******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SOX6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:93396474-93396554 1.0000 80 chr10:111841884-11184196 1.0000 80 chr3:20371634-20371714 1.0000 80 chr14:75087466-75087546 1.0000 80 chr1:114201777-114201857 1.0000 80 chr15:75432690-75432770 1.0000 80 chr8:53601113-53601193 1.0000 80 chr10:114220829-11422090 1.0000 80 chr6:74290172-74290252 1.0000 80 chr3:45615749-45615829 1.0000 80 chr18:47250278-47250358 1.0000 80 chr12:77022677-77022757 1.0000 80 chr10:74365000-74365080 1.0000 80 chr1:40714246-40714326 1.0000 80 chr12:112851707-11285178 1.0000 80 chr1:219215353-219215433 1.0000 80 chr20:48317260-48317340 1.0000 80 chr2:45666152-45666232 1.0000 80 chr10:111836825-11183690 1.0000 80 chr1:100107795-100107875 1.0000 80 chr9:112956727-112956807 1.0000 80 chr9:67297631-67297711 1.0000 80 chr15:48883015-48883095 1.0000 80 chr6:130160765-130160845 1.0000 80 chr19:10830341-10830421 1.0000 80 chr3:129539560-129539640 1.0000 80 chr1:109942086-109942166 1.0000 80 chr1:92193503-92193583 1.0000 80 chr5:41883463-41883543 1.0000 80 chr11:59961710-59961790 1.0000 80 chr16:53899533-53899613 1.0000 80 chr5:149957835-149957915 1.0000 80 chr11:47025255-47025335 1.0000 80 chr2:85695988-85696068 1.0000 80 chr15:95790448-95790528 1.0000 80 chr18:9960379-9960459 1.0000 80 chr6:116575346-116575426 1.0000 80 chr2:18739897-18739977 1.0000 80 chr2:238848996-238849076 1.0000 80 chr4:159841836-159841916 1.0000 80 chr7:123138835-123138915 1.0000 80 chr2:61482851-61482931 1.0000 80 chr12:1281023-1281103 1.0000 80 chr5:87547077-87547157 1.0000 80 chr4:124521281-124521361 1.0000 80 chr15:40398741-40398821 1.0000 80 chr6:76339702-76339782 1.0000 80 chr2:24037976-24038056 1.0000 80 chr22:29760264-29760344 1.0000 80 chr11:59315408-59315488 1.0000 80 chr2:62390461-62390541 1.0000 80 chr6:39004994-39005074 1.0000 80 chr6:74132374-74132454 1.0000 80 chr5:71522950-71523030 1.0000 80 chr2:132426562-132426642 1.0000 80 chr2:178545111-178545191 1.0000 80 chr1:1711684-1711764 1.0000 80 chr5:139570241-139570321 1.0000 80 chr2:12992523-12992603 1.0000 80 chr14:103780134-10378021 1.0000 80 chr18:60517897-60517977 1.0000 80 chr6:84797002-84797082 1.0000 80 chr16:20746926-20747006 1.0000 80 chr12:11802097-11802177 1.0000 80 chr4:186240018-186240098 1.0000 80 chr3:186600747-186600827 1.0000 80 chr8:108299868-108299948 1.0000 80 chr15:79229637-79229717 1.0000 80 chr6:90869909-90869989 1.0000 80 chr5:159066078-159066158 1.0000 80 chr11:118586722-11858680 1.0000 80 chr1:54875189-54875269 1.0000 80 chr4:8453332-8453412 1.0000 80 chr6:11393336-11393416 1.0000 80 chr18:44011934-44012014 1.0000 80 chr5:96050690-96050770 1.0000 80 chr10:112243587-11224366 1.0000 80 chr15:58407177-58407257 1.0000 80 chr12:45586313-45586393 1.0000 80 chr1:41616789-41616869 1.0000 80 chr11:16215777-16215857 1.0000 80 chr7:16532429-16532509 1.0000 80 chr11:119997464-11999754 1.0000 80 chr11:12864633-12864713 1.0000 80 chr7:106317101-106317181 1.0000 80 chr10:66627462-66627542 1.0000 80 chr6:135612995-135613075 1.0000 80 chr22:39848838-39848918 1.0000 80 chr10:3878067-3878147 1.0000 80 chr13:60035683-60035763 1.0000 80 chr1:66153650-66153730 1.0000 80 chr6:168091324-168091404 1.0000 80 chr10:32348560-32348640 1.0000 80 chr20:48585539-48585619 1.0000 80 chr2:134890113-134890193 1.0000 80 chr9:99871601-99871681 1.0000 80 chr4:159731084-159731164 1.0000 80 chr11:110188328-11018840 1.0000 80 chr20:51797721-51797801 1.0000 80 chr7:138838753-138838833 1.0000 80 chrX:122937447-122937527 1.0000 80 chr7:18217990-18218070 1.0000 80 chr4:123724982-123725062 1.0000 80 chr1:206845508-206845588 1.0000 80 chr22:29816199-29816279 1.0000 80 chr8:86940397-86940477 1.0000 80 chr11:123992997-12399307 1.0000 80 chr7:129515949-129516029 1.0000 80 chr20:2099610-2099690 1.0000 80 chr3:49256119-49256199 1.0000 80 chr9:99814235-99814315 1.0000 80 chr7:110714943-110715023 1.0000 80 chr9:124049388-124049468 1.0000 80 chr21:36143939-36144019 1.0000 80 chr3:38369300-38369380 1.0000 80 chr12:128801830-12880191 1.0000 80 chr2:15698243-15698323 1.0000 80 chr9:259882-259962 1.0000 80 chr1:167799267-167799347 1.0000 80 chr11:14786832-14786912 1.0000 80 chr2:219226282-219226362 1.0000 80 chr7:64375053-64375133 1.0000 80 chr7:86562749-86562829 1.0000 80 chr12:110708393-11070847 1.0000 80 chrX:138295640-138295720 1.0000 80 chr3:177149792-177149872 1.0000 80 chr16:65803847-65803927 1.0000 80 chr7:120689670-120689750 1.0000 80 chr3:151595232-151595312 1.0000 80 chr16:79985446-79985526 1.0000 80 chrX:9484294-9484374 1.0000 80 chr4:129482506-129482586 1.0000 80 chr12:102799905-10279998 1.0000 80 chr1:32593506-32593586 1.0000 80 chr1:32338609-32338689 1.0000 80 chr11:22814197-22814277 1.0000 80 chr7:116660226-116660306 1.0000 80 chr11:7626858-7626938 1.0000 80 chr11:47299323-47299403 1.0000 80 chr16:10451255-10451335 1.0000 80 chr6:138290159-138290239 1.0000 80 chr8:125259833-125259913 1.0000 80 chr2:48679417-48679497 1.0000 80 chr4:127656661-127656741 1.0000 80 chr2:218227600-218227680 1.0000 80 chr16:31255513-31255593 1.0000 80 chr1:161464327-161464407 1.0000 80 chr2:201270780-201270860 1.0000 80 chr12:121551936-12155201 1.0000 80 chr6:32164349-32164429 1.0000 80 chr1:15587219-15587299 1.0000 80 chr3:47501200-47501280 1.0000 80 chr8:56926589-56926669 1.0000 80 chr2:232573097-232573177 1.0000 80 chr16:86965097-86965177 1.0000 80 chr11:34486295-34486375 1.0000 80 chrX:55147362-55147442 1.0000 80 chr19:10727867-10727947 1.0000 80 chr15:64722609-64722689 1.0000 80 chr17:47372127-47372207 1.0000 80 chr7:27653863-27653943 1.0000 80 chr12:46613807-46613887 1.0000 80 chr6:37951651-37951731 1.0000 80 chr17:62101723-62101803 1.0000 80 chr1:146849746-146849826 1.0000 80 chr2:170767075-170767155 1.0000 80 chr7:129353476-129353556 1.0000 80 chr7:131280597-131280677 1.0000 80 chr6:27536139-27536219 1.0000 80 chr16:81254170-81254250 1.0000 80 chr6:134294353-134294433 1.0000 80 chr2:27975714-27975794 1.0000 80 chr14:101222172-10122225 1.0000 80 chr12:98902930-98903010 1.0000 80 chr1:169278483-169278563 1.0000 80 chr6:160405311-160405391 1.0000 80 chr6:26502599-26502679 1.0000 80 chr5:180131518-180131598 1.0000 80 chr3:151392019-151392099 1.0000 80 chr1:241859832-241859912 1.0000 80 chr11:100679851-10067993 1.0000 80 chrX:15965986-15966066 1.0000 80 chr1:100905790-100905870 1.0000 80 chr8:20809671-20809751 1.0000 80 chrX:135213343-135213423 1.0000 80 chr11:4017338-4017418 1.0000 80 chr7:139974939-139975019 1.0000 80 chr15:55574605-55574685 1.0000 80 chr11:114018837-11401891 1.0000 80 chr3:130568981-130569061 1.0000 80 chr6:85377471-85377551 1.0000 80 chr2:43406327-43406407 1.0000 80 chr6:139766794-139766874 1.0000 80 chrX:153389512-153389592 1.0000 80 chr10:74560334-74560414 1.0000 80 chr6:119580365-119580445 1.0000 80 chr10:102118975-10211905 1.0000 80 chr5:139990844-139990924 1.0000 80 chr4:159585021-159585101 1.0000 80 chr6:10854343-10854423 1.0000 80 chr5:57309873-57309953 1.0000 80 chr6:22026007-22026087 1.0000 80 chr5:175624372-175624452 1.0000 80 chr12:46824247-46824327 1.0000 80 chr17:17921372-17921452 1.0000 80 chr14:50437423-50437503 1.0000 80 chr1:111423768-111423848 1.0000 80 chr1:25278964-25279044 1.0000 80 chr1:226190734-226190814 1.0000 80 chr14:35122478-35122558 1.0000 80 chr6:7899973-7900053 1.0000 80 chr1:20525598-20525678 1.0000 80 chrX:47572273-47572353 1.0000 80 chr7:117581652-117581732 1.0000 80 chr12:77015537-77015617 1.0000 80 chr11:57568203-57568283 1.0000 80 chr3:150167065-150167145 1.0000 80 chr3:126627674-126627754 1.0000 80 chr7:72149150-72149230 1.0000 80 chr8:124592160-124592240 1.0000 80 chr3:32115915-32115995 1.0000 80 chr7:106364071-106364151 1.0000 80 chr8:97656716-97656796 1.0000 80 chr1:27048424-27048504 1.0000 80 chr8:59508615-59508695 1.0000 80 chr2:202085065-202085145 1.0000 80 chr1:142884944-142885024 1.0000 80 chr19:21505945-21506025 1.0000 80 chr7:66004998-66005078 1.0000 80 chr8:106581406-106581486 1.0000 80 chr1:160919212-160919292 1.0000 80 chr8:73019646-73019726 1.0000 80 chr4:69730277-69730357 1.0000 80 chr10:73740170-73740250 1.0000 80 chr17:65370652-65370732 1.0000 80 chr18:34004832-34004912 1.0000 80 chr2:55283331-55283411 1.0000 80 chr12:70446871-70446951 1.0000 80 chr5:77955694-77955774 1.0000 80 chr10:35703413-35703493 1.0000 80 chr1:154589556-154589636 1.0000 80 chr9:140196731-140196811 1.0000 80 chr20:37321670-37321750 1.0000 80 chr15:95388496-95388576 1.0000 80 chr21:43619701-43619781 1.0000 80 chr7:73208031-73208111 1.0000 80 chr11:91638673-91638753 1.0000 80 chr3:80782939-80783019 1.0000 80 chr4:140075853-140075933 1.0000 80 chr1:91187135-91187215 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SOX6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SOX6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.281 C 0.217 G 0.208 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.281 C 0.217 G 0.208 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AACAATRG MEME-1 width = 8 sites = 131 llr = 912 E-value = 7.9e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAATRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6a:aa332 pos.-specific C 2:a::::2 probability G 2:::::65 matrix T 1::::711 bits 2.3 * 2.0 * 1.8 **** 1.6 **** Relative 1.4 **** Entropy 1.1 **** (10.0 bits) 0.9 ***** 0.7 ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAATGG consensus G AAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAATRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:37321670-37321750 45 1.73e-05 GAGATAAGGA AACAATGG GCGACCCCTC chr9:140196731-140196811 41 1.73e-05 ATATTTGCAT AACAATGG CAGCCCGTGA chr1:142884944-142885024 49 1.73e-05 CGGAAACGAA AACAATGG GAGTGATGTG chr7:106364071-106364151 63 1.73e-05 TCCTTTCTGG AACAATGG ACACATTTTC chr14:101222172-10122225 31 1.73e-05 tatcttcaga aacaatgg aagctggaag chr11:34486295-34486375 51 1.73e-05 GCTCTTCCAC AACAATGG AAAACTCTCC chr16:86965097-86965177 23 1.73e-05 AATGCGCAGG AACAATGG GTGAGTCAGG chr5:159066078-159066158 35 1.73e-05 tcatcagctc aacaatgg cactaaagat chr2:85695988-85696068 14 1.73e-05 TGTGGTTCTA AACAATGG ATCGTTAAGT chr8:97656716-97656796 14 4.65e-05 AGTTTCGTTA AACAAAGG AATTTGCACT chr5:57309873-57309953 69 4.65e-05 atatgcagag aacaaagg aatc chr1:241859832-241859912 1 4.65e-05 . aacaaagg gtggattatt chr5:180131518-180131598 55 4.65e-05 TTCTTTCTGT AACAAAGG TTTACATGCT chr6:32164349-32164429 40 4.65e-05 GCGCGGGAGG GACAATGG GGCATTGTTC chr9:259882-259962 22 4.65e-05 TGAAAGCCAA AACAAAGG AATGACCACT chr10:3878067-3878147 40 4.65e-05 ACAGGCTGAG GACAATGG GGCAGAGATA chr22:39848838-39848918 34 4.65e-05 agactgtctg gacaatgg tttcttatca chr12:11802097-11802177 21 4.65e-05 CGAGAAGCAG AACAAAGG CTATTGTTTT chr6:84797002-84797082 13 4.65e-05 gtagataaga gacaatgg ttgcattctt chr2:132426562-132426642 8 4.65e-05 gaagcag aacaaagg cagttaatca chr12:93396474-93396554 15 4.65e-05 CTGTGTCCAG AACAAAGG GGTAGATTAA chr11:22814197-22814277 58 6.98e-05 GGCCCCATGG AACAATAG GCTCATTTAT chr1:32338609-32338689 69 6.98e-05 aagcagagaa aacaatag ggcc chr2:219226282-219226362 5 6.98e-05 gtga aacaatag agcagagaaa chr3:38369300-38369380 40 6.98e-05 cttaggtttt aacaatag tgatattatc chr12:45586313-45586393 14 6.98e-05 TAACTACCAA AACAATAG ATGAGTCACT chr1:54875189-54875269 64 6.98e-05 GGATACCACC AACAATAG GGTTAGATA chr11:47025255-47025335 41 6.98e-05 CTGGGGCTGC AACAATAG ATAATACTAC chr1:92193503-92193583 44 6.98e-05 TGTTTTACAT AACAATAG AAACATATGC chr9:67297631-67297711 36 6.98e-05 TAAAATCTGG AACAATAG GGTGTGGGGT chr10:114220829-11422090 25 6.98e-05 tattacccac aacaatag cagttgcctg chr10:111841884-11184196 35 6.98e-05 AACCACAGTG AACAATAG GCTATTAACG chr4:159585021-159585101 48 8.32e-05 ggaaaaaaga cacaatgg gtattcagta chr7:27653863-27653943 18 8.32e-05 TCACACTCGC CACAATGG CACCTAATAT chr18:60517897-60517977 25 8.32e-05 TACTGAGAAA CACAATGG GGTTTGTGTG chr2:202085065-202085145 52 1.25e-04 gttccaggaa aacaatga gccttaataa chr6:37951651-37951731 10 1.25e-04 tgttcacac aacaatga aattgcattt chr12:46613807-46613887 49 1.25e-04 AACTTCTAAA AACAATGA GTGGGACTCA chr15:64722609-64722689 41 1.25e-04 TGTTGACTGC AACAATGC ATCAAGGCTG chr11:14786832-14786912 27 1.25e-04 CTACATAGAG AACAATGA AATAAAGCCT chr6:168091324-168091404 49 1.25e-04 agaaactcaa aacaatgc aaccatttgt chr11:59961710-59961790 48 1.25e-04 cagctagaaa aacaatgc ttcaccatgc chr15:48883015-48883095 18 1.25e-04 CTATCAGTTC AACAATGC TTTCCCCTAT chr12:112851707-11285178 32 1.25e-04 gacacagaac aacaatga cagaacccac chr14:75087466-75087546 40 1.25e-04 tacctttctA AACAATGC CTAGAAAAAG chr16:10451255-10451335 13 1.37e-04 agacacaaag gacaaagg cgtttctatg chr8:108299868-108299948 54 1.37e-04 TGATATGTAG GACAAAGG CTTGGCTTGG chr3:186600747-186600827 23 1.37e-04 agatgcacag gacaaagg gatgattcac chr20:48317260-48317340 41 1.37e-04 tcccaggcaa gacaaagg gggacagagc chr10:74560334-74560414 71 1.76e-04 AATCACTGAT AACAAAAG CA chr7:131280597-131280677 61 1.76e-04 tctgcttagg aacaaaag gaaagacagc chr16:65803847-65803927 26 1.76e-04 aggtcattca aacaaaag aacagcctgc chr3:49256119-49256199 12 1.76e-04 acctttttca gacaatag tggcatagag chr12:1281023-1281103 44 1.76e-04 TAAAAGCCAA AACAAAAG ATGTCAATAA chr9:112956727-112956807 61 1.76e-04 tctgtttagg aacaaaag gaaaggcagt chr3:151392019-151392099 65 2.01e-04 gaggaacaaa aacaattg ttctcatt chr7:129353476-129353556 52 2.01e-04 aaaagcaaag aacaattg cagtgagata chr10:32348560-32348640 13 2.01e-04 TCACTTCTTC AACAATTG CTGGAGTCTC chr5:149957835-149957915 35 2.01e-04 CGATAAGAAT AACAATTG CAATTATCGC chr3:45615749-45615829 35 2.01e-04 gcaatactga aacaattg cggttcatcc chr4:123724982-123725062 23 2.13e-04 ggccccaaag cacaaagg gaggatgtgg chr6:90869909-90869989 40 2.13e-04 TTAGACAATA CACAAAGG ACAGTCAGCA chr3:80782939-80783019 50 3.01e-04 atgagagcag aacaaaga atgatggcac chr1:154589556-154589636 69 3.01e-04 TTGTTGCTTA GACAATGC CTAG chr11:57568203-57568283 23 3.01e-04 GAGAGCTCCA CACAATAG ATTATCCTCT chr7:117581652-117581732 29 3.01e-04 attcattcca gacaatga attactcttg chrX:153389512-153389592 11 3.01e-04 TAAGGAAACA AACAAAGA CTGTGTGATA chrX:15965986-15966066 42 3.01e-04 GAGGATTCAC AACAAAGC CTGGACTCCT chr8:56926589-56926669 26 3.01e-04 ggaagatctg gacaatgc tatcactatt chr12:121551936-12155201 19 3.01e-04 CACGAGAGAA GACAATGA ATCCATTACA chr12:102799905-10279998 63 3.01e-04 CTTTGTTGCA GACAATGA CAGTGACAAA chr12:110708393-11070847 50 3.01e-04 TCAGCTTGGG AACAAAGA TCCTATTCTA chr2:15698243-15698323 40 3.01e-04 acgtgcagtt cacaatag ggtttgcact chr7:110714943-110715023 13 3.01e-04 AATCTTTAAG AACAAAGA AATTTGAGAG chr9:99871601-99871681 31 3.01e-04 CCTTGACCAC AACAAAGC CCGGTGGCAC chr4:8453332-8453412 52 3.01e-04 TATCTGCATA GACAATGA GCACAGTGTA chr2:45666152-45666232 52 3.01e-04 gaggccagga gacaatga aacggtatct chr8:124592160-124592240 41 3.57e-04 AGAGATAAAG AACAATAC AAGACAACAA chr12:46824247-46824327 14 3.57e-04 TGAAATTCTG AACAATAC TAATTGTTTG chr4:127656661-127656741 55 3.57e-04 CACACAAGAA AACAAtac tgtcagtgtc chr7:120689670-120689750 20 3.57e-04 GCTTTTGCCT AACAATAC CCTTTTCTTA chr10:112243587-11224366 1 3.57e-04 . aacaataa aaaagaacaa chr15:95790448-95790528 12 3.57e-04 AGTGTCATGT AACAATAA GTGTTTACTT chr10:73740170-73740250 23 3.89e-04 TTCTAATCTA CACAATGC TGTTGTGTTT chr6:160405311-160405391 39 3.89e-04 aatgtcgtag cacaatgc attagtcaca chr5:71522950-71523030 10 3.89e-04 GGCAAATGA CACAATGA GAGCAAAGAG chr4:140075853-140075933 19 4.24e-04 atgagtgcag gacaaaag agttctaagt chrX:47572273-47572353 14 4.24e-04 ttcaccctca tacaatgg gccccagtaa chr6:139766794-139766874 32 4.24e-04 ACTCCTTTTA GACAAAAG AAGGAAACTA chr2:134890113-134890193 61 4.24e-04 actttcacac tacaatgg cagaggccag chr6:135612995-135613075 71 4.24e-04 gagacaacga tacaatgg ac chr15:55574605-55574685 15 4.65e-04 ctgtaaGTGT AACAAATG TGGTTTCCTT chr22:29816199-29816279 28 4.65e-04 ATGTGAGAAA AACAAATG AGGAAGTAGG chr22:29760264-29760344 43 4.65e-04 ACATGAAAAA AACAAATG AGGAAGCAGG chr18:47250278-47250358 21 4.65e-04 GGCGTCAGCG GACAATTG AGCATTGTTC chr3:20371634-20371714 10 4.65e-04 ACTTGGACA GACAATTG AAAAAGTAAT chr8:106581406-106581486 64 4.90e-04 tcccacttag aacaatgt ctagcttat chr11:7626858-7626938 44 4.90e-04 TGATAAGGAG AACAATGT TGCTTCAAGG chr10:74365000-74365080 22 4.90e-04 agaatgccac aacaatgt ctggaagtta chr5:77955694-77955774 36 5.36e-04 CTACTGATAA CACAAAAG GAATTTAGGA chr14:50437423-50437503 27 5.36e-04 CGCTTAGCTT GACAAAGA GCTTGGTTTA chr14:103780134-10378021 65 5.36e-04 gagactctga gacaaagc ttcattgg chr1:160919212-160919292 32 6.49e-04 agaaaccttg gacaatac ctggctttcc chr6:138290159-138290239 32 6.49e-04 ttgagaaaag aacaaaaa aagaccctta chr4:159841836-159841916 5 6.49e-04 tcaa gacaatac atgcaccact chr21:43619701-43619781 18 7.08e-04 TTTCTGCAGT AACAATTA CATTAGGCAA chr8:59508615-59508695 58 7.08e-04 GAAGGGCTGA AACAATTA CCATCTTAAA chr17:62101723-62101803 40 7.08e-04 GCAATTTTAC AACAATTA CTCTAGAAGA chr16:31255513-31255593 2 7.08e-04 C AACAATTC AGTTCAGCCT chr1:32593506-32593586 11 7.08e-04 TGAAGGTAGA AACAATTA CACAGTGCCT chr11:16215777-16215857 25 7.38e-04 ACAAAACCAC CACAAAGA CCTCTATTAT chr1:109942086-109942166 31 7.38e-04 GTTTGGGTGA CACAAAGA TGAATGGTCT chr12:70446871-70446951 61 7.99e-04 cagattgcaa cacaatac cgatgagtca chr6:85377471-85377551 43 7.99e-04 ctggtctgat tacaaagg gaaattctta chr1:146849746-146849826 9 7.99e-04 ggtctggt tacaaagg gaactttcta chr8:86940397-86940477 30 7.99e-04 TAGAATCTGA CACAATAC TTGGTTTCAC chr15:58407177-58407257 26 7.99e-04 TGTGCTCCTC CACAATAA CATTCTatct chr5:87547077-87547157 27 8.41e-04 tcttaggtat tacaatag tgatgttatc chr18:9960379-9960459 60 8.41e-04 AGATAACAGC TACAATAG TATTTGCATT chr11:118586722-11858680 64 8.82e-04 ccttcaccct gacaatgt aaattaaca chr4:124521281-124521361 50 8.82e-04 TCCTGGTTAA GACAATGT GCTGTCTGAT chr8:125259833-125259913 34 1.02e-03 GCTGTCAGCG GACAAAAC CCACAACAAT chr7:72149150-72149230 5 1.13e-03 tttg aacaaata atgactcagg chr6:76339702-76339782 60 1.13e-03 gaatgagggc cacaatgt gcaacttgtg chr1:40714246-40714326 66 1.13e-03 ATTAAGTCAT CACAATGT GTTCATT chr12:77022677-77022757 47 1.13e-03 aagaggcaag aacaaata tgaaggaaaa chr6:116575346-116575426 41 1.18e-03 GTCTTCTTGT CACAAAAA GAATTTCGTC chr10:111836825-11183690 9 1.18e-03 AATTGCCA CACAAAAA CCAGCTTAAG chr13:60035683-60035763 1 1.24e-03 . cacaattc cactcttgtc chr3:129539560-129539640 70 1.36e-03 CAGAATTAAA AACAATCG ATG chr1:20525598-20525678 39 1.59e-03 TGACTAGCAC AACAGTGG CAGGAGATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAATRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:37321670-37321750 1.7e-05 44_[+1]_28 chr9:140196731-140196811 1.7e-05 40_[+1]_32 chr1:142884944-142885024 1.7e-05 48_[+1]_24 chr7:106364071-106364151 1.7e-05 62_[+1]_10 chr14:101222172-10122225 1.7e-05 30_[+1]_42 chr11:34486295-34486375 1.7e-05 50_[+1]_22 chr16:86965097-86965177 1.7e-05 22_[+1]_50 chr5:159066078-159066158 1.7e-05 34_[+1]_38 chr2:85695988-85696068 1.7e-05 13_[+1]_59 chr8:97656716-97656796 4.6e-05 13_[+1]_59 chr5:57309873-57309953 4.6e-05 68_[+1]_4 chr1:241859832-241859912 4.6e-05 [+1]_72 chr5:180131518-180131598 4.6e-05 54_[+1]_18 chr6:32164349-32164429 4.6e-05 39_[+1]_33 chr9:259882-259962 4.6e-05 21_[+1]_51 chr10:3878067-3878147 4.6e-05 39_[+1]_33 chr22:39848838-39848918 4.6e-05 33_[+1]_39 chr12:11802097-11802177 4.6e-05 20_[+1]_52 chr6:84797002-84797082 4.6e-05 12_[+1]_60 chr2:132426562-132426642 4.6e-05 7_[+1]_65 chr12:93396474-93396554 4.6e-05 14_[+1]_58 chr11:22814197-22814277 7e-05 57_[+1]_15 chr1:32338609-32338689 7e-05 68_[+1]_4 chr2:219226282-219226362 7e-05 4_[+1]_68 chr3:38369300-38369380 7e-05 39_[+1]_33 chr12:45586313-45586393 7e-05 13_[+1]_59 chr1:54875189-54875269 7e-05 63_[+1]_9 chr11:47025255-47025335 7e-05 40_[+1]_32 chr1:92193503-92193583 7e-05 43_[+1]_29 chr9:67297631-67297711 7e-05 35_[+1]_37 chr10:114220829-11422090 7e-05 24_[+1]_48 chr10:111841884-11184196 7e-05 34_[+1]_38 chr4:159585021-159585101 8.3e-05 47_[+1]_25 chr7:27653863-27653943 8.3e-05 17_[+1]_55 chr18:60517897-60517977 8.3e-05 24_[+1]_48 chr2:202085065-202085145 0.00012 51_[+1]_21 chr6:37951651-37951731 0.00012 9_[+1]_63 chr12:46613807-46613887 0.00012 48_[+1]_24 chr15:64722609-64722689 0.00012 40_[+1]_32 chr11:14786832-14786912 0.00012 26_[+1]_46 chr6:168091324-168091404 0.00012 48_[+1]_24 chr11:59961710-59961790 0.00012 47_[+1]_25 chr15:48883015-48883095 0.00012 17_[+1]_55 chr12:112851707-11285178 0.00012 31_[+1]_41 chr14:75087466-75087546 0.00012 39_[+1]_33 chr16:10451255-10451335 0.00014 12_[+1]_60 chr8:108299868-108299948 0.00014 53_[+1]_19 chr3:186600747-186600827 0.00014 22_[+1]_50 chr20:48317260-48317340 0.00014 40_[+1]_32 chr10:74560334-74560414 0.00018 70_[+1]_2 chr7:131280597-131280677 0.00018 60_[+1]_12 chr16:65803847-65803927 0.00018 25_[+1]_47 chr3:49256119-49256199 0.00018 11_[+1]_61 chr12:1281023-1281103 0.00018 43_[+1]_29 chr9:112956727-112956807 0.00018 60_[+1]_12 chr3:151392019-151392099 0.0002 64_[+1]_8 chr7:129353476-129353556 0.0002 51_[+1]_21 chr10:32348560-32348640 0.0002 12_[+1]_60 chr5:149957835-149957915 0.0002 34_[+1]_38 chr3:45615749-45615829 0.0002 34_[+1]_38 chr4:123724982-123725062 0.00021 22_[+1]_50 chr6:90869909-90869989 0.00021 39_[+1]_33 chr3:80782939-80783019 0.0003 49_[+1]_23 chr1:154589556-154589636 0.0003 68_[+1]_4 chr11:57568203-57568283 0.0003 22_[+1]_50 chr7:117581652-117581732 0.0003 28_[+1]_44 chrX:153389512-153389592 0.0003 10_[+1]_62 chrX:15965986-15966066 0.0003 41_[+1]_31 chr8:56926589-56926669 0.0003 25_[+1]_47 chr12:121551936-12155201 0.0003 18_[+1]_54 chr12:102799905-10279998 0.0003 62_[+1]_10 chr12:110708393-11070847 0.0003 49_[+1]_23 chr2:15698243-15698323 0.0003 39_[+1]_33 chr7:110714943-110715023 0.0003 12_[+1]_60 chr9:99871601-99871681 0.0003 30_[+1]_42 chr4:8453332-8453412 0.0003 51_[+1]_21 chr2:45666152-45666232 0.0003 51_[+1]_21 chr8:124592160-124592240 0.00036 40_[+1]_32 chr12:46824247-46824327 0.00036 13_[+1]_59 chr4:127656661-127656741 0.00036 54_[+1]_18 chr7:120689670-120689750 0.00036 19_[+1]_53 chr10:112243587-11224366 0.00036 [+1]_72 chr15:95790448-95790528 0.00036 11_[+1]_61 chr10:73740170-73740250 0.00039 22_[+1]_50 chr6:160405311-160405391 0.00039 38_[+1]_34 chr5:71522950-71523030 0.00039 9_[+1]_63 chr4:140075853-140075933 0.00042 18_[+1]_54 chrX:47572273-47572353 0.00042 13_[+1]_59 chr6:139766794-139766874 0.00042 31_[+1]_41 chr2:134890113-134890193 0.00042 60_[+1]_12 chr6:135612995-135613075 0.00042 70_[+1]_2 chr15:55574605-55574685 0.00047 14_[+1]_58 chr22:29816199-29816279 0.00047 27_[+1]_45 chr22:29760264-29760344 0.00047 42_[+1]_30 chr18:47250278-47250358 0.00047 20_[+1]_52 chr3:20371634-20371714 0.00047 9_[+1]_63 chr8:106581406-106581486 0.00049 63_[+1]_9 chr11:7626858-7626938 0.00049 43_[+1]_29 chr10:74365000-74365080 0.00049 21_[+1]_51 chr5:77955694-77955774 0.00054 35_[+1]_37 chr14:50437423-50437503 0.00054 26_[+1]_46 chr14:103780134-10378021 0.00054 64_[+1]_8 chr1:160919212-160919292 0.00065 31_[+1]_41 chr6:138290159-138290239 0.00065 31_[+1]_41 chr4:159841836-159841916 0.00065 4_[+1]_68 chr21:43619701-43619781 0.00071 17_[+1]_55 chr8:59508615-59508695 0.00071 57_[+1]_15 chr17:62101723-62101803 0.00071 39_[+1]_33 chr16:31255513-31255593 0.00071 1_[+1]_71 chr1:32593506-32593586 0.00071 10_[+1]_62 chr11:16215777-16215857 0.00074 24_[+1]_48 chr1:109942086-109942166 0.00074 30_[+1]_42 chr12:70446871-70446951 0.0008 60_[+1]_12 chr6:85377471-85377551 0.0008 42_[+1]_30 chr1:146849746-146849826 0.0008 8_[+1]_64 chr8:86940397-86940477 0.0008 29_[+1]_43 chr15:58407177-58407257 0.0008 25_[+1]_47 chr5:87547077-87547157 0.00084 26_[+1]_46 chr18:9960379-9960459 0.00084 59_[+1]_13 chr11:118586722-11858680 0.00088 63_[+1]_9 chr4:124521281-124521361 0.00088 49_[+1]_23 chr8:125259833-125259913 0.001 33_[+1]_39 chr7:72149150-72149230 0.0011 4_[+1]_68 chr6:76339702-76339782 0.0011 59_[+1]_13 chr1:40714246-40714326 0.0011 65_[+1]_7 chr12:77022677-77022757 0.0011 46_[+1]_26 chr6:116575346-116575426 0.0012 40_[+1]_32 chr10:111836825-11183690 0.0012 8_[+1]_64 chr13:60035683-60035763 0.0012 [+1]_72 chr3:129539560-129539640 0.0014 69_[+1]_3 chr1:20525598-20525678 0.0016 38_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAATRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAATRG width=8 seqs=131 chr20:37321670-37321750 ( 45) AACAATGG 1 chr9:140196731-140196811 ( 41) AACAATGG 1 chr1:142884944-142885024 ( 49) AACAATGG 1 chr7:106364071-106364151 ( 63) AACAATGG 1 chr14:101222172-10122225 ( 31) AACAATGG 1 chr11:34486295-34486375 ( 51) AACAATGG 1 chr16:86965097-86965177 ( 23) AACAATGG 1 chr5:159066078-159066158 ( 35) AACAATGG 1 chr2:85695988-85696068 ( 14) AACAATGG 1 chr8:97656716-97656796 ( 14) AACAAAGG 1 chr5:57309873-57309953 ( 69) AACAAAGG 1 chr1:241859832-241859912 ( 1) AACAAAGG 1 chr5:180131518-180131598 ( 55) AACAAAGG 1 chr6:32164349-32164429 ( 40) GACAATGG 1 chr9:259882-259962 ( 22) AACAAAGG 1 chr10:3878067-3878147 ( 40) GACAATGG 1 chr22:39848838-39848918 ( 34) GACAATGG 1 chr12:11802097-11802177 ( 21) AACAAAGG 1 chr6:84797002-84797082 ( 13) GACAATGG 1 chr2:132426562-132426642 ( 8) AACAAAGG 1 chr12:93396474-93396554 ( 15) AACAAAGG 1 chr11:22814197-22814277 ( 58) AACAATAG 1 chr1:32338609-32338689 ( 69) AACAATAG 1 chr2:219226282-219226362 ( 5) AACAATAG 1 chr3:38369300-38369380 ( 40) AACAATAG 1 chr12:45586313-45586393 ( 14) AACAATAG 1 chr1:54875189-54875269 ( 64) AACAATAG 1 chr11:47025255-47025335 ( 41) AACAATAG 1 chr1:92193503-92193583 ( 44) AACAATAG 1 chr9:67297631-67297711 ( 36) AACAATAG 1 chr10:114220829-11422090 ( 25) AACAATAG 1 chr10:111841884-11184196 ( 35) AACAATAG 1 chr4:159585021-159585101 ( 48) CACAATGG 1 chr7:27653863-27653943 ( 18) CACAATGG 1 chr18:60517897-60517977 ( 25) CACAATGG 1 chr2:202085065-202085145 ( 52) AACAATGA 1 chr6:37951651-37951731 ( 10) AACAATGA 1 chr12:46613807-46613887 ( 49) AACAATGA 1 chr15:64722609-64722689 ( 41) AACAATGC 1 chr11:14786832-14786912 ( 27) AACAATGA 1 chr6:168091324-168091404 ( 49) AACAATGC 1 chr11:59961710-59961790 ( 48) AACAATGC 1 chr15:48883015-48883095 ( 18) AACAATGC 1 chr12:112851707-11285178 ( 32) AACAATGA 1 chr14:75087466-75087546 ( 40) AACAATGC 1 chr16:10451255-10451335 ( 13) GACAAAGG 1 chr8:108299868-108299948 ( 54) GACAAAGG 1 chr3:186600747-186600827 ( 23) GACAAAGG 1 chr20:48317260-48317340 ( 41) GACAAAGG 1 chr10:74560334-74560414 ( 71) AACAAAAG 1 chr7:131280597-131280677 ( 61) AACAAAAG 1 chr16:65803847-65803927 ( 26) AACAAAAG 1 chr3:49256119-49256199 ( 12) GACAATAG 1 chr12:1281023-1281103 ( 44) AACAAAAG 1 chr9:112956727-112956807 ( 61) AACAAAAG 1 chr3:151392019-151392099 ( 65) AACAATTG 1 chr7:129353476-129353556 ( 52) AACAATTG 1 chr10:32348560-32348640 ( 13) AACAATTG 1 chr5:149957835-149957915 ( 35) AACAATTG 1 chr3:45615749-45615829 ( 35) AACAATTG 1 chr4:123724982-123725062 ( 23) CACAAAGG 1 chr6:90869909-90869989 ( 40) CACAAAGG 1 chr3:80782939-80783019 ( 50) AACAAAGA 1 chr1:154589556-154589636 ( 69) GACAATGC 1 chr11:57568203-57568283 ( 23) CACAATAG 1 chr7:117581652-117581732 ( 29) GACAATGA 1 chrX:153389512-153389592 ( 11) AACAAAGA 1 chrX:15965986-15966066 ( 42) AACAAAGC 1 chr8:56926589-56926669 ( 26) GACAATGC 1 chr12:121551936-12155201 ( 19) GACAATGA 1 chr12:102799905-10279998 ( 63) GACAATGA 1 chr12:110708393-11070847 ( 50) AACAAAGA 1 chr2:15698243-15698323 ( 40) CACAATAG 1 chr7:110714943-110715023 ( 13) AACAAAGA 1 chr9:99871601-99871681 ( 31) AACAAAGC 1 chr4:8453332-8453412 ( 52) GACAATGA 1 chr2:45666152-45666232 ( 52) GACAATGA 1 chr8:124592160-124592240 ( 41) AACAATAC 1 chr12:46824247-46824327 ( 14) AACAATAC 1 chr4:127656661-127656741 ( 55) AACAATAC 1 chr7:120689670-120689750 ( 20) AACAATAC 1 chr10:112243587-11224366 ( 1) AACAATAA 1 chr15:95790448-95790528 ( 12) AACAATAA 1 chr10:73740170-73740250 ( 23) CACAATGC 1 chr6:160405311-160405391 ( 39) CACAATGC 1 chr5:71522950-71523030 ( 10) CACAATGA 1 chr4:140075853-140075933 ( 19) GACAAAAG 1 chrX:47572273-47572353 ( 14) TACAATGG 1 chr6:139766794-139766874 ( 32) GACAAAAG 1 chr2:134890113-134890193 ( 61) TACAATGG 1 chr6:135612995-135613075 ( 71) TACAATGG 1 chr15:55574605-55574685 ( 15) AACAAATG 1 chr22:29816199-29816279 ( 28) AACAAATG 1 chr22:29760264-29760344 ( 43) AACAAATG 1 chr18:47250278-47250358 ( 21) GACAATTG 1 chr3:20371634-20371714 ( 10) GACAATTG 1 chr8:106581406-106581486 ( 64) AACAATGT 1 chr11:7626858-7626938 ( 44) AACAATGT 1 chr10:74365000-74365080 ( 22) AACAATGT 1 chr5:77955694-77955774 ( 36) CACAAAAG 1 chr14:50437423-50437503 ( 27) GACAAAGA 1 chr14:103780134-10378021 ( 65) GACAAAGC 1 chr1:160919212-160919292 ( 32) GACAATAC 1 chr6:138290159-138290239 ( 32) AACAAAAA 1 chr4:159841836-159841916 ( 5) GACAATAC 1 chr21:43619701-43619781 ( 18) AACAATTA 1 chr8:59508615-59508695 ( 58) AACAATTA 1 chr17:62101723-62101803 ( 40) AACAATTA 1 chr16:31255513-31255593 ( 2) AACAATTC 1 chr1:32593506-32593586 ( 11) AACAATTA 1 chr11:16215777-16215857 ( 25) CACAAAGA 1 chr1:109942086-109942166 ( 31) CACAAAGA 1 chr12:70446871-70446951 ( 61) CACAATAC 1 chr6:85377471-85377551 ( 43) TACAAAGG 1 chr1:146849746-146849826 ( 9) TACAAAGG 1 chr8:86940397-86940477 ( 30) CACAATAC 1 chr15:58407177-58407257 ( 26) CACAATAA 1 chr5:87547077-87547157 ( 27) TACAATAG 1 chr18:9960379-9960459 ( 60) TACAATAG 1 chr11:118586722-11858680 ( 64) GACAATGT 1 chr4:124521281-124521361 ( 50) GACAATGT 1 chr8:125259833-125259913 ( 34) GACAAAAC 1 chr7:72149150-72149230 ( 5) AACAAATA 1 chr6:76339702-76339782 ( 60) CACAATGT 1 chr1:40714246-40714326 ( 66) CACAATGT 1 chr12:77022677-77022757 ( 47) AACAAATA 1 chr6:116575346-116575426 ( 41) CACAAAAA 1 chr10:111836825-11183690 ( 9) CACAAAAA 1 chr13:60035683-60035763 ( 1) CACAATTC 1 chr3:129539560-129539640 ( 70) AACAATCG 1 chr1:20525598-20525678 ( 39) AACAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAATRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.87522 E= 7.9e-056 105 -44 -1 -246 183 -1368 -1368 -1368 -1368 221 -1368 -1368 183 -1368 -1368 -1368 182 -1368 -476 -1368 22 -1368 -1368 119 8 -482 142 -110 -29 -30 138 -246 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAATRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 131 E= 7.9e-056 0.580153 0.160305 0.206107 0.053435 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.992366 0.000000 0.007634 0.000000 0.328244 0.000000 0.000000 0.671756 0.297710 0.007634 0.557252 0.137405 0.229008 0.175573 0.541985 0.053435 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAATRG MEME-1 regular expression -------------------------------------------------------------------------------- [AG]ACAA[TA][GA][GA] -------------------------------------------------------------------------------- Time 4.80 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCTS MEME-2 width = 8 sites = 90 llr = 668 E-value = 1.5e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCTS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::a::22 pos.-specific C 61:::a:2 probability G 2::::::4 matrix T 19a:a:82 bits 2.3 * 2.0 * 1.8 **** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ***** (10.7 bits) 0.9 ****** 0.7 ****** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CTTATCTG consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:70446871-70446951 2 2.08e-05 c cttatctg gtaactgagt chr5:175624372-175624452 9 2.08e-05 ttgttgtg cttatctg gaagggagaa chr11:114018837-11401891 59 2.08e-05 CGCAGGCAGC CTTATCTG CAAGTGCTGT chr15:55574605-55574685 30 2.08e-05 ATGTGGTTTC CTTATCTG GGTGGCAAAA chr7:139974939-139975019 51 2.08e-05 gataagaaaa cttatctg aacatttaag chr6:26502599-26502679 38 2.08e-05 agacttgcag cttatctg ccttatctct chrX:55147362-55147442 71 2.08e-05 ctttgtcctg cttatctg gg chr4:129482506-129482586 41 2.08e-05 GGAAATGCCT CTTATCTG TCAGTGTTGT chr7:120689670-120689750 34 2.08e-05 ATACCCTTTT CTTATCTG TTTCTAACTG chr20:51797721-51797801 70 2.08e-05 gtgtttgttc cttatctg ttt chr10:66627462-66627542 59 2.08e-05 tgcaaactcc cttatctg agtatgtcca chr4:8453332-8453412 40 2.08e-05 GTTTGTTGCC CTTATCTG CATAGACAAT chr2:61482851-61482931 53 2.08e-05 ctttgtccag cttatctg tgttgcagac chr2:18739897-18739977 48 2.08e-05 gagataaatg cttatctg attgctgact chr11:91638673-91638753 14 4.26e-05 AAGTATCTCA CTTATCTC CATCTGCCAG chr12:77015537-77015617 39 4.26e-05 TTCAATATGT CTTATCTC TCTTTCTAAA chr4:127656661-127656741 23 4.26e-05 ACACTGGTGT CTTATCTC ACAGACCAGA chr1:66153650-66153730 35 4.26e-05 ACATTCTTGG CTTATCTC AATTCTTTCA chr2:178545111-178545191 6 4.26e-05 GACTC CTTATCTC CACCTCCAAT chr15:40398741-40398821 39 4.26e-05 CAAGGAAATT CTTATCTC AGTCTGAGCT chr1:100107795-100107875 50 4.26e-05 gagcacgcgt cttatctc tccagccaga chr10:35703413-35703493 46 6.24e-05 tattctgttg cttatcag caagtcacag chr6:10854343-10854423 48 6.24e-05 ttgttggact cttatcag tagttctgct chr17:62101723-62101803 5 6.24e-05 AAAT CTTATCAG ACCTGCCACC chr22:39848838-39848918 45 6.24e-05 acaatggttt cttatcag gaagggatga chr11:16215777-16215857 43 6.24e-05 CCTCTATTAT CTTATCAG TCTTTGGTTA chr4:159841836-159841916 34 6.24e-05 aacagagacc cttatcag tagttctgct chr8:53601113-53601193 48 6.24e-05 aacatagacc cttatcag tagttctgct chr14:75087466-75087546 66 6.24e-05 AGCAACTGTA CTTATCAG TGACATA chr10:73740170-73740250 58 9.20e-05 AAAAAAAAAG CTTATCTT AACCTACCAA chr1:27048424-27048504 38 9.20e-05 TGAGTTTTCT CTTATCTT CTGGTCTGGA chr1:169278483-169278563 39 9.20e-05 cctaactttg cttatctt taagaaacag chr16:81254170-81254250 72 9.20e-05 CACCTGTCTG CTTATCTT T chr19:10727867-10727947 41 9.20e-05 TGTTCTTCTT CTTATCTT GCAGCATTGT chr11:119997464-11999754 57 9.20e-05 ttgtacatgt cttatctt cccagctgga chr3:129539560-129539640 9 9.20e-05 CCAGCACT CTTATCTT ACCCTTCCCA chr1:32593506-32593586 54 1.40e-04 TAACCATTTG GTTATCTG CAacacacac chr7:18217990-18218070 36 1.40e-04 TCTAAGGTGG CTTATCTA TTCATTGAAC chr10:32348560-32348640 30 1.40e-04 GCTGGAGTCT CTTATCTA AAACCCTGAC chr6:168091324-168091404 69 1.40e-04 ccatttgtct cttatcta cccc chr18:44011934-44012014 41 1.40e-04 cacctttcct gttatctg tccttgtctg chr5:87547077-87547157 39 1.40e-04 caatagtgat gttatctg taggagtaac chr2:238848996-238849076 40 1.40e-04 tgcaagttcc cttatcta tgcctgcagg chr2:85695988-85696068 53 1.40e-04 GAGCAGTGCC CTTATCTA TACGTGGCAG chr7:73208031-73208111 69 1.61e-04 TGGCTCCGGC CTTATCAC TGAC chr10:102118975-10211905 17 1.61e-04 GCTTTCCTCC CTTATCAC CTCACCCTTT chr7:131280597-131280677 34 1.89e-04 tgtttaatct tttatctg tagctactgt chr16:10451255-10451335 45 1.89e-04 gccttgttcc tttatctg aatgggccat chr12:128801830-12880191 47 1.89e-04 TGATAACACG TTTATCTG TTCAAGCCAG chr9:112956727-112956807 38 1.89e-04 tatttaacct tttatctg tgctatctgt chr8:73019646-73019726 70 2.10e-04 TAATTGGAAA GTTATCTC AGT chr2:43406327-43406407 20 2.10e-04 GAACGATTGA GTTATCTC CACTCGCATC chr6:11393336-11393416 35 2.10e-04 TTCCCACTGT GTTATCTC CCTGGCTGCC chr15:75432690-75432770 66 2.10e-04 TTTGTCTTCT GTTATCTC CCTGCTG chr12:93396474-93396554 33 2.10e-04 GGTAGATTAA GTTATCTC TAAAATTCCC chr5:57309873-57309953 8 2.37e-04 agataat attatctg taaatacatt chr11:59961710-59961790 9 2.37e-04 gacttgag attatctg tctagtgatc chr17:65370652-65370732 9 2.95e-04 CTCTTTGT CTTATCAT TCCTCTCTGG chr3:32115915-32115995 2 2.95e-04 c tttatctc cagaacccag chr7:64375053-64375133 9 2.95e-04 ACTTTATT TTTATCTC TGTGGAGTAG chr2:219226282-219226362 38 2.95e-04 cagatatgca tttatctc acgtgagcag chr1:154589556-154589636 25 3.41e-04 TGAGAGATAA CTTATCAA AAACCCCTGC chr8:97656716-97656796 30 3.41e-04 GGAATTTGCA CTTATCAA AACATAAAGC chr6:27536139-27536219 17 3.41e-04 cagcggaagg cttatcaa ggactcagaa chr16:20746926-20747006 8 3.41e-04 acctctg gttatcag atatgatgtc chr6:116575346-116575426 7 3.41e-04 ACTACG CTTATCAA TCCATCGTAT chr8:20809671-20809751 40 3.97e-04 CCTTTAACGT GTTATCTT TCCAAGCAGA chr1:32338609-32338689 18 3.97e-04 taagtgagat attatctc aaaaaaaaaa chr6:130160765-130160845 16 3.97e-04 aggaagtcaa attatctc tgtttgcaga chr17:47372127-47372207 18 4.39e-04 GCCTCAATTT GTTATCTA TATAATGCTT chr11:34486295-34486375 3 4.39e-04 CT CCTATCTG CGTCAGAGCT chr13:60035683-60035763 37 4.39e-04 attgtattat gttatcta tttgcacatc chr2:45666152-45666232 26 4.66e-04 tggttaactt tttatcag aaacaacaga chr18:34004832-34004912 36 5.26e-04 ggccatctca gttatcac atcggagcca chr8:106581406-106581486 38 5.26e-04 ttatctattt tttatctt tctatccttc chr14:101222172-10122225 19 5.26e-04 ttacagctaa tttatctt cagaaacaat chr15:79229637-79229717 55 5.26e-04 GTTGTGGGCG TTTATCTT CCTCCAGTTG chr1:20525598-20525678 62 5.90e-04 GATAGTCCTT TTTATCTA CAATAAACAG chr1:100905790-100905870 58 5.90e-04 GCTTAGCTTC ATTATCAG GCTTGATCTT chr6:134294353-134294433 55 5.90e-04 AAATCGGTCT ATTATCAG TCCTCCCCTG chr15:48883015-48883095 38 5.90e-04 TCCCCTATAC TTTATCTA CTGATAGCCA chr5:139990844-139990924 72 6.45e-04 ttttagcttc cctatctc a chr16:86965097-86965177 57 6.45e-04 ATTGCCAGAA ATTATCTT GATTTCATGG chr2:48679417-48679497 69 6.45e-04 cattatgtcc attatctt attt chr1:206845508-206845588 63 6.45e-04 TCCCTCCACT CCTATCTC ATTCTCTTGA chr10:111841884-11184196 9 6.45e-04 TTCAATGT ATTATCTT GCTGAGACAA chr3:38369300-38369380 52 6.81e-04 caatagtgat attatcta taggagcagt chr19:10830341-10830421 58 7.63e-04 TGTTATTGTT GTTATCAT TGTCAAGGGA chr7:106364071-106364151 29 8.03e-04 CAATCATTCT CCTATCAG CATGGTGTTG chr9:99814235-99814315 16 8.25e-04 ttttagcttt cctatctt agtgcccctg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:70446871-70446951 2.1e-05 1_[+2]_71 chr5:175624372-175624452 2.1e-05 8_[+2]_64 chr11:114018837-11401891 2.1e-05 58_[+2]_14 chr15:55574605-55574685 2.1e-05 29_[+2]_43 chr7:139974939-139975019 2.1e-05 50_[+2]_22 chr6:26502599-26502679 2.1e-05 37_[+2]_35 chrX:55147362-55147442 2.1e-05 70_[+2]_2 chr4:129482506-129482586 2.1e-05 40_[+2]_32 chr7:120689670-120689750 2.1e-05 33_[+2]_39 chr20:51797721-51797801 2.1e-05 69_[+2]_3 chr10:66627462-66627542 2.1e-05 58_[+2]_14 chr4:8453332-8453412 2.1e-05 39_[+2]_33 chr2:61482851-61482931 2.1e-05 52_[+2]_20 chr2:18739897-18739977 2.1e-05 47_[+2]_25 chr11:91638673-91638753 4.3e-05 13_[+2]_59 chr12:77015537-77015617 4.3e-05 38_[+2]_34 chr4:127656661-127656741 4.3e-05 22_[+2]_50 chr1:66153650-66153730 4.3e-05 34_[+2]_38 chr2:178545111-178545191 4.3e-05 5_[+2]_67 chr15:40398741-40398821 4.3e-05 38_[+2]_34 chr1:100107795-100107875 4.3e-05 49_[+2]_23 chr10:35703413-35703493 6.2e-05 45_[+2]_27 chr6:10854343-10854423 6.2e-05 47_[+2]_25 chr17:62101723-62101803 6.2e-05 4_[+2]_68 chr22:39848838-39848918 6.2e-05 44_[+2]_28 chr11:16215777-16215857 6.2e-05 42_[+2]_30 chr4:159841836-159841916 6.2e-05 33_[+2]_39 chr8:53601113-53601193 6.2e-05 47_[+2]_25 chr14:75087466-75087546 6.2e-05 65_[+2]_7 chr10:73740170-73740250 9.2e-05 57_[+2]_15 chr1:27048424-27048504 9.2e-05 37_[+2]_35 chr1:169278483-169278563 9.2e-05 38_[+2]_34 chr16:81254170-81254250 9.2e-05 71_[+2]_1 chr19:10727867-10727947 9.2e-05 40_[+2]_32 chr11:119997464-11999754 9.2e-05 56_[+2]_16 chr3:129539560-129539640 9.2e-05 8_[+2]_64 chr1:32593506-32593586 0.00014 53_[+2]_19 chr7:18217990-18218070 0.00014 35_[+2]_37 chr10:32348560-32348640 0.00014 29_[+2]_43 chr6:168091324-168091404 0.00014 68_[+2]_4 chr18:44011934-44012014 0.00014 40_[+2]_32 chr5:87547077-87547157 0.00014 38_[+2]_34 chr2:238848996-238849076 0.00014 39_[+2]_33 chr2:85695988-85696068 0.00014 52_[+2]_20 chr7:73208031-73208111 0.00016 68_[+2]_4 chr10:102118975-10211905 0.00016 16_[+2]_56 chr7:131280597-131280677 0.00019 33_[+2]_39 chr16:10451255-10451335 0.00019 44_[+2]_28 chr12:128801830-12880191 0.00019 46_[+2]_26 chr9:112956727-112956807 0.00019 37_[+2]_35 chr8:73019646-73019726 0.00021 69_[+2]_3 chr2:43406327-43406407 0.00021 19_[+2]_53 chr6:11393336-11393416 0.00021 34_[+2]_38 chr15:75432690-75432770 0.00021 65_[+2]_7 chr12:93396474-93396554 0.00021 32_[+2]_40 chr5:57309873-57309953 0.00024 7_[+2]_65 chr11:59961710-59961790 0.00024 8_[+2]_64 chr17:65370652-65370732 0.00029 8_[+2]_64 chr3:32115915-32115995 0.00029 1_[+2]_71 chr7:64375053-64375133 0.00029 8_[+2]_64 chr2:219226282-219226362 0.00029 37_[+2]_35 chr1:154589556-154589636 0.00034 24_[+2]_48 chr8:97656716-97656796 0.00034 29_[+2]_43 chr6:27536139-27536219 0.00034 16_[+2]_56 chr16:20746926-20747006 0.00034 7_[+2]_65 chr6:116575346-116575426 0.00034 6_[+2]_66 chr8:20809671-20809751 0.0004 39_[+2]_33 chr1:32338609-32338689 0.0004 17_[+2]_55 chr6:130160765-130160845 0.0004 15_[+2]_57 chr17:47372127-47372207 0.00044 17_[+2]_55 chr11:34486295-34486375 0.00044 2_[+2]_70 chr13:60035683-60035763 0.00044 36_[+2]_36 chr2:45666152-45666232 0.00047 25_[+2]_47 chr18:34004832-34004912 0.00053 35_[+2]_37 chr8:106581406-106581486 0.00053 37_[+2]_35 chr14:101222172-10122225 0.00053 18_[+2]_54 chr15:79229637-79229717 0.00053 54_[+2]_18 chr1:20525598-20525678 0.00059 61_[+2]_11 chr1:100905790-100905870 0.00059 57_[+2]_15 chr6:134294353-134294433 0.00059 54_[+2]_18 chr15:48883015-48883095 0.00059 37_[+2]_35 chr5:139990844-139990924 0.00064 71_[+2]_1 chr16:86965097-86965177 0.00064 56_[+2]_16 chr2:48679417-48679497 0.00064 68_[+2]_4 chr1:206845508-206845588 0.00064 62_[+2]_10 chr10:111841884-11184196 0.00064 8_[+2]_64 chr3:38369300-38369380 0.00068 51_[+2]_21 chr19:10830341-10830421 0.00076 57_[+2]_15 chr7:106364071-106364151 0.0008 28_[+2]_44 chr9:99814235-99814315 0.00083 15_[+2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCTS width=8 seqs=90 chr12:70446871-70446951 ( 2) CTTATCTG 1 chr5:175624372-175624452 ( 9) CTTATCTG 1 chr11:114018837-11401891 ( 59) CTTATCTG 1 chr15:55574605-55574685 ( 30) CTTATCTG 1 chr7:139974939-139975019 ( 51) CTTATCTG 1 chr6:26502599-26502679 ( 38) CTTATCTG 1 chrX:55147362-55147442 ( 71) CTTATCTG 1 chr4:129482506-129482586 ( 41) CTTATCTG 1 chr7:120689670-120689750 ( 34) CTTATCTG 1 chr20:51797721-51797801 ( 70) CTTATCTG 1 chr10:66627462-66627542 ( 59) CTTATCTG 1 chr4:8453332-8453412 ( 40) CTTATCTG 1 chr2:61482851-61482931 ( 53) CTTATCTG 1 chr2:18739897-18739977 ( 48) CTTATCTG 1 chr11:91638673-91638753 ( 14) CTTATCTC 1 chr12:77015537-77015617 ( 39) CTTATCTC 1 chr4:127656661-127656741 ( 23) CTTATCTC 1 chr1:66153650-66153730 ( 35) CTTATCTC 1 chr2:178545111-178545191 ( 6) CTTATCTC 1 chr15:40398741-40398821 ( 39) CTTATCTC 1 chr1:100107795-100107875 ( 50) CTTATCTC 1 chr10:35703413-35703493 ( 46) CTTATCAG 1 chr6:10854343-10854423 ( 48) CTTATCAG 1 chr17:62101723-62101803 ( 5) CTTATCAG 1 chr22:39848838-39848918 ( 45) CTTATCAG 1 chr11:16215777-16215857 ( 43) CTTATCAG 1 chr4:159841836-159841916 ( 34) CTTATCAG 1 chr8:53601113-53601193 ( 48) CTTATCAG 1 chr14:75087466-75087546 ( 66) CTTATCAG 1 chr10:73740170-73740250 ( 58) CTTATCTT 1 chr1:27048424-27048504 ( 38) CTTATCTT 1 chr1:169278483-169278563 ( 39) CTTATCTT 1 chr16:81254170-81254250 ( 72) CTTATCTT 1 chr19:10727867-10727947 ( 41) CTTATCTT 1 chr11:119997464-11999754 ( 57) CTTATCTT 1 chr3:129539560-129539640 ( 9) CTTATCTT 1 chr1:32593506-32593586 ( 54) GTTATCTG 1 chr7:18217990-18218070 ( 36) CTTATCTA 1 chr10:32348560-32348640 ( 30) CTTATCTA 1 chr6:168091324-168091404 ( 69) CTTATCTA 1 chr18:44011934-44012014 ( 41) GTTATCTG 1 chr5:87547077-87547157 ( 39) GTTATCTG 1 chr2:238848996-238849076 ( 40) CTTATCTA 1 chr2:85695988-85696068 ( 53) CTTATCTA 1 chr7:73208031-73208111 ( 69) CTTATCAC 1 chr10:102118975-10211905 ( 17) CTTATCAC 1 chr7:131280597-131280677 ( 34) TTTATCTG 1 chr16:10451255-10451335 ( 45) TTTATCTG 1 chr12:128801830-12880191 ( 47) TTTATCTG 1 chr9:112956727-112956807 ( 38) TTTATCTG 1 chr8:73019646-73019726 ( 70) GTTATCTC 1 chr2:43406327-43406407 ( 20) GTTATCTC 1 chr6:11393336-11393416 ( 35) GTTATCTC 1 chr15:75432690-75432770 ( 66) GTTATCTC 1 chr12:93396474-93396554 ( 33) GTTATCTC 1 chr5:57309873-57309953 ( 8) ATTATCTG 1 chr11:59961710-59961790 ( 9) ATTATCTG 1 chr17:65370652-65370732 ( 9) CTTATCAT 1 chr3:32115915-32115995 ( 2) TTTATCTC 1 chr7:64375053-64375133 ( 9) TTTATCTC 1 chr2:219226282-219226362 ( 38) TTTATCTC 1 chr1:154589556-154589636 ( 25) CTTATCAA 1 chr8:97656716-97656796 ( 30) CTTATCAA 1 chr6:27536139-27536219 ( 17) CTTATCAA 1 chr16:20746926-20747006 ( 8) GTTATCAG 1 chr6:116575346-116575426 ( 7) CTTATCAA 1 chr8:20809671-20809751 ( 40) GTTATCTT 1 chr1:32338609-32338689 ( 18) ATTATCTC 1 chr6:130160765-130160845 ( 16) ATTATCTC 1 chr17:47372127-47372207 ( 18) GTTATCTA 1 chr11:34486295-34486375 ( 3) CCTATCTG 1 chr13:60035683-60035763 ( 37) GTTATCTA 1 chr2:45666152-45666232 ( 26) TTTATCAG 1 chr18:34004832-34004912 ( 36) GTTATCAC 1 chr8:106581406-106581486 ( 38) TTTATCTT 1 chr14:101222172-10122225 ( 19) TTTATCTT 1 chr15:79229637-79229717 ( 55) TTTATCTT 1 chr1:20525598-20525678 ( 62) TTTATCTA 1 chr1:100905790-100905870 ( 58) ATTATCAG 1 chr6:134294353-134294433 ( 55) ATTATCAG 1 chr15:48883015-48883095 ( 38) TTTATCTA 1 chr5:139990844-139990924 ( 72) CCTATCTC 1 chr16:86965097-86965177 ( 57) ATTATCTT 1 chr2:48679417-48679497 ( 69) ATTATCTT 1 chr1:206845508-206845588 ( 63) CCTATCTC 1 chr10:111841884-11184196 ( 9) ATTATCTT 1 chr3:38369300-38369380 ( 52) ATTATCTA 1 chr19:10830341-10830421 ( 58) GTTATCAT 1 chr7:106364071-106364151 ( 29) CCTATCAG 1 chr9:99814235-99814315 ( 16) CCTATCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.20831 E= 1.5e-032 -134 144 -42 -103 -1314 -196 -1314 168 -1314 -1314 -1314 176 183 -1314 -1314 -1314 -1314 -1314 -1314 176 -1314 221 -1314 -1314 -20 -1314 -1314 136 -85 17 98 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.5e-032 0.111111 0.588889 0.155556 0.144444 0.000000 0.055556 0.000000 0.944444 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.244444 0.000000 0.000000 0.755556 0.155556 0.244444 0.411111 0.188889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTS MEME-2 regular expression -------------------------------------------------------------------------------- CTTATC[TA][GC] -------------------------------------------------------------------------------- Time 8.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CYWTTGTY MEME-3 width = 8 sites = 106 llr = 750 E-value = 2.3e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYWTTGTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::6::::: pos.-specific C 66:1:::3 probability G 1::::a:1 matrix T 3349a:a6 bits 2.3 * 2.0 * 1.8 *** 1.6 *** Relative 1.4 **** Entropy 1.1 **** (10.2 bits) 0.9 ** **** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCATTGTT consensus TTT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYWTTGTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:37951651-37951731 42 2.08e-05 aaagataacc ccattgtt cagcaacacg chr2:232573097-232573177 15 2.08e-05 GCACGCTTGT CCATTGTT CGGAATCGAG chr2:201270780-201270860 45 2.08e-05 tgaatgccac ccattgtt ctagaccctg chr20:2099610-2099690 30 2.08e-05 gttaagcagc ccattgtt aagcgaccca chr11:123992997-12399307 57 2.08e-05 CACCCCCACA CCATTGTT TGGATGATGA chr15:79229637-79229717 40 2.08e-05 TGTGTGGTTC CCATTGTT GTGGGCGTTT chr6:39004994-39005074 38 2.08e-05 CCTTTCCTTT CCATTGTT CCTCTTCTAT chr1:40714246-40714326 23 2.08e-05 TCTTACTATG CCATTGTT CTGTAACTGA chr6:74290172-74290252 25 2.08e-05 GTGTGACTTT CCATTGTT CGCGAGGCCC chr1:114201777-114201857 24 2.08e-05 AATGGGCAGT CCATTGTT GAACTGTCTC chr1:161464327-161464407 67 3.62e-05 GCCAATTTAG CCATTGTC TTTTTG chr2:218227600-218227680 48 3.62e-05 CTTCCGCCTT CCATTGTC CCGTGATGCT chr1:206845508-206845588 18 3.62e-05 GACTGTGTCA CCATTGTC CTCAAGATAA chr7:106317101-106317181 51 3.62e-05 ttagaaaacc ccattgtc tcagcccaaa chr6:130160765-130160845 60 3.62e-05 ttagaaaacc ccattgtc tcagcccaaa chr10:102118975-10211905 30 5.81e-05 ATCACCTCAC CCTTTGTT CTCCTCCAGC chr2:43406327-43406407 39 5.81e-05 ACTCGCATCC CCTTTGTT TGGGGCGGCT chrX:15965986-15966066 18 5.81e-05 TAAGCCTTCC CCTTTGTT TGTGAAGAGG chr2:27975714-27975794 10 5.81e-05 GATAACATC CCTTTGTT CTCCCAGTGA chr17:47372127-47372207 44 5.81e-05 TTAAATGCAG CCTTTGTT GTCTTTAACA chr16:20746926-20747006 43 5.81e-05 tatatattgg cctttgtt ctggcaggct chr1:91187135-91187215 62 1.02e-04 GAGGGAGCTG CTATTGTT TCTTTCTATA chr15:95388496-95388576 31 1.02e-04 CTCCTGGAGC CTATTGTT TGCCGGGTGC chr2:55283331-55283411 28 1.02e-04 gtgaatcatc cctttgtc cagtgatcac chr6:10854343-10854423 21 1.02e-04 ctgcttttgc cctttgtc tggtgatctt chr11:114018837-11401891 16 1.02e-04 TTAGTGTGCC CCTTTGTC ATTTCTGACA chrX:135213343-135213423 51 1.02e-04 atgaatcatc cctttgtc caggatgttc chr3:177149792-177149872 46 1.02e-04 AGGCTGATTT CTATTGTT TGCACTGCAC chr20:48585539-48585619 58 1.02e-04 cttcatgggg ctattgtt cctggaaagc chr12:11802097-11802177 29 1.02e-04 AGAACAAAGG CTATTGTT TTATTTCCTC chr2:61482851-61482931 42 1.02e-04 atgaatcatc cctttgtc cagcttatct chr6:116575346-116575426 26 1.02e-04 CCATCGTATT CCTTTGTC TTCTTGTCAC chr5:41883463-41883543 28 1.02e-04 tgaccaatta ctattgtt gagacagagt chr19:21505945-21506025 12 1.52e-04 ataaaattct tcattgtt tgtgttctcc chr3:126627674-126627754 16 1.52e-04 ggaggttctg tcattgtt gtcattttac chr3:150167065-150167145 56 1.52e-04 AACATGTTTT TCATTGTT CTTCAAAATG chr12:77015537-77015617 61 1.52e-04 TCTAAATTGT TCATTGTT TGAAGTGAGG chr6:22026007-22026087 55 1.52e-04 GAGGTGGAAG CTATTGTC CTGCTCTCCA chr11:47299323-47299403 53 1.52e-04 cttctcagaa ctattgtc ctgcacttca chr7:116660226-116660306 41 1.52e-04 ATAAGCCCTG CTATTGTC TTACTGCTAC chrX:138295640-138295720 27 1.52e-04 gaagcagaag tcattgtt ctcaggaggc chr7:64375053-64375133 28 1.52e-04 GTGGAGTAGC TCATTGTT CCTGAATCTT chr11:110188328-11018840 32 1.52e-04 TAATGGCCCT TCATTGTT CTGTGTGTTA chr11:12864633-12864713 52 1.52e-04 CTCTATTGTC TCATTGTT GGATTTGAGC chr5:96050690-96050770 31 1.52e-04 TCAGCTGTGA CTATTGTC ACAGTTGCTA chr2:178545111-178545191 55 1.52e-04 TCCGCAATGC CTATTGTC TCTAAAGAAA chr18:9960379-9960459 12 1.52e-04 AAATTTGTGT TCATTGTT ATAACATTTG chr1:109942086-109942166 47 1.52e-04 GATGAATGGT CTATTGTC TTACTGTCTG chr19:10830341-10830421 44 1.52e-04 GTCATTATTG TCATTGTT ATTGTTGTTA chr12:98902930-98903010 70 1.81e-04 tctgattgcc cttttgtt tcc chr1:167799267-167799347 14 1.81e-04 gttgcctttc cttttgtt ccttagcaga chr11:118586722-11858680 6 1.81e-04 ctttc cttttgtt tctaaactga chr4:186240018-186240098 26 1.81e-04 gctgtctttc cttttgtt cctcagcaga chr2:238848996-238849076 63 1.81e-04 gcaggctgtt cttttgtt tgaaagaatt chr19:10727867-10727947 52 2.22e-04 TTATCTTGCA GCATTGTT GCAAAGATAT chr6:32164349-32164429 49 2.22e-04 GGACAATGGG GCATTGTT CTGGGGTCGG chr4:159731084-159731164 33 2.22e-04 AAACTTGAGT GCATTGTT CCCTGGTGAG chr15:40398741-40398821 20 2.22e-04 acatacaGAG TCATTGTC CCAAGGAAAT chr18:47250278-47250358 30 2.22e-04 GGACAATTGA GCATTGTT CTTTATCGGT chr11:4017338-4017418 38 2.74e-04 gattcagatc tctttgtt ttatagcctg chr6:26502599-26502679 53 2.74e-04 ctgccttatc tctttgtt ttcccctgat chr6:27536139-27536219 44 2.74e-04 ataatgcaac cttttgtc tcttaccgac chr1:15587219-15587299 54 2.74e-04 cagagaaagt tctttgtt tttaagggct chr12:102799905-10279998 52 2.74e-04 ACATGTGACT TCTTTGTT GCAGACAATG chr4:159841836-159841916 71 2.74e-04 tgccttgtga tctttgtt gg chr1:100107795-100107875 19 2.74e-04 GTttactatt cttttgtc ttctaattgt chr8:53601113-53601193 71 2.74e-04 ctgcttttgt cttttgtc ct chr1:41616789-41616869 13 2.89e-04 TACCATCTGT GCATTGTC TGGGTTACTT chr2:24037976-24038056 64 2.89e-04 ctctatctca gcattgtc agtatggga chr18:34004832-34004912 51 3.85e-04 cacatcggag ccattgtg gtacagcagt chr7:66004998-66005078 34 3.85e-04 tctattcttg tctttgtc ccctgcctgt chrX:55147362-55147442 60 3.85e-04 agtctgtgtt tctttgtc ctgcttatct chr9:124049388-124049468 43 3.85e-04 ATCAGGGAAA GCTTTGTT TGGCGATTGT chr15:95790448-95790528 28 3.85e-04 AAGTGTTTAC TTATTGTT CAGTCAGCCA chr15:75432690-75432770 54 3.85e-04 GACTTTGGTT TCTTTGTC TTCTGTTATC chr9:99814235-99814315 61 4.00e-04 taatcaagac ccactgtt ttactggggc chr1:100905790-100905870 36 4.71e-04 CTGTGACATT GCTTTGTC ACATGCTTAG chr18:44011934-44012014 60 4.71e-04 ccttgtctgt ttattgtc tctattcctt chr2:62390461-62390541 42 4.71e-04 AGAGCCATCT GTATTGTT TTCTAGAAGG chr2:18739897-18739977 71 4.71e-04 tgactctgcc gtattgtt ta chr6:160405311-160405391 22 4.91e-04 gatgctgtag ccattgta atgtcgtagc chr13:60035683-60035763 25 4.91e-04 tgtcctcatt ccattgta ttatgttatc chr8:73019646-73019726 37 5.58e-04 TACTCCTCTG TTTTTGTT ACCATAAAGG chr15:55574605-55574685 72 5.58e-04 AGGGTGAGGT TTTTTGTT A chr18:60517897-60517977 5 5.58e-04 TATT TTTTTGTT GTTACTGAGA chr6:74132374-74132454 64 5.58e-04 AATCTCCCTA CCACTGTC ACCATACAG chr3:47501200-47501280 50 5.78e-04 agctgtgcac gtattgtc ttgataaaca chr9:99871601-99871681 62 5.94e-04 CCCTCTCCTT CCTCTGTT CTGCTCCTGC chr17:65370652-65370732 37 6.72e-04 TAACTTTACT GTTTTGTT CCTCTTTTTG chr6:134294353-134294433 32 6.72e-04 ATGTGGGTTC CTATTGTG TTTGCAAATC chr12:110708393-11070847 10 6.72e-04 TTTTTTTTT CTATTGTG GGACATCAAG chr1:219215353-219215433 9 6.93e-04 tgaaactg cctttgta agactaatga chr5:139570241-139570321 39 7.67e-04 TCTGCCCTTC TCATTGTG TGGTTGAATG chr10:111836825-11183690 68 7.94e-04 AATGGATTGT CTATTGTA ATACT chr7:131280597-131280677 45 8.51e-04 ttatctgtag ctactgtc tgcttaggaa chr16:79985446-79985526 54 8.51e-04 AAGTTTTGAC CTTTTGTG GCAGAACTCG chr12:45586313-45586393 50 8.51e-04 GCAAGATAAG TCACTGTT CTTCAGCGAG chr16:53899533-53899613 59 8.51e-04 gtagttcaag tcactgtt aactcctgca chr2:48679417-48679497 44 8.80e-04 tgcataccag gcattgtg ctaagtccat chr11:34486295-34486375 19 9.55e-04 TGCGTCAGAG CTTCTGTT TTATCATGGT chr22:29760264-29760344 10 9.55e-04 GCATGAAAT CAATTGTT CTGAAGAACT chrX:9484294-9484374 15 1.06e-03 GGTGTCATCT CTTTTGTA TTTTTCTCTT chr14:50437423-50437503 65 1.14e-03 GCTGACTGTG CAATTGTC TGAGCTGC chr7:16532429-16532509 51 1.21e-03 atcttttctt cctgtgtt accaaccact chr10:114220829-11422090 39 1.21e-03 atagcagttg cctgtgtt tcaggctggt chr4:69730277-69730357 14 1.28e-03 AAGTCCAAAG CCCTTGTC TTCTGTGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYWTTGTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:37951651-37951731 2.1e-05 41_[+3]_31 chr2:232573097-232573177 2.1e-05 14_[+3]_58 chr2:201270780-201270860 2.1e-05 44_[+3]_28 chr20:2099610-2099690 2.1e-05 29_[+3]_43 chr11:123992997-12399307 2.1e-05 56_[+3]_16 chr15:79229637-79229717 2.1e-05 39_[+3]_33 chr6:39004994-39005074 2.1e-05 37_[+3]_35 chr1:40714246-40714326 2.1e-05 22_[+3]_50 chr6:74290172-74290252 2.1e-05 24_[+3]_48 chr1:114201777-114201857 2.1e-05 23_[+3]_49 chr1:161464327-161464407 3.6e-05 66_[+3]_6 chr2:218227600-218227680 3.6e-05 47_[+3]_25 chr1:206845508-206845588 3.6e-05 17_[+3]_55 chr7:106317101-106317181 3.6e-05 50_[+3]_22 chr6:130160765-130160845 3.6e-05 59_[+3]_13 chr10:102118975-10211905 5.8e-05 29_[+3]_43 chr2:43406327-43406407 5.8e-05 38_[+3]_34 chrX:15965986-15966066 5.8e-05 17_[+3]_55 chr2:27975714-27975794 5.8e-05 9_[+3]_63 chr17:47372127-47372207 5.8e-05 43_[+3]_29 chr16:20746926-20747006 5.8e-05 42_[+3]_30 chr1:91187135-91187215 0.0001 61_[+3]_11 chr15:95388496-95388576 0.0001 30_[+3]_42 chr2:55283331-55283411 0.0001 27_[+3]_45 chr6:10854343-10854423 0.0001 20_[+3]_52 chr11:114018837-11401891 0.0001 15_[+3]_57 chrX:135213343-135213423 0.0001 50_[+3]_22 chr3:177149792-177149872 0.0001 45_[+3]_27 chr20:48585539-48585619 0.0001 57_[+3]_15 chr12:11802097-11802177 0.0001 28_[+3]_44 chr2:61482851-61482931 0.0001 41_[+3]_31 chr6:116575346-116575426 0.0001 25_[+3]_47 chr5:41883463-41883543 0.0001 27_[+3]_45 chr19:21505945-21506025 0.00015 11_[+3]_61 chr3:126627674-126627754 0.00015 15_[+3]_57 chr3:150167065-150167145 0.00015 55_[+3]_17 chr12:77015537-77015617 0.00015 60_[+3]_12 chr6:22026007-22026087 0.00015 54_[+3]_18 chr11:47299323-47299403 0.00015 52_[+3]_20 chr7:116660226-116660306 0.00015 40_[+3]_32 chrX:138295640-138295720 0.00015 26_[+3]_46 chr7:64375053-64375133 0.00015 27_[+3]_45 chr11:110188328-11018840 0.00015 31_[+3]_41 chr11:12864633-12864713 0.00015 51_[+3]_21 chr5:96050690-96050770 0.00015 30_[+3]_42 chr2:178545111-178545191 0.00015 54_[+3]_18 chr18:9960379-9960459 0.00015 11_[+3]_61 chr1:109942086-109942166 0.00015 46_[+3]_26 chr19:10830341-10830421 0.00015 43_[+3]_29 chr12:98902930-98903010 0.00018 69_[+3]_3 chr1:167799267-167799347 0.00018 13_[+3]_59 chr11:118586722-11858680 0.00018 5_[+3]_67 chr4:186240018-186240098 0.00018 25_[+3]_47 chr2:238848996-238849076 0.00018 62_[+3]_10 chr19:10727867-10727947 0.00022 51_[+3]_21 chr6:32164349-32164429 0.00022 48_[+3]_24 chr4:159731084-159731164 0.00022 32_[+3]_40 chr15:40398741-40398821 0.00022 19_[+3]_53 chr18:47250278-47250358 0.00022 29_[+3]_43 chr11:4017338-4017418 0.00027 37_[+3]_35 chr6:26502599-26502679 0.00027 52_[+3]_20 chr6:27536139-27536219 0.00027 43_[+3]_29 chr1:15587219-15587299 0.00027 53_[+3]_19 chr12:102799905-10279998 0.00027 51_[+3]_21 chr4:159841836-159841916 0.00027 70_[+3]_2 chr1:100107795-100107875 0.00027 18_[+3]_54 chr8:53601113-53601193 0.00027 70_[+3]_2 chr1:41616789-41616869 0.00029 12_[+3]_60 chr2:24037976-24038056 0.00029 63_[+3]_9 chr18:34004832-34004912 0.00038 50_[+3]_22 chr7:66004998-66005078 0.00038 33_[+3]_39 chrX:55147362-55147442 0.00038 59_[+3]_13 chr9:124049388-124049468 0.00038 42_[+3]_30 chr15:95790448-95790528 0.00038 27_[+3]_45 chr15:75432690-75432770 0.00038 53_[+3]_19 chr9:99814235-99814315 0.0004 60_[+3]_12 chr1:100905790-100905870 0.00047 35_[+3]_37 chr18:44011934-44012014 0.00047 59_[+3]_13 chr2:62390461-62390541 0.00047 41_[+3]_31 chr2:18739897-18739977 0.00047 70_[+3]_2 chr6:160405311-160405391 0.00049 21_[+3]_51 chr13:60035683-60035763 0.00049 24_[+3]_48 chr8:73019646-73019726 0.00056 36_[+3]_36 chr15:55574605-55574685 0.00056 71_[+3]_1 chr18:60517897-60517977 0.00056 4_[+3]_68 chr6:74132374-74132454 0.00056 63_[+3]_9 chr3:47501200-47501280 0.00058 49_[+3]_23 chr9:99871601-99871681 0.00059 61_[+3]_11 chr17:65370652-65370732 0.00067 36_[+3]_36 chr6:134294353-134294433 0.00067 31_[+3]_41 chr12:110708393-11070847 0.00067 9_[+3]_63 chr1:219215353-219215433 0.00069 8_[+3]_64 chr5:139570241-139570321 0.00077 38_[+3]_34 chr10:111836825-11183690 0.00079 67_[+3]_5 chr7:131280597-131280677 0.00085 44_[+3]_28 chr16:79985446-79985526 0.00085 53_[+3]_19 chr12:45586313-45586393 0.00085 49_[+3]_23 chr16:53899533-53899613 0.00085 58_[+3]_14 chr2:48679417-48679497 0.00088 43_[+3]_29 chr11:34486295-34486375 0.00096 18_[+3]_54 chr22:29760264-29760344 0.00096 9_[+3]_63 chrX:9484294-9484374 0.0011 14_[+3]_58 chr14:50437423-50437503 0.0011 64_[+3]_8 chr7:16532429-16532509 0.0012 50_[+3]_22 chr10:114220829-11422090 0.0012 38_[+3]_34 chr4:69730277-69730357 0.0013 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYWTTGTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYWTTGTY width=8 seqs=106 chr6:37951651-37951731 ( 42) CCATTGTT 1 chr2:232573097-232573177 ( 15) CCATTGTT 1 chr2:201270780-201270860 ( 45) CCATTGTT 1 chr20:2099610-2099690 ( 30) CCATTGTT 1 chr11:123992997-12399307 ( 57) CCATTGTT 1 chr15:79229637-79229717 ( 40) CCATTGTT 1 chr6:39004994-39005074 ( 38) CCATTGTT 1 chr1:40714246-40714326 ( 23) CCATTGTT 1 chr6:74290172-74290252 ( 25) CCATTGTT 1 chr1:114201777-114201857 ( 24) CCATTGTT 1 chr1:161464327-161464407 ( 67) CCATTGTC 1 chr2:218227600-218227680 ( 48) CCATTGTC 1 chr1:206845508-206845588 ( 18) CCATTGTC 1 chr7:106317101-106317181 ( 51) CCATTGTC 1 chr6:130160765-130160845 ( 60) CCATTGTC 1 chr10:102118975-10211905 ( 30) CCTTTGTT 1 chr2:43406327-43406407 ( 39) CCTTTGTT 1 chrX:15965986-15966066 ( 18) CCTTTGTT 1 chr2:27975714-27975794 ( 10) CCTTTGTT 1 chr17:47372127-47372207 ( 44) CCTTTGTT 1 chr16:20746926-20747006 ( 43) CCTTTGTT 1 chr1:91187135-91187215 ( 62) CTATTGTT 1 chr15:95388496-95388576 ( 31) CTATTGTT 1 chr2:55283331-55283411 ( 28) CCTTTGTC 1 chr6:10854343-10854423 ( 21) CCTTTGTC 1 chr11:114018837-11401891 ( 16) CCTTTGTC 1 chrX:135213343-135213423 ( 51) CCTTTGTC 1 chr3:177149792-177149872 ( 46) CTATTGTT 1 chr20:48585539-48585619 ( 58) CTATTGTT 1 chr12:11802097-11802177 ( 29) CTATTGTT 1 chr2:61482851-61482931 ( 42) CCTTTGTC 1 chr6:116575346-116575426 ( 26) CCTTTGTC 1 chr5:41883463-41883543 ( 28) CTATTGTT 1 chr19:21505945-21506025 ( 12) TCATTGTT 1 chr3:126627674-126627754 ( 16) TCATTGTT 1 chr3:150167065-150167145 ( 56) TCATTGTT 1 chr12:77015537-77015617 ( 61) TCATTGTT 1 chr6:22026007-22026087 ( 55) CTATTGTC 1 chr11:47299323-47299403 ( 53) CTATTGTC 1 chr7:116660226-116660306 ( 41) CTATTGTC 1 chrX:138295640-138295720 ( 27) TCATTGTT 1 chr7:64375053-64375133 ( 28) TCATTGTT 1 chr11:110188328-11018840 ( 32) TCATTGTT 1 chr11:12864633-12864713 ( 52) TCATTGTT 1 chr5:96050690-96050770 ( 31) CTATTGTC 1 chr2:178545111-178545191 ( 55) CTATTGTC 1 chr18:9960379-9960459 ( 12) TCATTGTT 1 chr1:109942086-109942166 ( 47) CTATTGTC 1 chr19:10830341-10830421 ( 44) TCATTGTT 1 chr12:98902930-98903010 ( 70) CTTTTGTT 1 chr1:167799267-167799347 ( 14) CTTTTGTT 1 chr11:118586722-11858680 ( 6) CTTTTGTT 1 chr4:186240018-186240098 ( 26) CTTTTGTT 1 chr2:238848996-238849076 ( 63) CTTTTGTT 1 chr19:10727867-10727947 ( 52) GCATTGTT 1 chr6:32164349-32164429 ( 49) GCATTGTT 1 chr4:159731084-159731164 ( 33) GCATTGTT 1 chr15:40398741-40398821 ( 20) TCATTGTC 1 chr18:47250278-47250358 ( 30) GCATTGTT 1 chr11:4017338-4017418 ( 38) TCTTTGTT 1 chr6:26502599-26502679 ( 53) TCTTTGTT 1 chr6:27536139-27536219 ( 44) CTTTTGTC 1 chr1:15587219-15587299 ( 54) TCTTTGTT 1 chr12:102799905-10279998 ( 52) TCTTTGTT 1 chr4:159841836-159841916 ( 71) TCTTTGTT 1 chr1:100107795-100107875 ( 19) CTTTTGTC 1 chr8:53601113-53601193 ( 71) CTTTTGTC 1 chr1:41616789-41616869 ( 13) GCATTGTC 1 chr2:24037976-24038056 ( 64) GCATTGTC 1 chr18:34004832-34004912 ( 51) CCATTGTG 1 chr7:66004998-66005078 ( 34) TCTTTGTC 1 chrX:55147362-55147442 ( 60) TCTTTGTC 1 chr9:124049388-124049468 ( 43) GCTTTGTT 1 chr15:95790448-95790528 ( 28) TTATTGTT 1 chr15:75432690-75432770 ( 54) TCTTTGTC 1 chr9:99814235-99814315 ( 61) CCACTGTT 1 chr1:100905790-100905870 ( 36) GCTTTGTC 1 chr18:44011934-44012014 ( 60) TTATTGTC 1 chr2:62390461-62390541 ( 42) GTATTGTT 1 chr2:18739897-18739977 ( 71) GTATTGTT 1 chr6:160405311-160405391 ( 22) CCATTGTA 1 chr13:60035683-60035763 ( 25) CCATTGTA 1 chr8:73019646-73019726 ( 37) TTTTTGTT 1 chr15:55574605-55574685 ( 72) TTTTTGTT 1 chr18:60517897-60517977 ( 5) TTTTTGTT 1 chr6:74132374-74132454 ( 64) CCACTGTC 1 chr3:47501200-47501280 ( 50) GTATTGTC 1 chr9:99871601-99871681 ( 62) CCTCTGTT 1 chr17:65370652-65370732 ( 37) GTTTTGTT 1 chr6:134294353-134294433 ( 32) CTATTGTG 1 chr12:110708393-11070847 ( 10) CTATTGTG 1 chr1:219215353-219215433 ( 9) CCTTTGTA 1 chr5:139570241-139570321 ( 39) TCATTGTG 1 chr10:111836825-11183690 ( 68) CTATTGTA 1 chr7:131280597-131280677 ( 45) CTACTGTC 1 chr16:79985446-79985526 ( 54) CTTTTGTG 1 chr12:45586313-45586393 ( 50) TCACTGTT 1 chr16:53899533-53899613 ( 59) TCACTGTT 1 chr2:48679417-48679497 ( 44) GCATTGTG 1 chr11:34486295-34486375 ( 19) CTTCTGTT 1 chr22:29760264-29760344 ( 10) CAATTGTT 1 chrX:9484294-9484374 ( 15) CTTTTGTA 1 chr14:50437423-50437503 ( 65) CAATTGTC 1 chr7:16532429-16532509 ( 51) CCTGTGTT 1 chr10:114220829-11422090 ( 39) CCTGTGTT 1 chr4:69730277-69730357 ( 14) CCCTTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYWTTGTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.97196 E= 2.3e-033 -1337 152 -76 -21 -389 156 -1337 21 110 -452 -1337 39 -1337 -171 -346 164 -1337 -1337 -1337 176 -1337 -1337 227 -1337 -1337 -1337 -1337 176 -257 52 -188 99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYWTTGTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 2.3e-033 0.000000 0.622642 0.122642 0.254717 0.018868 0.641509 0.000000 0.339623 0.603774 0.009434 0.000000 0.386792 0.000000 0.066038 0.018868 0.915094 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.047170 0.311321 0.056604 0.584906 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYWTTGTY MEME-3 regular expression -------------------------------------------------------------------------------- [CT][CT][AT]TTGT[TC] -------------------------------------------------------------------------------- Time 11.56 secs. ******************************************************************************** ******************************************************************************** MOTIF SWGATAAV MEME-4 width = 8 sites = 61 llr = 469 E-value = 3.9e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif SWGATAAV MEME-4 Description -------------------------------------------------------------------------------- Simplified A 26:a:8a2 pos.-specific C 5::::::3 probability G 3:a::2:5 matrix T :4::a::: bits 2.3 * 2.0 * 1.8 *** * 1.6 *** * Relative 1.4 ***** Entropy 1.1 ***** (11.1 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GT C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAV MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:126627674-126627754 33 1.73e-05 tgtcatttta cagataag aagctgaaga chr7:139974939-139975019 39 1.73e-05 ctgcatttta cagataag aaaacttatc chr17:47372127-47372207 70 1.73e-05 CAGACATGTA CAGATAAG GGC chr16:65803847-65803927 49 1.73e-05 cctgcaggca cagataag ggTTTGACCA chr3:32115915-32115995 65 3.54e-05 cttcacgtta ctgataag ccctctat chr14:35122478-35122558 30 3.54e-05 ctttgcatta ctgataag ccctctatca chr6:119580365-119580445 53 3.54e-05 GCACAAGGAT CTGATAAG TCAAATGTCC chrX:15965986-15966066 61 3.54e-05 TGGACTCCTA CTGATAAG TGAGATGGGA chr3:47501200-47501280 21 3.54e-05 ttcagaacta ctgataag ggtctatgtt chr1:161464327-161464407 6 3.54e-05 AGGGC CTGATAAG TCCCCTTCAG chr7:110714943-110715023 52 3.54e-05 gtgcaagtga ctgataag aaccattcaa chr6:135612995-135613075 18 3.54e-05 ATATTctaga ctgataag gtgaataagg chr1:40714246-40714326 37 3.54e-05 TGTTCTGTAA CTGATAAG GAGGCATATG chr20:37321670-37321750 35 5.19e-05 CTGGCTCCCA GAGATAAG GAAACAATGG chr7:129353476-129353556 64 5.19e-05 caattgcagt gagataag ggtctactg chr6:138290159-138290239 67 5.19e-05 gcatcattta gagataag aaacca chr3:151595232-151595312 25 5.19e-05 gagcaaaata gagataag agtagcctgg chr10:3878067-3878147 52 5.19e-05 CAATGGGGCA GAGATAAG CTACTCTATT chr1:54875189-54875269 42 5.19e-05 GCCCAGTAGG GAGATAAG GAATGGATAC chr3:45615749-45615829 18 5.19e-05 cactggcctt gagataag caatactgaa chr21:36143939-36144019 8 7.00e-05 accgcaa cagataac ctggtaactg chr4:159585021-159585101 67 8.73e-05 tattcagtaa gtgataag gaaact chr1:25278964-25279044 43 1.06e-04 tgctcaacag ctgataac atcTGAACAC chr8:20809671-20809751 22 1.06e-04 GTGTTAGGGT CTGATAAC CCTTTAACGT chr11:14786832-14786912 62 1.06e-04 GTAATTGAAC CTGATAAC ATCTCCTGGT chr12:128801830-12880191 36 1.06e-04 GTAAACTCAG CTGATAAC ACGTTTATCT chr3:151392019-151392099 42 1.24e-04 aatggataat gagataac agggagagga chr1:32593506-32593586 40 1.24e-04 TTTGAGATTG GAGATAAC CATTTGGTTA chr18:60517897-60517977 52 1.24e-04 GTGTGGAAGG GAGATAAC TGTTAGAGTG chr18:9960379-9960459 49 1.24e-04 GTGATGGGGG GAGATAAC AGCTACAATA chr1:167799267-167799347 38 1.65e-04 cagacagcta cagataaa aagttaagta chr6:7899973-7900053 70 1.89e-04 CTGCTCCTCT CTGATAAA AAG chr4:124521281-124521361 63 1.89e-04 AATGTGCTGT CTGATAAA CAGACTGCAT chr12:1281023-1281103 30 1.89e-04 CTGGGCAGGG CTGATAAA AGCCAAAACA chr1:219215353-219215433 65 1.89e-04 agcctgaatt ctgataaa atgttggt chr8:124592160-124592240 32 2.12e-04 AACACTGGAA GAGATAAA GAACAATACA chr1:226190734-226190814 46 2.12e-04 GTGCAGAGCA GAGATAAA AAGTTGGCCT chr12:98902930-98903010 46 2.12e-04 ctgctcatat gagataaa tgcatatctg chr16:31255513-31255593 38 2.12e-04 CCAGTGATGT GAGATAAA ATCActcggt chr2:18739897-18739977 38 2.12e-04 ctgctcacct gagataaa tgcttatctg chr11:4017338-4017418 1 2.25e-04 . cagatgag gtcatttccc chr7:66004998-66005078 53 2.70e-04 cctgcctgtg aagataag ctgtgaattt chr1:146849746-146849826 48 2.70e-04 ctgtttctta aagataag cagagttagg chr12:45586313-45586393 42 2.70e-04 GATCCTCAGC AAGATAAG TCACTGTTCT chr9:67297631-67297711 22 2.70e-04 TCAGTGCACA GTGATAAA ATCTGGAACA chr1:41616789-41616869 59 2.84e-04 TGGATGACCT CTGATGAG CTCCTGAGAT chr11:57568203-57568283 58 3.20e-04 GAGCCAGAAA GAGATGAG CTCACAGATA chr7:106317101-106317181 21 3.33e-04 tctctgttta cagatgac acgattgttt chr6:130160765-130160845 30 3.33e-04 tctctgtttg cagatgac atgattgtat chr3:150167065-150167145 12 3.69e-04 TACACTGTAA AAGATAAC TCCTTCATGA chr6:37951651-37951731 33 3.69e-04 catttttcaa aagataac cccattgttc chr12:121551936-12155201 41 3.69e-04 ATTACAATGT GTGATGAG CTGTCTGCTC chr2:24037976-24038056 47 3.69e-04 atgtttaggg aagataac tctatctcag chr7:138838753-138838833 68 3.83e-04 ttgcatttcc ctgatgac taatg chr2:132426562-132426642 56 3.83e-04 tcaaacatgt ctgatgac ctctgctggg chr12:77022677-77022757 26 3.83e-04 gagagacatg ctgatgac agaaagaggc chr19:10830341-10830421 15 4.20e-04 TGGCTGCCAA ATGATAAC ATCCTCCTCC chr1:114201777-114201857 42 4.20e-04 GAACTGTCTC ATGATAAC ATTGTTCAGC chr12:46824247-46824327 56 4.81e-04 ATGGGTTGTT AAGATAAA ACAGGGTGGG chr16:81254170-81254250 44 4.81e-04 CTTCTCGGGA AAGATAAA GTTGCTATAT chr7:123138835-123138915 60 5.82e-04 cacaagggaa gtgatgaa atgtggtcAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAV MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:126627674-126627754 1.7e-05 32_[+4]_40 chr7:139974939-139975019 1.7e-05 38_[+4]_34 chr17:47372127-47372207 1.7e-05 69_[+4]_3 chr16:65803847-65803927 1.7e-05 48_[+4]_24 chr3:32115915-32115995 3.5e-05 64_[+4]_8 chr14:35122478-35122558 3.5e-05 29_[+4]_43 chr6:119580365-119580445 3.5e-05 52_[+4]_20 chrX:15965986-15966066 3.5e-05 60_[+4]_12 chr3:47501200-47501280 3.5e-05 20_[+4]_52 chr1:161464327-161464407 3.5e-05 5_[+4]_67 chr7:110714943-110715023 3.5e-05 51_[+4]_21 chr6:135612995-135613075 3.5e-05 17_[+4]_55 chr1:40714246-40714326 3.5e-05 36_[+4]_36 chr20:37321670-37321750 5.2e-05 34_[+4]_38 chr7:129353476-129353556 5.2e-05 63_[+4]_9 chr6:138290159-138290239 5.2e-05 66_[+4]_6 chr3:151595232-151595312 5.2e-05 24_[+4]_48 chr10:3878067-3878147 5.2e-05 51_[+4]_21 chr1:54875189-54875269 5.2e-05 41_[+4]_31 chr3:45615749-45615829 5.2e-05 17_[+4]_55 chr21:36143939-36144019 7e-05 7_[+4]_65 chr4:159585021-159585101 8.7e-05 66_[+4]_6 chr1:25278964-25279044 0.00011 42_[+4]_30 chr8:20809671-20809751 0.00011 21_[+4]_51 chr11:14786832-14786912 0.00011 61_[+4]_11 chr12:128801830-12880191 0.00011 35_[+4]_37 chr3:151392019-151392099 0.00012 41_[+4]_31 chr1:32593506-32593586 0.00012 39_[+4]_33 chr18:60517897-60517977 0.00012 51_[+4]_21 chr18:9960379-9960459 0.00012 48_[+4]_24 chr1:167799267-167799347 0.00016 37_[+4]_35 chr6:7899973-7900053 0.00019 69_[+4]_3 chr4:124521281-124521361 0.00019 62_[+4]_10 chr12:1281023-1281103 0.00019 29_[+4]_43 chr1:219215353-219215433 0.00019 64_[+4]_8 chr8:124592160-124592240 0.00021 31_[+4]_41 chr1:226190734-226190814 0.00021 45_[+4]_27 chr12:98902930-98903010 0.00021 45_[+4]_27 chr16:31255513-31255593 0.00021 37_[+4]_35 chr2:18739897-18739977 0.00021 37_[+4]_35 chr11:4017338-4017418 0.00022 [+4]_72 chr7:66004998-66005078 0.00027 52_[+4]_20 chr1:146849746-146849826 0.00027 47_[+4]_25 chr12:45586313-45586393 0.00027 41_[+4]_31 chr9:67297631-67297711 0.00027 21_[+4]_51 chr1:41616789-41616869 0.00028 58_[+4]_14 chr11:57568203-57568283 0.00032 57_[+4]_15 chr7:106317101-106317181 0.00033 20_[+4]_52 chr6:130160765-130160845 0.00033 29_[+4]_43 chr3:150167065-150167145 0.00037 11_[+4]_61 chr6:37951651-37951731 0.00037 32_[+4]_40 chr12:121551936-12155201 0.00037 40_[+4]_32 chr2:24037976-24038056 0.00037 46_[+4]_26 chr7:138838753-138838833 0.00038 67_[+4]_5 chr2:132426562-132426642 0.00038 55_[+4]_17 chr12:77022677-77022757 0.00038 25_[+4]_47 chr19:10830341-10830421 0.00042 14_[+4]_58 chr1:114201777-114201857 0.00042 41_[+4]_31 chr12:46824247-46824327 0.00048 55_[+4]_17 chr16:81254170-81254250 0.00048 43_[+4]_29 chr7:123138835-123138915 0.00058 59_[+4]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAV MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SWGATAAV width=8 seqs=61 chr3:126627674-126627754 ( 33) CAGATAAG 1 chr7:139974939-139975019 ( 39) CAGATAAG 1 chr17:47372127-47372207 ( 70) CAGATAAG 1 chr16:65803847-65803927 ( 49) CAGATAAG 1 chr3:32115915-32115995 ( 65) CTGATAAG 1 chr14:35122478-35122558 ( 30) CTGATAAG 1 chr6:119580365-119580445 ( 53) CTGATAAG 1 chrX:15965986-15966066 ( 61) CTGATAAG 1 chr3:47501200-47501280 ( 21) CTGATAAG 1 chr1:161464327-161464407 ( 6) CTGATAAG 1 chr7:110714943-110715023 ( 52) CTGATAAG 1 chr6:135612995-135613075 ( 18) CTGATAAG 1 chr1:40714246-40714326 ( 37) CTGATAAG 1 chr20:37321670-37321750 ( 35) GAGATAAG 1 chr7:129353476-129353556 ( 64) GAGATAAG 1 chr6:138290159-138290239 ( 67) GAGATAAG 1 chr3:151595232-151595312 ( 25) GAGATAAG 1 chr10:3878067-3878147 ( 52) GAGATAAG 1 chr1:54875189-54875269 ( 42) GAGATAAG 1 chr3:45615749-45615829 ( 18) GAGATAAG 1 chr21:36143939-36144019 ( 8) CAGATAAC 1 chr4:159585021-159585101 ( 67) GTGATAAG 1 chr1:25278964-25279044 ( 43) CTGATAAC 1 chr8:20809671-20809751 ( 22) CTGATAAC 1 chr11:14786832-14786912 ( 62) CTGATAAC 1 chr12:128801830-12880191 ( 36) CTGATAAC 1 chr3:151392019-151392099 ( 42) GAGATAAC 1 chr1:32593506-32593586 ( 40) GAGATAAC 1 chr18:60517897-60517977 ( 52) GAGATAAC 1 chr18:9960379-9960459 ( 49) GAGATAAC 1 chr1:167799267-167799347 ( 38) CAGATAAA 1 chr6:7899973-7900053 ( 70) CTGATAAA 1 chr4:124521281-124521361 ( 63) CTGATAAA 1 chr12:1281023-1281103 ( 30) CTGATAAA 1 chr1:219215353-219215433 ( 65) CTGATAAA 1 chr8:124592160-124592240 ( 32) GAGATAAA 1 chr1:226190734-226190814 ( 46) GAGATAAA 1 chr12:98902930-98903010 ( 46) GAGATAAA 1 chr16:31255513-31255593 ( 38) GAGATAAA 1 chr2:18739897-18739977 ( 38) GAGATAAA 1 chr11:4017338-4017418 ( 1) CAGATGAG 1 chr7:66004998-66005078 ( 53) AAGATAAG 1 chr1:146849746-146849826 ( 48) AAGATAAG 1 chr12:45586313-45586393 ( 42) AAGATAAG 1 chr9:67297631-67297711 ( 22) GTGATAAA 1 chr1:41616789-41616869 ( 59) CTGATGAG 1 chr11:57568203-57568283 ( 58) GAGATGAG 1 chr7:106317101-106317181 ( 21) CAGATGAC 1 chr6:130160765-130160845 ( 30) CAGATGAC 1 chr3:150167065-150167145 ( 12) AAGATAAC 1 chr6:37951651-37951731 ( 33) AAGATAAC 1 chr12:121551936-12155201 ( 41) GTGATGAG 1 chr2:24037976-24038056 ( 47) AAGATAAC 1 chr7:138838753-138838833 ( 68) CTGATGAC 1 chr2:132426562-132426642 ( 56) CTGATGAC 1 chr12:77022677-77022757 ( 26) CTGATGAC 1 chr19:10830341-10830421 ( 15) ATGATAAC 1 chr1:114201777-114201857 ( 42) ATGATAAC 1 chr12:46824247-46824327 ( 56) AAGATAAA 1 chr16:81254170-81254250 ( 44) AAGATAAA 1 chr7:123138835-123138915 ( 60) GTGATGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAV MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 3.9e-012 -78 118 73 -1257 99 -1257 -1257 59 -1257 -1257 227 -1257 183 -1257 -1257 -1257 -1257 -1257 -1257 176 157 -1257 -34 -1257 183 -1257 -1257 -1257 -29 52 114 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAV MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 3.9e-012 0.163934 0.491803 0.344262 0.000000 0.557377 0.000000 0.000000 0.442623 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.836066 0.000000 0.163934 0.000000 1.000000 0.000000 0.000000 0.000000 0.229508 0.311475 0.459016 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGATAAV MEME-4 regular expression -------------------------------------------------------------------------------- [CG][AT]GATAA[GCA] -------------------------------------------------------------------------------- Time 14.68 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGASTCA MEME-5 width = 8 sites = 17 llr = 158 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGASTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7::a2::a pos.-specific C 3:::5:a: probability G ::a:3::: matrix T :a:::a:: bits 2.3 * * 2.0 * * 1.8 *** *** 1.6 *** *** Relative 1.4 *** *** Entropy 1.1 **** *** (13.4 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGACTCA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:72149150-72149230 13 1.89e-05 tgaacaaata atgactca ggatttcccc chr15:55574605-55574685 55 1.89e-05 AAATGGGATG ATGACTCA GGGTGAGGTT chr11:7626858-7626938 10 1.89e-05 ACAATTGGA ATGACTCA CCTCAAGGTA chr2:132426562-132426642 41 1.89e-05 tgacaagtgt atgactca aacatgtctg chr15:95790448-95790528 48 1.89e-05 GTCAGCCAAG ATGACTCA GCTTCATAGT chr20:48317260-48317340 21 1.89e-05 ggacaaagga atgactca catcccaggc chr12:70446871-70446951 71 3.70e-05 cacaataccg atgagtca tt chr3:150167065-150167145 26 3.70e-05 TAACTCCTTC ATGAGTCA TTTTCATTTT chr12:45586313-45586393 22 3.70e-05 AAAACAATAG ATGAGTCA CTGATCCTCA chr6:119580365-119580445 17 5.16e-05 TTCTGAGTTG CTGACTCA TTTTGTAAAC chr1:15587219-15587299 20 5.16e-05 acctccccgt ctgactca tctctccaac chr18:47250278-47250358 59 5.16e-05 ATTTCTCCGT CTGACTCA CCTCCTCCCA chrX:122937447-122937527 67 6.56e-05 AGTGTCACGT CTGAGTCA TTAGTC chr6:74290172-74290252 64 6.56e-05 GCCGCCCGGG CTGAGTCA TTCTAAATT chrX:135213343-135213423 41 9.01e-05 ctcccaggac atgaatca tccctttgtc chr2:201270780-201270860 22 9.01e-05 acaaacattt atgaatca tctactgaat chr2:61482851-61482931 32 9.01e-05 tgcttaggat atgaatca tccctttgtc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:72149150-72149230 1.9e-05 12_[+5]_60 chr15:55574605-55574685 1.9e-05 54_[+5]_18 chr11:7626858-7626938 1.9e-05 9_[+5]_63 chr2:132426562-132426642 1.9e-05 40_[+5]_32 chr15:95790448-95790528 1.9e-05 47_[+5]_25 chr20:48317260-48317340 1.9e-05 20_[+5]_52 chr12:70446871-70446951 3.7e-05 70_[+5]_2 chr3:150167065-150167145 3.7e-05 25_[+5]_47 chr12:45586313-45586393 3.7e-05 21_[+5]_51 chr6:119580365-119580445 5.2e-05 16_[+5]_56 chr1:15587219-15587299 5.2e-05 19_[+5]_53 chr18:47250278-47250358 5.2e-05 58_[+5]_14 chrX:122937447-122937527 6.6e-05 66_[+5]_6 chr6:74290172-74290252 6.6e-05 63_[+5]_9 chrX:135213343-135213423 9e-05 40_[+5]_32 chr2:201270780-201270860 9e-05 21_[+5]_51 chr2:61482851-61482931 9e-05 31_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGASTCA width=8 seqs=17 chr7:72149150-72149230 ( 13) ATGACTCA 1 chr15:55574605-55574685 ( 55) ATGACTCA 1 chr11:7626858-7626938 ( 10) ATGACTCA 1 chr2:132426562-132426642 ( 41) ATGACTCA 1 chr15:95790448-95790528 ( 48) ATGACTCA 1 chr20:48317260-48317340 ( 21) ATGACTCA 1 chr12:70446871-70446951 ( 71) ATGAGTCA 1 chr3:150167065-150167145 ( 26) ATGAGTCA 1 chr12:45586313-45586393 ( 22) ATGAGTCA 1 chr6:119580365-119580445 ( 17) CTGACTCA 1 chr1:15587219-15587299 ( 20) CTGACTCA 1 chr18:47250278-47250358 ( 59) CTGACTCA 1 chrX:122937447-122937527 ( 67) CTGAGTCA 1 chr6:74290172-74290252 ( 64) CTGAGTCA 1 chrX:135213343-135213423 ( 41) ATGAATCA 1 chr2:201270780-201270860 ( 22) ATGAATCA 1 chr2:61482851-61482931 ( 32) ATGAATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 1.8e+003 133 44 -1073 -1073 -1073 -1073 -1073 176 -1073 -1073 227 -1073 183 -1073 -1073 -1073 -67 129 50 -1073 -1073 -1073 -1073 176 -1073 220 -1073 -1073 183 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.8e+003 0.705882 0.294118 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.529412 0.294118 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-5 regular expression -------------------------------------------------------------------------------- [AC]TGA[CG]TCA -------------------------------------------------------------------------------- Time 17.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:93396474-93396554 5.30e-03 14_[+1(4.65e-05)]_58 chr10:111841884-11184196 9.04e-04 34_[+1(6.98e-05)]_38 chr3:20371634-20371714 1.81e-01 80 chr14:75087466-75087546 5.57e-03 65_[+2(6.24e-05)]_7 chr1:114201777-114201857 1.12e-03 23_[+3(2.08e-05)]_49 chr15:75432690-75432770 9.47e-02 80 chr8:53601113-53601193 1.03e-02 47_[+2(6.24e-05)]_25 chr10:114220829-11422090 1.59e-02 24_[+1(6.98e-05)]_48 chr6:74290172-74290252 7.38e-03 24_[+3(2.08e-05)]_31_[+5(6.56e-05)]_\ 9 chr3:45615749-45615829 4.92e-03 17_[+4(5.19e-05)]_55 chr18:47250278-47250358 9.58e-04 58_[+5(5.16e-05)]_14 chr12:77022677-77022757 1.08e-01 80 chr10:74365000-74365080 2.84e-01 80 chr1:40714246-40714326 2.21e-04 22_[+3(2.08e-05)]_6_[+4(3.54e-05)]_\ 36 chr12:112851707-11285178 1.24e-01 80 chr1:219215353-219215433 5.44e-02 80 chr20:48317260-48317340 7.33e-03 20_[+5(1.89e-05)]_52 chr2:45666152-45666232 1.42e-02 80 chr10:111836825-11183690 2.34e-01 80 chr1:100107795-100107875 1.13e-02 49_[+2(4.26e-05)]_23 chr9:112956727-112956807 2.00e-02 80 chr9:67297631-67297711 3.46e-02 35_[+1(6.98e-05)]_37 chr15:48883015-48883095 2.52e-02 80 chr6:130160765-130160845 7.75e-04 59_[+3(3.62e-05)]_13 chr19:10830341-10830421 1.17e-02 80 chr3:129539560-129539640 9.04e-02 8_[+2(9.20e-05)]_64 chr1:109942086-109942166 4.00e-03 80 chr1:92193503-92193583 1.33e-02 43_[+1(6.98e-05)]_29 chr5:41883463-41883543 7.78e-02 80 chr11:59961710-59961790 5.51e-03 80 chr16:53899533-53899613 6.83e-02 80 chr5:149957835-149957915 5.67e-03 80 chr11:47025255-47025335 1.45e-01 40_[+1(6.98e-05)]_32 chr2:85695988-85696068 5.51e-03 13_[+1(1.73e-05)]_59 chr15:95790448-95790528 1.71e-04 47_[+5(1.89e-05)]_25 chr18:9960379-9960459 3.05e-03 80 chr6:116575346-116575426 1.02e-02 80 chr2:18739897-18739977 6.38e-05 47_[+2(2.08e-05)]_25 chr2:238848996-238849076 2.82e-02 80 chr4:159841836-159841916 2.97e-03 33_[+2(6.24e-05)]_39 chr7:123138835-123138915 1.08e-01 80 chr2:61482851-61482931 1.07e-04 31_[+5(9.01e-05)]_13_[+2(2.08e-05)]_\ 20 chr12:1281023-1281103 2.89e-02 80 chr5:87547077-87547157 4.10e-02 80 chr4:124521281-124521361 1.04e-02 80 chr15:40398741-40398821 9.97e-04 38_[+2(4.26e-05)]_34 chr6:76339702-76339782 4.71e-02 80 chr2:24037976-24038056 1.02e-02 80 chr22:29760264-29760344 3.81e-02 80 chr11:59315408-59315488 6.56e-01 80 chr2:62390461-62390541 1.33e-02 80 chr6:39004994-39005074 1.36e-01 37_[+3(2.08e-05)]_35 chr6:74132374-74132454 3.34e-01 80 chr5:71522950-71523030 1.08e-02 80 chr2:132426562-132426642 1.23e-04 7_[+1(4.65e-05)]_25_[+5(1.89e-05)]_\ 32 chr2:178545111-178545191 3.42e-03 5_[+2(4.26e-05)]_67 chr1:1711684-1711764 5.46e-01 80 chr5:139570241-139570321 1.48e-01 80 chr2:12992523-12992603 1.82e-01 80 chr14:103780134-10378021 3.67e-02 80 chr18:60517897-60517977 2.31e-03 24_[+1(8.32e-05)]_48 chr6:84797002-84797082 1.82e-02 12_[+1(4.65e-05)]_60 chr16:20746926-20747006 1.49e-03 42_[+3(5.81e-05)]_30 chr12:11802097-11802177 8.50e-03 20_[+1(4.65e-05)]_52 chr4:186240018-186240098 7.88e-02 80 chr3:186600747-186600827 1.38e-02 80 chr8:108299868-108299948 7.15e-02 80 chr15:79229637-79229717 3.04e-02 39_[+3(2.08e-05)]_33 chr6:90869909-90869989 1.34e-01 80 chr5:159066078-159066158 3.00e-02 34_[+1(1.73e-05)]_38 chr11:118586722-11858680 4.43e-02 80 chr1:54875189-54875269 7.35e-03 41_[+4(5.19e-05)]_14_[+1(6.98e-05)]_\ 9 chr4:8453332-8453412 3.52e-03 39_[+2(2.08e-05)]_33 chr6:11393336-11393416 9.64e-02 80 chr18:44011934-44012014 4.86e-02 80 chr5:96050690-96050770 2.87e-02 80 chr10:112243587-11224366 2.00e-01 80 chr15:58407177-58407257 2.43e-01 80 chr12:45586313-45586393 2.43e-05 13_[+1(6.98e-05)]_[+5(3.70e-05)]_51 chr1:41616789-41616869 4.07e-02 80 chr11:16215777-16215857 6.98e-03 42_[+2(6.24e-05)]_30 chr7:16532429-16532509 1.50e-01 80 chr11:119997464-11999754 1.13e-01 56_[+2(9.20e-05)]_16 chr11:12864633-12864713 1.37e-01 80 chr7:106317101-106317181 2.34e-03 50_[+3(3.62e-05)]_22 chr10:66627462-66627542 7.49e-02 58_[+2(2.08e-05)]_14 chr6:135612995-135613075 2.35e-02 17_[+4(3.54e-05)]_55 chr22:39848838-39848918 8.69e-04 33_[+1(4.65e-05)]_3_[+2(6.24e-05)]_\ 28 chr10:3878067-3878147 5.10e-03 39_[+1(4.65e-05)]_4_[+4(5.19e-05)]_\ 21 chr13:60035683-60035763 3.01e-02 80 chr1:66153650-66153730 1.05e-02 34_[+2(4.26e-05)]_38 chr6:168091324-168091404 6.19e-03 80 chr10:32348560-32348640 8.84e-03 80 chr20:48585539-48585619 6.28e-02 80 chr2:134890113-134890193 1.85e-01 80 chr9:99871601-99871681 1.34e-01 80 chr4:159731084-159731164 2.02e-02 80 chr11:110188328-11018840 7.27e-02 80 chr20:51797721-51797801 7.66e-02 69_[+2(2.08e-05)]_3 chr7:138838753-138838833 8.36e-02 80 chrX:122937447-122937527 3.69e-02 66_[+5(6.56e-05)]_6 chr7:18217990-18218070 1.74e-01 80 chr4:123724982-123725062 1.79e-01 80 chr1:206845508-206845588 1.68e-03 17_[+3(3.62e-05)]_55 chr22:29816199-29816279 1.55e-01 80 chr8:86940397-86940477 1.32e-01 80 chr11:123992997-12399307 5.56e-02 56_[+3(2.08e-05)]_16 chr7:129515949-129516029 7.38e-01 80 chr20:2099610-2099690 5.52e-02 29_[+3(2.08e-05)]_43 chr3:49256119-49256199 1.04e-01 80 chr9:99814235-99814315 7.84e-02 80 chr7:110714943-110715023 1.07e-02 51_[+4(3.54e-05)]_21 chr9:124049388-124049468 1.71e-01 80 chr21:36143939-36144019 2.40e-02 7_[+4(7.00e-05)]_65 chr3:38369300-38369380 1.48e-02 39_[+1(6.98e-05)]_33 chr12:128801830-12880191 7.10e-03 80 chr2:15698243-15698323 7.72e-02 80 chr9:259882-259962 8.94e-02 21_[+1(4.65e-05)]_51 chr1:167799267-167799347 8.29e-03 80 chr11:14786832-14786912 5.27e-03 80 chr2:219226282-219226362 1.09e-03 4_[+1(6.98e-05)]_68 chr7:64375053-64375133 3.58e-03 80 chr7:86562749-86562829 4.60e-01 80 chr12:110708393-11070847 9.49e-02 80 chrX:138295640-138295720 8.84e-02 80 chr3:177149792-177149872 1.24e-01 80 chr16:65803847-65803927 7.62e-03 48_[+4(1.73e-05)]_24 chr7:120689670-120689750 1.77e-03 33_[+2(2.08e-05)]_39 chr3:151595232-151595312 1.25e-01 24_[+4(5.19e-05)]_48 chr16:79985446-79985526 4.16e-01 80 chrX:9484294-9484374 2.58e-01 80 chr4:129482506-129482586 1.84e-02 40_[+2(2.08e-05)]_32 chr12:102799905-10279998 2.62e-02 80 chr1:32593506-32593586 2.29e-03 80 chr1:32338609-32338689 1.38e-02 68_[+1(6.98e-05)]_4 chr11:22814197-22814277 6.05e-02 57_[+1(6.98e-05)]_15 chr7:116660226-116660306 3.23e-01 80 chr11:7626858-7626938 3.86e-03 9_[+5(1.89e-05)]_63 chr11:47299323-47299403 1.87e-02 80 chr16:10451255-10451335 8.81e-03 80 chr6:138290159-138290239 3.91e-02 66_[+4(5.19e-05)]_6 chr8:125259833-125259913 2.42e-01 80 chr2:48679417-48679497 5.44e-02 80 chr4:127656661-127656741 1.71e-03 22_[+2(4.26e-05)]_50 chr2:218227600-218227680 1.56e-01 47_[+3(3.62e-05)]_25 chr16:31255513-31255593 2.08e-02 80 chr1:161464327-161464407 1.69e-03 5_[+4(3.54e-05)]_53_[+3(3.62e-05)]_\ 6 chr2:201270780-201270860 9.63e-04 21_[+5(9.01e-05)]_15_[+3(2.08e-05)]_\ 28 chr12:121551936-12155201 8.62e-03 80 chr6:32164349-32164429 8.81e-03 39_[+1(4.65e-05)]_33 chr1:15587219-15587299 3.04e-03 19_[+5(5.16e-05)]_53 chr3:47501200-47501280 1.21e-02 20_[+4(3.54e-05)]_52 chr8:56926589-56926669 7.82e-02 80 chr2:232573097-232573177 7.31e-02 14_[+3(2.08e-05)]_58 chr16:86965097-86965177 2.80e-03 22_[+1(1.73e-05)]_50 chr11:34486295-34486375 7.10e-04 50_[+1(1.73e-05)]_22 chrX:55147362-55147442 1.72e-03 70_[+2(2.08e-05)]_2 chr19:10727867-10727947 1.47e-02 40_[+2(9.20e-05)]_32 chr15:64722609-64722689 9.28e-02 80 chr17:47372127-47372207 1.06e-04 43_[+3(5.81e-05)]_18_[+4(1.73e-05)]_\ 3 chr7:27653863-27653943 2.57e-01 17_[+1(8.32e-05)]_55 chr12:46613807-46613887 8.19e-03 80 chr6:37951651-37951731 2.12e-04 41_[+3(2.08e-05)]_31 chr17:62101723-62101803 2.35e-02 4_[+2(6.24e-05)]_68 chr1:146849746-146849826 1.09e-01 80 chr2:170767075-170767155 1.46e-01 80 chr7:129353476-129353556 2.96e-02 63_[+4(5.19e-05)]_9 chr7:131280597-131280677 7.14e-03 80 chr6:27536139-27536219 4.29e-03 80 chr16:81254170-81254250 2.20e-02 71_[+2(9.20e-05)]_1 chr6:134294353-134294433 1.34e-01 80 chr2:27975714-27975794 3.04e-02 9_[+3(5.81e-05)]_63 chr14:101222172-10122225 4.56e-03 30_[+1(1.73e-05)]_42 chr12:98902930-98903010 4.17e-03 80 chr1:169278483-169278563 1.38e-01 38_[+2(9.20e-05)]_34 chr6:160405311-160405391 2.84e-02 80 chr6:26502599-26502679 5.94e-04 37_[+2(2.08e-05)]_1_[+2(4.26e-05)]_\ 26 chr5:180131518-180131598 1.15e-02 54_[+1(4.65e-05)]_18 chr3:151392019-151392099 1.33e-03 80 chr1:241859832-241859912 6.27e-02 [+1(4.65e-05)]_72 chr11:100679851-10067993 1.24e-02 80 chrX:15965986-15966066 1.55e-04 17_[+3(5.81e-05)]_35_[+4(3.54e-05)]_\ 12 chr1:100905790-100905870 9.94e-02 80 chr8:20809671-20809751 3.58e-02 80 chrX:135213343-135213423 3.35e-03 40_[+5(9.01e-05)]_32 chr11:4017338-4017418 6.60e-02 80 chr7:139974939-139975019 9.57e-04 38_[+4(1.73e-05)]_4_[+2(2.08e-05)]_\ 22 chr15:55574605-55574685 1.71e-06 29_[+2(2.08e-05)]_17_[+5(1.89e-05)]_\ 18 chr11:114018837-11401891 1.05e-03 58_[+2(2.08e-05)]_14 chr3:130568981-130569061 1.51e-01 80 chr6:85377471-85377551 5.29e-02 80 chr2:43406327-43406407 5.60e-03 38_[+3(5.81e-05)]_34 chr6:139766794-139766874 1.36e-01 80 chrX:153389512-153389592 1.17e-01 80 chr10:74560334-74560414 3.75e-03 80 chr6:119580365-119580445 7.54e-04 16_[+5(5.16e-05)]_28_[+4(3.54e-05)]_\ 20 chr10:102118975-10211905 2.59e-02 29_[+3(5.81e-05)]_43 chr5:139990844-139990924 5.53e-01 80 chr4:159585021-159585101 8.81e-03 47_[+1(8.32e-05)]_11_[+4(8.73e-05)]_\ 6 chr6:10854343-10854423 1.53e-02 47_[+2(6.24e-05)]_25 chr5:57309873-57309953 1.54e-03 68_[+1(4.65e-05)]_4 chr6:22026007-22026087 1.54e-01 80 chr5:175624372-175624452 5.86e-02 8_[+2(2.08e-05)]_64 chr12:46824247-46824327 9.45e-03 80 chr17:17921372-17921452 2.75e-01 80 chr14:50437423-50437503 5.02e-02 80 chr1:111423768-111423848 1.39e-01 80 chr1:25278964-25279044 8.32e-02 80 chr1:226190734-226190814 2.57e-01 80 chr14:35122478-35122558 1.48e-02 29_[+4(3.54e-05)]_43 chr6:7899973-7900053 7.12e-02 80 chr1:20525598-20525678 1.15e-01 80 chrX:47572273-47572353 5.83e-01 80 chr7:117581652-117581732 5.67e-02 80 chr12:77015537-77015617 4.36e-03 38_[+2(4.26e-05)]_34 chr11:57568203-57568283 7.65e-03 80 chr3:150167065-150167145 9.87e-04 25_[+5(3.70e-05)]_47 chr3:126627674-126627754 1.96e-03 32_[+4(1.73e-05)]_40 chr7:72149150-72149230 1.31e-02 12_[+5(1.89e-05)]_60 chr8:124592160-124592240 6.06e-02 80 chr3:32115915-32115995 8.40e-03 64_[+4(3.54e-05)]_8 chr7:106364071-106364151 5.29e-03 62_[+1(1.73e-05)]_10 chr8:97656716-97656796 1.45e-02 13_[+1(4.65e-05)]_59 chr1:27048424-27048504 7.52e-02 37_[+2(9.20e-05)]_35 chr8:59508615-59508695 2.88e-01 80 chr2:202085065-202085145 2.59e-01 80 chr1:142884944-142885024 9.47e-02 48_[+1(1.73e-05)]_24 chr19:21505945-21506025 1.67e-02 80 chr7:66004998-66005078 1.62e-02 80 chr8:106581406-106581486 1.16e-01 80 chr1:160919212-160919292 3.19e-01 80 chr8:73019646-73019726 1.33e-02 80 chr4:69730277-69730357 5.34e-01 80 chr10:73740170-73740250 1.43e-02 57_[+2(9.20e-05)]_15 chr17:65370652-65370732 3.90e-02 80 chr18:34004832-34004912 3.15e-02 80 chr2:55283331-55283411 9.32e-03 80 chr12:70446871-70446951 1.03e-04 1_[+2(2.08e-05)]_61_[+5(3.70e-05)]_\ 2 chr5:77955694-77955774 3.04e-02 80 chr10:35703413-35703493 3.60e-02 45_[+2(6.24e-05)]_27 chr1:154589556-154589636 1.33e-03 80 chr9:140196731-140196811 1.02e-01 40_[+1(1.73e-05)]_32 chr20:37321670-37321750 2.04e-03 34_[+4(5.19e-05)]_2_[+1(1.73e-05)]_\ 28 chr15:95388496-95388576 1.12e-01 80 chr21:43619701-43619781 1.72e-01 80 chr7:73208031-73208111 2.97e-02 80 chr11:91638673-91638753 7.00e-02 13_[+2(4.26e-05)]_59 chr3:80782939-80783019 2.70e-01 80 chr4:140075853-140075933 8.47e-02 80 chr1:91187135-91187215 3.05e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************