******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SRSF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:57091700-57091780 1.0000 80 chr3:149687938-149688018 1.0000 80 chr19:3057499-3057579 1.0000 80 chr1:160370185-160370265 1.0000 80 chr5:138088900-138088980 1.0000 80 chr5:21459539-21459619 1.0000 80 chr12:104531981-10453206 1.0000 80 chr3:119813384-119813464 1.0000 80 chr13:92379788-92379868 1.0000 80 chr16:89788733-89788813 1.0000 80 chr17:7145743-7145823 1.0000 80 chr9:126031137-126031217 1.0000 80 chr9:103361122-103361202 1.0000 80 chrX:149108653-149108733 1.0000 80 chr18:9122604-9122684 1.0000 80 chr5:56111256-56111336 1.0000 80 chr19:9517694-9517774 1.0000 80 chr3:44754143-44754223 1.0000 80 chr6:12009223-12009303 1.0000 80 chr1:144929082-144929162 1.0000 80 chr1:76262843-76262923 1.0000 80 chr6:58287739-58287819 1.0000 80 chr19:58666497-58666577 1.0000 80 chr19:58125609-58125689 1.0000 80 chr10:97416505-97416585 1.0000 80 chr7:4784781-4784861 1.0000 80 chr1:45251965-45252045 1.0000 80 chr11:72533262-72533342 1.0000 80 chr7:140373340-140373420 1.0000 80 chr14:95623793-95623873 1.0000 80 chr11:506479-506559 1.0000 80 chr17:56405238-56405318 1.0000 80 chr5:107718112-107718192 1.0000 80 chr20:32320027-32320107 1.0000 80 chr8:21777030-21777110 1.0000 80 chr8:82754683-82754763 1.0000 80 chr17:41399921-41400001 1.0000 80 chr17:74732950-74733030 1.0000 80 chr21:30432911-30432991 1.0000 80 chr13:91045783-91045863 1.0000 80 chr15:79603501-79603581 1.0000 80 chr12:31478162-31478242 1.0000 80 chr11:61447787-61447867 1.0000 80 chr14:88237679-88237759 1.0000 80 chr1:247171310-247171390 1.0000 80 chr2:191878958-191879038 1.0000 80 chr8:41909524-41909604 1.0000 80 chr11:65625090-65625170 1.0000 80 chr17:79988787-79988867 1.0000 80 chr8:146176230-146176310 1.0000 80 chr9:139564734-139564814 1.0000 80 chr2:149402906-149402986 1.0000 80 chr6:41863152-41863232 1.0000 80 chr22:32146150-32146230 1.0000 80 chr11:64053183-64053263 1.0000 80 chr8:146017398-146017478 1.0000 80 chr5:179050217-179050297 1.0000 80 chr1:186331780-186331860 1.0000 80 chr19:2841428-2841508 1.0000 80 chr16:69599751-69599831 1.0000 80 chr1:204380653-204380733 1.0000 80 chr2:196521867-196521947 1.0000 80 chr4:10463070-10463150 1.0000 80 chr6:17706676-17706756 1.0000 80 chr19:58193329-58193409 1.0000 80 chr22:20073518-20073598 1.0000 80 chr22:19950233-19950313 1.0000 80 chr1:1509747-1509827 1.0000 80 chr19:57901216-57901296 1.0000 80 chr6:119558578-119558658 1.0000 80 chr1:24980832-24980912 1.0000 80 chr19:52901018-52901098 1.0000 80 chrX:49056670-49056750 1.0000 80 chrX:41782672-41782752 1.0000 80 chr19:58740215-58740295 1.0000 80 chr11:77532169-77532249 1.0000 80 chr1:185155305-185155385 1.0000 80 chr22:38902370-38902450 1.0000 80 chr6:30655322-30655402 1.0000 80 chr5:137799837-137799917 1.0000 80 chr22:38902573-38902653 1.0000 80 chr16:75589968-75590048 1.0000 80 chr1:116915861-116915941 1.0000 80 chr17:62223710-62223790 1.0000 80 chr1:85039973-85040053 1.0000 80 chr2:198380651-198380731 1.0000 80 chr16:3481951-3482031 1.0000 80 chr17:27053592-27053672 1.0000 80 chr4:165878036-165878116 1.0000 80 chr1:44457241-44457321 1.0000 80 chr8:146012421-146012501 1.0000 80 chr3:20081530-20081610 1.0000 80 chr5:150460436-150460516 1.0000 80 chr4:166248487-166248567 1.0000 80 chr1:117113349-117113429 1.0000 80 chr17:37356748-37356828 1.0000 80 chr17:62501651-62501731 1.0000 80 chr18:712485-712565 1.0000 80 chr18:39535077-39535157 1.0000 80 chr19:57874701-57874781 1.0000 80 chr1:155896263-155896343 1.0000 80 chr19:58920232-58920312 1.0000 80 chr17:79980467-79980547 1.0000 80 chr1:2160966-2161046 1.0000 80 chr1:162531564-162531644 1.0000 80 chr19:46272714-46272794 1.0000 80 chr5:81147789-81147869 1.0000 80 chr7:35840726-35840806 1.0000 80 chr1:186306860-186306940 1.0000 80 chr12:48152987-48153067 1.0000 80 chr20:34329971-34330051 1.0000 80 chr17:4607321-4607401 1.0000 80 chr1:53309086-53309166 1.0000 80 chr14:23527172-23527252 1.0000 80 chr9:130829572-130829652 1.0000 80 chr1:33283563-33283643 1.0000 80 chr13:91521515-91521595 1.0000 80 chr5:127418913-127418993 1.0000 80 chr18:22006543-22006623 1.0000 80 chr12:7053580-7053660 1.0000 80 chr19:52511448-52511528 1.0000 80 chr19:49653400-49653480 1.0000 80 chr4:106394941-106395021 1.0000 80 chr5:81047233-81047313 1.0000 80 chr12:110719752-11071983 1.0000 80 chr3:44690262-44690342 1.0000 80 chr2:42396665-42396745 1.0000 80 chr9:131085128-131085208 1.0000 80 chr19:58987781-58987861 1.0000 80 chr13:92321824-92321904 1.0000 80 chr15:25018324-25018404 1.0000 80 chr3:8543387-8543467 1.0000 80 chr11:43902287-43902367 1.0000 80 chr8:64081008-64081088 1.0000 80 chr3:44771091-44771171 1.0000 80 chr1:110577375-110577455 1.0000 80 chr19:1653134-1653214 1.0000 80 chr1:2477800-2477880 1.0000 80 chr16:30006907-30006987 1.0000 80 chr6:88182972-88183052 1.0000 80 chr17:40540710-40540790 1.0000 80 chr22:20004498-20004578 1.0000 80 chr1:167691437-167691517 1.0000 80 chr5:137801324-137801404 1.0000 80 chr10:77169095-77169175 1.0000 80 chr5:137801551-137801631 1.0000 80 chr1:1376744-1376824 1.0000 80 chr2:44185669-44185749 1.0000 80 chr5:137090398-137090478 1.0000 80 chr1:16940002-16940082 1.0000 80 chr3:138634690-138634770 1.0000 80 chr8:96281228-96281308 1.0000 80 chr5:137090196-137090276 1.0000 80 chr3:195614705-195614785 1.0000 80 chr1:173991308-173991388 1.0000 80 chr13:93320405-93320485 1.0000 80 chr5:74807117-74807197 1.0000 80 chr18:9093711-9093791 1.0000 80 chr1:43390177-43390257 1.0000 80 chr17:43238723-43238803 1.0000 80 chr16:53737977-53738057 1.0000 80 chr7:126893914-126893994 1.0000 80 chr6:34360455-34360535 1.0000 80 chr12:30908031-30908111 1.0000 80 chr5:43066683-43066763 1.0000 80 chr22:21271814-21271894 1.0000 80 chr2:148601517-148601597 1.0000 80 chr6:26199311-26199391 1.0000 80 chr19:3977860-3977940 1.0000 80 chr20:47663058-47663138 1.0000 80 chr1:50799182-50799262 1.0000 80 chr6:42751220-42751300 1.0000 80 chr19:57751896-57751976 1.0000 80 chr22:39715534-39715614 1.0000 80 chr1:32801783-32801863 1.0000 80 chr1:229762162-229762242 1.0000 80 chr10:1034180-1034260 1.0000 80 chr19:56904840-56904920 1.0000 80 chr9:127623959-127624039 1.0000 80 chr17:56409779-56409859 1.0000 80 chr6:30457398-30457478 1.0000 80 chr19:41859557-41859637 1.0000 80 chr6:3119005-3119085 1.0000 80 chr22:21212703-21212783 1.0000 80 chr2:133015231-133015311 1.0000 80 chr5:31532455-31532535 1.0000 80 chr16:89788952-89789032 1.0000 80 chr19:15490284-15490364 1.0000 80 chr9:139441207-139441287 1.0000 80 chr17:39845171-39845251 1.0000 80 chr1:118497039-118497119 1.0000 80 chr1:35332189-35332269 1.0000 80 chr16:30907906-30907986 1.0000 80 chr11:10830624-10830704 1.0000 80 chr6:41889333-41889413 1.0000 80 chr7:5632452-5632532 1.0000 80 chr17:61524005-61524085 1.0000 80 chr11:30344629-30344709 1.0000 80 chr19:58281005-58281085 1.0000 80 chr10:72647803-72647883 1.0000 80 chr22:19947204-19947284 1.0000 80 chr1:16971069-16971149 1.0000 80 chr12:125399016-12539909 1.0000 80 chr13:91378996-91379076 1.0000 80 chr7:106301389-106301469 1.0000 80 chr1:149859296-149859376 1.0000 80 chr13:93290545-93290625 1.0000 80 chr4:7045679-7045759 1.0000 80 chr22:20783937-20784017 1.0000 80 chr10:52499427-52499507 1.0000 80 chr21:46494259-46494339 1.0000 80 chr9:115095444-115095524 1.0000 80 chr2:171634842-171634922 1.0000 80 chr2:191885036-191885116 1.0000 80 chr2:152684596-152684676 1.0000 80 chr6:31795539-31795619 1.0000 80 chr12:49412387-49412467 1.0000 80 chr18:657777-657857 1.0000 80 chr21:46494056-46494136 1.0000 80 chr17:1945304-1945384 1.0000 80 chr2:19547633-19547713 1.0000 80 chr16:3355534-3355614 1.0000 80 chr7:119400846-119400926 1.0000 80 chr22:21922122-21922202 1.0000 80 chr20:45317931-45318011 1.0000 80 chr19:12893612-12893692 1.0000 80 chr12:112035914-11203599 1.0000 80 chr6:3849525-3849605 1.0000 80 chr7:26240451-26240531 1.0000 80 chr9:139568287-139568367 1.0000 80 chr6:76311745-76311825 1.0000 80 chr4:83350760-83350840 1.0000 80 chr2:70141544-70141624 1.0000 80 chr10:71079097-71079177 1.0000 80 chr12:133614057-13361413 1.0000 80 chr7:135265345-135265425 1.0000 80 chr1:27561023-27561103 1.0000 80 chr17:79825030-79825110 1.0000 80 chr6:34360654-34360734 1.0000 80 chr18:33709399-33709479 1.0000 80 chr15:70391700-70391780 1.0000 80 chr3:196014532-196014612 1.0000 80 chr1:150551651-150551731 1.0000 80 chr19:1269302-1269382 1.0000 80 chr1:162530915-162530995 1.0000 80 chr7:150715424-150715504 1.0000 80 chr1:186305507-186305587 1.0000 80 chr19:10224908-10224988 1.0000 80 chr7:5569172-5569252 1.0000 80 chr16:4897114-4897194 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SRSF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SRSF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.163 C 0.332 G 0.338 T 0.167 Background letter frequencies (from file dataset with add-one prior applied): A 0.163 C 0.332 G 0.337 T 0.167 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAAWCWT MEME-1 width = 8 sites = 21 llr = 206 E-value = 2.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAWCWT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8aa86241 pos.-specific C 2::::5:: probability G ::::1::: matrix T :::23269 bits 2.6 ** 2.4 ** 2.1 ** * 1.8 *** * Relative 1.6 **** ** Entropy 1.3 ***** ** (14.2 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAAAACTT consensus C TTAA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWCWT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:93320405-93320485 17 2.12e-06 TTCATTATGG AAAAATTT TAGGATTCCT chr13:91045783-91045863 17 2.12e-06 gaggaagaag aaaaaatt acttcatttt chr6:41889333-41889413 8 3.16e-06 GGTCAGG AAAAACAT GCGCCCCTGG chr5:31532455-31532535 39 3.16e-06 TGACGGGCGC AAAAACAT GAGTGACTCC chr7:119400846-119400926 24 5.29e-06 ACTTTAGAAG AAAATCTT ATTCCTACAT chr13:93290545-93290625 5 5.29e-06 ACat aaaaaaat aaataaataa chr13:91521515-91521595 67 5.29e-06 AGGATACATA AAAAATAT ATTCCC chr1:118497039-118497119 72 9.59e-06 TTCCCTTTTC AAAATTAT A chr18:9093711-9093791 45 9.59e-06 TTTCAAACTA AAATACTT ACCCTCAttc chr1:186331780-186331860 11 1.39e-05 AAAGAATCTT AAATTCTT TATGTAAACG chr13:92379788-92379868 6 1.39e-05 aaata aaataaat atgggtaaaa chr12:31478162-31478242 4 1.72e-05 GAG CAAAACTT CGGGCTCCGA chr13:91378996-91379076 30 1.94e-05 tttccagctg caaaaatt gattggctga chr2:171634842-171634922 66 2.04e-05 TCTTCTATTC AAATTCAT ACTGTTT chr1:43390177-43390257 23 3.23e-05 ACCTTGGCCC CAAATCTT CTACCCCGGG chr1:185155305-185155385 27 3.23e-05 TCATTATATG AAAAGCTT ATGCAGATTG chr18:9122604-9122684 67 3.23e-05 GCCATTCAGA AAAAGCTT GGTAGG chr1:24980832-24980912 31 3.67e-05 GAACTTAACA CAAATTTT GCCGCAGAAT chr2:44185669-44185749 20 3.97e-05 ATAGTGTTTG AAAATCTA AAAGTCACTT chr20:34329971-34330051 67 3.97e-05 GAGAGAATCT AAAAAAAA CAATGG chr21:30432911-30432991 3 5.38e-05 CC CAATATTT TCCCAGGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWCWT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:93320405-93320485 2.1e-06 16_[+1]_56 chr13:91045783-91045863 2.1e-06 16_[+1]_56 chr6:41889333-41889413 3.2e-06 7_[+1]_65 chr5:31532455-31532535 3.2e-06 38_[+1]_34 chr7:119400846-119400926 5.3e-06 23_[+1]_49 chr13:93290545-93290625 5.3e-06 4_[+1]_68 chr13:91521515-91521595 5.3e-06 66_[+1]_6 chr1:118497039-118497119 9.6e-06 71_[+1]_1 chr18:9093711-9093791 9.6e-06 44_[+1]_28 chr1:186331780-186331860 1.4e-05 10_[+1]_62 chr13:92379788-92379868 1.4e-05 5_[+1]_67 chr12:31478162-31478242 1.7e-05 3_[+1]_69 chr13:91378996-91379076 1.9e-05 29_[+1]_43 chr2:171634842-171634922 2e-05 65_[+1]_7 chr1:43390177-43390257 3.2e-05 22_[+1]_50 chr1:185155305-185155385 3.2e-05 26_[+1]_46 chr18:9122604-9122684 3.2e-05 66_[+1]_6 chr1:24980832-24980912 3.7e-05 30_[+1]_42 chr2:44185669-44185749 4e-05 19_[+1]_53 chr20:34329971-34330051 4e-05 66_[+1]_6 chr21:30432911-30432991 5.4e-05 2_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWCWT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAWCWT width=8 seqs=21 chr13:93320405-93320485 ( 17) AAAAATTT 1 chr13:91045783-91045863 ( 17) AAAAAATT 1 chr6:41889333-41889413 ( 8) AAAAACAT 1 chr5:31532455-31532535 ( 39) AAAAACAT 1 chr7:119400846-119400926 ( 24) AAAATCTT 1 chr13:93290545-93290625 ( 5) AAAAAAAT 1 chr13:91521515-91521595 ( 67) AAAAATAT 1 chr1:118497039-118497119 ( 72) AAAATTAT 1 chr18:9093711-9093791 ( 45) AAATACTT 1 chr1:186331780-186331860 ( 11) AAATTCTT 1 chr13:92379788-92379868 ( 6) AAATAAAT 1 chr12:31478162-31478242 ( 4) CAAAACTT 1 chr13:91378996-91379076 ( 30) CAAAAATT 1 chr2:171634842-171634922 ( 66) AAATTCAT 1 chr1:43390177-43390257 ( 23) CAAATCTT 1 chr1:185155305-185155385 ( 27) AAAAGCTT 1 chr18:9122604-9122684 ( 67) AAAAGCTT 1 chr1:24980832-24980912 ( 31) CAAATTTT 1 chr2:44185669-44185749 ( 20) AAAATCTA 1 chr20:34329971-34330051 ( 67) AAAAAAAA 1 chr21:30432911-30432991 ( 3) CAATATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWCWT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 2.0e-006 222 -48 -1104 -1104 261 -1104 -1104 -1104 261 -1104 -1104 -1104 222 -1104 -1104 51 181 -1104 -182 99 54 66 -1104 51 122 -1104 -1104 189 -78 -1104 -1104 243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWCWT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.0e-006 0.761905 0.238095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.761905 0.000000 0.000000 0.238095 0.571429 0.000000 0.095238 0.333333 0.238095 0.523810 0.000000 0.238095 0.380952 0.000000 0.000000 0.619048 0.095238 0.000000 0.000000 0.904762 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWCWT MEME-1 regular expression -------------------------------------------------------------------------------- [AC]AA[AT][AT][CAT][TA]T -------------------------------------------------------------------------------- Time 5.09 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTTWTTT MEME-2 width = 8 sites = 16 llr = 170 E-value = 3.7e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTTWTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:2:6::3 pos.-specific C 1::::::: probability G :1:::2:: matrix T 598a48a8 bits 2.6 * * 2.4 * * 2.1 * * 1.8 *** ** Relative 1.6 ******* Entropy 1.3 ******** (15.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTTTATTT consensus A T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTWTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:186305507-186305587 37 5.90e-07 AGTAGATACC TTTTATTT CTATTCCATT chr15:70391700-70391780 63 1.17e-06 TCCCCTCTTC ATTTATTT ATTCTCCTAA chr1:185155305-185155385 61 1.77e-06 CTCATCTATC TTTTTTTT AAATATCTGA chr6:119558578-119558658 9 2.36e-06 TCTCCTAC ATTTTTTT CAGCCCCACT chr18:9093711-9093791 9 3.50e-06 GGAAGTTC ATTTATTA AGAGAAATTA chr19:1653134-1653214 16 5.24e-06 TTCTGCTTGG TTATATTT GCGTTCCTCG chr13:91521515-91521595 28 5.24e-06 ATGCAACTGC TTATATTT CTATCCAGAA chr1:186306860-186306940 21 5.24e-06 ATTAGTCATC ATTTTTTA ATATACACAA chr1:186331780-186331860 39 5.24e-06 CAATTGGTTG ATTTTTTA CGCCAAATGT chr13:93320405-93320485 1 5.81e-06 . ATATATTT CATTATGGAA chr13:91378996-91379076 57 8.17e-06 atattttcta ttttagtt ctctctagat chr12:49412387-49412467 14 1.05e-05 ACCCGGCTGC TTTTTGTT TGCTAGACAC chr1:144929082-144929162 15 1.40e-05 TTGTTTTGGC TGTTATTT TCTCAGTCTT chr1:118497039-118497119 42 2.11e-05 ACACTCTGTC AGTTTTTT AGGGTCTCTT chr16:30006907-30006987 50 2.11e-05 CGGCTCCCGC CTTTTTTT CTTCTCGGCC chr7:135265345-135265425 42 2.23e-05 agtttttgta ttttagta gagacagggt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTWTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:186305507-186305587 5.9e-07 36_[+2]_36 chr15:70391700-70391780 1.2e-06 62_[+2]_10 chr1:185155305-185155385 1.8e-06 60_[+2]_12 chr6:119558578-119558658 2.4e-06 8_[+2]_64 chr18:9093711-9093791 3.5e-06 8_[+2]_64 chr19:1653134-1653214 5.2e-06 15_[+2]_57 chr13:91521515-91521595 5.2e-06 27_[+2]_45 chr1:186306860-186306940 5.2e-06 20_[+2]_52 chr1:186331780-186331860 5.2e-06 38_[+2]_34 chr13:93320405-93320485 5.8e-06 [+2]_72 chr13:91378996-91379076 8.2e-06 56_[+2]_16 chr12:49412387-49412467 1.1e-05 13_[+2]_59 chr1:144929082-144929162 1.4e-05 14_[+2]_58 chr1:118497039-118497119 2.1e-05 41_[+2]_31 chr16:30006907-30006987 2.1e-05 49_[+2]_23 chr7:135265345-135265425 2.2e-05 41_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTWTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTTWTTT width=8 seqs=16 chr1:186305507-186305587 ( 37) TTTTATTT 1 chr15:70391700-70391780 ( 63) ATTTATTT 1 chr1:185155305-185155385 ( 61) TTTTTTTT 1 chr6:119558578-119558658 ( 9) ATTTTTTT 1 chr18:9093711-9093791 ( 9) ATTTATTA 1 chr19:1653134-1653214 ( 16) TTATATTT 1 chr13:91521515-91521595 ( 28) TTATATTT 1 chr1:186306860-186306940 ( 21) ATTTTTTA 1 chr1:186331780-186331860 ( 39) ATTTTTTA 1 chr13:93320405-93320485 ( 1) ATATATTT 1 chr13:91378996-91379076 ( 57) TTTTAGTT 1 chr12:49412387-49412467 ( 14) TTTTTGTT 1 chr1:144929082-144929162 ( 15) TGTTATTT 1 chr1:118497039-118497119 ( 42) AGTTTTTT 1 chr16:30006907-30006987 ( 50) CTTTTTTT 1 chr7:135265345-135265425 ( 42) TTTTAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTWTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 3.7e-006 142 -240 -1064 158 -1064 -1064 -143 239 20 -1064 -1064 228 -1064 -1064 -1064 258 178 -1064 -1064 139 -1064 -1064 -85 228 -1064 -1064 -1064 258 61 -1064 -1064 216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTWTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.7e-006 0.437500 0.062500 0.000000 0.500000 0.000000 0.000000 0.125000 0.875000 0.187500 0.000000 0.000000 0.812500 0.000000 0.000000 0.000000 1.000000 0.562500 0.000000 0.000000 0.437500 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTWTTT MEME-2 regular expression -------------------------------------------------------------------------------- [TA]TTT[AT]TT[TA] -------------------------------------------------------------------------------- Time 8.90 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAAATTA MEME-3 width = 8 sites = 11 llr = 116 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAATTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:aa6:1a pos.-specific C :2::31:: probability G :5::1:2: matrix T :3:::97: bits 2.6 * ** * 2.4 * ** * 2.1 * ** * * 1.8 * ** * * Relative 1.6 * ** * * Entropy 1.3 * ** *** (15.2 bits) 1.0 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGAAATTA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAATTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:119400846-119400926 40 1.62e-06 TTATTCCTAC ATAAATTA TTCTAATTCT chr18:9093711-9093791 19 1.62e-06 ATTTATTAAG AGAAATTA CTCCTTGGTT chr2:171634842-171634922 26 2.68e-06 GGGATTACTG ACAAATTA GTAGGTACTA chr13:91045783-91045863 58 2.68e-06 aaccctgatt acaaatta gacaaggaaa chr13:92321824-92321904 46 5.98e-06 ATGGCAGGGT AGAACTTA GGAAAGAGGT chr1:24980832-24980912 20 5.98e-06 TAATTGCAAC AGAACTTA ACACAAATTT chr13:93290545-93290625 15 7.56e-06 aaaaaaataa ataaataa aatGAGGCAG chr13:92379788-92379868 23 1.08e-05 tatgggtaaa ataaatga aATGGATGCA chr3:44754143-44754223 9 1.63e-05 CCGGTTTC AGAAGTTA AGGCTGGTGT chr1:118497039-118497119 4 1.95e-05 TAT AGAAACTA ACAGGTTTGA chr15:70391700-70391780 4 3.48e-05 CTC AGAACTGA ACCTCCCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAATTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:119400846-119400926 1.6e-06 39_[+3]_33 chr18:9093711-9093791 1.6e-06 18_[+3]_54 chr2:171634842-171634922 2.7e-06 25_[+3]_47 chr13:91045783-91045863 2.7e-06 57_[+3]_15 chr13:92321824-92321904 6e-06 45_[+3]_27 chr1:24980832-24980912 6e-06 19_[+3]_53 chr13:93290545-93290625 7.6e-06 14_[+3]_58 chr13:92379788-92379868 1.1e-05 22_[+3]_50 chr3:44754143-44754223 1.6e-05 8_[+3]_64 chr1:118497039-118497119 2e-05 3_[+3]_69 chr15:70391700-70391780 3.5e-05 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAATTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAATTA width=8 seqs=11 chr7:119400846-119400926 ( 40) ATAAATTA 1 chr18:9093711-9093791 ( 19) AGAAATTA 1 chr2:171634842-171634922 ( 26) ACAAATTA 1 chr13:91045783-91045863 ( 58) ACAAATTA 1 chr13:92321824-92321904 ( 46) AGAACTTA 1 chr1:24980832-24980912 ( 20) AGAACTTA 1 chr13:93290545-93290625 ( 15) ATAAATAA 1 chr13:92379788-92379868 ( 23) ATAAATGA 1 chr3:44754143-44754223 ( 9) AGAAGTTA 1 chr1:118497039-118497119 ( 4) AGAAACTA 1 chr15:70391700-70391780 ( 4) AGAACTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAATTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 1.2e+001 261 -1010 -1010 -1010 -1010 -87 69 70 261 -1010 -1010 -1010 261 -1010 -1010 -1010 196 -28 -189 -1010 -1010 -186 -1010 244 -85 -1010 -89 212 261 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAATTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.2e+001 1.000000 0.000000 0.000000 0.000000 0.000000 0.181818 0.545455 0.272727 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.272727 0.090909 0.000000 0.000000 0.090909 0.000000 0.909091 0.090909 0.000000 0.181818 0.727273 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAATTA MEME-3 regular expression -------------------------------------------------------------------------------- A[GT]AA[AC]TTA -------------------------------------------------------------------------------- Time 12.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAABAGC MEME-4 width = 8 sites = 19 llr = 176 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAABAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:aa2a:: pos.-specific C ::::4::a probability G 7a::3:a: matrix T 1:::2::: bits 2.6 ** * 2.4 ** * 2.1 ** * 1.8 ** * Relative 1.6 *** *** Entropy 1.3 *** *** (13.3 bits) 1.0 *** *** 0.8 **** *** 0.5 **** *** 0.3 **** *** 0.0 -------- Multilevel GGAACAGC consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAABAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:16971069-16971149 23 9.19e-06 GACCGCGAAG GGAATAGC CGGAACCCGC chr22:38902370-38902450 13 9.19e-06 ACAGCGCCTC GGAATAGC CCGAGGGCTC chr16:75589968-75590048 61 2.75e-05 GCCAGCAGCA GGAACAGC GCGGCTTTGG chrX:49056670-49056750 49 2.75e-05 cgcgcTCGTT GGAACAGC CCAGGCGGCT chr11:65625090-65625170 44 2.75e-05 CGCGCAGACA GGAACAGC CTTGGGTGGG chr8:41909524-41909604 16 2.75e-05 GCAAGGCGGC GGAACAGC CGCGGGGGGA chr20:32320027-32320107 25 2.75e-05 ctccggggcc ggaacagc cggggagagc chrX:149108653-149108733 45 2.75e-05 AACTGTGGGA GGAACAGC TGGGGCGGAG chr11:57091700-57091780 42 2.75e-05 ACGGGAAGAT GGAACAGC CCCGGGCAAT chr3:196014532-196014612 66 5.50e-05 GGCAGCTGAT GGAAGAGC CAGCCGG chr2:191885036-191885116 67 5.50e-05 GCGAGTGCTC GGAAGAGC CGCCCC chr1:50799182-50799262 36 5.50e-05 TGGGCTTTAG GGAAGAGC TGGGGACGAG chr17:40540710-40540790 56 5.50e-05 CCACAGCGAG GGAAGAGC CGAGGACTTG chr1:160370185-160370265 25 5.50e-05 GGCGACTCCG GGAAGAGC GGGGCCGCAG chr16:53737977-53738057 10 5.94e-05 CTCAGAGGG AGAATAGC TCCAGACGGG chr1:150551651-150551731 61 7.26e-05 GTGGGCGCGA AGAAAAGC AGCCTCGCGG chr1:204380653-204380733 24 7.26e-05 TCGAGCCAGC AGAAAAGC CACAGAGGGC chr5:81147789-81147869 12 7.71e-05 CTGCTCGGGC TGAATAGC ATTTGCTGTT chr9:103361122-103361202 55 9.96e-05 AGGAGCCACA TGAAAAGC GCTAATGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAABAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:16971069-16971149 9.2e-06 22_[+4]_50 chr22:38902370-38902450 9.2e-06 12_[+4]_60 chr16:75589968-75590048 2.7e-05 60_[+4]_12 chrX:49056670-49056750 2.7e-05 48_[+4]_24 chr11:65625090-65625170 2.7e-05 43_[+4]_29 chr8:41909524-41909604 2.7e-05 15_[+4]_57 chr20:32320027-32320107 2.7e-05 24_[+4]_48 chrX:149108653-149108733 2.7e-05 44_[+4]_28 chr11:57091700-57091780 2.7e-05 41_[+4]_31 chr3:196014532-196014612 5.5e-05 65_[+4]_7 chr2:191885036-191885116 5.5e-05 66_[+4]_6 chr1:50799182-50799262 5.5e-05 35_[+4]_37 chr17:40540710-40540790 5.5e-05 55_[+4]_17 chr1:160370185-160370265 5.5e-05 24_[+4]_48 chr16:53737977-53738057 5.9e-05 9_[+4]_63 chr1:150551651-150551731 7.3e-05 60_[+4]_12 chr1:204380653-204380733 7.3e-05 23_[+4]_49 chr5:81147789-81147869 7.7e-05 11_[+4]_61 chr9:103361122-103361202 0.0001 54_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAABAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAABAGC width=8 seqs=19 chr1:16971069-16971149 ( 23) GGAATAGC 1 chr22:38902370-38902450 ( 13) GGAATAGC 1 chr16:75589968-75590048 ( 61) GGAACAGC 1 chrX:49056670-49056750 ( 49) GGAACAGC 1 chr11:65625090-65625170 ( 44) GGAACAGC 1 chr8:41909524-41909604 ( 16) GGAACAGC 1 chr20:32320027-32320107 ( 25) GGAACAGC 1 chrX:149108653-149108733 ( 45) GGAACAGC 1 chr11:57091700-57091780 ( 42) GGAACAGC 1 chr3:196014532-196014612 ( 66) GGAAGAGC 1 chr2:191885036-191885116 ( 67) GGAAGAGC 1 chr1:50799182-50799262 ( 36) GGAAGAGC 1 chr17:40540710-40540790 ( 56) GGAAGAGC 1 chr1:160370185-160370265 ( 25) GGAAGAGC 1 chr16:53737977-53738057 ( 10) AGAATAGC 1 chr1:150551651-150551731 ( 61) AGAAAAGC 1 chr1:204380653-204380733 ( 24) AGAAAAGC 1 chr5:81147789-81147869 ( 12) TGAATAGC 1 chr9:103361122-103361202 ( 55) TGAAAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAABAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 2.5e+001 -5 -1089 113 -67 -1089 -1089 157 -1089 261 -1089 -1089 -1089 261 -1089 -1089 -1089 -5 15 -36 33 261 -1089 -1089 -1089 -1089 -1089 157 -1089 -1089 159 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAABAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.5e+001 0.157895 0.000000 0.736842 0.105263 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.157895 0.368421 0.263158 0.210526 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAABAGC MEME-4 regular expression -------------------------------------------------------------------------------- GGAA[CGT]AGC -------------------------------------------------------------------------------- Time 16.41 secs. ******************************************************************************** ******************************************************************************** MOTIF KCCATTTT MEME-5 width = 8 sites = 14 llr = 137 E-value = 4.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCCATTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::8:3:1 pos.-specific C :6a2:::: probability G 51:::::: matrix T 53::a7a9 bits 2.6 * * 2.4 * * 2.1 * ** 1.8 **** Relative 1.6 ****** Entropy 1.3 ****** (14.1 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCATTTT consensus TT C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCCATTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:91045783-91045863 27 3.51e-06 aaaaaattac ttcatttt gtgagtactt chr6:76311745-76311825 68 8.22e-06 GGCGGGTGCG GCCATTTT ACGGC chr19:58281005-58281085 30 8.22e-06 AGCCGTGGCA GCCATTTT GGCCTGTCAG chr16:30006907-30006987 15 8.22e-06 CTTCTCCCGC GCCATTTT GCTCAACCCG chr17:62501651-62501731 14 8.22e-06 TCTCGACGCT GCCATTTT GAGCTCCTCC chr19:58193329-58193409 43 1.06e-05 CCTCGTGGCG GTCATTTT GGCCTCTGTC chr2:152684596-152684676 67 1.29e-05 TTGAACAGTC TCCATATT CTAGTG chr11:10830624-10830704 37 1.86e-05 AGTGCGCAAA GCCATATT CGCGAAGTCT chr1:144929082-144929162 55 2.09e-05 TACAATATTG GTCATATT TGGTGGCGGG chr1:118497039-118497119 63 2.57e-05 GTCTCTTTTT TCCCTTTT CAAAATTATA chr2:19547633-19547713 1 3.04e-05 . TGCATTTT CTGCCCACAC chr13:93320405-93320485 30 3.04e-05 AATTTTAGGA TTCCTTTT GCTCTCAGTA chr1:186305507-186305587 49 3.27e-05 TTATTTCTAT TCCATTTA GTTTTAGGCC chr17:7145743-7145823 32 5.77e-05 TTGCGCCACT TCCCTATT CACCAACCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCCATTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:91045783-91045863 3.5e-06 26_[+5]_46 chr6:76311745-76311825 8.2e-06 67_[+5]_5 chr19:58281005-58281085 8.2e-06 29_[+5]_43 chr16:30006907-30006987 8.2e-06 14_[+5]_58 chr17:62501651-62501731 8.2e-06 13_[+5]_59 chr19:58193329-58193409 1.1e-05 42_[+5]_30 chr2:152684596-152684676 1.3e-05 66_[+5]_6 chr11:10830624-10830704 1.9e-05 36_[+5]_36 chr1:144929082-144929162 2.1e-05 54_[+5]_18 chr1:118497039-118497119 2.6e-05 62_[+5]_10 chr2:19547633-19547713 3e-05 [+5]_72 chr13:93320405-93320485 3e-05 29_[+5]_43 chr1:186305507-186305587 3.3e-05 48_[+5]_24 chr17:7145743-7145823 5.8e-05 31_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCCATTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCCATTTT width=8 seqs=14 chr13:91045783-91045863 ( 27) TTCATTTT 1 chr6:76311745-76311825 ( 68) GCCATTTT 1 chr19:58281005-58281085 ( 30) GCCATTTT 1 chr16:30006907-30006987 ( 15) GCCATTTT 1 chr17:62501651-62501731 ( 14) GCCATTTT 1 chr19:58193329-58193409 ( 43) GTCATTTT 1 chr2:152684596-152684676 ( 67) TCCATATT 1 chr11:10830624-10830704 ( 37) GCCATATT 1 chr1:144929082-144929162 ( 55) GTCATATT 1 chr1:118497039-118497119 ( 63) TCCCTTTT 1 chr2:19547633-19547713 ( 1) TGCATTTT 1 chr13:93320405-93320485 ( 30) TTCCTTTT 1 chr1:186305507-186305587 ( 49) TCCATTTA 1 chr17:7145743-7145823 ( 32) TCCCTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCCATTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 4.5e+002 -1045 -1045 57 158 -1045 95 -224 77 -1045 159 -1045 -1045 226 -63 -1045 -1045 -1045 -1045 -1045 258 81 -1045 -1045 209 -1045 -1045 -1045 258 -119 -1045 -1045 247 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCCATTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.5e+002 0.000000 0.000000 0.500000 0.500000 0.000000 0.642857 0.071429 0.285714 0.000000 1.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.071429 0.000000 0.000000 0.928571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCCATTTT MEME-5 regular expression -------------------------------------------------------------------------------- [GT][CT]C[AC]T[TA]TT -------------------------------------------------------------------------------- Time 20.11 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:57091700-57091780 1.32e-01 41_[+4(2.75e-05)]_31 chr3:149687938-149688018 9.07e-01 80 chr19:3057499-3057579 7.30e-01 80 chr1:160370185-160370265 1.64e-01 24_[+4(5.50e-05)]_48 chr5:138088900-138088980 2.20e-01 80 chr5:21459539-21459619 3.70e-01 80 chr12:104531981-10453206 9.93e-01 80 chr3:119813384-119813464 7.04e-01 80 chr13:92379788-92379868 1.75e-05 5_[+1(1.39e-05)]_9_[+3(1.08e-05)]_\ 36_[+1(5.49e-05)]_6 chr16:89788733-89788813 2.80e-02 80 chr17:7145743-7145823 7.05e-02 31_[+5(5.77e-05)]_41 chr9:126031137-126031217 9.98e-01 80 chr9:103361122-103361202 5.09e-03 54_[+4(9.96e-05)]_18 chrX:149108653-149108733 1.54e-01 44_[+4(2.75e-05)]_28 chr18:9122604-9122684 2.59e-03 66_[+1(3.23e-05)]_6 chr5:56111256-56111336 9.88e-01 80 chr19:9517694-9517774 5.16e-01 80 chr3:44754143-44754223 3.43e-02 8_[+3(1.63e-05)]_64 chr6:12009223-12009303 8.44e-01 80 chr1:144929082-144929162 1.37e-04 14_[+2(1.40e-05)]_32_[+5(2.09e-05)]_\ 18 chr1:76262843-76262923 3.88e-01 80 chr6:58287739-58287819 9.37e-01 80 chr19:58666497-58666577 6.42e-01 80 chr19:58125609-58125689 2.40e-01 80 chr10:97416505-97416585 7.01e-01 80 chr7:4784781-4784861 5.03e-01 80 chr1:45251965-45252045 9.66e-01 80 chr11:72533262-72533342 9.98e-01 80 chr7:140373340-140373420 9.61e-01 80 chr14:95623793-95623873 9.71e-01 80 chr11:506479-506559 9.95e-01 80 chr17:56405238-56405318 5.01e-01 80 chr5:107718112-107718192 6.24e-01 80 chr20:32320027-32320107 2.38e-01 24_[+4(2.75e-05)]_38_[+4(2.75e-05)]_\ 2 chr8:21777030-21777110 9.59e-01 80 chr8:82754683-82754763 4.74e-01 80 chr17:41399921-41400001 6.02e-01 80 chr17:74732950-74733030 5.67e-01 80 chr21:30432911-30432991 1.33e-04 2_[+1(5.38e-05)]_70 chr13:91045783-91045863 2.36e-09 16_[+1(2.12e-06)]_2_[+5(3.51e-06)]_\ 23_[+3(2.68e-06)]_15 chr15:79603501-79603581 9.92e-01 80 chr12:31478162-31478242 3.63e-02 3_[+1(1.72e-05)]_69 chr11:61447787-61447867 8.26e-01 80 chr14:88237679-88237759 5.72e-01 80 chr1:247171310-247171390 9.53e-01 80 chr2:191878958-191879038 4.09e-01 80 chr8:41909524-41909604 2.44e-01 15_[+4(2.75e-05)]_57 chr11:65625090-65625170 9.76e-02 43_[+4(2.75e-05)]_29 chr17:79988787-79988867 6.77e-01 80 chr8:146176230-146176310 8.70e-01 80 chr9:139564734-139564814 5.48e-01 80 chr2:149402906-149402986 4.23e-02 80 chr6:41863152-41863232 9.92e-01 80 chr22:32146150-32146230 8.28e-01 80 chr11:64053183-64053263 5.29e-01 80 chr8:146017398-146017478 5.58e-01 80 chr5:179050217-179050297 6.44e-01 80 chr1:186331780-186331860 7.49e-06 10_[+1(1.39e-05)]_20_[+2(5.24e-06)]_\ 34 chr19:2841428-2841508 9.93e-01 80 chr16:69599751-69599831 8.99e-01 80 chr1:204380653-204380733 5.95e-02 23_[+4(7.26e-05)]_49 chr2:196521867-196521947 4.20e-01 80 chr4:10463070-10463150 9.08e-01 80 chr6:17706676-17706756 7.71e-01 80 chr19:58193329-58193409 6.41e-03 42_[+5(1.06e-05)]_30 chr22:20073518-20073598 4.88e-01 80 chr22:19950233-19950313 7.74e-01 80 chr1:1509747-1509827 9.50e-01 80 chr19:57901216-57901296 4.78e-02 80 chr6:119558578-119558658 2.75e-04 8_[+2(2.36e-06)]_64 chr1:24980832-24980912 4.40e-05 19_[+3(5.98e-06)]_3_[+1(3.67e-05)]_\ 42 chr19:52901018-52901098 5.85e-01 80 chrX:49056670-49056750 2.03e-01 48_[+4(2.75e-05)]_24 chrX:41782672-41782752 9.93e-01 80 chr19:58740215-58740295 8.74e-02 28_[+2(5.85e-05)]_44 chr11:77532169-77532249 4.06e-01 80 chr1:185155305-185155385 3.46e-07 26_[+1(3.23e-05)]_26_[+2(1.77e-06)]_\ 12 chr22:38902370-38902450 3.35e-03 12_[+4(9.19e-06)]_60 chr6:30655322-30655402 9.75e-01 80 chr5:137799837-137799917 6.44e-01 80 chr22:38902573-38902653 4.00e-02 80 chr16:75589968-75590048 1.75e-01 60_[+4(2.75e-05)]_12 chr1:116915861-116915941 5.67e-01 80 chr17:62223710-62223790 4.29e-01 80 chr1:85039973-85040053 1.00e+00 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************