr6:100706003-100706083 61 2.26e-05 AAAAAGAGGA AAACGAAA GGCTATAAGG chr13:50069997-50070077 67 2.26e-05 AGATTTAAGA AAACGAAA CCTAGT chr6:99281979-99282059 57 2.26e-05 CCCTATTGGG AAACGAAA GTGGACACCA chr12:113376110-11337619 22 2.26e-05 TGCTAGAAAG AAACGAAA CTGAAAGCAG chr2:201248606-201248686 51 2.26e-05 GGTTTCAGAG AAACGAAA GTGAAACTTT chr17:26595413-26595493 49 2.26e-05 acactcagga aaacgaaa cctaactaac chr3:122399591-122399671 62 2.26e-05 GTTTTCCAGG AAACGAAA GCGAAAGAGT chr12:113344716-11334479 35 2.26e-05 CCTTCTGAGG AAACGAAA CCAACAGCAG chr14:91580917-91580997 58 3.49e-05 AAGAAAGTAA AACTGAAA CTGCCTTTGA chr17:39667336-39667416 58 3.49e-05 aaagtgggga aactgaaa cccagagaga chr8:124049957-124050037 16 3.49e-05 ACGAAATAGA AACTGAAA CTGAAGCTGT chr10:104541114-10454119 52 3.49e-05 gctgtaagga aactgaaa cccagggaga chr1:54842905-54842985 3 3.49e-05 AA AACTGAAA CCCACGGTGC chr8:145060564-145060644 67 3.49e-05 ACAAAAGTGA AACTGAAA GACGGA chr11:313969-314049 67 3.49e-05 ACTTCTGAGA AACTGAAA CGACAG chr10:3871185-3871265 52 3.49e-05 TCAGAATCGA AACTGAAA CTAAGAAAAG chr5:81763151-81763231 52 3.49e-05 TGACCTTTCC AACTGAAA CGCTGCTCCC chr4:38285513-38285593 41 3.49e-05 ctggtgagga aactgaaa ctcaaggaag chr1:21670076-21670156 48 3.49e-05 cagatgagga aactgaaa ctcaagggtg chr17:40264721-40264801 21 3.49e-05 CAGAAATGGA AACTGAAA CTGAGGGGAG chr2:120989954-120990034 72 3.49e-05 GCTGAATCGA AACTGAAA A chr7:87834677-87834757 34 3.49e-05 aagatgggga aactgaaa ctgggcatta chr3:122283115-122283195 66 3.49e-05 AGGGAAGCGA AACTGAAA CTTTGCG chr12:56754183-56754263 69 4.70e-05 TGAGCCCCGG AACCGAAA CTAG chr14:58711914-58711994 41 4.70e-05 CACTTAGGGA AACCGAAA GTGGAAACTC chr1:1710374-1710454 47 4.70e-05 CGGATTTGGG AACCGAAA CTTAGAGCAG chr1:948708-948788 64 4.70e-05 GGGAAAGGGA AACCGAAA CTGAAGCCA chr2:216696249-216696329 63 4.70e-05 ctttcagAGA AACCGAAA GTCACAGCAC chr9:100881469-100881549 54 4.70e-05 TCCCAAGGGA AACCGAAA CCTCGGCCGT chr20:35579210-35579290 71 4.70e-05 tcagggagga aaccgaaa cc chr22:36635601-36635681 24 5.89e-05 TCGAAAGGGA AAGTGAAA GTCACAACTT chr10:80719149-80719229 67 5.89e-05 cagatgagga aagtgaaa cctagg chr2:231084680-231084760 63 5.89e-05 GAGAAAAGAA AAGTGAAA GTTTTCGGAG chr6:32821553-32821633 49 7.07e-05 ATTTAGGGGA AAGCGAAA TCGAAAGCGG chr19:10196906-10196986 46 7.07e-05 CCTGAATCGA AAGCGAAA CAGGGGCCGG chr2:97151920-97152000 36 7.07e-05 GCTTCTAGGA AAGCGAAA CTTAGCCGCA chr11:615624-615704 72 7.07e-05 GCTCCCGGGA AAGCGAAA C chr4:89300521-89300601 66 7.07e-05 TTCAAGTTCA AAGCGAAA CTGAGAG chr1:8812714-8812794 72 8.11e-05 TGATATGATC AAAAGAAA T chr3:48514465-48514545 57 8.11e-05 CTTTTGGAGA AAAAGAAA GCAAATCTCC chr8:8864272-8864352 10 9.20e-05 CTCTTCCTC AAAGGAAA TGGGTGAGTC chr19:48018761-48018841 52 9.20e-05 GTTTGTGGGA AAAGGAAA CCGTTCTGCT chr19:51727741-51727821 22 9.20e-05 atgaggctag aaaggaaa ttggaactta chr12:14437631-14437711 68 9.20e-05 AGGGTTAGGA AAAGGAAA CAAGA chr8:29957319-29957399 55 9.20e-05 gatttccagg aaaggaaa gagggccagt chr10:114851866-11485194 5 1.16e-04 ATGA AACAGAAA GACTGGGTTT chr10:25026143-25026223 40 1.16e-04 tcaggcaagg aattgaaa ctcttcagat chrX:154014320-154014400 68 1.16e-04 TTGGTTGAGA AACAGAAA CTACA chr19:4841103-4841183 53 1.27e-04 gcacaagaga aacggaaa catacgtcca chr7:138794085-138794165 51 1.40e-04 GGAAATCGGA AATCGAAA CTTACAAGTG chr9:32526259-32526339 71 1.40e-04 CTAAAGGGAA AATCGAAA GT chr15:74287073-74287153 59 1.40e-04 CTAAACCGAG AATCGAAA CTAAGCTGGG chr2:7017716-7017796 68 1.40e-04 CATGTGGAAA AATCGAAA CTCTA chr3:172310126-172310206 63 1.51e-04 attcccagga aagagaaa ctgaactcct chr15:45020984-45021064 60 1.51e-04 GCTTTGAAGA AAGAGAAA CCAGGACGGG chr16:11391482-11391562 40 1.51e-04 CTTGACGGGA AAGAGAAA CTCAGCTGCC chr6:47382626-47382706 68 1.51e-04 AAAAACACCA AAGAGAAA GTTGC chr12:6445445-6445525 34 1.62e-04 AGATCCGGGA AAGGGAAA TCTTTTCCCA chr6:42013473-42013553 46 1.62e-04 TCAGCAGGGA AAGGGAAA CTTGGCAGGG chr21:40159658-40159738 71 1.73e-04 CCTTTTTTGG AATAGAAA CT chr6:43597842-43597922 49 1.73e-04 AGTGGCCGGG AATAGAAA CTTGGCCTAG chr11:117043917-11704399 64 1.85e-04 AGTTTTAGGA AATGGAAA GTGACTGAC chr2:43195233-43195313 59 2.10e-04 CCTGGGGCGG AAATGAGA AGCAGATGTG chr6:138043961-138044041 23 2.10e-04 GTCAGGAAAT AAATGAGA CAGCATTCTG chr5:84943753-84943833 57 2.10e-04 aatttcccaa taatgaaa ctttcttctc chr6:16237003-16237083 68 2.10e-04 GGGGTATAGC TAATGAAA CCATG chr3:5191290-5191370 48 2.34e-04 gatttcccaa taacgaaa ctttctttcc chr4:130017401-130017481 49 2.60e-04 CTCTGGAAAA TACTGAAA AGTATTTTAC chr15:81400328-81400408 29 2.60e-04 tcgtctgtga aactgaga caCACCCTAT chr3:172230360-172230440 61 3.12e-04 CGGGAAGGGG AAGTGAGA GGAAACCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMYGAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:197439318-197439398 1.1e-05 70_[+1]_2 chr16:17922051-17922131 1.1e-05 11_[+1]_61 chr17:78237325-78237405 1.1e-05 48_[+1]_24 chr19:47217828-47217908 1.1e-05 24_[+1]_48 chr3:5539328-5539408 1.1e-05 48_[+1]_24 chr17:53644721-53644801 1.1e-05 10_[+1]_62 chr11:113244756-11324483 1.1e-05 20_[+1]_52 chr6:168241682-168241762 1.1e-05 55_[+1]_17 chr17:41158745-41158825 1.1e-05 40_[+1]_32 chr21:42792460-42792540 1.1e-05 31_[+1]_41 chr11:57333733-57333813 1.1e-05 58_[+1]_14 chr2:26716578-26716658 1.1e-05 68_[+1]_4 chr14:94576953-94577033 1.1e-05 35_[+1]_37 chr11:34331019-34331099 2.3e-05 34_[+1]_38 chr1:158979597-158979677 2.3e-05 46_[+1]_26 chrX:41190893-41190973 2.3e-05 60_[+1]_12 chr2:7005881-7005961 2.3e-05 17_[+1]_55 chr7:134832716-134832796 2.3e-05 50_[+1]_22 chr22:18632796-18632876 2.3e-05 51_[+1]_21 chr17:6659297-6659377 2.3e-05 63_[+1]_9 chr6:100706003-100706083 2.3e-05 60_[+1]_12 chr13:50069997-50070077 2.3e-05 66_[+1]_6 chr6:99281979-99282059 2.3e-05 56_[+1]_16 chr12:113376110-11337619 2.3e-05 21_[+1]_51 chr2:201248606-201248686 2.3e-05 50_[+1]_22 chr17:26595413-26595493 2.3e-05 48_[+1]_24 chr3:122399591-122399671 2.3e-05 61_[+1]_11 chr12:113344716-11334479 2.3e-05 34_[+1]_38 chr14:91580917-91580997 3.5e-05 57_[+1]_15 chr17:39667336-39667416 3.5e-05 57_[+1]_15 chr8:124049957-124050037 3.5e-05 15_[+1]_57 chr10:104541114-10454119 3.5e-05 51_[+1]_21 chr1:54842905-54842985 3.5e-05 2_[+1]_70 chr8:145060564-145060644 3.5e-05 66_[+1]_6 chr11:313969-314049 3.5e-05 66_[+1]_6 chr10:3871185-3871265 3.5e-05 51_[+1]_21 chr5:81763151-81763231 3.5e-05 51_[+1]_21 chr4:38285513-38285593 3.5e-05 40_[+1]_32 chr1:21670076-21670156 3.5e-05 47_[+1]_25 chr17:40264721-40264801 3.5e-05 20_[+1]_52 chr2:120989954-120990034 3.5e-05 71_[+1]_1 chr7:87834677-87834757 3.5e-05 33_[+1]_39 chr3:122283115-122283195 3.5e-05 65_[+1]_7 chr12:56754183-56754263 4.7e-05 68_[+1]_4 chr14:58711914-58711994 4.7e-05 40_[+1]_32 chr1:1710374-1710454 4.7e-05 46_[+1]_26 chr1:948708-948788 4.7e-05 63_[+1]_9 chr2:216696249-216696329 4.7e-05 62_[+1]_10 chr9:100881469-100881549 4.7e-05 53_[+1]_19 chr20:35579210-35579290 4.7e-05 70_[+1]_2 chr22:36635601-36635681 5.9e-05 23_[+1]_49 chr10:80719149-80719229 5.9e-05 66_[+1]_6 chr2:231084680-231084760 5.9e-05 62_[+1]_10 chr6:32821553-32821633 7.1e-05 48_[+1]_24 chr19:10196906-10196986 7.1e-05 45_[+1]_27 chr2:97151920-97152000 7.1e-05 35_[+1]_37 chr11:615624-615704 7.1e-05 71_[+1]_1 chr4:89300521-89300601 7.1e-05 65_[+1]_7 chr1:8812714-8812794 8.1e-05 71_[+1]_1 chr3:48514465-48514545 8.1e-05 56_[+1]_16 chr8:8864272-8864352 9.2e-05 9_[+1]_63 chr19:48018761-48018841 9.2e-05 51_[+1]_21 chr19:51727741-51727821 9.2e-05 21_[+1]_51 chr12:14437631-14437711 9.2e-05 67_[+1]_5 chr8:29957319-29957399 9.2e-05 54_[+1]_18 chr10:114851866-11485194 0.00012 4_[+1]_68 chr10:25026143-25026223 0.00012 39_[+1]_33 chrX:154014320-154014400 0.00012 67_[+1]_5 chr19:4841103-4841183 0.00013 52_[+1]_20 chr7:138794085-138794165 0.00014 50_[+1]_22 chr9:32526259-32526339 0.00014 70_[+1]_2 chr15:74287073-74287153 0.00014 58_[+1]_14 chr2:7017716-7017796 0.00014 67_[+1]_5 chr3:172310126-172310206 0.00015 62_[+1]_10 chr15:45020984-45021064 0.00015 59_[+1]_13 chr16:11391482-11391562 0.00015 39_[+1]_33 chr6:47382626-47382706 0.00015 67_[+1]_5 chr12:6445445-6445525 0.00016 33_[+1]_39 chr6:42013473-42013553 0.00016 45_[+1]_27 chr21:40159658-40159738 0.00017 70_[+1]_2 chr6:43597842-43597922 0.00017 48_[+1]_24 chr11:117043917-11704399 0.00019 63_[+1]_9 chr2:43195233-43195313 0.00021 58_[+1]_14 chr6:138043961-138044041 0.00021 22_[+1]_50 chr5:84943753-84943833 0.00021 56_[+1]_16 chr6:16237003-16237083 0.00021 67_[+1]_5 chr3:5191290-5191370 0.00023 47_[+1]_25 chr4:130017401-130017481 0.00026 48_[+1]_24 chr15:81400328-81400408 0.00026 28_[+1]_44 chr3:172230360-172230440 0.00031 60_[+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMYGAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAMYGAAA width=8 seqs=90 chr3:197439318-197439398 ( 71) AAATGAAA 1 chr16:17922051-17922131 ( 12) AAATGAAA 1 chr17:78237325-78237405 ( 49) AAATGAAA 1 chr19:47217828-47217908 ( 25) AAATGAAA 1 chr3:5539328-5539408 ( 49) AAATGAAA 1 chr17:53644721-53644801 ( 11) AAATGAAA 1 chr11:113244756-11324483 ( 21) AAATGAAA 1 chr6:168241682-168241762 ( 56) AAATGAAA 1 chr17:41158745-41158825 ( 41) AAATGAAA 1 chr21:42792460-42792540 ( 32) AAATGAAA 1 chr11:57333733-57333813 ( 59) AAATGAAA 1 chr2:26716578-26716658 ( 69) AAATGAAA 1 chr14:94576953-94577033 ( 36) AAATGAAA 1 chr11:34331019-34331099 ( 35) AAACGAAA 1 chr1:158979597-158979677 ( 47) AAACGAAA 1 chrX:41190893-41190973 ( 61) AAACGAAA 1 chr2:7005881-7005961 ( 18) AAACGAAA 1 chr7:134832716-134832796 ( 51) AAACGAAA 1 chr22:18632796-18632876 ( 52) AAACGAAA 1 chr17:6659297-6659377 ( 64) AAACGAAA 1 chr6:100706003-100706083 ( 61) AAACGAAA 1 chr13:50069997-50070077 ( 67) AAACGAAA 1 chr6:99281979-99282059 ( 57) AAACGAAA 1 chr12:113376110-11337619 ( 22) AAACGAAA 1 chr2:201248606-201248686 ( 51) AAACGAAA 1 chr17:26595413-26595493 ( 49) AAACGAAA 1 chr3:122399591-122399671 ( 62) AAACGAAA 1 chr12:113344716-11334479 ( 35) AAACGAAA 1 chr14:91580917-91580997 ( 58) AACTGAAA 1 chr17:39667336-39667416 ( 58) AACTGAAA 1 chr8:124049957-124050037 ( 16) AACTGAAA 1 chr10:104541114-10454119 ( 52) AACTGAAA 1 chr1:54842905-54842985 ( 3) AACTGAAA 1 chr8:145060564-145060644 ( 67) AACTGAAA 1 chr11:313969-314049 ( 67) AACTGAAA 1 chr10:3871185-3871265 ( 52) AACTGAAA 1 chr5:81763151-81763231 ( 52) AACTGAAA 1 chr4:38285513-38285593 ( 41) AACTGAAA 1 chr1:21670076-21670156 ( 48) AACTGAAA 1 chr17:40264721-40264801 ( 21) AACTGAAA 1 chr2:120989954-120990034 ( 72) AACTGAAA 1 chr7:87834677-87834757 ( 34) AACTGAAA 1 chr3:122283115-122283195 ( 66) AACTGAAA 1 chr12:56754183-56754263 ( 69) AACCGAAA 1 chr14:58711914-58711994 ( 41) AACCGAAA 1 chr1:1710374-1710454 ( 47) AACCGAAA 1 chr1:948708-948788 ( 64) AACCGAAA 1 chr2:216696249-216696329 ( 63) AACCGAAA 1 chr9:100881469-100881549 ( 54) AACCGAAA 1 chr20:35579210-35579290 ( 71) AACCGAAA 1 chr22:36635601-36635681 ( 24) AAGTGAAA 1 chr10:80719149-80719229 ( 67) AAGTGAAA 1 chr2:231084680-231084760 ( 63) AAGTGAAA 1 chr6:32821553-32821633 ( 49) AAGCGAAA 1 chr19:10196906-10196986 ( 46) AAGCGAAA 1 chr2:97151920-97152000 ( 36) AAGCGAAA 1 chr11:615624-615704 ( 72) AAGCGAAA 1 chr4:89300521-89300601 ( 66) AAGCGAAA 1 chr1:8812714-8812794 ( 72) AAAAGAAA 1 chr3:48514465-48514545 ( 57) AAAAGAAA 1 chr8:8864272-8864352 ( 10) AAAGGAAA 1 chr19:48018761-48018841 ( 52) AAAGGAAA 1 chr19:51727741-51727821 ( 22) AAAGGAAA 1 chr12:14437631-14437711 ( 68) AAAGGAAA 1 chr8:29957319-29957399 ( 55) AAAGGAAA 1 chr10:114851866-11485194 ( 5) AACAGAAA 1 chr10:25026143-25026223 ( 40) AATTGAAA 1 chrX:154014320-154014400 ( 68) AACAGAAA 1 chr19:4841103-4841183 ( 53) AACGGAAA 1 chr7:138794085-138794165 ( 51) AATCGAAA 1 chr9:32526259-32526339 ( 71) AATCGAAA 1 chr15:74287073-74287153 ( 59) AATCGAAA 1 chr2:7017716-7017796 ( 68) AATCGAAA 1 chr3:172310126-172310206 ( 63) AAGAGAAA 1 chr15:45020984-45021064 ( 60) AAGAGAAA 1 chr16:11391482-11391562 ( 40) AAGAGAAA 1 chr6:47382626-47382706 ( 68) AAGAGAAA 1 chr12:6445445-6445525 ( 34) AAGGGAAA 1 chr6:42013473-42013553 ( 46) AAGGGAAA 1 chr21:40159658-40159738 ( 71) AATAGAAA 1 chr6:43597842-43597922 ( 49) AATAGAAA 1 chr11:117043917-11704399 ( 64) AATGGAAA 1 chr2:43195233-43195313 ( 59) AAATGAGA 1 chr6:138043961-138044041 ( 23) AAATGAGA 1 chr5:84943753-84943833 ( 57) TAATGAAA 1 chr6:16237003-16237083 ( 68) TAATGAAA 1 chr3:5191290-5191370 ( 48) TAACGAAA 1 chr4:130017401-130017481 ( 49) TACTGAAA 1 chr15:81400328-81400408 ( 29) AACTGAGA 1 chr3:172230360-172230440 ( 61) AAGTGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMYGAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.54487 E= 3.1e-079 201 -1314 -1314 -255 208 -1314 -1314 -1314 91 23 -57 -155 -109 48 -131 74 -1314 -1314 201 -1314 208 -1314 -1314 -1314 201 -1314 -248 -1314 208 -1314 -1314 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMYGAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 3.1e-079 0.955556 0.000000 0.000000 0.044444 1.000000 0.000000 0.000000 0.000000 0.444444 0.300000 0.166667 0.088889 0.111111 0.355556 0.100000 0.433333 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.955556 0.000000 0.044444 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMYGAAA MEME-1 regular expression -------------------------------------------------------------------------------- AA[AC][TC]GAAA -------------------------------------------------------------------------------- Time 5.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCRTTT MEME-2 width = 8 sites = 99 llr = 805 E-value = 1.4e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCRTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::31:: pos.-specific C :::a21:: probability G ::::42:: matrix T aaa:15aa bits 2.1 1.9 ** ** 1.7 **** ** 1.5 **** ** Relative 1.2 **** ** Entropy 1.0 **** ** (11.7 bits) 0.8 **** ** 0.6 **** ** 0.4 **** ** 0.2 ******** 0.0 -------- Multilevel TTTCGTTT consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCRTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:169852259-169852339 29 1.95e-05 CAGGTTTTGT TTTCGTTT CCTCATGCCT chr2:113836236-113836316 34 1.95e-05 taagcttaag tttcgttt tcttagtcaa chr1:113480977-113481057 46 1.95e-05 GAAACCTCAC TTTCGTTT CTTTTCCACT chr5:39077207-39077287 33 1.95e-05 TCTTCTTAGT TTTCGTTT CCCAGCTAGG chr2:152118323-152118403 11 1.95e-05 CAGGTTTTGG TTTCGTTT TTTGTTCCAG chr6:34923316-34923396 8 1.95e-05 atgttgg tttcgttt ccttctgcag chr3:146262418-146262498 13 1.95e-05 CGGCTCCTGG TTTCGTTT CCTGAATCTT chr14:97284357-97284437 10 1.95e-05 CTTCATCAC TTTCGTTT CTGGGAGACC chr21:42798032-42798112 21 1.95e-05 AGGAGCTAGG TTTCGTTT CTGCGCCCGG chr1:154580644-154580724 27 1.95e-05 TCAATTTCGC TTTCGTTT CCTCGGAAAG chr3:171897691-171897771 17 1.95e-05 tgggccttag tttcgttt cttcatctct chr3:172312531-172312611 41 1.95e-05 TGAAGTGAAC TTTCGTTT CTCCTGTTCT chr7:120640164-120640244 40 1.95e-05 AATGTTTTGG TTTCGTTT TCCCCCTTGG chr2:37384102-37384182 18 1.95e-05 TGGTTCTCAG TTTCGTTT TCCCCTTGGA chr6:47382626-47382706 16 1.95e-05 TGTGATTAGG TTTCGTTT TACTGTTAAT chr11:5710927-5711007 59 1.95e-05 AGAATTTAAC TTTCGTTT CTCACTCAGC chr7:92776933-92777013 39 1.95e-05 AGCAAGTTAG TTTCGTTT TCCTGAAGAA chr18:60173632-60173712 30 1.95e-05 TAAGTTTCAG TTTCGTTT CATTTTCCTC chr1:185303422-185303502 22 1.95e-05 ACATTGTAAG TTTCGTTT CTGGTTGAGG chr15:92015887-92015967 2 1.95e-05 g tttcgttt ctctagggta chr4:89300521-89300601 14 1.95e-05 ACTTCCTCAG TTTCGTTT TCCCAACGCC chr8:144105611-144105691 67 1.95e-05 GAGAGCCTCG TTTCGTTT CGGGGC chr4:185395905-185395985 47 3.82e-05 GAAAAGTCAA TTTCATTT TCGCTTCCCC chr7:105924496-105924576 38 3.82e-05 AATCCTCGTG TTTCATTT TCCTTTTCAC chr21:35029606-35029686 35 3.82e-05 TTCCTCTTAG TTTCATTT CTTTCCATAA chr5:81763151-81763231 9 3.82e-05 TCATTTGG TTTCATTT TCCTGAAACC chr1:27998785-27998865 24 3.82e-05 CACTCTGCAG TTTCATTT TCCCCTCTCT chr21:38791953-38792033 18 3.82e-05 CTGAGATTAC TTTCATTT TCCTGTAAGT chr18:2641792-2641872 38 3.82e-05 TGATAATCAG TTTCATTT CTTCATAGTC chr6:16237003-16237083 21 3.82e-05 CTCTGATAAG TTTCATTT CCTTCCCTGA chr7:92747390-92747470 35 3.82e-05 TTGGTTTCAG TTTCATTT CTCAGATCTG chr10:25156300-25156380 41 3.82e-05 CTCTTGTCAG TTTCATTT TCCTAAAACA chr10:91087596-91087676 2 3.82e-05 G TTTCATTT TCCTCCTCCC chr11:5646123-5646203 24 3.82e-05 AAAATTTCAC TTTCATTT CTCAGGCAGT chr9:90407912-90407992 62 5.68e-05 AAGGCACGAG TTTCGGTT TCTGCCTTCC chr4:169239905-169239985 42 5.68e-05 CCGGCGGGAG TTTCGGTT TCCTTTCTCC chr4:169401659-169401739 25 5.68e-05 AGGGAGTTAG TTTCGGTT TCTTTTCTCC chr13:43566410-43566490 8 5.68e-05 AGCTGAG TTTCGGTT TCTCAGAATC chr10:91174277-91174357 3 5.68e-05 AG TTTCGGTT TCTGAAGCTT chr16:50699378-50699458 11 5.68e-05 CTGGAGAAAG TTTCGGTT TCCCAGCTGT chr14:94576953-94577033 21 5.68e-05 ATGTCTGCAG TTTCGGTT TCCTGGAAAA chr15:52024165-52024245 24 7.46e-05 CCCCAAGTAG TTTCAGTT TCCCAGACCC chr10:88535098-88535178 52 7.46e-05 GAGATGAGGC TTTCAGTT TCCTGCTTAT chr7:8805170-8805250 39 7.46e-05 aggctttagc tttcagtt tcttcgtgaa chr11:64764490-64764570 18 7.46e-05 GAGGGCCAAG TTTCAGTT TCTCCTAAAG chr19:17516522-17516602 38 7.46e-05 AGGTTTTCAG TTTCAGTT TCCCAGAAAG chr17:6659297-6659377 37 7.46e-05 ATCGGAAAAC TTTCAGTT TTGTTTCCTT chr12:113416258-11341633 68 7.46e-05 TAGACTTCAG TTTCAGTT TCCTG chr16:11406645-11406725 35 7.46e-05 CTGGTTTCAC TTTCAGTT TCTTGGAAAG chr8:144107935-144108015 27 7.46e-05 TGAGTTTCAG TTTCAGTT TCCTGGTACA chr10:91092184-91092264 8 7.46e-05 GATTCTG TTTCAGTT TCCCCTCAAG chr11:4414888-4414968 18 7.46e-05 CCTATTTCAC TTTCAGTT TCCGCTCAGA chr2:7017716-7017796 47 7.46e-05 CTGTTTCAAC TTTCAGTT TCACATGTGG chr1:173640230-173640310 58 9.47e-05 caaaactttc tttccttt tatggattag chr10:97068549-97068629 23 9.47e-05 ATCTGTCCAG TTTCCTTT TCCCCTTCTT chr2:86811359-86811439 10 9.47e-05 ccctgttag tttccttt ctctcaaaga chr11:320889-320969 14 9.47e-05 TTCTCAACAG TTTCCTTT TCCTGGCATT chr10:3975328-3975408 46 9.47e-05 TAGCTTTCTG TTTCCTTT CCCAAGATGT chr3:5191290-5191370 61 9.47e-05 cgaaactttc tttccttt tatgggctga chr21:42792460-42792540 6 9.47e-05 TGACT TTTCCTTT CTGGAAACCA chr4:130017401-130017481 28 1.32e-04 AGGTCTTGTT TTTCGCTT GATCTCTGGA chr3:28390107-28390187 27 1.32e-04 GGCCGCCGAG TTTCGATT CCTTAGTGTT chr7:2445760-2445840 5 1.32e-04 TGAG TTTCGATT CTTAAGTTGT chr6:32806537-32806617 34 1.32e-04 CAGCTTTCGC TTTCGCTT CCCCAGCCAA chr6:82462968-82463048 11 1.32e-04 GATAACTGGG TTTCGATT CTCGAAACCT chr22:18632796-18632876 31 1.32e-04 CCGCTGTAAG TTTCGCTT TCCATTCAGT chr20:62205539-62205619 44 1.32e-04 GAGCTCTCAG TTTCGATT CTGGCCCGGG chr17:30454493-30454573 28 1.32e-04 TCTAGATCAG TTTCGATT CCCGCTGGTG chr17:76976022-76976102 32 1.32e-04 AAGAGTCTAC TTTCGATT TCCAGAAACC chr2:163175193-163175273 19 1.32e-04 TTGGTTTCTG TTTCGATT CTCTTCTCAG chr12:121477040-12147712 18 1.32e-04 CTGTCATCAG TTTCGATT CTCAACTTTT chr9:108641622-108641702 33 1.67e-04 atcttctctg tttcactt ccccactccc chr16:31033978-31034058 8 1.67e-04 tttccac tttcactt tcctggaagt chr8:10488048-10488128 13 1.67e-04 AGGGTTTCAC TTTCACTT TCTGTTTCCC chr20:388926-389006 19 1.67e-04 GGGCCGCCAC TTTCACTT TCTCTTCCGC chr12:127568025-12756810 19 1.67e-04 TGCATTTTAG TTTCACTT tctatttagc chr17:78237325-78237405 34 1.67e-04 GCTGCTGTGA TTTCACTT TCGCAGAAAA chr2:152146429-152146509 15 1.67e-04 AAAAAACTAA TTTCACTT TCGATTTTTA chr3:48514465-48514545 32 1.67e-04 GGCCACTCAG TTTCAATT TCCTCCCCTT chr5:84943753-84943833 43 1.67e-04 cccgcttaag tttcaatt tcccaataat chr1:8812714-8812794 1 1.88e-04 . TTTCTTTT CCTATGCTAC chr8:20060054-20060134 59 1.88e-04 ATGACTAGTG TTTCTTTT TCTTGGTCAT chr8:26150630-26150710 4 1.88e-04 CGG TTTCTTTT CCTCTCTGTC chr16:3313869-3313949 42 2.45e-04 tttttctcag tttccatt tcctatcaaa chr3:36949629-36949709 6 2.45e-04 TTCTA TTTCCCTT CTTACACAAT chr10:3871185-3871265 24 2.45e-04 TAATTCTTTC TTTCCCTT TAAACTACAA chr6:99281979-99282059 13 2.45e-04 CGACCCAGCT TTTCCCTT ACCCCCTCCG chr20:48393033-48393113 23 2.64e-04 AGCTGGGCAG TTTCTGTT TCTCAGCCAA chr1:25682534-25682614 46 2.64e-04 tcctaactgg tttctgtt tcctctcttg chr16:19707833-19707913 61 3.03e-04 AAGCAGCTCT TTTCTATT TAAAACCTCT chr2:99177002-99177082 1 3.03e-04 . TTTCTCTT TCCCCAAAAG chr4:17578603-17578683 35 3.03e-04 TGGCACTCAG TTTCTATT TCCCGGGAGT chr1:948708-948788 20 3.23e-04 GGTCATTCGG TTTTGTTT CTTCCGCTCA chr3:177332862-177332942 8 3.42e-04 GAGAGCC TTTTATTT TGTCCCCCAG chr15:81400328-81400408 9 3.61e-04 ctctgcac ttccgttt cctcgtctgt chr2:231200790-231200870 40 4.37e-04 attgccactt ttttcttt actaaatatg chr6:138043961-138044041 1 4.37e-04 . TTTTCTTT AACTGTCAGG chr13:67914564-67914644 10 5.66e-04 gacacttta ttcccttt tatgggctga chr15:75417786-75417866 20 5.66e-04 CAGCCACTGG ttcccttt tcacagaaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCRTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:169852259-169852339 2e-05 28_[+2]_44 chr2:113836236-113836316 2e-05 33_[+2]_39 chr1:113480977-113481057 2e-05 45_[+2]_27 chr5:39077207-39077287 2e-05 32_[+2]_40 chr2:152118323-152118403 2e-05 10_[+2]_62 chr6:34923316-34923396 2e-05 7_[+2]_65 chr3:146262418-146262498 2e-05 12_[+2]_60 chr14:97284357-97284437 2e-05 9_[+2]_63 chr21:42798032-42798112 2e-05 20_[+2]_52 chr1:154580644-154580724 2e-05 26_[+2]_46 chr3:171897691-171897771 2e-05 16_[+2]_56 chr3:172312531-172312611 2e-05 40_[+2]_32 chr7:120640164-120640244 2e-05 39_[+2]_33 chr2:37384102-37384182 2e-05 17_[+2]_55 chr6:47382626-47382706 2e-05 15_[+2]_57 chr11:5710927-5711007 2e-05 58_[+2]_14 chr7:92776933-92777013 2e-05 38_[+2]_34 chr18:60173632-60173712 2e-05 29_[+2]_43 chr1:185303422-185303502 2e-05 21_[+2]_51 chr15:92015887-92015967 2e-05 1_[+2]_71 chr4:89300521-89300601 2e-05 13_[+2]_59 chr8:144105611-144105691 2e-05 66_[+2]_6 chr4:185395905-185395985 3.8e-05 46_[+2]_26 chr7:105924496-105924576 3.8e-05 37_[+2]_35 chr21:35029606-35029686 3.8e-05 34_[+2]_38 chr5:81763151-81763231 3.8e-05 8_[+2]_64 chr1:27998785-27998865 3.8e-05 23_[+2]_49 chr21:38791953-38792033 3.8e-05 17_[+2]_55 chr18:2641792-2641872 3.8e-05 37_[+2]_35 chr6:16237003-16237083 3.8e-05 20_[+2]_52 chr7:92747390-92747470 3.8e-05 34_[+2]_38 chr10:25156300-25156380 3.8e-05 40_[+2]_32 chr10:91087596-91087676 3.8e-05 1_[+2]_71 chr11:5646123-5646203 3.8e-05 23_[+2]_49 chr9:90407912-90407992 5.7e-05 61_[+2]_11 chr4:169239905-169239985 5.7e-05 41_[+2]_31 chr4:169401659-169401739 5.7e-05 24_[+2]_48 chr13:43566410-43566490 5.7e-05 7_[+2]_65 chr10:91174277-91174357 5.7e-05 2_[+2]_70 chr16:50699378-50699458 5.7e-05 10_[+2]_62 chr14:94576953-94577033 5.7e-05 20_[+2]_52 chr15:52024165-52024245 7.5e-05 23_[+2]_49 chr10:88535098-88535178 7.5e-05 51_[+2]_21 chr7:8805170-8805250 7.5e-05 38_[+2]_34 chr11:64764490-64764570 7.5e-05 17_[+2]_55 chr19:17516522-17516602 7.5e-05 37_[+2]_35 chr17:6659297-6659377 7.5e-05 36_[+2]_36 chr12:113416258-11341633 7.5e-05 67_[+2]_5 chr16:11406645-11406725 7.5e-05 34_[+2]_38 chr8:144107935-144108015 7.5e-05 26_[+2]_46 chr10:91092184-91092264 7.5e-05 7_[+2]_65 chr11:4414888-4414968 7.5e-05 17_[+2]_55 chr2:7017716-7017796 7.5e-05 46_[+2]_26 chr1:173640230-173640310 9.5e-05 57_[+2]_15 chr10:97068549-97068629 9.5e-05 22_[+2]_50 chr2:86811359-86811439 9.5e-05 9_[+2]_63 chr11:320889-320969 9.5e-05 13_[+2]_59 chr10:3975328-3975408 9.5e-05 45_[+2]_27 chr3:5191290-5191370 9.5e-05 60_[+2]_12 chr21:42792460-42792540 9.5e-05 5_[+2]_67 chr4:130017401-130017481 0.00013 27_[+2]_45 chr3:28390107-28390187 0.00013 26_[+2]_46 chr7:2445760-2445840 0.00013 4_[+2]_68 chr6:32806537-32806617 0.00013 33_[+2]_39 chr6:82462968-82463048 0.00013 10_[+2]_62 chr22:18632796-18632876 0.00013 30_[+2]_42 chr20:62205539-62205619 0.00013 43_[+2]_29 chr17:30454493-30454573 0.00013 27_[+2]_45 chr17:76976022-76976102 0.00013 31_[+2]_41 chr2:163175193-163175273 0.00013 18_[+2]_54 chr12:121477040-12147712 0.00013 17_[+2]_55 chr9:108641622-108641702 0.00017 32_[+2]_40 chr16:31033978-31034058 0.00017 7_[+2]_65 chr8:10488048-10488128 0.00017 12_[+2]_60 chr20:388926-389006 0.00017 18_[+2]_54 chr12:127568025-12756810 0.00017 18_[+2]_54 chr17:78237325-78237405 0.00017 33_[+2]_39 chr2:152146429-152146509 0.00017 14_[+2]_58 chr3:48514465-48514545 0.00017 31_[+2]_41 chr5:84943753-84943833 0.00017 42_[+2]_30 chr1:8812714-8812794 0.00019 [+2]_72 chr8:20060054-20060134 0.00019 58_[+2]_14 chr8:26150630-26150710 0.00019 3_[+2]_69 chr16:3313869-3313949 0.00024 41_[+2]_31 chr3:36949629-36949709 0.00024 5_[+2]_67 chr10:3871185-3871265 0.00024 23_[+2]_49 chr6:99281979-99282059 0.00024 12_[+2]_60 chr20:48393033-48393113 0.00026 22_[+2]_50 chr1:25682534-25682614 0.00026 45_[+2]_27 chr16:19707833-19707913 0.0003 60_[+2]_12 chr2:99177002-99177082 0.0003 [+2]_72 chr4:17578603-17578683 0.0003 34_[+2]_38 chr1:948708-948788 0.00032 19_[+2]_53 chr3:177332862-177332942 0.00034 7_[+2]_65 chr15:81400328-81400408 0.00036 8_[+2]_64 chr2:231200790-231200870 0.00044 39_[+2]_33 chr6:138043961-138044041 0.00044 [+2]_72 chr13:67914564-67914644 0.00057 9_[+2]_63 chr15:75417786-75417866 0.00057 19_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCRTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCRTTT width=8 seqs=99 chr6:169852259-169852339 ( 29) TTTCGTTT 1 chr2:113836236-113836316 ( 34) TTTCGTTT 1 chr1:113480977-113481057 ( 46) TTTCGTTT 1 chr5:39077207-39077287 ( 33) TTTCGTTT 1 chr2:152118323-152118403 ( 11) TTTCGTTT 1 chr6:34923316-34923396 ( 8) TTTCGTTT 1 chr3:146262418-146262498 ( 13) TTTCGTTT 1 chr14:97284357-97284437 ( 10) TTTCGTTT 1 chr21:42798032-42798112 ( 21) TTTCGTTT 1 chr1:154580644-154580724 ( 27) TTTCGTTT 1 chr3:171897691-171897771 ( 17) TTTCGTTT 1 chr3:172312531-172312611 ( 41) TTTCGTTT 1 chr7:120640164-120640244 ( 40) TTTCGTTT 1 chr2:37384102-37384182 ( 18) TTTCGTTT 1 chr6:47382626-47382706 ( 16) TTTCGTTT 1 chr11:5710927-5711007 ( 59) TTTCGTTT 1 chr7:92776933-92777013 ( 39) TTTCGTTT 1 chr18:60173632-60173712 ( 30) TTTCGTTT 1 chr1:185303422-185303502 ( 22) TTTCGTTT 1 chr15:92015887-92015967 ( 2) TTTCGTTT 1 chr4:89300521-89300601 ( 14) TTTCGTTT 1 chr8:144105611-144105691 ( 67) TTTCGTTT 1 chr4:185395905-185395985 ( 47) TTTCATTT 1 chr7:105924496-105924576 ( 38) TTTCATTT 1 chr21:35029606-35029686 ( 35) TTTCATTT 1 chr5:81763151-81763231 ( 9) TTTCATTT 1 chr1:27998785-27998865 ( 24) TTTCATTT 1 chr21:38791953-38792033 ( 18) TTTCATTT 1 chr18:2641792-2641872 ( 38) TTTCATTT 1 chr6:16237003-16237083 ( 21) TTTCATTT 1 chr7:92747390-92747470 ( 35) TTTCATTT 1 chr10:25156300-25156380 ( 41) TTTCATTT 1 chr10:91087596-91087676 ( 2) TTTCATTT 1 chr11:5646123-5646203 ( 24) TTTCATTT 1 chr9:90407912-90407992 ( 62) TTTCGGTT 1 chr4:169239905-169239985 ( 42) TTTCGGTT 1 chr4:169401659-169401739 ( 25) TTTCGGTT 1 chr13:43566410-43566490 ( 8) TTTCGGTT 1 chr10:91174277-91174357 ( 3) TTTCGGTT 1 chr16:50699378-50699458 ( 11) TTTCGGTT 1 chr14:94576953-94577033 ( 21) TTTCGGTT 1 chr15:52024165-52024245 ( 24) TTTCAGTT 1 chr10:88535098-88535178 ( 52) TTTCAGTT 1 chr7:8805170-8805250 ( 39) TTTCAGTT 1 chr11:64764490-64764570 ( 18) TTTCAGTT 1 chr19:17516522-17516602 ( 38) TTTCAGTT 1 chr17:6659297-6659377 ( 37) TTTCAGTT 1 chr12:113416258-11341633 ( 68) TTTCAGTT 1 chr16:11406645-11406725 ( 35) TTTCAGTT 1 chr8:144107935-144108015 ( 27) TTTCAGTT 1 chr10:91092184-91092264 ( 8) TTTCAGTT 1 chr11:4414888-4414968 ( 18) TTTCAGTT 1 chr2:7017716-7017796 ( 47) TTTCAGTT 1 chr1:173640230-173640310 ( 58) TTTCCTTT 1 chr10:97068549-97068629 ( 23) TTTCCTTT 1 chr2:86811359-86811439 ( 10) TTTCCTTT 1 chr11:320889-320969 ( 14) TTTCCTTT 1 chr10:3975328-3975408 ( 46) TTTCCTTT 1 chr3:5191290-5191370 ( 61) TTTCCTTT 1 chr21:42792460-42792540 ( 6) TTTCCTTT 1 chr4:130017401-130017481 ( 28) TTTCGCTT 1 chr3:28390107-28390187 ( 27) TTTCGATT 1 chr7:2445760-2445840 ( 5) TTTCGATT 1 chr6:32806537-32806617 ( 34) TTTCGCTT 1 chr6:82462968-82463048 ( 11) TTTCGATT 1 chr22:18632796-18632876 ( 31) TTTCGCTT 1 chr20:62205539-62205619 ( 44) TTTCGATT 1 chr17:30454493-30454573 ( 28) TTTCGATT 1 chr17:76976022-76976102 ( 32) TTTCGATT 1 chr2:163175193-163175273 ( 19) TTTCGATT 1 chr12:121477040-12147712 ( 18) TTTCGATT 1 chr9:108641622-108641702 ( 33) TTTCACTT 1 chr16:31033978-31034058 ( 8) TTTCACTT 1 chr8:10488048-10488128 ( 13) TTTCACTT 1 chr20:388926-389006 ( 19) TTTCACTT 1 chr12:127568025-12756810 ( 19) TTTCACTT 1 chr17:78237325-78237405 ( 34) TTTCACTT 1 chr2:152146429-152146509 ( 15) TTTCACTT 1 chr3:48514465-48514545 ( 32) TTTCAATT 1 chr5:84943753-84943833 ( 43) TTTCAATT 1 chr1:8812714-8812794 ( 1) TTTCTTTT 1 chr8:20060054-20060134 ( 59) TTTCTTTT 1 chr8:26150630-26150710 ( 4) TTTCTTTT 1 chr16:3313869-3313949 ( 42) TTTCCATT 1 chr3:36949629-36949709 ( 6) TTTCCCTT 1 chr10:3871185-3871265 ( 24) TTTCCCTT 1 chr6:99281979-99282059 ( 13) TTTCCCTT 1 chr20:48393033-48393113 ( 23) TTTCTGTT 1 chr1:25682534-25682614 ( 46) TTTCTGTT 1 chr16:19707833-19707913 ( 61) TTTCTATT 1 chr2:99177002-99177082 ( 1) TTTCTCTT 1 chr4:17578603-17578683 ( 35) TTTCTATT 1 chr1:948708-948788 ( 20) TTTTGTTT 1 chr3:177332862-177332942 ( 8) TTTTATTT 1 chr15:81400328-81400408 ( 9) TTCCGTTT 1 chr2:231200790-231200870 ( 40) TTTTCTTT 1 chr6:138043961-138044041 ( 1) TTTTCTTT 1 chr13:67914564-67914644 ( 10) TTCCCTTT 1 chr15:75417786-75417866 ( 20) TTCCCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCRTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.00024 E= 1.4e-074 -1327 -1327 -1327 194 -1327 -1327 -1327 194 -1327 -307 -1327 190 -1327 191 -1327 -269 53 -75 78 -169 -85 -85 -22 99 -1327 -1327 -1327 194 -1327 -1327 -1327 194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCRTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 1.4e-074 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.030303 0.000000 0.969697 0.000000 0.959596 0.000000 0.040404 0.343434 0.151515 0.424242 0.080808 0.131313 0.141414 0.212121 0.515152 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCRTTT MEME-2 regular expression -------------------------------------------------------------------------------- TTTC[GA][TG]TT -------------------------------------------------------------------------------- Time 8.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCNRGAA MEME-3 width = 8 sites = 95 llr = 701 E-value = 3.9e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCNRGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::134:9a pos.-specific C 1a63:::: probability G :::2691: matrix T 9:32:1:: bits 2.1 * 1.9 * * 1.7 ** * * 1.5 ** *** Relative 1.2 ** *** Entropy 1.0 ** **** (10.7 bits) 0.8 *** **** 0.6 *** **** 0.4 *** **** 0.2 *** **** 0.0 -------- Multilevel TCCCGGAA consensus TAA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCNRGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:43398335-43398415 34 1.49e-05 CCGGCCCGCT TCCCGGAA GCAAGCGTCA chr1:155163172-155163252 30 1.49e-05 CCCCACCACT TCCCGGAA TAGCCCCACC chr1:11851024-11851104 27 1.49e-05 ACAGGACATT TCCCGGAA TAGAACAAGG chr1:159047064-159047144 52 1.49e-05 ggcgggcaat tcccggaa tcggggtgcc chr18:23570630-23570710 63 1.49e-05 ATCCTTTGTT TCCCGGAA GAAGGTAAAA chr8:144629505-144629585 40 2.87e-05 tcatgagttt tccaggaa aggggtgggg chr3:128268244-128268324 64 2.87e-05 GGGCCTGGTT TCCAGGAA GGGCTTGGG chr19:50880951-50881031 34 2.87e-05 TCCACCCTCT TCCAGGAA ATGGCCCCCC chr8:20060054-20060134 36 2.87e-05 AGTCACTGTT TCCAGGAA AAGCTATGAC chr2:146481669-146481749 21 2.87e-05 acctctgtct tccaggaa attgggtcat chr3:130791825-130791905 66 2.87e-05 CCATGTGACT TCCAGGAA GCCCTCT chr1:205216556-205216636 49 2.87e-05 GAGCTGTCCT TCCAGGAA TGGGCGTGGC chr1:39251914-39251994 37 2.87e-05 TGACATCATT TCCAGGAA AGGCTTGTGG chr10:130397883-13039796 50 5.75e-05 ATCAGACATT TCCCAGAA ACAGTTCATA chr12:133179222-13317930 6 5.75e-05 GCATT TCCGGGAA GGTCAGGCAG chr12:32174012-32174092 71 5.75e-05 ggtgggtaat tcccagaa ct chr5:43040463-43040543 17 5.75e-05 ACCACCCGTT TCCGGGAA ATGAGCGTTG chr9:71584599-71584679 31 5.75e-05 CCGAGGCCCT TCCGGGAA TTGCTTTATG chr2:231200790-231200870 18 5.75e-05 ggcaggcagt tcccagaa ttggattgcc chr7:100145707-100145787 50 5.75e-05 GTGTCTGAGT TCCCAGAA GTACCCCCCT chr13:111527213-11152729 21 5.75e-05 GCTCCCCCTT TCCGGGAA ACTCTTCAAT chr19:17516522-17516602 46 5.75e-05 AGTTTCAGTT TCCCAGAA AGGAGGTGGG chr9:37587658-37587738 7 5.75e-05 gggagt tcccagaa tatagccaca chr21:42792460-42792540 54 5.75e-05 AACTGAATTG TCCGGGAA ATTCGCGGTG chr5:131832717-131832797 46 5.75e-05 TCGAGGAGTT TCCGGGAA CCGAACCACG chr20:36751433-36751513 47 5.75e-05 tgagcctgtt tcccagaa atgtgtgcat chr2:43195233-43195313 28 8.59e-05 GGCCAGTGGC TCCTGGAA ATTGGGCCGT chr9:108641622-108641702 62 8.59e-05 tcctgctgtt tcctggaa tcacctctga chr3:52115028-52115108 67 8.59e-05 ACCAGCAATT TCCTGGAA GCCATG chr9:101837852-101837932 44 8.59e-05 GGCCCTGAGT TCCAAGAA GGACCCAGAG chr16:19707833-19707913 24 8.59e-05 CCCGAGAGCT TCCTGGAA ATGACAGTTC chr6:15097482-15097562 21 8.59e-05 CTCAGCCTCT TCCTGGAA ACTGTGGCAT chr5:142965732-142965812 55 8.59e-05 GTTAAATATT TCCTGGAA ATTGCCTGAG chr16:31033978-31034058 16 8.59e-05 actttcactt tcctggaa gtctaaggcc chr4:73419413-73419493 14 8.59e-05 TCATTCTGCT TCCTGGAA ATGAGTCTGA chr7:4660190-4660270 50 8.59e-05 CCACACCCTT TCCTGGAA GCCAAGTCAC chr15:101137152-10113723 44 8.59e-05 cccacccatt tcctggaa accctctcct chr1:25682534-25682614 23 8.59e-05 tcacctgatt tcctggaa gagcctccta chr10:3975328-3975408 15 8.59e-05 TCATGCCAGT TCCAAGAA TTAACACTGC chr2:120989954-120990034 28 8.59e-05 ACGGCTAACT TCCAAGAA CTGGGGTGCT chr4:185395905-185395985 32 1.15e-04 TTTCATCATT TCTCGGAA AAGTCAATTT chr15:45020984-45021064 34 1.15e-04 CCTTCCCCTT TCTCGGAA AGCAGCTGGC chr2:231084680-231084760 50 1.15e-04 GGGCCGGGCT TCCGAGAA AAGAAAAGTG chr1:113480977-113481057 31 1.44e-04 AGATTCAAAG TCTAGGAA ACCTCACTTT chrX:40869521-40869601 12 1.44e-04 gaactccatt tcctagaa gcccctccct chr10:111827935-11182801 71 1.73e-04 TCACTTTGCT TCTCAGAA GT chr14:100841776-10084185 43 1.73e-04 TCACCCAGAT TCTCAGAA ACACTTGAGC chr16:3313869-3313949 68 1.73e-04 aatgggTTGT TCTGGGAA TTCGG chr2:240202065-240202145 24 1.73e-04 CAGAGCTGTT TCTGGGAA GCCAGCTCCA chr14:24630349-24630429 63 1.73e-04 CCACGTGATT TCTGGGAA AAGGCCCTCC chr2:74433422-74433502 48 1.73e-04 GACTCTGACT TCTGGGAA ATAGCTTTCA chr4:169239905-169239985 60 1.73e-04 TCCTTTCTCC TCTCAGAA GCACTTAGGT chr12:104995214-10499529 33 1.73e-04 ACCTGCCCAT TCTCAGAA GCCCAGCTTT chr13:43566410-43566490 16 1.73e-04 AGTTTCGGTT TCTCAGAA TCAGCAGCAG chr2:178107346-178107426 8 2.02e-04 GACTCAA TCTAAGAA ATATGATCCA chr15:57029742-57029822 18 2.02e-04 tccttcccct tctaagaa gtcatttgtt chr16:11406645-11406725 43 2.02e-04 ACTTTCAGTT TCTTGGAA AGGCTGTCCT chr2:38701242-38701322 23 2.02e-04 TGACGTCACT TCTAAGAA TTACTCAGGG chr14:97297408-97297488 33 2.02e-04 CTTGTGTGCT TCTAAGAA GTAGCTCCTG chr1:41311015-41311095 6 2.16e-04 ttccc tctgagaa gctgagaggc chr6:138043961-138044041 37 2.16e-04 GAGACAGCAT TCTGAGAA GGATCTAGAG chr11:5710927-5711007 45 2.16e-04 TTCTTTCACT TCTGAGAA TTTAACTTTC chr20:388926-389006 69 2.46e-04 AACTGGGGCC TCCCGGGA GGAG chr4:17578603-17578683 43 2.46e-04 AGTTTCTATT TCCCGGGA GTTGCCCAGC chr11:615624-615704 64 2.46e-04 CGGGTCAGGC TCCCGGGA AAGCGAAAC chr3:122283115-122283195 53 2.75e-04 GGGAGGGACC TCCAGGGA AGCGAAACTG chr2:202084928-202085008 35 2.87e-04 ctcatgcatt tcaaggaa atcacttctt chr4:38285513-38285593 50 2.87e-04 aaactgaaac tcaaggaa gtcagatgac chr3:172310126-172310206 55 3.32e-04 gggtggggat tcccagga aagagaaact chr17:76976022-76976102 2 3.32e-04 A TCCCAGGA AATGCTTCAG chr21:40159658-40159738 13 3.59e-04 CCTGGAGAGC TCAGGGAA GGCACGGTTT chr7:105924496-105924576 52 3.59e-04 ATTTTCCTTT TCACAGAA ATCCTGTAAT chr6:36315556-36315636 16 3.59e-04 GAGCCGTATT TCAGGGAA GGGGCGGGCC chr15:75417786-75417866 28 3.59e-04 GGttcccttt tcacagaa gaggaaacca chr14:97284357-97284437 36 4.18e-04 CCTGTTGAGA CCCAGGAA TGGATCCTTC chr11:78356411-78356491 69 4.18e-04 GAGCCTTGGA CCCAGGAA GAGC chr8:8864272-8864352 66 5.17e-04 GCATTACATT TCCAGTAA ATGTGTG chr19:893274-893354 3 5.17e-04 TT TCCAGTAA TTCCCAGCAG chr6:42013473-42013553 65 5.17e-04 TTGGCAGGGG CCCCAGAA CTTTCCCC chr9:32526259-32526339 9 5.17e-04 AGGGATTT TCCGAGGA AATGAGGCCG chr8:10488048-10488128 51 5.30e-04 GGAGCTGGGG TCAGAGAA GGGAGCTTTG chr22:36635601-36635681 5 6.18e-04 TATA CCCTGGAA TTCGAAAGGG chr1:110453367-110453447 44 6.18e-04 CAGGGTGATT TCCCATAA ACCACATGCC chr4:169401659-169401739 12 6.18e-04 TGAGTTTTTA TCTAGGGA GTTAGTTTCG chr2:201248606-201248686 5 6.18e-04 AATA CCCAAGAA CAGGAAAGTA chr19:50433356-50433436 56 7.20e-04 AGGCGGGGCC TCTGGGGA ATCGGGGGAG chr17:76254796-76254876 8 7.20e-04 TGCGGAT TCCTGTAA CGCTGGGCTG chr8:124049957-124050037 57 7.20e-04 GTAACACTTA TCTCAGGA TGACTGTCAG chr6:82462968-82463048 59 7.20e-04 TCTGGGCGAG CCCGAGAA GGCGCGGGGG chr5:119848599-119848679 45 7.20e-04 ggaggggatt tcctgtaa atggacaggc chr1:154580644-154580724 35 7.20e-04 GCTTTCGTTT CCTCGGAA AGCCTTCCCC chr2:163175193-163175273 31 7.20e-04 TCGATTCTCT TCTCAGGA CTTTGTAAAC chr21:38791953-38792033 26 7.20e-04 ACTTTCATTT TCCTGTAA GTCATTATGA chr18:60173632-60173712 73 7.20e-04 CAGTTCTGTT TCTCAGGA chr6:30457089-30457169 50 8.09e-04 TTCCCGTTCC TCTCGTAA CCTGGTCATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCNRGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:43398335-43398415 1.5e-05 33_[+3]_39 chr1:155163172-155163252 1.5e-05 29_[+3]_43 chr1:11851024-11851104 1.5e-05 26_[+3]_46 chr1:159047064-159047144 1.5e-05 51_[+3]_21 chr18:23570630-23570710 1.5e-05 62_[+3]_10 chr8:144629505-144629585 2.9e-05 39_[+3]_33 chr3:128268244-128268324 2.9e-05 63_[+3]_9 chr19:50880951-50881031 2.9e-05 33_[+3]_39 chr8:20060054-20060134 2.9e-05 35_[+3]_37 chr2:146481669-146481749 2.9e-05 20_[+3]_52 chr3:130791825-130791905 2.9e-05 65_[+3]_7 chr1:205216556-205216636 2.9e-05 48_[+3]_24 chr1:39251914-39251994 2.9e-05 36_[+3]_36 chr10:130397883-13039796 5.7e-05 49_[+3]_23 chr12:133179222-13317930 5.7e-05 5_[+3]_67 chr12:32174012-32174092 5.7e-05 70_[+3]_2 chr5:43040463-43040543 5.7e-05 16_[+3]_56 chr9:71584599-71584679 5.7e-05 30_[+3]_42 chr2:231200790-231200870 5.7e-05 17_[+3]_55 chr7:100145707-100145787 5.7e-05 49_[+3]_23 chr13:111527213-11152729 5.7e-05 20_[+3]_52 chr19:17516522-17516602 5.7e-05 45_[+3]_27 chr9:37587658-37587738 5.7e-05 6_[+3]_66 chr21:42792460-42792540 5.7e-05 53_[+3]_19 chr5:131832717-131832797 5.7e-05 45_[+3]_27 chr20:36751433-36751513 5.7e-05 46_[+3]_26 chr2:43195233-43195313 8.6e-05 27_[+3]_45 chr9:108641622-108641702 8.6e-05 61_[+3]_11 chr3:52115028-52115108 8.6e-05 66_[+3]_6 chr9:101837852-101837932 8.6e-05 43_[+3]_29 chr16:19707833-19707913 8.6e-05 23_[+3]_49 chr6:15097482-15097562 8.6e-05 20_[+3]_52 chr5:142965732-142965812 8.6e-05 54_[+3]_18 chr16:31033978-31034058 8.6e-05 15_[+3]_57 chr4:73419413-73419493 8.6e-05 13_[+3]_59 chr7:4660190-4660270 8.6e-05 49_[+3]_23 chr15:101137152-10113723 8.6e-05 43_[+3]_29 chr1:25682534-25682614 8.6e-05 22_[+3]_50 chr10:3975328-3975408 8.6e-05 14_[+3]_58 chr2:120989954-120990034 8.6e-05 27_[+3]_45 chr4:185395905-185395985 0.00011 31_[+3]_41 chr15:45020984-45021064 0.00011 33_[+3]_39 chr2:231084680-231084760 0.00011 49_[+3]_23 chr1:113480977-113481057 0.00014 30_[+3]_42 chrX:40869521-40869601 0.00014 11_[+3]_61 chr10:111827935-11182801 0.00017 70_[+3]_2 chr14:100841776-10084185 0.00017 42_[+3]_30 chr16:3313869-3313949 0.00017 67_[+3]_5 chr2:240202065-240202145 0.00017 23_[+3]_49 chr14:24630349-24630429 0.00017 62_[+3]_10 chr2:74433422-74433502 0.00017 47_[+3]_25 chr4:169239905-169239985 0.00017 59_[+3]_13 chr12:104995214-10499529 0.00017 32_[+3]_40 chr13:43566410-43566490 0.00017 15_[+3]_57 chr2:178107346-178107426 0.0002 7_[+3]_65 chr15:57029742-57029822 0.0002 17_[+3]_55 chr16:11406645-11406725 0.0002 42_[+3]_30 chr2:38701242-38701322 0.0002 22_[+3]_50 chr14:97297408-97297488 0.0002 32_[+3]_40 chr1:41311015-41311095 0.00022 5_[+3]_67 chr6:138043961-138044041 0.00022 36_[+3]_36 chr11:5710927-5711007 0.00022 44_[+3]_28 chr20:388926-389006 0.00025 68_[+3]_4 chr4:17578603-17578683 0.00025 42_[+3]_30 chr11:615624-615704 0.00025 63_[+3]_9 chr3:122283115-122283195 0.00027 52_[+3]_20 chr2:202084928-202085008 0.00029 34_[+3]_38 chr4:38285513-38285593 0.00029 49_[+3]_23 chr3:172310126-172310206 0.00033 54_[+3]_18 chr17:76976022-76976102 0.00033 1_[+3]_71 chr21:40159658-40159738 0.00036 12_[+3]_60 chr7:105924496-105924576 0.00036 51_[+3]_21 chr6:36315556-36315636 0.00036 15_[+3]_57 chr15:75417786-75417866 0.00036 27_[+3]_45 chr14:97284357-97284437 0.00042 35_[+3]_37 chr11:78356411-78356491 0.00042 68_[+3]_4 chr8:8864272-8864352 0.00052 65_[+3]_7 chr19:893274-893354 0.00052 2_[+3]_70 chr6:42013473-42013553 0.00052 64_[+3]_8 chr9:32526259-32526339 0.00052 8_[+3]_64 chr8:10488048-10488128 0.00053 50_[+3]_22 chr22:36635601-36635681 0.00062 4_[+3]_68 chr1:110453367-110453447 0.00062 43_[+3]_29 chr4:169401659-169401739 0.00062 11_[+3]_61 chr2:201248606-201248686 0.00062 4_[+3]_68 chr19:50433356-50433436 0.00072 55_[+3]_17 chr17:76254796-76254876 0.00072 7_[+3]_65 chr8:124049957-124050037 0.00072 56_[+3]_16 chr6:82462968-82463048 0.00072 58_[+3]_14 chr5:119848599-119848679 0.00072 44_[+3]_28 chr1:154580644-154580724 0.00072 34_[+3]_38 chr2:163175193-163175273 0.00072 30_[+3]_42 chr21:38791953-38792033 0.00072 25_[+3]_47 chr18:60173632-60173712 0.00072 72_[+3] chr6:30457089-30457169 0.00081 49_[+3]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCNRGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCNRGAA width=8 seqs=95 chr15:43398335-43398415 ( 34) TCCCGGAA 1 chr1:155163172-155163252 ( 30) TCCCGGAA 1 chr1:11851024-11851104 ( 27) TCCCGGAA 1 chr1:159047064-159047144 ( 52) TCCCGGAA 1 chr18:23570630-23570710 ( 63) TCCCGGAA 1 chr8:144629505-144629585 ( 40) TCCAGGAA 1 chr3:128268244-128268324 ( 64) TCCAGGAA 1 chr19:50880951-50881031 ( 34) TCCAGGAA 1 chr8:20060054-20060134 ( 36) TCCAGGAA 1 chr2:146481669-146481749 ( 21) TCCAGGAA 1 chr3:130791825-130791905 ( 66) TCCAGGAA 1 chr1:205216556-205216636 ( 49) TCCAGGAA 1 chr1:39251914-39251994 ( 37) TCCAGGAA 1 chr10:130397883-13039796 ( 50) TCCCAGAA 1 chr12:133179222-13317930 ( 6) TCCGGGAA 1 chr12:32174012-32174092 ( 71) TCCCAGAA 1 chr5:43040463-43040543 ( 17) TCCGGGAA 1 chr9:71584599-71584679 ( 31) TCCGGGAA 1 chr2:231200790-231200870 ( 18) TCCCAGAA 1 chr7:100145707-100145787 ( 50) TCCCAGAA 1 chr13:111527213-11152729 ( 21) TCCGGGAA 1 chr19:17516522-17516602 ( 46) TCCCAGAA 1 chr9:37587658-37587738 ( 7) TCCCAGAA 1 chr21:42792460-42792540 ( 54) TCCGGGAA 1 chr5:131832717-131832797 ( 46) TCCGGGAA 1 chr20:36751433-36751513 ( 47) TCCCAGAA 1 chr2:43195233-43195313 ( 28) TCCTGGAA 1 chr9:108641622-108641702 ( 62) TCCTGGAA 1 chr3:52115028-52115108 ( 67) TCCTGGAA 1 chr9:101837852-101837932 ( 44) TCCAAGAA 1 chr16:19707833-19707913 ( 24) TCCTGGAA 1 chr6:15097482-15097562 ( 21) TCCTGGAA 1 chr5:142965732-142965812 ( 55) TCCTGGAA 1 chr16:31033978-31034058 ( 16) TCCTGGAA 1 chr4:73419413-73419493 ( 14) TCCTGGAA 1 chr7:4660190-4660270 ( 50) TCCTGGAA 1 chr15:101137152-10113723 ( 44) TCCTGGAA 1 chr1:25682534-25682614 ( 23) TCCTGGAA 1 chr10:3975328-3975408 ( 15) TCCAAGAA 1 chr2:120989954-120990034 ( 28) TCCAAGAA 1 chr4:185395905-185395985 ( 32) TCTCGGAA 1 chr15:45020984-45021064 ( 34) TCTCGGAA 1 chr2:231084680-231084760 ( 50) TCCGAGAA 1 chr1:113480977-113481057 ( 31) TCTAGGAA 1 chrX:40869521-40869601 ( 12) TCCTAGAA 1 chr10:111827935-11182801 ( 71) TCTCAGAA 1 chr14:100841776-10084185 ( 43) TCTCAGAA 1 chr16:3313869-3313949 ( 68) TCTGGGAA 1 chr2:240202065-240202145 ( 24) TCTGGGAA 1 chr14:24630349-24630429 ( 63) TCTGGGAA 1 chr2:74433422-74433502 ( 48) TCTGGGAA 1 chr4:169239905-169239985 ( 60) TCTCAGAA 1 chr12:104995214-10499529 ( 33) TCTCAGAA 1 chr13:43566410-43566490 ( 16) TCTCAGAA 1 chr2:178107346-178107426 ( 8) TCTAAGAA 1 chr15:57029742-57029822 ( 18) TCTAAGAA 1 chr16:11406645-11406725 ( 43) TCTTGGAA 1 chr2:38701242-38701322 ( 23) TCTAAGAA 1 chr14:97297408-97297488 ( 33) TCTAAGAA 1 chr1:41311015-41311095 ( 6) TCTGAGAA 1 chr6:138043961-138044041 ( 37) TCTGAGAA 1 chr11:5710927-5711007 ( 45) TCTGAGAA 1 chr20:388926-389006 ( 69) TCCCGGGA 1 chr4:17578603-17578683 ( 43) TCCCGGGA 1 chr11:615624-615704 ( 64) TCCCGGGA 1 chr3:122283115-122283195 ( 53) TCCAGGGA 1 chr2:202084928-202085008 ( 35) TCAAGGAA 1 chr4:38285513-38285593 ( 50) TCAAGGAA 1 chr3:172310126-172310206 ( 55) TCCCAGGA 1 chr17:76976022-76976102 ( 2) TCCCAGGA 1 chr21:40159658-40159738 ( 13) TCAGGGAA 1 chr7:105924496-105924576 ( 52) TCACAGAA 1 chr6:36315556-36315636 ( 16) TCAGGGAA 1 chr15:75417786-75417866 ( 28) TCACAGAA 1 chr14:97284357-97284437 ( 36) CCCAGGAA 1 chr11:78356411-78356491 ( 69) CCCAGGAA 1 chr8:8864272-8864352 ( 66) TCCAGTAA 1 chr19:893274-893354 ( 3) TCCAGTAA 1 chr6:42013473-42013553 ( 65) CCCCAGAA 1 chr9:32526259-32526339 ( 9) TCCGAGGA 1 chr8:10488048-10488128 ( 51) TCAGAGAA 1 chr22:36635601-36635681 ( 5) CCCTGGAA 1 chr1:110453367-110453447 ( 44) TCCCATAA 1 chr4:169401659-169401739 ( 12) TCTAGGGA 1 chr2:201248606-201248686 ( 5) CCCAAGAA 1 chr19:50433356-50433436 ( 56) TCTGGGGA 1 chr17:76254796-76254876 ( 8) TCCTGTAA 1 chr8:124049957-124050037 ( 57) TCTCAGGA 1 chr6:82462968-82463048 ( 59) CCCGAGAA 1 chr5:119848599-119848679 ( 45) TCCTGTAA 1 chr1:154580644-154580724 ( 35) CCTCGGAA 1 chr2:163175193-163175273 ( 31) TCTCAGGA 1 chr21:38791953-38792033 ( 26) TCCTGTAA 1 chr18:60173632-60173712 ( 73) TCTCAGGA 1 chr6:30457089-30457169 ( 50) TCTCGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCNRGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 3.9e-037 -1321 -179 -1321 183 -1321 197 -1321 -1321 -169 133 -1321 13 15 44 -23 -54 72 -1321 130 -1321 -1321 -1321 190 -182 188 -1321 -97 -1321 208 -1321 -1321 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCNRGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 3.9e-037 0.000000 0.073684 0.000000 0.926316 0.000000 1.000000 0.000000 0.000000 0.073684 0.642105 0.000000 0.284211 0.263158 0.347368 0.210526 0.178947 0.389474 0.000000 0.610526 0.000000 0.000000 0.000000 0.926316 0.073684 0.873684 0.000000 0.126316 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCNRGAA MEME-3 regular expression -------------------------------------------------------------------------------- TC[CT][CAG][GA]GAA -------------------------------------------------------------------------------- Time 12.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGMGGRG MEME-4 width = 8 sites = 36 llr = 309 E-value = 2.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGMGGRG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::5::51 pos.-specific C :::3:::: probability G 9aa:aa59 matrix T :::1:::: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 *** ** * Relative 1.2 *** ** * Entropy 1.0 *** **** (12.4 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGGAG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGRG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:158979597-158979677 70 1.31e-05 AAACACTGGT GGGAGGAG TCT chr10:104541114-10454119 18 1.31e-05 ccacccatga gggaggag gtcttatctc chr3:5539328-5539408 69 1.31e-05 GATTGCAATA GGGAGGAG ACAG chr12:104995214-10499529 1 1.31e-05 . GGGAGGAG CCTCCTGGGG chr17:40264721-40264801 34 1.31e-05 TGAAACTGAG GGGAGGAG CCAGCTGAGC chr11:4414888-4414968 59 1.31e-05 ggaaagggga gggaggag gaggagccgt chr3:122283115-122283195 11 1.31e-05 AGACAGCACA GGGAGGAG GGGGAAGCGG chr8:144105611-144105691 1 1.31e-05 . GGGAGGAG CCCAGCGCCT chr19:50433356-50433436 69 2.67e-05 GGGGAATCGG GGGAGGGG CGGA chr1:159047064-159047144 20 2.67e-05 tgtaatcaag gggagggg ttttctggga chr5:119848599-119848679 34 2.67e-05 ctataataaa gggagggg atttcctgta chr17:33571503-33571583 5 4.08e-05 AAGG GGGCGGAG GCTGTGCCTG chr17:80408772-80408852 22 4.08e-05 TCCGGGATCC GGGCGGAG CCGCAGGAGG chr19:10196906-10196986 10 4.08e-05 GCGGAGCCA GGGCGGAG CCAGCGCGCC chr2:231280861-231280941 14 4.08e-05 TTCCCCATTT GGGCGGAG CCCTTTCTGA chr21:42792460-42792540 73 4.08e-05 TTCGCGGTGG GGGCGGAG chr6:43597842-43597922 30 5.55e-05 ACCACCACGA GGGCGGGG CAGTGGCCGG chr9:100881469-100881549 35 5.55e-05 CCGGGACACA GGGCGGGG CTCCCAAGGG chr22:18632796-18632876 63 5.55e-05 AACGAAAGCT GGGCGGGG TGCCACGAGC chr19:47760176-47760256 8 5.55e-05 GCTCTGT GGGCGGGG CCAGAAAGTT chr6:10838819-10838899 65 5.55e-05 GCCTTCCCCG GGGCGGGG CTTCATGG chr12:113416258-11341633 41 6.99e-05 TCGCTGCAGT GGGTGGAG AGAGGCCTCT chr3:172310126-172310206 45 8.49e-05 gaagagtagc gggtgggg attcccagga chr8:144629505-144629585 50 8.49e-05 tccaggaaag gggtgggg agttcctgga chr22:46589828-46589908 63 8.49e-05 TAATAGGAAG GGGTGGGG ACTTCCCCGG chr6:100706003-100706083 41 8.49e-05 CAAATGATGA GGGTGGGG AAAAAAAGAG chr5:131831520-131831600 49 1.10e-04 CACCGCCGTT GGGAGGAA AGAGAACTCA chr2:120989954-120990034 8 1.10e-04 GTCTGCG AGGAGGAG AAACGGCTAA chr21:45275157-45275237 54 1.36e-04 CTTCCCAGGC AGGAGGGG TGTGGTCTGA chr1:154580644-154580724 72 1.36e-04 TTTGGCCAAG AGGAGGGG C chr2:163175193-163175273 64 1.36e-04 CTGCCTGGCG GGGAGGGA GTTTCCTCA chr11:5646123-5646203 54 1.36e-04 CTCCTCAGGA GGGAGGGA CTTCTTCACA chr11:320889-320969 64 1.63e-04 GGCCAGATGA GGGCGGAA CAAATTCCT chr9:32526259-32526339 33 1.63e-04 GCCGGACGCG AGGCGGAG CTGCATAGGA chr6:36315556-36315636 1 2.43e-04 . GGAAGGAG CCGTATTTCA chr3:130791825-130791905 10 2.98e-04 ATGTGCTTG GGGAAGGG CTTTGCATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGRG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:158979597-158979677 1.3e-05 69_[+4]_3 chr10:104541114-10454119 1.3e-05 17_[+4]_55 chr3:5539328-5539408 1.3e-05 68_[+4]_4 chr12:104995214-10499529 1.3e-05 [+4]_72 chr17:40264721-40264801 1.3e-05 33_[+4]_39 chr11:4414888-4414968 1.3e-05 58_[+4]_14 chr3:122283115-122283195 1.3e-05 10_[+4]_62 chr8:144105611-144105691 1.3e-05 [+4]_72 chr19:50433356-50433436 2.7e-05 68_[+4]_4 chr1:159047064-159047144 2.7e-05 19_[+4]_53 chr5:119848599-119848679 2.7e-05 33_[+4]_39 chr17:33571503-33571583 4.1e-05 4_[+4]_68 chr17:80408772-80408852 4.1e-05 21_[+4]_51 chr19:10196906-10196986 4.1e-05 9_[+4]_63 chr2:231280861-231280941 4.1e-05 13_[+4]_59 chr21:42792460-42792540 4.1e-05 72_[+4] chr6:43597842-43597922 5.6e-05 29_[+4]_43 chr9:100881469-100881549 5.6e-05 34_[+4]_38 chr22:18632796-18632876 5.6e-05 62_[+4]_10 chr19:47760176-47760256 5.6e-05 7_[+4]_65 chr6:10838819-10838899 5.6e-05 64_[+4]_8 chr12:113416258-11341633 7e-05 40_[+4]_32 chr3:172310126-172310206 8.5e-05 44_[+4]_28 chr8:144629505-144629585 8.5e-05 49_[+4]_23 chr22:46589828-46589908 8.5e-05 62_[+4]_10 chr6:100706003-100706083 8.5e-05 40_[+4]_32 chr5:131831520-131831600 0.00011 48_[+4]_24 chr2:120989954-120990034 0.00011 7_[+4]_65 chr21:45275157-45275237 0.00014 53_[+4]_19 chr1:154580644-154580724 0.00014 71_[+4]_1 chr2:163175193-163175273 0.00014 63_[+4]_9 chr11:5646123-5646203 0.00014 53_[+4]_19 chr11:320889-320969 0.00016 63_[+4]_9 chr9:32526259-32526339 0.00016 32_[+4]_40 chr6:36315556-36315636 0.00024 [+4]_72 chr3:130791825-130791905 0.0003 9_[+4]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGRG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGMGGRG width=8 seqs=36 chr1:158979597-158979677 ( 70) GGGAGGAG 1 chr10:104541114-10454119 ( 18) GGGAGGAG 1 chr3:5539328-5539408 ( 69) GGGAGGAG 1 chr12:104995214-10499529 ( 1) GGGAGGAG 1 chr17:40264721-40264801 ( 34) GGGAGGAG 1 chr11:4414888-4414968 ( 59) GGGAGGAG 1 chr3:122283115-122283195 ( 11) GGGAGGAG 1 chr8:144105611-144105691 ( 1) GGGAGGAG 1 chr19:50433356-50433436 ( 69) GGGAGGGG 1 chr1:159047064-159047144 ( 20) GGGAGGGG 1 chr5:119848599-119848679 ( 34) GGGAGGGG 1 chr17:33571503-33571583 ( 5) GGGCGGAG 1 chr17:80408772-80408852 ( 22) GGGCGGAG 1 chr19:10196906-10196986 ( 10) GGGCGGAG 1 chr2:231280861-231280941 ( 14) GGGCGGAG 1 chr21:42792460-42792540 ( 73) GGGCGGAG 1 chr6:43597842-43597922 ( 30) GGGCGGGG 1 chr9:100881469-100881549 ( 35) GGGCGGGG 1 chr22:18632796-18632876 ( 63) GGGCGGGG 1 chr19:47760176-47760256 ( 8) GGGCGGGG 1 chr6:10838819-10838899 ( 65) GGGCGGGG 1 chr12:113416258-11341633 ( 41) GGGTGGAG 1 chr3:172310126-172310206 ( 45) GGGTGGGG 1 chr8:144629505-144629585 ( 50) GGGTGGGG 1 chr22:46589828-46589908 ( 63) GGGTGGGG 1 chr6:100706003-100706083 ( 41) GGGTGGGG 1 chr5:131831520-131831600 ( 49) GGGAGGAA 1 chr2:120989954-120990034 ( 8) AGGAGGAG 1 chr21:45275157-45275237 ( 54) AGGAGGGG 1 chr1:154580644-154580724 ( 72) AGGAGGGG 1 chr2:163175193-163175273 ( 64) GGGAGGGA 1 chr11:5646123-5646203 ( 54) GGGAGGGA 1 chr11:320889-320969 ( 64) GGGCGGAA 1 chr9:32526259-32526339 ( 33) AGGCGGAG 1 chr6:36315556-36315636 ( 1) GGAAGGAG 1 chr3:130791825-130791905 ( 10) GGGAAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGRG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 2.1e-008 -109 -1181 184 -1181 -1181 -1181 201 -1181 -309 -1181 197 -1181 115 39 -1181 -90 -309 -1181 197 -1181 -1181 -1181 201 -1181 115 -1181 93 -1181 -109 -1181 184 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGRG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.1e-008 0.111111 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.027778 0.000000 0.972222 0.000000 0.527778 0.333333 0.000000 0.138889 0.027778 0.000000 0.972222 0.000000 0.000000 0.000000 1.000000 0.000000 0.527778 0.000000 0.472222 0.000000 0.111111 0.000000 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGRG MEME-4 regular expression -------------------------------------------------------------------------------- GGG[AC]GG[AG]G -------------------------------------------------------------------------------- Time 15.65 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTTCCCC MEME-5 width = 8 sites = 35 llr = 296 E-value = 1.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTTCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2::::::1 pos.-specific C 781:aaa8 probability G 1::1:::: matrix T :299:::1 bits 2.1 1.9 *** 1.7 **** 1.5 ***** Relative 1.2 ****** Entropy 1.0 ******* (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:45020984-45021064 24 1.86e-05 GCAACCCTGC CCTTCCCC TTTCTCGGAA chr1:173640230-173640310 15 1.86e-05 catcttgtct ccttcccc actttaagtt chr15:57029742-57029822 9 1.86e-05 tttctgct ccttcccc ttctaagaag chr6:10838819-10838899 56 1.86e-05 GCAGGCCCCG CCTTCCCC GGGGCGGGGC chr1:154580644-154580724 45 1.86e-05 CCTCGGAAAG CCTTCCCC TCCGGAAAGT chr5:84943753-84943833 28 1.86e-05 taacccatcg ccttcccc gcttaagttt chr3:5191290-5191370 19 1.86e-05 atcctcgtcc ccttcccc acttaagttt chr10:91087596-91087676 58 1.86e-05 GTTTCCTCTT CCTTCCCC TAAAAGCAAT chr20:35579210-35579290 35 1.86e-05 caagccagtt ccttcccc ttcaggaaaa chr22:46589828-46589908 71 3.59e-05 AGGGGTGGGG ACTTCCCC GG chr1:150534652-150534732 34 3.59e-05 GGCTCAGCTG ACTTCCCC GAAGCTCCCC chr1:169337688-169337768 36 3.59e-05 TTAGGTTTCG ACTTCCCC GGACAGCAAA chr13:43566410-43566490 53 3.59e-05 GCCCCAGAGA ACTTCCCC ACGTATTCTC chr1:54842905-54842985 27 5.48e-05 GTGCTCCTCC CTTTCCCC ACAAGGTCTG chr6:42013473-42013553 73 5.48e-05 GGCCCCAGAA CTTTCCCC chr13:50069997-50070077 19 5.48e-05 GCACACCCAA CTTTCCCC GGGCCGGCTA chr3:48514465-48514545 1 5.48e-05 . CTTTCCCC TCTTCCCATC chr10:91092184-91092264 61 5.48e-05 TTTCACTTTC CTTTCCCC TTTCATAAAA chr16:11406645-11406725 58 7.38e-05 GAAAGGCTGT CCTTCCCT ACTCCAAGCC chr3:172312531-172312611 71 7.38e-05 CTCTTTCCGA CCTTCCCT CC chr2:37384102-37384182 41 7.38e-05 TTGGACTCCG CCTTCCCT GCAGCCGCCC chr6:16237003-16237083 29 7.38e-05 AGTTTCATTT CCTTCCCT GAAACTTCAT chr1:155163172-155163252 14 9.20e-05 GTTTTGGGCT CCCTCCCC CCACCACTTC chrX:48794423-48794503 22 9.20e-05 CTCTCCCCCG CCCTCCCC AGCGGCATTT chr11:356348-356428 34 9.20e-05 ACGAGGCGGC CCCTCCCC GCTTCCGGCC chrX:154014320-154014400 17 9.20e-05 GCATGGTTAA CCCTCCCC CACCCATTAT chr4:185395905-185395985 57 1.27e-04 TTTCATTTTC GCTTCCCC AGGTCGCGGC chr21:45275157-45275237 43 1.27e-04 CTGTGTGGTG CCTTCCCA GGCAGGAGGG chr9:90289647-90289727 22 1.27e-04 TCTTATCTGG CCTTCCCA GACCGTGAAT chr17:53644721-53644801 21 1.27e-04 AAATGAAACT GCTTCCCC ACAAGAACAG chr8:145060564-145060644 17 1.45e-04 GACTCCTGTG CCTGCCCC TCAGCAAGCC chr17:40264721-40264801 72 1.45e-04 ATCTCCTATC CCTGCCCC A chr1:205216556-205216636 5 1.63e-04 TGCC ATTTCCCC TTCAGTTGCA chr1:41311015-41311095 27 1.99e-04 gagaggcaca tcttcccc taccacCCAC chr2:38701242-38701322 53 1.99e-04 TCTGAAGGGG ACTTCCCT TCGTAACCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:45020984-45021064 1.9e-05 23_[+5]_49 chr1:173640230-173640310 1.9e-05 14_[+5]_58 chr15:57029742-57029822 1.9e-05 8_[+5]_64 chr6:10838819-10838899 1.9e-05 55_[+5]_17 chr1:154580644-154580724 1.9e-05 44_[+5]_28 chr5:84943753-84943833 1.9e-05 27_[+5]_45 chr3:5191290-5191370 1.9e-05 18_[+5]_54 chr10:91087596-91087676 1.9e-05 57_[+5]_15 chr20:35579210-35579290 1.9e-05 34_[+5]_38 chr22:46589828-46589908 3.6e-05 70_[+5]_2 chr1:150534652-150534732 3.6e-05 33_[+5]_39 chr1:169337688-169337768 3.6e-05 35_[+5]_37 chr13:43566410-43566490 3.6e-05 52_[+5]_20 chr1:54842905-54842985 5.5e-05 26_[+5]_46 chr6:42013473-42013553 5.5e-05 72_[+5] chr13:50069997-50070077 5.5e-05 18_[+5]_54 chr3:48514465-48514545 5.5e-05 [+5]_72 chr10:91092184-91092264 5.5e-05 60_[+5]_12 chr16:11406645-11406725 7.4e-05 57_[+5]_15 chr3:172312531-172312611 7.4e-05 70_[+5]_2 chr2:37384102-37384182 7.4e-05 40_[+5]_32 chr6:16237003-16237083 7.4e-05 28_[+5]_44 chr1:155163172-155163252 9.2e-05 13_[+5]_59 chrX:48794423-48794503 9.2e-05 21_[+5]_51 chr11:356348-356428 9.2e-05 33_[+5]_39 chrX:154014320-154014400 9.2e-05 16_[+5]_56 chr4:185395905-185395985 0.00013 56_[+5]_16 chr21:45275157-45275237 0.00013 42_[+5]_30 chr9:90289647-90289727 0.00013 21_[+5]_51 chr17:53644721-53644801 0.00013 20_[+5]_52 chr8:145060564-145060644 0.00015 16_[+5]_56 chr17:40264721-40264801 0.00015 71_[+5]_1 chr1:205216556-205216636 0.00016 4_[+5]_68 chr1:41311015-41311095 0.0002 26_[+5]_46 chr2:38701242-38701322 0.0002 52_[+5]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTTCCCC width=8 seqs=35 chr15:45020984-45021064 ( 24) CCTTCCCC 1 chr1:173640230-173640310 ( 15) CCTTCCCC 1 chr15:57029742-57029822 ( 9) CCTTCCCC 1 chr6:10838819-10838899 ( 56) CCTTCCCC 1 chr1:154580644-154580724 ( 45) CCTTCCCC 1 chr5:84943753-84943833 ( 28) CCTTCCCC 1 chr3:5191290-5191370 ( 19) CCTTCCCC 1 chr10:91087596-91087676 ( 58) CCTTCCCC 1 chr20:35579210-35579290 ( 35) CCTTCCCC 1 chr22:46589828-46589908 ( 71) ACTTCCCC 1 chr1:150534652-150534732 ( 34) ACTTCCCC 1 chr1:169337688-169337768 ( 36) ACTTCCCC 1 chr13:43566410-43566490 ( 53) ACTTCCCC 1 chr1:54842905-54842985 ( 27) CTTTCCCC 1 chr6:42013473-42013553 ( 73) CTTTCCCC 1 chr13:50069997-50070077 ( 19) CTTTCCCC 1 chr3:48514465-48514545 ( 1) CTTTCCCC 1 chr10:91092184-91092264 ( 61) CTTTCCCC 1 chr16:11406645-11406725 ( 58) CCTTCCCT 1 chr3:172312531-172312611 ( 71) CCTTCCCT 1 chr2:37384102-37384182 ( 41) CCTTCCCT 1 chr6:16237003-16237083 ( 29) CCTTCCCT 1 chr1:155163172-155163252 ( 14) CCCTCCCC 1 chrX:48794423-48794503 ( 22) CCCTCCCC 1 chr11:356348-356428 ( 34) CCCTCCCC 1 chrX:154014320-154014400 ( 17) CCCTCCCC 1 chr4:185395905-185395985 ( 57) GCTTCCCC 1 chr21:45275157-45275237 ( 43) CCTTCCCA 1 chr9:90289647-90289727 ( 22) CCTTCCCA 1 chr17:53644721-53644801 ( 21) GCTTCCCC 1 chr8:145060564-145060644 ( 17) CCTGCCCC 1 chr17:40264721-40264801 ( 72) CCTGCCCC 1 chr1:205216556-205216636 ( 5) ATTTCCCC 1 chr1:41311015-41311095 ( 27) TCTTCCCC 1 chr2:38701242-38701322 ( 53) ACTTCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4104 E= 1.4e-004 -47 154 -211 -318 -1177 170 -1177 -60 -1177 -116 -1177 177 -1177 -1177 -211 186 -1177 197 -1177 -1177 -1177 197 -1177 -1177 -1177 197 -1177 -1177 -205 165 -1177 -86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.4e-004 0.171429 0.742857 0.057143 0.028571 0.000000 0.828571 0.000000 0.171429 0.000000 0.114286 0.000000 0.885714 0.000000 0.000000 0.057143 0.942857 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.057143 0.800000 0.000000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCCC MEME-5 regular expression -------------------------------------------------------------------------------- CCTTCCCC -------------------------------------------------------------------------------- Time 18.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:36751433-36751513 2.74e-02 46_[+3(5.75e-05)]_26 chr14:94576953-94577033 2.96e-05 20_[+2(5.68e-05)]_7_[+1(1.14e-05)]_\ 37 chr16:50699378-50699458 4.59e-02 10_[+2(5.68e-05)]_62 chr8:144105611-144105691 1.22e-03 [+4(1.31e-05)]_58_[+2(1.95e-05)]_6 chr2:26716578-26716658 1.23e-02 68_[+1(1.14e-05)]_4 chr12:113344716-11334479 5.43e-03 34_[+1(2.26e-05)]_38 chr11:57333733-57333813 9.58e-03 58_[+1(1.14e-05)]_14 chr8:29957319-29957399 1.18e-03 48_[+3(2.87e-05)]_24 chr3:122399591-122399671 1.78e-03 30_[+1(9.20e-05)]_23_[+1(2.26e-05)]_\ 11 chr4:89300521-89300601 9.04e-04 13_[+2(1.95e-05)]_21_[+2(5.68e-05)]_\ 15_[+1(7.07e-05)]_7 chr20:35579210-35579290 4.96e-06 34_[+5(1.86e-05)]_28_[+1(4.70e-05)]_\ 2 chr15:92015887-92015967 1.40e-02 1_[+2(1.95e-05)]_71 chr11:615624-615704 7.13e-03 71_[+1(7.07e-05)]_1 chr3:122283115-122283195 2.00e-04 10_[+4(1.31e-05)]_47_[+1(3.49e-05)]_\ 7 chr5:131832717-131832797 5.33e-02 45_[+3(5.75e-05)]_27 chr1:185303422-185303502 3.99e-02 21_[+2(1.95e-05)]_51 chr10:91174277-91174357 3.40e-01 2_[+2(5.68e-05)]_33_[+2(7.46e-05)]_\ 29 chrX:154014320-154014400 6.94e-03 16_[+5(9.20e-05)]_56 chr21:42792460-42792540 3.86e-07 5_[+2(9.47e-05)]_18_[+1(1.14e-05)]_\ 14_[+3(5.75e-05)]_11_[+4(4.08e-05)] chr10:91152280-91152360 4.12e-01 80 chr11:5646123-5646203 2.03e-03 23_[+2(3.82e-05)]_49 chr7:87834677-87834757 9.59e-03 33_[+1(3.49e-05)]_39 chr18:60173632-60173712 2.38e-02 29_[+2(1.95e-05)]_22_[+2(7.46e-05)]_\ 13 chr7:92776933-92777013 4.73e-02 38_[+2(1.95e-05)]_34 chr10:91087596-91087676 6.62e-04 1_[+2(3.82e-05)]_48_[+5(1.86e-05)]_\ 15 chr15:81400328-81400408 1.17e-02 80 chr10:25156300-25156380 1.93e-02 40_[+2(3.82e-05)]_32 chr2:97151920-97152000 3.00e-03 35_[+1(7.07e-05)]_37 chr2:7017716-7017796 2.52e-03 46_[+2(7.46e-05)]_26 chr11:4414888-4414968 3.49e-04 17_[+2(7.46e-05)]_33_[+4(1.31e-05)]_\ 14 chr15:74287073-74287153 1.02e-02 80 chr13:43566410-43566490 3.83e-04 7_[+2(5.68e-05)]_37_[+5(3.59e-05)]_\ 20 chr1:39251914-39251994 1.00e-02 36_[+3(2.87e-05)]_36 chr10:91092184-91092264 3.62e-03 7_[+2(7.46e-05)]_45_[+5(5.48e-05)]_\ 12 chr2:231084680-231084760 3.35e-03 62_[+1(5.89e-05)]_10 chr2:120989954-120990034 4.76e-05 27_[+3(8.59e-05)]_36_[+1(3.49e-05)]_\ 1 chr11:5710927-5711007 5.18e-03 58_[+2(1.95e-05)]_14 chr2:231280861-231280941 2.68e-02 13_[+4(4.08e-05)]_59 chr17:26595413-26595493 1.54e-02 48_[+1(2.26e-05)]_24 chr1:205216556-205216636 6.01e-04 48_[+3(2.87e-05)]_24 chr17:40264721-40264801 8.57e-05 20_[+1(3.49e-05)]_5_[+4(1.31e-05)]_\ 39 chr10:25026143-25026223 1.00e-01 80 chr7:92747390-92747470 3.07e-03 34_[+2(3.82e-05)]_38 chr15:75417786-75417866 1.66e-03 80 chr1:169337688-169337768 1.28e-02 35_[+5(3.59e-05)]_37 chr2:201248606-201248686 1.75e-02 50_[+1(2.26e-05)]_22 chr6:16237003-16237083 4.60e-05 20_[+2(3.82e-05)]_[+5(7.38e-05)]_44 chr11:78356411-78356491 1.86e-01 80 chr6:47382626-47382706 5.77e-03 15_[+2(1.95e-05)]_57 chr12:104995214-10499529 1.12e-04 [+4(1.31e-05)]_72 chr12:14437631-14437711 2.63e-03 67_[+1(9.20e-05)]_5 chr18:2641792-2641872 5.63e-02 12_[+2(5.68e-05)]_17_[+2(3.82e-05)]_\ 35 chr11:356348-356428 1.05e-01 33_[+5(9.20e-05)]_39 chr12:121477040-12147712 1.02e-01 80 chr2:37384102-37384182 6.67e-03 17_[+2(1.95e-05)]_15_[+5(7.38e-05)]_\ 32 chr12:113376110-11337619 4.71e-03 21_[+1(2.26e-05)]_51 chr1:21670076-21670156 5.21e-02 47_[+1(3.49e-05)]_25 chr6:99281979-99282059 8.37e-04 56_[+1(2.26e-05)]_16 chr7:120640164-120640244 3.01e-03 39_[+2(1.95e-05)]_33 chr3:5191290-5191370 8.13e-05 18_[+5(1.86e-05)]_34_[+2(9.47e-05)]_\ 12 chr21:38791953-38792033 1.02e-02 17_[+2(3.82e-05)]_55 chr5:84943753-84943833 1.45e-04 27_[+5(1.86e-05)]_45 chr9:32526259-32526339 4.42e-03 80 chr8:144107935-144108015 3.34e-02 20_[+2(7.46e-05)]_52 chr3:130791825-130791905 6.76e-03 65_[+3(2.87e-05)]_7 chr10:80719149-80719229 1.66e-01 66_[+1(5.89e-05)]_6 chr14:97297408-97297488 1.95e-01 80 chr4:169401659-169401739 1.89e-02 24_[+2(5.68e-05)]_48 chr10:3975328-3975408 1.55e-03 14_[+3(8.59e-05)]_23_[+2(9.47e-05)]_\ 27 chr7:149552512-149552592 1.17e-01 80 chr17:41158745-41158825 1.51e-03 40_[+1(1.14e-05)]_32 chr4:17578603-17578683 2.22e-02 80 chr2:163175193-163175273 5.01e-04 80 chr4:38285513-38285593 4.72e-03 40_[+1(3.49e-05)]_32 chr3:172312531-172312611 5.41e-04 40_[+2(1.95e-05)]_22_[+5(7.38e-05)]_\ 2 chr17:76976022-76976102 2.93e-02 80 chr6:168241682-168241762 3.78e-03 55_[+1(1.14e-05)]_17 chr1:25682534-25682614 1.11e-02 22_[+3(8.59e-05)]_50 chr17:30454493-30454573 5.64e-02 80 chr11:113244756-11324483 3.44e-02 20_[+1(1.14e-05)]_52 chr2:38701242-38701322 1.20e-02 80 chr11:117043917-11704399 3.44e-02 80 chr4:169239905-169239985 3.49e-03 41_[+2(5.68e-05)]_31 chr17:53644721-53644801 1.72e-04 10_[+1(1.14e-05)]_62 chr3:48514465-48514545 5.66e-04 [+5(5.48e-05)]_48_[+1(8.11e-05)]_16 chr16:11406645-11406725 6.89e-04 34_[+2(7.46e-05)]_15_[+5(7.38e-05)]_\ 15 chr1:27998785-27998865 4.46e-02 23_[+2(3.82e-05)]_33_[+2(3.82e-05)]_\ 8 chr3:171897691-171897771 1.84e-02 16_[+2(1.95e-05)]_56 chr20:62205539-62205619 4.40e-02 80 chr5:81763151-81763231 1.00e-03 8_[+2(3.82e-05)]_35_[+1(3.49e-05)]_\ 21 chr7:36444528-36444608 1.10e-01 80 chr1:154580644-154580724 4.74e-06 26_[+2(1.95e-05)]_10_[+5(1.86e-05)]_\ 28 chr1:150534652-150534732 2.84e-02 33_[+5(3.59e-05)]_39 chr10:3871185-3871265 6.84e-04 51_[+1(3.49e-05)]_21 chr9:37587658-37587738 5.71e-02 6_[+3(5.75e-05)]_66 chr11:313969-314049 1.17e-02 66_[+1(3.49e-05)]_6 chr6:10838819-10838899 3.02e-03 55_[+5(1.86e-05)]_1_[+4(5.55e-05)]_\ 8 chr12:113416258-11341633 1.76e-03 40_[+4(6.99e-05)]_19_[+2(7.46e-05)]_\ 5 chr18:23570630-23570710 2.39e-03 21_[+3(2.87e-05)]_33_[+3(1.49e-05)]_\ 10 chr19:10196906-10196986 4.92e-03 9_[+4(4.08e-05)]_28_[+1(7.07e-05)]_\ 17_[+4(4.08e-05)]_2 chr16:11391482-11391562 2.46e-02 80 chr13:50069997-50070077 2.93e-03 18_[+5(5.48e-05)]_40_[+1(2.26e-05)]_\ 6 chr2:74433422-74433502 3.51e-02 80 chr14:24630349-24630429 4.27e-02 80 chr19:47760176-47760256 3.52e-02 7_[+4(5.55e-05)]_65 chr6:100706003-100706083 5.50e-03 40_[+4(8.49e-05)]_12_[+1(2.26e-05)]_\ 12 chr6:138043961-138044041 3.51e-03 80 chr3:177332862-177332942 1.34e-02 80 chr17:6659297-6659377 3.18e-05 36_[+2(7.46e-05)]_19_[+1(2.26e-05)]_\ 9 chr11:320889-320969 3.55e-03 13_[+2(9.47e-05)]_59 chr2:146481669-146481749 8.83e-03 20_[+3(2.87e-05)]_52 chr6:42013473-42013553 3.48e-04 72_[+5(5.48e-05)] chr8:145060564-145060644 2.32e-03 66_[+1(3.49e-05)]_6 chr3:172230360-172230440 1.96e-02 80 chr19:17516522-17516602 1.31e-04 31_[+2(7.46e-05)]_6_[+3(5.75e-05)]_\ 27 chr22:50978131-50978211 6.87e-02 80 chr5:131826554-131826634 5.41e-01 80 chr22:18632796-18632876 7.41e-05 51_[+1(2.26e-05)]_3_[+4(5.55e-05)]_\ 10 chr6:36315556-36315636 2.31e-02 80 chr21:35029606-35029686 1.08e-01 34_[+2(3.82e-05)]_38 chr3:5539328-5539408 4.22e-05 48_[+1(1.14e-05)]_12_[+4(1.31e-05)]_\ 4 chr15:101137152-10113723 9.81e-03 43_[+3(8.59e-05)]_29 chr1:41311015-41311095 2.17e-02 80 chr5:119848599-119848679 2.28e-03 33_[+4(2.67e-05)]_39 chr3:36949629-36949709 2.17e-02 80 chr2:202084928-202085008 3.82e-03 80 chr2:99177002-99177082 1.87e-02 5_[+5(5.48e-05)]_67 chr10:114851866-11485194 6.72e-02 80 chr19:47217828-47217908 3.40e-04 24_[+1(1.14e-05)]_14_[+1(5.89e-05)]_\ 26 chr2:152146429-152146509 4.94e-02 80 chr1:110453367-110453447 6.39e-02 80 chr21:42798032-42798112 1.23e-02 20_[+2(1.95e-05)]_37_[+2(3.82e-05)]_\ 7 chr7:134832716-134832796 9.04e-02 50_[+1(2.26e-05)]_22 chr6:32821553-32821633 1.49e-01 48_[+1(7.07e-05)]_24 chr9:100881469-100881549 8.82e-04 34_[+4(5.55e-05)]_11_[+1(4.70e-05)]_\ 10_[+4(5.55e-05)]_1 chr17:78237325-78237405 1.03e-03 48_[+1(1.14e-05)]_24 chr2:7005881-7005961 5.96e-02 17_[+1(2.26e-05)]_26_[+1(2.26e-05)]_\ 21 chr2:240202065-240202145 3.46e-01 80 chr15:57029742-57029822 1.12e-03 8_[+5(1.86e-05)]_40_[+5(9.20e-05)]_\ 16 chr11:64764490-64764570 1.20e-01 17_[+2(7.46e-05)]_55 chrX:40869521-40869601 1.88e-03 80 chr7:4660190-4660270 5.74e-02 49_[+3(8.59e-05)]_23 chr9:90289647-90289727 2.04e-01 80 chr13:111527213-11152729 4.02e-02 20_[+3(5.75e-05)]_52 chr16:89988247-89988327 2.96e-01 80 chr12:127568025-12756810 3.08e-01 80 chr8:26150630-26150710 2.89e-02 80 chr16:17922051-17922131 1.10e-02 11_[+1(1.14e-05)]_53_[+1(1.14e-05)] chr1:54842905-54842985 1.63e-03 2_[+1(3.49e-05)]_16_[+5(5.48e-05)]_\ 46 chr6:82462968-82463048 2.26e-02 80 chr14:97284357-97284437 6.99e-03 9_[+2(1.95e-05)]_63 chr10:104541114-10454119 1.16e-04 17_[+4(1.31e-05)]_26_[+1(3.49e-05)]_\ 21 chr19:51727741-51727821 5.45e-02 21_[+1(9.20e-05)]_51 chrX:48794423-48794503 6.97e-02 21_[+5(9.20e-05)]_51 chr3:146262418-146262498 6.47e-02 12_[+2(1.95e-05)]_25_[+2(9.47e-05)]_\ 27 chr4:73419413-73419493 1.12e-02 13_[+3(8.59e-05)]_59 chr15:58400449-58400529 3.39e-01 80 chr7:100145707-100145787 4.93e-02 49_[+3(5.75e-05)]_23 chr7:8805170-8805250 1.63e-01 38_[+2(7.46e-05)]_34 chr5:81581242-81581322 4.24e-01 80 chrX:41190893-41190973 2.99e-02 60_[+1(2.26e-05)]_12 chr19:4841103-4841183 3.30e-02 80 chr12:6445445-6445525 6.32e-04 26_[+3(5.75e-05)]_46 chr10:88535098-88535178 4.49e-02 51_[+2(7.46e-05)]_21 chr1:159047064-159047144 1.62e-03 19_[+4(2.67e-05)]_24_[+3(1.49e-05)]_\ 21 chr6:34923316-34923396 5.44e-02 7_[+2(1.95e-05)]_65 chr2:86811359-86811439 1.55e-01 9_[+2(9.47e-05)]_63 chr7:74064522-74064602 8.15e-01 80 chr22:46589828-46589908 1.47e-03 62_[+4(8.49e-05)]_[+5(3.59e-05)]_2 chr2:152118323-152118403 2.65e-02 10_[+2(1.95e-05)]_62 chr20:388926-389006 1.65e-04 72_[+4(1.31e-05)] chr5:39077207-39077287 2.56e-02 32_[+2(1.95e-05)]_10_[+2(3.82e-05)]_\ 22 chr1:11851024-11851104 2.12e-03 26_[+3(1.49e-05)]_46 chr8:10488048-10488128 1.93e-03 80 chr15:52024165-52024245 2.38e-02 23_[+2(7.46e-05)]_49 chr7:105924496-105924576 7.17e-03 37_[+2(3.82e-05)]_35 chr1:113480977-113481057 1.24e-03 45_[+2(1.95e-05)]_27 chr2:216696249-216696329 4.19e-02 62_[+1(4.70e-05)]_10 chr16:3313869-3313949 4.72e-02 80 chr16:31033978-31034058 1.29e-03 15_[+3(8.59e-05)]_57 chr5:142965732-142965812 2.52e-01 54_[+3(8.59e-05)]_18 chr1:158979597-158979677 5.61e-05 46_[+1(2.26e-05)]_15_[+4(1.31e-05)]_\ 3 chr8:103818662-103818742 2.97e-01 80 chr13:67914564-67914644 2.43e-01 80 chr8:124049957-124050037 3.71e-02 15_[+1(3.49e-05)]_57 chr2:231200790-231200870 4.47e-03 17_[+3(5.75e-05)]_55 chr18:46599000-46599080 3.56e-01 80 chr8:20060054-20060134 1.08e-02 35_[+3(2.87e-05)]_37 chr19:50880951-50881031 1.94e-02 33_[+3(2.87e-05)]_39 chr17:80408772-80408852 5.06e-02 21_[+4(4.08e-05)]_51 chr6:15097482-15097562 2.50e-01 20_[+3(8.59e-05)]_52 chr5:10627899-10627979 2.18e-01 80 chr1:44514065-44514145 1.61e-01 80 chr16:19707833-19707913 5.62e-03 23_[+3(8.59e-05)]_49 chr14:100841776-10084185 2.40e-01 80 chr6:32806537-32806617 9.02e-03 80 chr9:101837852-101837932 1.26e-01 43_[+3(8.59e-05)]_29 chr10:97068549-97068629 3.99e-02 22_[+2(9.47e-05)]_50 chr9:14522745-14522825 2.58e-01 80 chr9:71584599-71584679 4.16e-03 30_[+3(5.75e-05)]_42 chr7:2445760-2445840 2.78e-01 80 chr5:43040463-43040543 2.78e-02 16_[+3(5.75e-05)]_56 chr1:948708-948788 4.72e-04 63_[+1(4.70e-05)]_9 chr17:76254796-76254876 2.72e-01 80 chr1:173640230-173640310 2.04e-03 14_[+5(1.86e-05)]_35_[+2(9.47e-05)]_\ 15 chr1:155163172-155163252 5.33e-03 13_[+5(9.20e-05)]_8_[+3(1.49e-05)]_\ 43 chr19:48018761-48018841 1.63e-02 51_[+1(9.20e-05)]_21 chr1:1710374-1710454 5.71e-02 46_[+1(4.70e-05)]_26 chr5:131831520-131831600 1.02e-02 80 chr21:45275157-45275237 3.15e-03 80 chr2:201990458-201990538 3.82e-01 80 chr2:113836236-113836316 6.54e-02 33_[+2(1.95e-05)]_39 chr1:8812714-8812794 6.81e-03 71_[+1(8.11e-05)]_1 chr2:178107346-178107426 1.44e-01 80 chr20:48393033-48393113 3.43e-01 80 chr12:32174012-32174092 1.11e-02 70_[+3(5.75e-05)]_2 chr6:43597842-43597922 7.87e-03 29_[+4(5.55e-05)]_43 chr22:36635601-36635681 3.35e-03 23_[+1(5.89e-05)]_49 chr15:43398335-43398415 2.28e-03 33_[+3(1.49e-05)]_39 chr3:28390107-28390187 2.34e-02 80 chr6:30457089-30457169 1.54e-01 80 chr15:45020984-45021064 3.97e-06 23_[+5(1.86e-05)]_49 chr4:185395905-185395985 2.16e-04 46_[+2(3.82e-05)]_26 chr12:133179222-13317930 1.56e-03 5_[+3(5.75e-05)]_67 chr14:58711914-58711994 5.46e-02 40_[+1(4.70e-05)]_32 chr2:191878979-191879059 7.21e-01 80 chr3:52115028-52115108 1.71e-01 66_[+3(8.59e-05)]_6 chr17:39667336-39667416 2.51e-02 57_[+1(3.49e-05)]_15 chr19:50433356-50433436 1.34e-02 21_[+4(8.49e-05)]_39_[+4(2.67e-05)]_\ 4 chr9:108641622-108641702 5.86e-04 36_[+5(3.59e-05)]_17_[+3(8.59e-05)]_\ 11 chr9:90407912-90407992 4.29e-02 61_[+2(5.68e-05)]_11 chr12:56754183-56754263 1.54e-02 68_[+1(4.70e-05)]_4 chr19:893274-893354 2.48e-01 80 chr11:34331019-34331099 2.98e-02 34_[+1(2.26e-05)]_38 chr10:111827935-11182801 1.22e-01 80 chr8:99394938-99395018 2.64e-01 80 chr3:197439318-197439398 2.20e-03 70_[+1(1.14e-05)]_2 chr8:8864272-8864352 4.79e-03 9_[+1(9.20e-05)]_63 chr17:33571503-33571583 1.05e-02 4_[+4(4.08e-05)]_68 chr6:169852259-169852339 1.05e-01 28_[+2(1.95e-05)]_44 chr3:128268244-128268324 7.81e-03 63_[+3(2.87e-05)]_9 chr4:130017401-130017481 2.48e-02 80 chr2:43195233-43195313 9.90e-04 27_[+3(8.59e-05)]_45 chr8:144629505-144629585 7.85e-03 39_[+3(2.87e-05)]_2_[+4(8.49e-05)]_\ 3_[+3(8.59e-05)]_12 chr7:138794085-138794165 1.17e-01 80 chr10:130397883-13039796 1.98e-03 49_[+3(5.75e-05)]_23 chr21:40159658-40159738 2.32e-02 80 chr6:31895441-31895521 1.81e-01 80 chr14:91580917-91580997 9.81e-03 57_[+1(3.49e-05)]_15 chr3:172310126-172310206 1.27e-03 44_[+4(8.49e-05)]_28 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************