******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCE1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:150481818-150481898 1.0000 80 chr7:26890128-26890208 1.0000 80 chr1:4067157-4067237 1.0000 80 chr9:37840716-37840796 1.0000 80 chr1:52035548-52035628 1.0000 80 chr11:107436811-10743689 1.0000 80 chr2:47478241-47478321 1.0000 80 chr8:126676805-126676885 1.0000 80 chr12:112811449-11281152 1.0000 80 chr19:13842087-13842167 1.0000 80 chr5:174945002-174945082 1.0000 80 chr2:202652352-202652432 1.0000 80 chr3:65016697-65016777 1.0000 80 chr7:12991278-12991358 1.0000 80 chr1:87901352-87901432 1.0000 80 chr6:136931567-136931647 1.0000 80 chr2:65233783-65233863 1.0000 80 chr12:104198879-10419895 1.0000 80 chr9:125164835-125164915 1.0000 80 chrX:119683932-119684012 1.0000 80 chr8:38895804-38895884 1.0000 80 chr8:66629735-66629815 1.0000 80 chr6:3912284-3912364 1.0000 80 chr5:34924195-34924275 1.0000 80 chr3:186816866-186816946 1.0000 80 chr7:106317092-106317172 1.0000 80 chr1:110473842-110473922 1.0000 80 chr6:130160776-130160856 1.0000 80 chr7:143189223-143189303 1.0000 80 chr9:124049462-124049542 1.0000 80 chr6:10643530-10643610 1.0000 80 chr3:99544245-99544325 1.0000 80 chr6:10348134-10348214 1.0000 80 chr18:20248074-20248154 1.0000 80 chr19:9186424-9186504 1.0000 80 chrX:65382306-65382386 1.0000 80 chr20:57199076-57199156 1.0000 80 chr2:12317264-12317344 1.0000 80 chr17:15862523-15862603 1.0000 80 chr20:34411244-34411324 1.0000 80 chr1:67420673-67420753 1.0000 80 chr1:4067762-4067842 1.0000 80 chr16:69564716-69564796 1.0000 80 chr8:145992887-145992967 1.0000 80 chr15:79471537-79471617 1.0000 80 chr9:130841407-130841487 1.0000 80 chr5:74862817-74862897 1.0000 80 chr1:39583044-39583124 1.0000 80 chr10:3848151-3848231 1.0000 80 chr7:107915040-107915120 1.0000 80 chr1:87459174-87459254 1.0000 80 chr6:91078882-91078962 1.0000 80 chr6:45262225-45262305 1.0000 80 chr3:38191325-38191405 1.0000 80 chr3:33984155-33984235 1.0000 80 chr4:87863502-87863582 1.0000 80 chr2:159986927-159987007 1.0000 80 chr7:148400622-148400702 1.0000 80 chrX:14083162-14083242 1.0000 80 chr8:61242936-61243016 1.0000 80 chr16:14051745-14051825 1.0000 80 chr2:11893793-11893873 1.0000 80 chr13:101045127-10104520 1.0000 80 chr10:80218910-80218990 1.0000 80 chr8:142036931-142037011 1.0000 80 chr1:38999690-38999770 1.0000 80 chr18:9005604-9005684 1.0000 80 chr19:48829371-48829451 1.0000 80 chr7:133768852-133768932 1.0000 80 chr6:17971873-17971953 1.0000 80 chr6:52382501-52382581 1.0000 80 chr13:50819355-50819435 1.0000 80 chr17:16302060-16302140 1.0000 80 chr2:98527961-98528041 1.0000 80 chr11:119465587-11946566 1.0000 80 chr6:28655534-28655614 1.0000 80 chr6:26756731-26756811 1.0000 80 chr6:161223152-161223232 1.0000 80 chr1:32773083-32773163 1.0000 80 chr7:86740257-86740337 1.0000 80 chr1:21965241-21965321 1.0000 80 chr14:31669446-31669526 1.0000 80 chr5:37672410-37672490 1.0000 80 chr2:219287338-219287418 1.0000 80 chr3:142900967-142901047 1.0000 80 chr19:14495192-14495272 1.0000 80 chr22:41107693-41107773 1.0000 80 chr21:40159615-40159695 1.0000 80 chr3:43812271-43812351 1.0000 80 chr8:41650013-41650093 1.0000 80 chr15:72520943-72521023 1.0000 80 chr7:106676019-106676099 1.0000 80 chr3:183075635-183075715 1.0000 80 chr1:203576497-203576577 1.0000 80 chr3:33953493-33953573 1.0000 80 chr8:74284033-74284113 1.0000 80 chr1:224730704-224730784 1.0000 80 chr3:4573242-4573322 1.0000 80 chr10:17697740-17697820 1.0000 80 chr1:44992523-44992603 1.0000 80 chr3:45709701-45709781 1.0000 80 chr4:129566578-129566658 1.0000 80 chr16:9141824-9141904 1.0000 80 chr1:44514072-44514152 1.0000 80 chr12:104802482-10480256 1.0000 80 chr16:70470020-70470100 1.0000 80 chr20:32978780-32978860 1.0000 80 chr17:61538276-61538356 1.0000 80 chr20:33708107-33708187 1.0000 80 chr7:29686814-29686894 1.0000 80 chr7:116105990-116106070 1.0000 80 chr4:187751132-187751212 1.0000 80 chr1:117300843-117300923 1.0000 80 chr14:23005989-23006069 1.0000 80 chr17:55063199-55063279 1.0000 80 chr10:7070328-7070408 1.0000 80 chr3:4940412-4940492 1.0000 80 chr1:172903166-172903246 1.0000 80 chr19:11205899-11205979 1.0000 80 chr4:187766481-187766561 1.0000 80 chr7:155082891-155082971 1.0000 80 chr1:149911155-149911235 1.0000 80 chr1:42335958-42336038 1.0000 80 chr11:36171409-36171489 1.0000 80 chr17:39686559-39686639 1.0000 80 chr17:47049832-47049912 1.0000 80 chr1:153031903-153031983 1.0000 80 chr6:138235825-138235905 1.0000 80 chr7:99160649-99160729 1.0000 80 chr6:126267573-126267653 1.0000 80 chr1:246345561-246345641 1.0000 80 chr10:62042749-62042829 1.0000 80 chr5:132576340-132576420 1.0000 80 chr1:120809552-120809632 1.0000 80 chr6:34713326-34713406 1.0000 80 chr6:16224782-16224862 1.0000 80 chr10:52271671-52271751 1.0000 80 chr1:62174819-62174899 1.0000 80 chr17:75830723-75830803 1.0000 80 chr7:102632269-102632349 1.0000 80 chr1:245126910-245126990 1.0000 80 chr6:130173552-130173632 1.0000 80 chr8:126193325-126193405 1.0000 80 chr16:67302254-67302334 1.0000 80 chr22:31624025-31624105 1.0000 80 chr6:26026036-26026116 1.0000 80 chr7:127478182-127478262 1.0000 80 chr1:207484705-207484785 1.0000 80 chr5:70681186-70681266 1.0000 80 chr1:156084080-156084160 1.0000 80 chr11:118482013-11848209 1.0000 80 chr3:8671352-8671432 1.0000 80 chr22:47330940-47331020 1.0000 80 chr2:172081880-172081960 1.0000 80 chr3:47388917-47388997 1.0000 80 chr19:4145843-4145923 1.0000 80 chr20:40325246-40325326 1.0000 80 chr6:43979883-43979963 1.0000 80 chr8:29107600-29107680 1.0000 80 chr1:8933788-8933868 1.0000 80 chr6:113277979-113278059 1.0000 80 chr7:73265984-73266064 1.0000 80 chr1:28827628-28827708 1.0000 80 chr11:10921214-10921294 1.0000 80 chr8:40458100-40458180 1.0000 80 chr14:54902359-54902439 1.0000 80 chr22:26800986-26801066 1.0000 80 chr22:21910426-21910506 1.0000 80 chr7:123178366-123178446 1.0000 80 chr14:81868471-81868551 1.0000 80 chr3:16351263-16351343 1.0000 80 chr16:75658884-75658964 1.0000 80 chr2:12080464-12080544 1.0000 80 chr2:69828423-69828503 1.0000 80 chr9:108438725-108438805 1.0000 80 chr5:176421980-176422060 1.0000 80 chr20:5700665-5700745 1.0000 80 chr3:196758475-196758555 1.0000 80 chr3:139058298-139058378 1.0000 80 chr6:17715446-17715526 1.0000 80 chr1:10571242-10571322 1.0000 80 chr19:33488124-33488204 1.0000 80 chr4:80599731-80599811 1.0000 80 chr6:144126111-144126191 1.0000 80 chr9:108409957-108410037 1.0000 80 chr2:170526792-170526872 1.0000 80 chr2:100907709-100907789 1.0000 80 chr1:155194570-155194650 1.0000 80 chr3:5236558-5236638 1.0000 80 chr3:133662526-133662606 1.0000 80 chr1:161691840-161691920 1.0000 80 chr2:201270709-201270789 1.0000 80 chr7:150736568-150736648 1.0000 80 chr1:205703667-205703747 1.0000 80 chr6:27741795-27741875 1.0000 80 chr8:129162336-129162416 1.0000 80 chrX:65370186-65370266 1.0000 80 chr15:35849812-35849892 1.0000 80 chr9:37953852-37953932 1.0000 80 chr6:30737481-30737561 1.0000 80 chr1:8686596-8686676 1.0000 80 chr1:35602541-35602621 1.0000 80 chr10:66268028-66268108 1.0000 80 chr16:58010511-58010591 1.0000 80 chr3:195443022-195443102 1.0000 80 chr20:33301353-33301433 1.0000 80 chr8:101912760-101912840 1.0000 80 chr6:28514929-28515009 1.0000 80 chr6:119578334-119578414 1.0000 80 chr1:169281606-169281686 1.0000 80 chr2:170521632-170521712 1.0000 80 chr2:119560725-119560805 1.0000 80 chr12:45667754-45667834 1.0000 80 chr2:38591498-38591578 1.0000 80 chr19:40922959-40923039 1.0000 80 chr12:95910709-95910789 1.0000 80 chr3:23947706-23947786 1.0000 80 chr8:80766262-80766342 1.0000 80 chr5:95053999-95054079 1.0000 80 chr7:127624028-127624108 1.0000 80 chr15:63688056-63688136 1.0000 80 chr12:6748490-6748570 1.0000 80 chr6:90754737-90754817 1.0000 80 chr5:75668589-75668669 1.0000 80 chr5:71530194-71530274 1.0000 80 chr12:94316423-94316503 1.0000 80 chr9:125209216-125209296 1.0000 80 chr17:43201563-43201643 1.0000 80 chr8:125860450-125860530 1.0000 80 chr19:55471364-55471444 1.0000 80 chr2:170870542-170870622 1.0000 80 chr1:30664086-30664166 1.0000 80 chr2:17304340-17304420 1.0000 80 chr5:32369819-32369899 1.0000 80 chr11:44291707-44291787 1.0000 80 chr19:32864816-32864896 1.0000 80 chr7:92072201-92072281 1.0000 80 chr4:75375242-75375322 1.0000 80 chr1:114347496-114347576 1.0000 80 chr1:27400848-27400928 1.0000 80 chr8:99803249-99803329 1.0000 80 chr10:25782242-25782322 1.0000 80 chr4:170525866-170525946 1.0000 80 chr9:111666078-111666158 1.0000 80 chr10:13446416-13446496 1.0000 80 chr3:39680946-39681026 1.0000 80 chr6:28047785-28047865 1.0000 80 chr3:19979186-19979266 1.0000 80 chr6:25971538-25971618 1.0000 80 chrX:130700016-130700096 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SMARCE1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCE1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.275 C 0.23 G 0.233 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.275 C 0.23 G 0.233 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGASTCAY MEME-1 width = 8 sites = 172 llr = 1502 E-value = 2.5e-243 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :::4:a:4 probability G :a:5:::1 matrix T a:::a::5 bits 2.1 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.6 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAGTCAT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:27400848-27400928 17 1.68e-05 TGATAAAATA TGAGTCAT TATGGTGtga chr5:32369819-32369899 42 1.68e-05 gaggctgcag tgagtcat gatcatgcca chr6:30737481-30737561 32 1.68e-05 GTGTCTTTTG TGAGTCAT CCTTGCTGCT chrX:65370186-65370266 44 1.68e-05 ACATGCCATG TGAGTCAT GTATTTTGGT chr2:201270709-201270789 68 1.68e-05 ACTCATTCAG TGAGtcat ccctt chr1:161691840-161691920 56 1.68e-05 GGGTGGTTGG TGAGTCAT GCCTTTTCGT chr1:155194570-155194650 66 1.68e-05 CAAGCAGTTC TGAGTCAT CAGGTCA chr2:100907709-100907789 60 1.68e-05 GCCTCCTTGA TGAGTCAT GCCCTGCAGT chr20:5700665-5700745 24 1.68e-05 CCAGTGAAGA TGAGTCAT GGGCATCCGG chr16:75658884-75658964 16 1.68e-05 aactaaaaag tgagtcat gttccttgtt chr22:47330940-47331020 35 1.68e-05 GTTTTCAGGG TGAGTCAT CTGTGTGTCA chr7:102632269-102632349 41 1.68e-05 GTGCGCAGTG TGAGTCAT GCCTGTAAGA chr6:34713326-34713406 38 1.68e-05 ATTTCAAGAG TGAGTCAT AGggccggcg chr6:126267573-126267653 61 1.68e-05 gccaagtata tgagtcat cattttggag chr17:39686559-39686639 20 1.68e-05 TGGTCAGCTC TGAGTCAT TCCCTTATCA chr1:42335958-42336038 4 1.68e-05 CAC TGAGTCAT CCATTCAACA chr1:172903166-172903246 41 1.68e-05 ACAGCCATGC TGAGTCAT GCTGGCCAGA chr10:7070328-7070408 17 1.68e-05 gactcactaa tgagtcat aacccataat chr16:9141824-9141904 52 1.68e-05 GTCTAAGAGA TGAGTCAT CGCCTTTATG chr10:17697740-17697820 6 1.68e-05 TGGTA TGAGTCAT TTCCACTGTC chr7:106676019-106676099 27 1.68e-05 gtcaggaaga tgagtcat attcagtaaa chr15:72520943-72521023 17 1.68e-05 ATTGAAAGGT TGAGTCAT CTTCCCCACA chr3:43812271-43812351 69 1.68e-05 AGGCGAGTGG TGAGTCAT CACA chr22:41107693-41107773 14 1.68e-05 tacagagaca tgagtcat cgagaggcta chr19:14495192-14495272 46 1.68e-05 AAATGAGTGG TGAGTCAT TCCTTCCCTT chr6:52382501-52382581 38 1.68e-05 CACACACACA TGAGTCAT CTCACTGCTG chr18:9005604-9005684 57 1.68e-05 TAAGAAGCAG TGAGTCAT AGTCCGGATA chr3:33984155-33984235 54 1.68e-05 AGATAAGAGA TGAGTCAT ATTTGGGGAT chr10:3848151-3848231 39 1.68e-05 TTCATCCGCG TGAGTCAT TGCCCTGCTG chr5:74862817-74862897 71 1.68e-05 GTGGAATGTA TGAGTCAT GC chr8:145992887-145992967 31 1.68e-05 CGTACAGGCA TGAGTCAT TGTACCCAGC chr2:12317264-12317344 29 1.68e-05 TCTCCACTGG TGAGTCAT CTCCCGGCCT chr18:20248074-20248154 12 1.68e-05 CAGTGAGCTA TGAGTCAT GCAGTGACTC chr7:143189223-143189303 15 1.68e-05 atagaaagag tgagtcat catgacctta chr8:66629735-66629815 40 1.68e-05 ACTTGCAAGG TGAGTCAT TAGTAGATAA chr7:12991278-12991358 39 1.68e-05 GATAAGAAAG TGAGTCAT TTAAACAAAC chr3:65016697-65016777 38 1.68e-05 gataaaacca tgagtcat ctgagtatat chr19:13842087-13842167 28 1.68e-05 TAGTCACCAC TGAGTCAT TTCTGCAAAC chr11:107436811-10743689 61 1.68e-05 gtcatccctc tgagtcat ccctctgctc chr1:52035548-52035628 66 1.68e-05 atcaggaggc tgagtcat aaggagg chr7:26890128-26890208 20 1.68e-05 gaggctgcag tgagtcat gatcacacca chr6:25971538-25971618 71 3.34e-05 CCAGCTTCAG TGACTCAT GA chr10:13446416-13446496 73 3.34e-05 TAgagtgtgg tgactcat chr4:170525866-170525946 56 3.34e-05 gagataagta tgactcat gaaattttgt chr5:75668589-75668669 23 3.34e-05 GTCATTAGGA TGACTCAT CATTTTTCTA chr2:119560725-119560805 40 3.34e-05 GTGATAAAGA TGACTCAT ACCCTGGCCC chr8:101912760-101912840 65 3.34e-05 GCAGTGCAGA TGACTCAT CTGGGTAA chr20:33301353-33301433 58 3.34e-05 CAATGGGGTC TGACTCAT AAATGACTAC chr9:37953852-37953932 2 3.34e-05 C TGACTCAT CTTGGGGAGT chr1:205703667-205703747 41 3.34e-05 CCATTCATGA TGACTCAT AATGACTCAT chr6:17715446-17715526 52 3.34e-05 GAGTCAGCAG TGACTCAT AAGCACTTCC chr3:196758475-196758555 72 3.34e-05 CATTCAGCTG TGACTCAT C chr3:16351263-16351343 1 3.34e-05 . tgactcat tccacctctc chr7:123178366-123178446 28 3.34e-05 TCTAGAATAC TGACTCAT CTCTAGTCTC chr14:54902359-54902439 27 3.34e-05 gctgaaagaa tgaCTCAT TTATTCCAGA chr20:40325246-40325326 44 3.34e-05 CAGGAATCAG TGACTCAT ATCAGTCTCT chr19:4145843-4145923 43 3.34e-05 TTCTCCTGCC TGACTCAT GCAATGGCCA chr1:245126910-245126990 22 3.34e-05 acaaaaaTGG TGACTCAT Cttcttatct chr17:75830723-75830803 27 3.34e-05 GGCTGCTGAG TGACTCAT CAGCCTCAGC chr10:52271671-52271751 28 3.34e-05 ctcagaagtc tgactcat ctccgtatct chr5:132576340-132576420 24 3.34e-05 TCTTAGCGCA TGACTCAT CTCTTCGCGC chr11:36171409-36171489 37 3.34e-05 TCATGACTCA TGACTCAT GAATGTGGCT chr7:155082891-155082971 29 3.34e-05 cactcaagca tgactcat ccaaggcctc chr4:187751132-187751212 51 3.34e-05 tcttctctgt tgactcat tccttatcag chr7:116105990-116106070 18 3.34e-05 GCCTACCAAG TGACTCAT CCTTTCTTAT chr1:44992523-44992603 66 3.34e-05 ttagcttctc tgactcat ctctttg chr21:40159615-40159695 28 3.34e-05 AACATCTAAA TGACTCAT GCCTACACCA chr7:133768852-133768932 43 3.34e-05 CCTGGAAACA TGACTCAT CCAAGGGTGT chr16:14051745-14051825 52 3.34e-05 ACTTCGAGCA TGACTCAT TATAAACAAA chr4:87863502-87863582 7 3.34e-05 ATCAGG TGACTCAT CTGTCCAGAT chr6:91078882-91078962 15 3.34e-05 CTCAAGGTGG TGACTCAT TCAGCAACTA chr9:130841407-130841487 52 3.34e-05 AGATAAATCA TGACTCAT TTTCTGCAGG chr20:34411244-34411324 9 3.34e-05 gggaatgg tgactcat gcctataatc chr6:10348134-10348214 19 3.34e-05 AATCTCTCTG TGACTCAT TCGATGAGGA chr3:186816866-186816946 42 3.34e-05 aaaaccctaa tgactcat ccaaaagcct chr5:34924195-34924275 39 3.34e-05 AGTCACACAG TGACTCAT TCAGGAGAAA chr8:38895804-38895884 31 3.34e-05 gtatctctca tgactcat ttcctcactg chr5:174945002-174945082 19 3.34e-05 GCATTCAGCA TGACTCAT CCATCCCCCT chr3:19979186-19979266 28 4.82e-05 ACCAAGAGTC TGAGTCAC TCACCTTATC chr6:28047785-28047865 41 4.82e-05 tgctccgtcc tgagtcac ccctggtcac chr3:39680946-39681026 14 4.82e-05 GGAAAAGGGC TGAGTCAC AGTGGTGTAT chr17:43201563-43201643 18 4.82e-05 GAAATGGGGG TGAGTCAC CGGGGCCTGC chr8:80766262-80766342 49 4.82e-05 AGAGAGGAGC TGAGTCAC AACAACAGGT chr15:35849812-35849892 38 4.82e-05 GTGAAGAAGA TGAGTCAC AAATTGTAAT chr2:170526792-170526872 44 4.82e-05 CACTGGGCTA TGAGTCAC ACAAAGACTC chr9:108409957-108410037 67 4.82e-05 GACCCATCGA TGAGTCAC GTCCCT chr22:21910426-21910506 48 4.82e-05 gagccatgag tgagtcac cgcactcctg chr8:40458100-40458180 27 4.82e-05 GACAGAGCAG TGAGTCAC ACTTGCTATA chr11:10921214-10921294 36 4.82e-05 CAGAGGCAGA TGAGTCAC AATCCCAGAT chr6:113277979-113278059 43 4.82e-05 CAACAGCCCA TGAGTCAC TCTCTTGTTT chr1:207484705-207484785 24 4.82e-05 AAAACCTTAG TGAGTCAC CAGAGTGATT chr7:99160649-99160729 40 4.82e-05 TACATTTCAG TGAGTCAC CCAGAATGGT chr1:153031903-153031983 34 4.82e-05 TAACACAGTC TGAGTCAC ACCCTGCGAC chr14:23005989-23006069 42 4.82e-05 GAGTCAGGCG TGAGTCAC CCAAGACTCT chr20:33708107-33708187 40 4.82e-05 ataacaggcg tgagtcac tgcacccagc chr20:32978780-32978860 60 4.82e-05 attacaggag tgagtcac cacgcccggc chr12:104802482-10480256 34 4.82e-05 GCTGGAATAG TGAGTCAC CCTCGGGGtt chr3:4573242-4573322 17 4.82e-05 gcagtctgca tgagtcac cactgcttac chr7:86740257-86740337 38 4.82e-05 TACACAGAAG TGAGTCAC CACAGCACGA chr6:17971873-17971953 64 4.82e-05 attacaggag tgagtcac cacgtccgg chr19:48829371-48829451 9 4.82e-05 GGTGGGGA TGAGTCAC CAGATGACTC chrX:14083162-14083242 38 4.82e-05 TAACCCAAGA TGAGTCAC ACCACTCCCT chr1:39583044-39583124 50 4.82e-05 AAACTTGCCA TGAGTCAC ACTGGGGAGT chr1:67420673-67420753 41 4.82e-05 TTTTACAAAG TGAGTCAC ACTTCTTATC chr20:57199076-57199156 20 4.82e-05 GTGTCTGGAG TGAGTCAC TGGCTGAGCC chr9:124049462-124049542 33 4.82e-05 GACTCAGCCC TGAGTCAC CGGGAGGCTG chr6:3912284-3912364 32 4.82e-05 CAGGCACTAG TGAGTCAC TTTTTGAGGC chr6:136931567-136931647 2 4.82e-05 G TGAGTCAC TTCCTCTTCT chr8:126676805-126676885 23 4.82e-05 TGGTGTCCGC TGAGTCAC CTGTGTCATT chr1:114347496-114347576 65 6.28e-05 ATAAGAAAGA TGACTCAC AAGAGCAT chr12:94316423-94316503 31 6.28e-05 GTAAAAACTA TGACTCAC ATTCAAACCA chr7:150736568-150736648 23 6.28e-05 CAGGGACCAG TGACTCAC CTTCCTCCTC chr3:5236558-5236638 69 6.28e-05 AGAGAGGAGA TGACTCAC TGCC chr6:144126111-144126191 45 6.28e-05 tggagtgaag tgactcac taagggtcac chr1:28827628-28827708 69 6.28e-05 GCCTCAGCAA TGACTCAC TTCT chr1:8933788-8933868 36 6.28e-05 GCTAGGCCTG TGACTCAC AGATGGTGAC chr8:29107600-29107680 47 6.28e-05 AAATCTACTG TGACTCAC CACCCACCAC chr6:26026036-26026116 21 6.28e-05 tatctgctga tgactcac acatttttat chr16:67302254-67302334 44 6.28e-05 ggccggatca tgactcac tgcttcctca chr17:47049832-47049912 14 6.28e-05 TCCCCACTGG TGActcac cgccaccccc chr16:70470020-70470100 41 6.28e-05 ccaggagcgg tgactcac gcctgtaatc chr3:33953493-33953573 23 6.28e-05 CATTTTTCAG TGACTCAC CACCTTACTA chr1:32773083-32773163 27 6.28e-05 ggctactaag tgactcac aggtgggtag chr11:119465587-11946566 33 6.28e-05 TTGTGGCCGC TGACTCAC ATAAAGCTGT chr13:50819355-50819435 57 6.28e-05 gtttcagctc tgactcac tgtgtaaacc chr13:101045127-10104520 23 6.28e-05 GAAGGTTGAG TGACTCAC CCagggaagt chr15:79471537-79471617 36 6.28e-05 CCTGGGAGGA TGACTCAC AGCAGCGGGG chr16:69564716-69564796 25 6.28e-05 GCGGCGGGGC TGACTCAC CGGATGACTC chr19:9186424-9186504 13 6.28e-05 CCACTGCCCA TGACTCAC TCGGCCCCCC chrX:119683932-119684012 35 6.28e-05 CAGCTACCAG TGACTCAC ATGGCACTCG chr9:125164835-125164915 45 6.28e-05 TTCTAATCTA TGACTCAC ACTCTGCATC chr2:65233783-65233863 20 6.28e-05 ccaggcatgg tgactcac gcttgtaatc chr2:47478241-47478321 47 6.28e-05 ggtgcgatca tgactcac tgcagcctca chr9:37840716-37840796 35 6.28e-05 gccttcacac tgactcac ccctcactca chr16:58010511-58010591 29 7.77e-05 CTGCTATTGG TGAGTCAG AAGCAGGGAG chr19:11205899-11205979 30 7.77e-05 AATTGAGCTG TGAGTCAG TGAGGTGTGT chr1:44514072-44514152 63 7.77e-05 TAAGAACAGA TGAGTCAG AGGTTTCTGC chr1:224730704-224730784 27 7.77e-05 gtgggtaggc tgagtcag aaagaccaac chr1:30664086-30664166 55 9.25e-05 AGACCAGTGA TGACTCAG AGCAGCTTCC chr15:63688056-63688136 11 9.25e-05 tgaccaaggg tgactcag gtcaaagaag chr3:195443022-195443102 37 9.25e-05 tgactcagga tgactcag attagagcag chr3:133662526-133662606 18 9.25e-05 tggaagtagg TGACTCAG AGGTAAGTTA chr1:21965241-21965321 20 9.25e-05 gcactcacta tgactcag ctccctgagc chr17:16302060-16302140 53 9.25e-05 ACATCTGCAA TGACTCAG ATCTCTGCTC chr1:87459174-87459254 34 9.25e-05 GTTTACTATA TGACTCAG CTAGATTCTA chr2:17304340-17304420 9 1.10e-04 agaccagc tgagtcaa ccctggttat chr8:125860450-125860530 64 1.10e-04 GGAATTAGTA TGAGTCAA AAGGAAGAA chr17:61538276-61538356 38 1.10e-04 AAGACAGATA TGAGTCAA AGCTTACTCA chr14:81868471-81868551 41 1.28e-04 AAGCAGAGAG TGACTCAA GAAGTGTGCT chr7:127478182-127478262 34 1.28e-04 tgaccagggg tgactcaa aggacggagc chr2:219287338-219287418 41 1.28e-04 CACTAAGAGG TGACTCAA AGTCAAGGTG chr1:169281606-169281686 27 1.47e-04 ccacaaggta tgattcat tgagagccat chr6:130173552-130173632 29 1.47e-04 acaggaagta tgattcat ctttatCATT chr3:45709701-45709781 34 1.47e-04 GGGAAGTGGC TGATTCAT CTTACCAGTC chr2:172081880-172081960 22 1.65e-04 cctaacatca ttagtcat cagggactca chr10:62042749-62042829 32 1.65e-04 ctactatgtg ttagtcat tgtgtcaata chr3:99544245-99544325 34 1.65e-04 GACTATGTTA TTAGTCAT TGCTCTACAC chr19:32864816-32864896 57 2.57e-04 aaaggcttgc ttagtcac tgggcatgat chr7:127624028-127624108 42 2.57e-04 tgtcaccctc ttagtcac cgcttagctg chr7:73265984-73266064 47 2.57e-04 tcctccctaa tgactaat gaggttgaac chr6:138235825-138235905 43 3.11e-04 ttcaaggtat tgaatcat attgtcagtg chr3:183075635-183075715 36 3.11e-04 gacaccccta tgagtaac agtgataaga chr8:129162336-129162416 21 3.46e-04 TGGGCAACAA TGAATCAC CGGCAGAATC chr22:26800986-26801066 48 3.60e-04 CTAATCCTGC TGAGCCAT TAGCCACAAG chr2:98527961-98528041 39 4.21e-04 AGGACGTGTA TCACTCAT GTGCACTTTC chr9:108438725-108438805 64 4.68e-04 ATTATGGGGC TGACCCAC TCTCCATGC chr6:43979883-43979963 26 4.68e-04 TCACACCAGA TGAGTTAT GGTCCCAGAA chr3:47388917-47388997 33 4.68e-04 GGGAAACTCT TCAGTCAC ACTTTTCCAA chr1:203576497-203576577 45 4.68e-04 CTTCATTTAC TGAGTTAT CAAAAACCAC chr2:38591498-38591578 43 6.02e-04 CTCAAAGTGA TGAGTAAG AAGTGTAATG chr8:74284033-74284113 33 6.20e-04 CCATTCAGCA TGACTAAG GCTGGTTACT chr12:112811449-11281152 46 6.20e-04 GTGACAATGA TGACTAAG AAGATGCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:27400848-27400928 1.7e-05 16_[+1]_56 chr5:32369819-32369899 1.7e-05 41_[+1]_31 chr6:30737481-30737561 1.7e-05 31_[+1]_41 chrX:65370186-65370266 1.7e-05 43_[+1]_29 chr2:201270709-201270789 1.7e-05 67_[+1]_5 chr1:161691840-161691920 1.7e-05 55_[+1]_17 chr1:155194570-155194650 1.7e-05 65_[+1]_7 chr2:100907709-100907789 1.7e-05 59_[+1]_13 chr20:5700665-5700745 1.7e-05 23_[+1]_49 chr16:75658884-75658964 1.7e-05 15_[+1]_57 chr22:47330940-47331020 1.7e-05 34_[+1]_38 chr7:102632269-102632349 1.7e-05 40_[+1]_32 chr6:34713326-34713406 1.7e-05 37_[+1]_35 chr6:126267573-126267653 1.7e-05 60_[+1]_12 chr17:39686559-39686639 1.7e-05 19_[+1]_53 chr1:42335958-42336038 1.7e-05 3_[+1]_69 chr1:172903166-172903246 1.7e-05 40_[+1]_32 chr10:7070328-7070408 1.7e-05 16_[+1]_56 chr16:9141824-9141904 1.7e-05 51_[+1]_21 chr10:17697740-17697820 1.7e-05 5_[+1]_67 chr7:106676019-106676099 1.7e-05 26_[+1]_46 chr15:72520943-72521023 1.7e-05 16_[+1]_56 chr3:43812271-43812351 1.7e-05 68_[+1]_4 chr22:41107693-41107773 1.7e-05 13_[+1]_59 chr19:14495192-14495272 1.7e-05 45_[+1]_27 chr6:52382501-52382581 1.7e-05 37_[+1]_35 chr18:9005604-9005684 1.7e-05 56_[+1]_16 chr3:33984155-33984235 1.7e-05 53_[+1]_19 chr10:3848151-3848231 1.7e-05 38_[+1]_34 chr5:74862817-74862897 1.7e-05 70_[+1]_2 chr8:145992887-145992967 1.7e-05 30_[+1]_42 chr2:12317264-12317344 1.7e-05 28_[+1]_44 chr18:20248074-20248154 1.7e-05 11_[+1]_61 chr7:143189223-143189303 1.7e-05 14_[+1]_58 chr8:66629735-66629815 1.7e-05 39_[+1]_33 chr7:12991278-12991358 1.7e-05 38_[+1]_34 chr3:65016697-65016777 1.7e-05 37_[+1]_35 chr19:13842087-13842167 1.7e-05 27_[+1]_45 chr11:107436811-10743689 1.7e-05 60_[+1]_12 chr1:52035548-52035628 1.7e-05 65_[+1]_7 chr7:26890128-26890208 1.7e-05 19_[+1]_53 chr6:25971538-25971618 3.3e-05 70_[+1]_2 chr10:13446416-13446496 3.3e-05 72_[+1] chr4:170525866-170525946 3.3e-05 55_[+1]_17 chr5:75668589-75668669 3.3e-05 22_[+1]_50 chr2:119560725-119560805 3.3e-05 39_[+1]_33 chr8:101912760-101912840 3.3e-05 64_[+1]_8 chr20:33301353-33301433 3.3e-05 57_[+1]_15 chr9:37953852-37953932 3.3e-05 1_[+1]_71 chr1:205703667-205703747 3.3e-05 40_[+1]_32 chr6:17715446-17715526 3.3e-05 51_[+1]_21 chr3:196758475-196758555 3.3e-05 71_[+1]_1 chr3:16351263-16351343 3.3e-05 [+1]_72 chr7:123178366-123178446 3.3e-05 27_[+1]_45 chr14:54902359-54902439 3.3e-05 26_[+1]_46 chr20:40325246-40325326 3.3e-05 43_[+1]_29 chr19:4145843-4145923 3.3e-05 42_[+1]_30 chr1:245126910-245126990 3.3e-05 21_[+1]_51 chr17:75830723-75830803 3.3e-05 26_[+1]_46 chr10:52271671-52271751 3.3e-05 27_[+1]_45 chr5:132576340-132576420 3.3e-05 23_[+1]_49 chr11:36171409-36171489 3.3e-05 36_[+1]_36 chr7:155082891-155082971 3.3e-05 28_[+1]_44 chr4:187751132-187751212 3.3e-05 50_[+1]_22 chr7:116105990-116106070 3.3e-05 17_[+1]_55 chr1:44992523-44992603 3.3e-05 65_[+1]_7 chr21:40159615-40159695 3.3e-05 27_[+1]_45 chr7:133768852-133768932 3.3e-05 42_[+1]_30 chr16:14051745-14051825 3.3e-05 51_[+1]_21 chr4:87863502-87863582 3.3e-05 6_[+1]_66 chr6:91078882-91078962 3.3e-05 14_[+1]_58 chr9:130841407-130841487 3.3e-05 51_[+1]_21 chr20:34411244-34411324 3.3e-05 8_[+1]_64 chr6:10348134-10348214 3.3e-05 18_[+1]_54 chr3:186816866-186816946 3.3e-05 41_[+1]_31 chr5:34924195-34924275 3.3e-05 38_[+1]_34 chr8:38895804-38895884 3.3e-05 30_[+1]_42 chr5:174945002-174945082 3.3e-05 18_[+1]_54 chr3:19979186-19979266 4.8e-05 27_[+1]_45 chr6:28047785-28047865 4.8e-05 40_[+1]_32 chr3:39680946-39681026 4.8e-05 13_[+1]_59 chr17:43201563-43201643 4.8e-05 17_[+1]_55 chr8:80766262-80766342 4.8e-05 48_[+1]_24 chr15:35849812-35849892 4.8e-05 37_[+1]_35 chr2:170526792-170526872 4.8e-05 43_[+1]_29 chr9:108409957-108410037 4.8e-05 66_[+1]_6 chr22:21910426-21910506 4.8e-05 47_[+1]_25 chr8:40458100-40458180 4.8e-05 26_[+1]_46 chr11:10921214-10921294 4.8e-05 35_[+1]_37 chr6:113277979-113278059 4.8e-05 42_[+1]_30 chr1:207484705-207484785 4.8e-05 23_[+1]_49 chr7:99160649-99160729 4.8e-05 39_[+1]_33 chr1:153031903-153031983 4.8e-05 33_[+1]_39 chr14:23005989-23006069 4.8e-05 41_[+1]_31 chr20:33708107-33708187 4.8e-05 39_[+1]_33 chr20:32978780-32978860 4.8e-05 59_[+1]_13 chr12:104802482-10480256 4.8e-05 33_[+1]_39 chr3:4573242-4573322 4.8e-05 16_[+1]_56 chr7:86740257-86740337 4.8e-05 37_[+1]_35 chr6:17971873-17971953 4.8e-05 63_[+1]_9 chr19:48829371-48829451 4.8e-05 8_[+1]_64 chrX:14083162-14083242 4.8e-05 37_[+1]_35 chr1:39583044-39583124 4.8e-05 49_[+1]_23 chr1:67420673-67420753 4.8e-05 40_[+1]_32 chr20:57199076-57199156 4.8e-05 19_[+1]_53 chr9:124049462-124049542 4.8e-05 32_[+1]_40 chr6:3912284-3912364 4.8e-05 31_[+1]_41 chr6:136931567-136931647 4.8e-05 1_[+1]_71 chr8:126676805-126676885 4.8e-05 22_[+1]_50 chr1:114347496-114347576 6.3e-05 64_[+1]_8 chr12:94316423-94316503 6.3e-05 30_[+1]_42 chr7:150736568-150736648 6.3e-05 22_[+1]_50 chr3:5236558-5236638 6.3e-05 68_[+1]_4 chr6:144126111-144126191 6.3e-05 44_[+1]_28 chr1:28827628-28827708 6.3e-05 68_[+1]_4 chr1:8933788-8933868 6.3e-05 35_[+1]_37 chr8:29107600-29107680 6.3e-05 46_[+1]_26 chr6:26026036-26026116 6.3e-05 20_[+1]_52 chr16:67302254-67302334 6.3e-05 43_[+1]_29 chr17:47049832-47049912 6.3e-05 13_[+1]_59 chr16:70470020-70470100 6.3e-05 40_[+1]_32 chr3:33953493-33953573 6.3e-05 22_[+1]_50 chr1:32773083-32773163 6.3e-05 26_[+1]_46 chr11:119465587-11946566 6.3e-05 32_[+1]_40 chr13:50819355-50819435 6.3e-05 56_[+1]_16 chr13:101045127-10104520 6.3e-05 22_[+1]_50 chr15:79471537-79471617 6.3e-05 35_[+1]_37 chr16:69564716-69564796 6.3e-05 24_[+1]_48 chr19:9186424-9186504 6.3e-05 12_[+1]_60 chrX:119683932-119684012 6.3e-05 34_[+1]_38 chr9:125164835-125164915 6.3e-05 44_[+1]_28 chr2:65233783-65233863 6.3e-05 19_[+1]_53 chr2:47478241-47478321 6.3e-05 46_[+1]_26 chr9:37840716-37840796 6.3e-05 34_[+1]_38 chr16:58010511-58010591 7.8e-05 28_[+1]_44 chr19:11205899-11205979 7.8e-05 29_[+1]_43 chr1:44514072-44514152 7.8e-05 62_[+1]_10 chr1:224730704-224730784 7.8e-05 26_[+1]_46 chr1:30664086-30664166 9.3e-05 54_[+1]_18 chr15:63688056-63688136 9.3e-05 10_[+1]_62 chr3:195443022-195443102 9.3e-05 36_[+1]_36 chr3:133662526-133662606 9.3e-05 17_[+1]_55 chr1:21965241-21965321 9.3e-05 19_[+1]_53 chr17:16302060-16302140 9.3e-05 52_[+1]_20 chr1:87459174-87459254 9.3e-05 33_[+1]_39 chr2:17304340-17304420 0.00011 8_[+1]_64 chr8:125860450-125860530 0.00011 63_[+1]_9 chr17:61538276-61538356 0.00011 37_[+1]_35 chr14:81868471-81868551 0.00013 40_[+1]_32 chr7:127478182-127478262 0.00013 33_[+1]_39 chr2:219287338-219287418 0.00013 40_[+1]_32 chr1:169281606-169281686 0.00015 26_[+1]_46 chr6:130173552-130173632 0.00015 28_[+1]_44 chr3:45709701-45709781 0.00015 33_[+1]_39 chr2:172081880-172081960 0.00017 21_[+1]_51 chr10:62042749-62042829 0.00017 31_[+1]_41 chr3:99544245-99544325 0.00017 33_[+1]_39 chr19:32864816-32864896 0.00026 56_[+1]_16 chr7:127624028-127624108 0.00026 41_[+1]_31 chr7:73265984-73266064 0.00026 46_[+1]_26 chr6:138235825-138235905 0.00031 42_[+1]_30 chr3:183075635-183075715 0.00031 35_[+1]_37 chr8:129162336-129162416 0.00035 20_[+1]_52 chr22:26800986-26801066 0.00036 47_[+1]_25 chr2:98527961-98528041 0.00042 38_[+1]_34 chr9:108438725-108438805 0.00047 63_[+1]_9 chr6:43979883-43979963 0.00047 25_[+1]_47 chr3:47388917-47388997 0.00047 32_[+1]_40 chr1:203576497-203576577 0.00047 44_[+1]_28 chr2:38591498-38591578 0.0006 42_[+1]_30 chr8:74284033-74284113 0.00062 32_[+1]_40 chr12:112811449-11281152 0.00062 45_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAY width=8 seqs=172 chr1:27400848-27400928 ( 17) TGAGTCAT 1 chr5:32369819-32369899 ( 42) TGAGTCAT 1 chr6:30737481-30737561 ( 32) TGAGTCAT 1 chrX:65370186-65370266 ( 44) TGAGTCAT 1 chr2:201270709-201270789 ( 68) TGAGTCAT 1 chr1:161691840-161691920 ( 56) TGAGTCAT 1 chr1:155194570-155194650 ( 66) TGAGTCAT 1 chr2:100907709-100907789 ( 60) TGAGTCAT 1 chr20:5700665-5700745 ( 24) TGAGTCAT 1 chr16:75658884-75658964 ( 16) TGAGTCAT 1 chr22:47330940-47331020 ( 35) TGAGTCAT 1 chr7:102632269-102632349 ( 41) TGAGTCAT 1 chr6:34713326-34713406 ( 38) TGAGTCAT 1 chr6:126267573-126267653 ( 61) TGAGTCAT 1 chr17:39686559-39686639 ( 20) TGAGTCAT 1 chr1:42335958-42336038 ( 4) TGAGTCAT 1 chr1:172903166-172903246 ( 41) TGAGTCAT 1 chr10:7070328-7070408 ( 17) TGAGTCAT 1 chr16:9141824-9141904 ( 52) TGAGTCAT 1 chr10:17697740-17697820 ( 6) TGAGTCAT 1 chr7:106676019-106676099 ( 27) TGAGTCAT 1 chr15:72520943-72521023 ( 17) TGAGTCAT 1 chr3:43812271-43812351 ( 69) TGAGTCAT 1 chr22:41107693-41107773 ( 14) TGAGTCAT 1 chr19:14495192-14495272 ( 46) TGAGTCAT 1 chr6:52382501-52382581 ( 38) TGAGTCAT 1 chr18:9005604-9005684 ( 57) TGAGTCAT 1 chr3:33984155-33984235 ( 54) TGAGTCAT 1 chr10:3848151-3848231 ( 39) TGAGTCAT 1 chr5:74862817-74862897 ( 71) TGAGTCAT 1 chr8:145992887-145992967 ( 31) TGAGTCAT 1 chr2:12317264-12317344 ( 29) TGAGTCAT 1 chr18:20248074-20248154 ( 12) TGAGTCAT 1 chr7:143189223-143189303 ( 15) TGAGTCAT 1 chr8:66629735-66629815 ( 40) TGAGTCAT 1 chr7:12991278-12991358 ( 39) TGAGTCAT 1 chr3:65016697-65016777 ( 38) TGAGTCAT 1 chr19:13842087-13842167 ( 28) TGAGTCAT 1 chr11:107436811-10743689 ( 61) TGAGTCAT 1 chr1:52035548-52035628 ( 66) TGAGTCAT 1 chr7:26890128-26890208 ( 20) TGAGTCAT 1 chr6:25971538-25971618 ( 71) TGACTCAT 1 chr10:13446416-13446496 ( 73) TGACTCAT 1 chr4:170525866-170525946 ( 56) TGACTCAT 1 chr5:75668589-75668669 ( 23) TGACTCAT 1 chr2:119560725-119560805 ( 40) TGACTCAT 1 chr8:101912760-101912840 ( 65) TGACTCAT 1 chr20:33301353-33301433 ( 58) TGACTCAT 1 chr9:37953852-37953932 ( 2) TGACTCAT 1 chr1:205703667-205703747 ( 41) TGACTCAT 1 chr6:17715446-17715526 ( 52) TGACTCAT 1 chr3:196758475-196758555 ( 72) TGACTCAT 1 chr3:16351263-16351343 ( 1) TGACTCAT 1 chr7:123178366-123178446 ( 28) TGACTCAT 1 chr14:54902359-54902439 ( 27) TGACTCAT 1 chr20:40325246-40325326 ( 44) TGACTCAT 1 chr19:4145843-4145923 ( 43) TGACTCAT 1 chr1:245126910-245126990 ( 22) TGACTCAT 1 chr17:75830723-75830803 ( 27) TGACTCAT 1 chr10:52271671-52271751 ( 28) TGACTCAT 1 chr5:132576340-132576420 ( 24) TGACTCAT 1 chr11:36171409-36171489 ( 37) TGACTCAT 1 chr7:155082891-155082971 ( 29) TGACTCAT 1 chr4:187751132-187751212 ( 51) TGACTCAT 1 chr7:116105990-116106070 ( 18) TGACTCAT 1 chr1:44992523-44992603 ( 66) TGACTCAT 1 chr21:40159615-40159695 ( 28) TGACTCAT 1 chr7:133768852-133768932 ( 43) TGACTCAT 1 chr16:14051745-14051825 ( 52) TGACTCAT 1 chr4:87863502-87863582 ( 7) TGACTCAT 1 chr6:91078882-91078962 ( 15) TGACTCAT 1 chr9:130841407-130841487 ( 52) TGACTCAT 1 chr20:34411244-34411324 ( 9) TGACTCAT 1 chr6:10348134-10348214 ( 19) TGACTCAT 1 chr3:186816866-186816946 ( 42) TGACTCAT 1 chr5:34924195-34924275 ( 39) TGACTCAT 1 chr8:38895804-38895884 ( 31) TGACTCAT 1 chr5:174945002-174945082 ( 19) TGACTCAT 1 chr3:19979186-19979266 ( 28) TGAGTCAC 1 chr6:28047785-28047865 ( 41) TGAGTCAC 1 chr3:39680946-39681026 ( 14) TGAGTCAC 1 chr17:43201563-43201643 ( 18) TGAGTCAC 1 chr8:80766262-80766342 ( 49) TGAGTCAC 1 chr15:35849812-35849892 ( 38) TGAGTCAC 1 chr2:170526792-170526872 ( 44) TGAGTCAC 1 chr9:108409957-108410037 ( 67) TGAGTCAC 1 chr22:21910426-21910506 ( 48) TGAGTCAC 1 chr8:40458100-40458180 ( 27) TGAGTCAC 1 chr11:10921214-10921294 ( 36) TGAGTCAC 1 chr6:113277979-113278059 ( 43) TGAGTCAC 1 chr1:207484705-207484785 ( 24) TGAGTCAC 1 chr7:99160649-99160729 ( 40) TGAGTCAC 1 chr1:153031903-153031983 ( 34) TGAGTCAC 1 chr14:23005989-23006069 ( 42) TGAGTCAC 1 chr20:33708107-33708187 ( 40) TGAGTCAC 1 chr20:32978780-32978860 ( 60) TGAGTCAC 1 chr12:104802482-10480256 ( 34) TGAGTCAC 1 chr3:4573242-4573322 ( 17) TGAGTCAC 1 chr7:86740257-86740337 ( 38) TGAGTCAC 1 chr6:17971873-17971953 ( 64) TGAGTCAC 1 chr19:48829371-48829451 ( 9) TGAGTCAC 1 chrX:14083162-14083242 ( 38) TGAGTCAC 1 chr1:39583044-39583124 ( 50) TGAGTCAC 1 chr1:67420673-67420753 ( 41) TGAGTCAC 1 chr20:57199076-57199156 ( 20) TGAGTCAC 1 chr9:124049462-124049542 ( 33) TGAGTCAC 1 chr6:3912284-3912364 ( 32) TGAGTCAC 1 chr6:136931567-136931647 ( 2) TGAGTCAC 1 chr8:126676805-126676885 ( 23) TGAGTCAC 1 chr1:114347496-114347576 ( 65) TGACTCAC 1 chr12:94316423-94316503 ( 31) TGACTCAC 1 chr7:150736568-150736648 ( 23) TGACTCAC 1 chr3:5236558-5236638 ( 69) TGACTCAC 1 chr6:144126111-144126191 ( 45) TGACTCAC 1 chr1:28827628-28827708 ( 69) TGACTCAC 1 chr1:8933788-8933868 ( 36) TGACTCAC 1 chr8:29107600-29107680 ( 47) TGACTCAC 1 chr6:26026036-26026116 ( 21) TGACTCAC 1 chr16:67302254-67302334 ( 44) TGACTCAC 1 chr17:47049832-47049912 ( 14) TGACTCAC 1 chr16:70470020-70470100 ( 41) TGACTCAC 1 chr3:33953493-33953573 ( 23) TGACTCAC 1 chr1:32773083-32773163 ( 27) TGACTCAC 1 chr11:119465587-11946566 ( 33) TGACTCAC 1 chr13:50819355-50819435 ( 57) TGACTCAC 1 chr13:101045127-10104520 ( 23) TGACTCAC 1 chr15:79471537-79471617 ( 36) TGACTCAC 1 chr16:69564716-69564796 ( 25) TGACTCAC 1 chr19:9186424-9186504 ( 13) TGACTCAC 1 chrX:119683932-119684012 ( 35) TGACTCAC 1 chr9:125164835-125164915 ( 45) TGACTCAC 1 chr2:65233783-65233863 ( 20) TGACTCAC 1 chr2:47478241-47478321 ( 47) TGACTCAC 1 chr9:37840716-37840796 ( 35) TGACTCAC 1 chr16:58010511-58010591 ( 29) TGAGTCAG 1 chr19:11205899-11205979 ( 30) TGAGTCAG 1 chr1:44514072-44514152 ( 63) TGAGTCAG 1 chr1:224730704-224730784 ( 27) TGAGTCAG 1 chr1:30664086-30664166 ( 55) TGACTCAG 1 chr15:63688056-63688136 ( 11) TGACTCAG 1 chr3:195443022-195443102 ( 37) TGACTCAG 1 chr3:133662526-133662606 ( 18) TGACTCAG 1 chr1:21965241-21965321 ( 20) TGACTCAG 1 chr17:16302060-16302140 ( 53) TGACTCAG 1 chr1:87459174-87459254 ( 34) TGACTCAG 1 chr2:17304340-17304420 ( 9) TGAGTCAA 1 chr8:125860450-125860530 ( 64) TGAGTCAA 1 chr17:61538276-61538356 ( 38) TGAGTCAA 1 chr14:81868471-81868551 ( 41) TGACTCAA 1 chr7:127478182-127478262 ( 34) TGACTCAA 1 chr2:219287338-219287418 ( 41) TGACTCAA 1 chr1:169281606-169281686 ( 27) TGATTCAT 1 chr6:130173552-130173632 ( 29) TGATTCAT 1 chr3:45709701-45709781 ( 34) TGATTCAT 1 chr2:172081880-172081960 ( 22) TTAGTCAT 1 chr10:62042749-62042829 ( 32) TTAGTCAT 1 chr3:99544245-99544325 ( 34) TTAGTCAT 1 chr19:32864816-32864896 ( 57) TTAGTCAC 1 chr7:127624028-127624108 ( 42) TTAGTCAC 1 chr7:73265984-73266064 ( 47) TGACTAAT 1 chr6:138235825-138235905 ( 43) TGAATCAT 1 chr3:183075635-183075715 ( 36) TGAGTAAC 1 chr8:129162336-129162416 ( 21) TGAATCAC 1 chr22:26800986-26801066 ( 48) TGAGCCAT 1 chr2:98527961-98528041 ( 39) TCACTCAT 1 chr9:108438725-108438805 ( 64) TGACCCAC 1 chr6:43979883-43979963 ( 26) TGAGTTAT 1 chr3:47388917-47388997 ( 33) TCAGTCAC 1 chr1:203576497-203576577 ( 45) TGAGTTAT 1 chr2:38591498-38591578 ( 43) TGAGTAAG 1 chr8:74284033-74284113 ( 33) TGACTAAG 1 chr12:112811449-11281152 ( 46) TGACTAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.04883 E= 2.5e-243 -1407 -1407 -1407 194 -1407 -431 204 -317 186 -1407 -1407 -1407 -456 96 117 -390 -1407 -431 -1407 192 -324 206 -1407 -449 186 -1407 -1407 -1407 -298 65 -152 100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 172 E= 2.5e-243 0.000000 0.000000 0.000000 1.000000 0.000000 0.011628 0.959302 0.029070 1.000000 0.000000 0.000000 0.000000 0.011628 0.447674 0.523256 0.017442 0.000000 0.011628 0.000000 0.988372 0.029070 0.959302 0.000000 0.011628 1.000000 0.000000 0.000000 0.000000 0.034884 0.360465 0.081395 0.523256 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 regular expression -------------------------------------------------------------------------------- TGA[GC]TCA[TC] -------------------------------------------------------------------------------- Time 4.77 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATAAGR MEME-2 width = 8 sites = 72 llr = 542 E-value = 1.5e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAAGR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8:a1aa35 pos.-specific C ::::::12 probability G :a::::62 matrix T 2::9:::1 bits 2.1 * 1.9 ** * 1.7 ** ** 1.5 ** ** Relative 1.3 ***** Entropy 1.1 ****** (10.9 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AGATAAGA consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:114347496-114347576 53 2.23e-05 AAAAAAAATG AGATAAGA AAGATGACTC chr3:23947706-23947786 11 2.23e-05 gtgGCACAGT AGATAAGA GGACACAGAG chr1:35602541-35602621 32 2.23e-05 tggggcaaag agataaga ggttggggca chr3:133662526-133662606 40 2.23e-05 AAGTTAACAA AGATAAGa aaaccacaga chr2:100907709-100907789 42 2.23e-05 tcctgtccaC AGATAAGA GCCTCCTTGA chr6:144126111-144126191 16 2.23e-05 ctggttttcc agataaga aaattggggt chr1:44514072-44514152 50 2.23e-05 ATGGGAAGGA AGATAAGA ACAGATGAGT chr4:129566578-129566658 53 2.23e-05 tgggacacag agataaga ggtcggggca chr5:37672410-37672490 56 2.23e-05 cttgtggttg agataaga ggaaggcctc chr18:9005604-9005684 44 2.23e-05 TGCAGGACAG AGATAAGA AGCAGTGAGT chr3:33984155-33984235 44 2.23e-05 TGGTGCGATT AGATAAGA GATGAGTCAT chr2:202652352-202652432 6 2.23e-05 agata agataaga gccagtagat chr12:6748490-6748570 63 4.12e-05 TGGTAATGGT AGATAAGG GAAGGGGGAA chr16:58010511-58010591 8 4.12e-05 GCCCTAC AGATAAGG TAGCTGCTAT chr12:104802482-10480256 54 4.12e-05 TCGGGGttag agataagg aagctaggct chr11:119465587-11946566 60 4.12e-05 TGTTTTAGTC AGATAAGG AACATGCAGA chr8:142036931-142037011 40 4.12e-05 gccatgggag agataagg ttatgagtaa chr10:25782242-25782322 55 5.98e-05 TGCACCACTC AGATAAGC CCCATGCTGC chr20:33301353-33301433 20 5.98e-05 GGAAGAGGGG AGATAAGC TTACTGGGAA chr14:81868471-81868551 65 5.98e-05 TGCTTAAGGG AGATAAGC CTTCCTCA chr22:41107693-41107773 41 5.98e-05 atctaaaccg agataagc tgcagtgcag chr4:87863502-87863582 39 5.98e-05 AGTGAGTCAC AGATAAGC AATAAACATT chr8:66629735-66629815 52 5.98e-05 AGTCATTAGT AGATAAGC TCGGACTGAG chr14:54902359-54902439 58 8.61e-05 TGCAAACCAA AGATAAAA CTAGATATGG chr1:62174819-62174899 69 8.61e-05 ACAAGCAAAA AGATAAAA GATA chr3:65016697-65016777 27 8.61e-05 tcaagactgg agataaaa ccatgagtca chr4:170525866-170525946 47 1.28e-04 agcactgatg agataagt atgactcatg chr6:28514929-28515009 29 1.28e-04 ctgcacagca agataagt aatcagcaga chr15:35849812-35849892 22 1.28e-04 TTTGTTGGGT AGATAAGT GAAGAAGATG chr2:69828423-69828503 61 1.28e-04 GAGAGTTGTC TGATAAGA TAAGTCTGTA chr1:117300843-117300923 40 1.28e-04 GGGCAGGGAG TGATAAGA AGGGAAAAGA chr3:183075635-183075715 46 1.28e-04 tgagtaacag tgataaga aaaagaggaa chr12:95910709-95910789 49 1.73e-04 TCTCCAAATA AGATAAAG TTAGCAGCAA chr6:119578334-119578414 7 1.73e-04 GACAAG AGATAAAG CAAAAGGGAA chrX:65370186-65370266 29 1.73e-04 AAGGAAGGAA AGATAACA TGCCATGTGA chr19:33488124-33488204 71 1.73e-04 tgggcactag agataaag ca chr22:31624025-31624105 26 1.73e-04 AGAGACAGAA AGATAACA TATGTACACA chr1:153031903-153031983 21 1.73e-04 TCACTGTGTG AGATAACA CAGTCTGAGT chr20:33708107-33708187 28 1.73e-04 tgaagtgttg agataaca ggcgtgagtc chr1:32773083-32773163 64 1.73e-04 tggatatgcc agataaag ggatgattc chr6:45262225-45262305 12 1.73e-04 caagagaaag agataaag ggcatccaca chr2:38591498-38591578 26 1.95e-04 TGTGTTGCAG AGATAAAC TCAAAGTGAT chr1:8686596-8686676 44 1.95e-04 tccaatccta agataaac ccctctctga chr3:139058298-139058378 49 1.95e-04 GGAAAATTGG AGATAAAC TGATAACTCC chr1:39583044-39583124 36 1.95e-04 GACTCTTATC AGATAAAC TTGCCATGAG chr7:92072201-92072281 5 2.13e-04 ctac tgataagg gtccaacaaa chr2:12080464-12080544 17 2.13e-04 TGTTAAGAAC TGATAAGG AATGATAGAA chr8:126193325-126193405 45 2.13e-04 TGCAGCAAAG TGATAAGG CAGCAGCTTG chr2:159986927-159987007 35 2.13e-04 GGATCTCTGT TGATAAGG ACTGTGGCTG chr3:38191325-38191405 64 2.49e-04 TTAGGGAAGT TGATAAGC ACAGTAGTA chr2:17304340-17304420 51 2.67e-04 tgtcacagcc agataacc ctcacatccT chr1:27400848-27400928 7 3.17e-04 AACAGA TGATAAAA TATGAGTCAT chr4:80599731-80599811 5 3.17e-04 CTAC TGATAAAA ATTTCAGCAC chr6:161223152-161223232 64 3.17e-04 ctgctcactg agataaat gcatatctg chr9:130841407-130841487 42 3.17e-04 AAGTTTGAGG AGATAAAT CATGACTCAT chr6:34713326-34713406 19 3.41e-04 TATCTATCTA AGAAAAGA CATTTCAAGA chr17:61538276-61538356 24 3.41e-04 AGGCAATAGG AGAAAAGA CAGATATGAG chr5:74862817-74862897 14 3.41e-04 TGATGTAGAA AGAAAAGA GTTCAGACAA chr5:34924195-34924275 52 3.41e-04 CTCATTCAGG AGAAAAGA GGAGGTGACT chr2:119560725-119560805 31 4.24e-04 AGGGTGGAAG TGATAAAG ATGACTCATA chr1:205703667-205703747 19 4.24e-04 AAAAGATCTG TGATAACA AGGGCCATTC chr1:172903166-172903246 56 4.24e-04 CATGCTGGCC AGATAACT ATCAGAAGGA chr7:29686814-29686894 29 4.24e-04 tgcatccttt agataact gccactctgg chr21:40159615-40159695 14 4.24e-04 TTCTCCCGCC TGATAACA TCTAAATGAC chr12:112811449-11281152 67 4.24e-04 ATGCACCAGA AGATAACT AGGggc chr3:5236558-5236638 42 4.64e-04 TTGTCTATGG TGATAAAC CTGAATCTCA chr3:4940412-4940492 60 4.64e-04 TCAAACCGGT AGAGAAGA TTCAATCTGA chr2:98527961-98528041 16 4.84e-04 TGAAGTCTAC AGAAAAGG AACTCAGGAC chr9:37953852-37953932 31 5.41e-04 AATCGTGGGG AGATGAGA CGATGGGGGA chr12:104198879-10419895 49 5.41e-04 gatctgaatg agatgaga ggaatgagac chr6:113277979-113278059 68 6.03e-04 TTTCTTGGAA AGAGAAGG CTGGC chr1:169281606-169281686 9 7.27e-04 tcactgtg agagaaaa ccacaaggta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:114347496-114347576 2.2e-05 52_[+2]_20 chr3:23947706-23947786 2.2e-05 10_[+2]_62 chr1:35602541-35602621 2.2e-05 31_[+2]_41 chr3:133662526-133662606 2.2e-05 39_[+2]_33 chr2:100907709-100907789 2.2e-05 41_[+2]_31 chr6:144126111-144126191 2.2e-05 15_[+2]_57 chr1:44514072-44514152 2.2e-05 49_[+2]_23 chr4:129566578-129566658 2.2e-05 52_[+2]_20 chr5:37672410-37672490 2.2e-05 55_[+2]_17 chr18:9005604-9005684 2.2e-05 43_[+2]_29 chr3:33984155-33984235 2.2e-05 43_[+2]_29 chr2:202652352-202652432 2.2e-05 5_[+2]_67 chr12:6748490-6748570 4.1e-05 62_[+2]_10 chr16:58010511-58010591 4.1e-05 7_[+2]_65 chr12:104802482-10480256 4.1e-05 53_[+2]_19 chr11:119465587-11946566 4.1e-05 59_[+2]_13 chr8:142036931-142037011 4.1e-05 39_[+2]_33 chr10:25782242-25782322 6e-05 54_[+2]_18 chr20:33301353-33301433 6e-05 19_[+2]_53 chr14:81868471-81868551 6e-05 64_[+2]_8 chr22:41107693-41107773 6e-05 40_[+2]_32 chr4:87863502-87863582 6e-05 38_[+2]_34 chr8:66629735-66629815 6e-05 51_[+2]_21 chr14:54902359-54902439 8.6e-05 57_[+2]_15 chr1:62174819-62174899 8.6e-05 68_[+2]_4 chr3:65016697-65016777 8.6e-05 26_[+2]_46 chr4:170525866-170525946 0.00013 46_[+2]_26 chr6:28514929-28515009 0.00013 28_[+2]_44 chr15:35849812-35849892 0.00013 21_[+2]_51 chr2:69828423-69828503 0.00013 60_[+2]_12 chr1:117300843-117300923 0.00013 39_[+2]_33 chr3:183075635-183075715 0.00013 45_[+2]_27 chr12:95910709-95910789 0.00017 48_[+2]_24 chr6:119578334-119578414 0.00017 6_[+2]_66 chrX:65370186-65370266 0.00017 28_[+2]_44 chr19:33488124-33488204 0.00017 70_[+2]_2 chr22:31624025-31624105 0.00017 25_[+2]_47 chr1:153031903-153031983 0.00017 20_[+2]_52 chr20:33708107-33708187 0.00017 27_[+2]_45 chr1:32773083-32773163 0.00017 63_[+2]_9 chr6:45262225-45262305 0.00017 11_[+2]_61 chr2:38591498-38591578 0.00019 25_[+2]_47 chr1:8686596-8686676 0.00019 43_[+2]_29 chr3:139058298-139058378 0.00019 48_[+2]_24 chr1:39583044-39583124 0.00019 35_[+2]_37 chr7:92072201-92072281 0.00021 4_[+2]_68 chr2:12080464-12080544 0.00021 16_[+2]_56 chr8:126193325-126193405 0.00021 44_[+2]_28 chr2:159986927-159987007 0.00021 34_[+2]_38 chr3:38191325-38191405 0.00025 63_[+2]_9 chr2:17304340-17304420 0.00027 50_[+2]_22 chr1:27400848-27400928 0.00032 6_[+2]_66 chr4:80599731-80599811 0.00032 4_[+2]_68 chr6:161223152-161223232 0.00032 63_[+2]_9 chr9:130841407-130841487 0.00032 41_[+2]_31 chr6:34713326-34713406 0.00034 18_[+2]_54 chr17:61538276-61538356 0.00034 23_[+2]_49 chr5:74862817-74862897 0.00034 13_[+2]_59 chr5:34924195-34924275 0.00034 51_[+2]_21 chr2:119560725-119560805 0.00042 30_[+2]_42 chr1:205703667-205703747 0.00042 18_[+2]_54 chr1:172903166-172903246 0.00042 55_[+2]_17 chr7:29686814-29686894 0.00042 28_[+2]_44 chr21:40159615-40159695 0.00042 13_[+2]_59 chr12:112811449-11281152 0.00042 66_[+2]_6 chr3:5236558-5236638 0.00046 41_[+2]_31 chr3:4940412-4940492 0.00046 59_[+2]_13 chr2:98527961-98528041 0.00048 15_[+2]_57 chr9:37953852-37953932 0.00054 30_[+2]_42 chr12:104198879-10419895 0.00054 48_[+2]_24 chr6:113277979-113278059 0.0006 67_[+2]_5 chr1:169281606-169281686 0.00073 8_[+2]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAAGR width=8 seqs=72 chr1:114347496-114347576 ( 53) AGATAAGA 1 chr3:23947706-23947786 ( 11) AGATAAGA 1 chr1:35602541-35602621 ( 32) AGATAAGA 1 chr3:133662526-133662606 ( 40) AGATAAGA 1 chr2:100907709-100907789 ( 42) AGATAAGA 1 chr6:144126111-144126191 ( 16) AGATAAGA 1 chr1:44514072-44514152 ( 50) AGATAAGA 1 chr4:129566578-129566658 ( 53) AGATAAGA 1 chr5:37672410-37672490 ( 56) AGATAAGA 1 chr18:9005604-9005684 ( 44) AGATAAGA 1 chr3:33984155-33984235 ( 44) AGATAAGA 1 chr2:202652352-202652432 ( 6) AGATAAGA 1 chr12:6748490-6748570 ( 63) AGATAAGG 1 chr16:58010511-58010591 ( 8) AGATAAGG 1 chr12:104802482-10480256 ( 54) AGATAAGG 1 chr11:119465587-11946566 ( 60) AGATAAGG 1 chr8:142036931-142037011 ( 40) AGATAAGG 1 chr10:25782242-25782322 ( 55) AGATAAGC 1 chr20:33301353-33301433 ( 20) AGATAAGC 1 chr14:81868471-81868551 ( 65) AGATAAGC 1 chr22:41107693-41107773 ( 41) AGATAAGC 1 chr4:87863502-87863582 ( 39) AGATAAGC 1 chr8:66629735-66629815 ( 52) AGATAAGC 1 chr14:54902359-54902439 ( 58) AGATAAAA 1 chr1:62174819-62174899 ( 69) AGATAAAA 1 chr3:65016697-65016777 ( 27) AGATAAAA 1 chr4:170525866-170525946 ( 47) AGATAAGT 1 chr6:28514929-28515009 ( 29) AGATAAGT 1 chr15:35849812-35849892 ( 22) AGATAAGT 1 chr2:69828423-69828503 ( 61) TGATAAGA 1 chr1:117300843-117300923 ( 40) TGATAAGA 1 chr3:183075635-183075715 ( 46) TGATAAGA 1 chr12:95910709-95910789 ( 49) AGATAAAG 1 chr6:119578334-119578414 ( 7) AGATAAAG 1 chrX:65370186-65370266 ( 29) AGATAACA 1 chr19:33488124-33488204 ( 71) AGATAAAG 1 chr22:31624025-31624105 ( 26) AGATAACA 1 chr1:153031903-153031983 ( 21) AGATAACA 1 chr20:33708107-33708187 ( 28) AGATAACA 1 chr1:32773083-32773163 ( 64) AGATAAAG 1 chr6:45262225-45262305 ( 12) AGATAAAG 1 chr2:38591498-38591578 ( 26) AGATAAAC 1 chr1:8686596-8686676 ( 44) AGATAAAC 1 chr3:139058298-139058378 ( 49) AGATAAAC 1 chr1:39583044-39583124 ( 36) AGATAAAC 1 chr7:92072201-92072281 ( 5) TGATAAGG 1 chr2:12080464-12080544 ( 17) TGATAAGG 1 chr8:126193325-126193405 ( 45) TGATAAGG 1 chr2:159986927-159987007 ( 35) TGATAAGG 1 chr3:38191325-38191405 ( 64) TGATAAGC 1 chr2:17304340-17304420 ( 51) AGATAACC 1 chr1:27400848-27400928 ( 7) TGATAAAA 1 chr4:80599731-80599811 ( 5) TGATAAAA 1 chr6:161223152-161223232 ( 64) AGATAAAT 1 chr9:130841407-130841487 ( 42) AGATAAAT 1 chr6:34713326-34713406 ( 19) AGAAAAGA 1 chr17:61538276-61538356 ( 24) AGAAAAGA 1 chr5:74862817-74862897 ( 14) AGAAAAGA 1 chr5:34924195-34924275 ( 52) AGAAAAGA 1 chr2:119560725-119560805 ( 31) TGATAAAG 1 chr1:205703667-205703747 ( 19) TGATAACA 1 chr1:172903166-172903246 ( 56) AGATAACT 1 chr7:29686814-29686894 ( 29) AGATAACT 1 chr21:40159615-40159695 ( 14) TGATAACA 1 chr12:112811449-11281152 ( 67) AGATAACT 1 chr3:5236558-5236638 ( 42) TGATAAAC 1 chr3:4940412-4940492 ( 60) AGAGAAGA 1 chr2:98527961-98528041 ( 16) AGAAAAGG 1 chr9:37953852-37953932 ( 31) AGATGAGA 1 chr12:104198879-10419895 ( 49) AGATGAGA 1 chr6:113277979-113278059 ( 68) AGAGAAGG 1 chr1:169281606-169281686 ( 9) AGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.38792 E= 1.5e-018 155 -1281 -1281 -42 -1281 -1281 210 -1281 186 -1281 -1281 -1281 -199 -1281 -248 177 182 -1281 -307 -1281 186 -1281 -1281 -1281 -6 -73 136 -1281 78 -35 2 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 1.5e-018 0.805556 0.000000 0.000000 0.194444 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.069444 0.000000 0.041667 0.888889 0.972222 0.000000 0.027778 0.000000 1.000000 0.000000 0.000000 0.000000 0.263889 0.138889 0.597222 0.000000 0.472222 0.180556 0.236111 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-2 regular expression -------------------------------------------------------------------------------- AGATAA[GA][AG] -------------------------------------------------------------------------------- Time 8.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCWB MEME-3 width = 8 sites = 61 llr = 477 E-value = 6.0e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::a::41 pos.-specific C 6::::a:3 probability G 2::::::3 matrix T 1aa:a:62 bits 2.1 * 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.3 bits) 0.8 ****** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTTATCTG consensus AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:130700016-130700096 9 3.13e-05 TTAAATTT CTTATCTC TGCCAAACAG chr9:108409957-108410037 16 3.13e-05 AGGCTGCACT CTTATCTG CTGCCCACAG chr3:196758475-196758555 46 3.13e-05 AAGTTCTTCC CTTATCTC TTGGGTGTCA chr3:16351263-16351343 35 3.13e-05 acctgctttc cttatctg tcgctgtggg chr11:118482013-11848209 30 3.13e-05 cacctctctc cttatctc tccctttact chr1:245126910-245126990 33 3.13e-05 GACTCATCtt cttatctc cattttacag chr1:62174819-62174899 10 3.13e-05 aagcaagac cttatctc aaaaaccaaa chr5:132576340-132576420 8 3.13e-05 GGAGGCC CTTATCTC TTAGCGCATG chr3:4573242-4573322 43 3.13e-05 acctctcagc cttatctg cagtaactcc chr8:74284033-74284113 15 3.13e-05 AGGCCCTACC CTTATCTC CCATTCAGCA chr6:26756731-26756811 2 3.13e-05 t cttatctc aactgcaaag chr10:80218910-80218990 15 3.13e-05 CCTCCCTCCA CTTATCTC TGTTTGAACA chrX:14083162-14083242 9 3.13e-05 GGCAATTC CTTATCTG AAGCGCCTTG chr1:67420673-67420753 53 3.13e-05 AGTCACACTT CTTATCTG TATATCCAGG chr5:174945002-174945082 41 3.13e-05 CCCCCTACGC CTTATCTC TCCCCAAGTG chr3:19979186-19979266 40 8.18e-05 AGTCACTCAC CTTATCAC TTCTCTCTCT chr2:170870542-170870622 14 8.18e-05 CACAGATGCC CTTATCAG CAGCAACCAG chr19:55471364-55471444 16 8.18e-05 ATTGTGGTTT CTTATCAG TTCATCCGAT chr9:125209216-125209296 29 8.18e-05 aaggaaatca cttatctt ctaacaataa chr19:40922959-40923039 13 8.18e-05 GTTGTGAATT CTTATCAC GAATGgtgtg chr2:170521632-170521712 38 8.18e-05 caggagcctt cttatcag cctgtacaga chr10:66268028-66268108 26 8.18e-05 AATAGCACTT CTTATCTT TGTTCCGTTG chr9:108438725-108438805 6 8.18e-05 AACCC CTTATCAG TCTCTTGCAG chr17:39686559-39686639 31 8.18e-05 GAGTCATTCC CTTATCAG GCACTGATGA chr1:42335958-42336038 58 8.18e-05 TCACATTCGA CTTATCAC TCTCTCTTTT chr4:187751132-187751212 61 8.18e-05 tgactcattc cttatcag ctcatgaaat chr7:116105990-116106070 31 8.18e-05 CTCATCCTTT CTTATCTT CTTTTTCCAC chr1:87459174-87459254 6 8.18e-05 GCATT CTTATCAG TAAGATACAT chr7:107915040-107915120 19 8.18e-05 gcggaagttg cttatcag cttaacgaga chr7:143189223-143189303 29 8.18e-05 tcatcatgac cttatcag gggagttttc chr10:13446416-13446496 30 1.00e-04 ATTAAAACTG CTTATCAT CTTAAGTTTT chr8:61242936-61243016 54 1.00e-04 ctgaaccaac cttatcat actagtgcac chr7:29686814-29686894 54 1.19e-04 tggtcactat cttatcta caacctcatg chr11:44291707-44291787 62 1.51e-04 GGAGATGTGG GTTATCTG GGGAAGACAG chr1:10571242-10571322 61 1.51e-04 tttttatttt gttatctc ctgttttttc chr16:75658884-75658964 31 1.51e-04 catgttcctt gttatctc ccttccctta chr10:25782242-25782322 37 1.86e-04 TCCAGCCAAG TTTATCTC TGCACCACTC chr6:26026036-26026116 9 1.86e-04 agcattta tttatctg ctgatgactc chr2:202652352-202652432 61 1.86e-04 gaactaaggg tttatctg agtgatacag chr8:125860450-125860530 21 2.06e-04 TTTTTCATGG CTTATCAA CACTCCCTTC chr2:11893793-11893873 16 2.06e-04 ATTCATCACC CTTATCAA CCGCCGTTAA chr4:75375242-75375322 51 2.94e-04 agaaaacccc attatctc agcctcaaat chr6:90754737-90754817 67 2.94e-04 GAAGGAAACT GTTATCAG GTTGAT chr3:23947706-23947786 62 2.94e-04 AAAAAAATAG ATTATCTG ATGGAGCTGA chr1:28827628-28827708 19 2.94e-04 AGTACTTCAT GTTATCTT TTCCAGCAAG chr5:70681186-70681266 42 2.94e-04 ACGATTTCAC GTTATCAG TGCAGTTCGG chr6:130160776-130160856 5 2.94e-04 tcaa attatctc tgtttgcaga chr1:52035548-52035628 39 2.94e-04 caaaatgagt attatctc cactttacaa chr12:45667754-45667834 65 3.52e-04 atgatgctac tttatctt gattctgc chr6:126267573-126267653 26 3.52e-04 gcacagactg tttatctt tggtatcagt chr3:43812271-43812351 41 3.52e-04 GCTCGAGTTC TTTATCAG GCTGTGACAG chr1:38999690-38999770 9 3.52e-04 tttcactt tttatctt tTGAAGGCAC chr2:17304340-17304420 22 4.31e-04 gtcaaccctg gttatcat ggggtgacag chr2:12080464-12080544 65 4.31e-04 ATACTGTGAC ATTATCTT GATTGAGA chr8:126676805-126676885 44 4.31e-04 TGTCATTCCT ATTATCTT ATTTACCCAT chr6:27741795-27741875 55 4.71e-04 cactggttat gttatcta tagtttccag chr6:130173552-130173632 38 4.71e-04 atgattcatc tttatCAT TGGAGCACAG chr3:183075635-183075715 71 4.92e-04 gaagcttatg tttatcta ta chr2:98527961-98528041 71 5.14e-04 GGAGAAAAAA ATTATCAT GA chr5:176421980-176422060 48 5.56e-04 ttcagatagt gttatcaa ggctctgcca chr3:4940412-4940492 46 5.56e-04 CTCATCAGTT GTTATCAA ACCGGTAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:130700016-130700096 3.1e-05 8_[+3]_64 chr9:108409957-108410037 3.1e-05 15_[+3]_57 chr3:196758475-196758555 3.1e-05 45_[+3]_27 chr3:16351263-16351343 3.1e-05 34_[+3]_38 chr11:118482013-11848209 3.1e-05 29_[+3]_43 chr1:245126910-245126990 3.1e-05 32_[+3]_40 chr1:62174819-62174899 3.1e-05 9_[+3]_63 chr5:132576340-132576420 3.1e-05 7_[+3]_65 chr3:4573242-4573322 3.1e-05 42_[+3]_30 chr8:74284033-74284113 3.1e-05 14_[+3]_58 chr6:26756731-26756811 3.1e-05 1_[+3]_71 chr10:80218910-80218990 3.1e-05 14_[+3]_58 chrX:14083162-14083242 3.1e-05 8_[+3]_64 chr1:67420673-67420753 3.1e-05 52_[+3]_20 chr5:174945002-174945082 3.1e-05 40_[+3]_32 chr3:19979186-19979266 8.2e-05 39_[+3]_33 chr2:170870542-170870622 8.2e-05 13_[+3]_59 chr19:55471364-55471444 8.2e-05 15_[+3]_57 chr9:125209216-125209296 8.2e-05 28_[+3]_44 chr19:40922959-40923039 8.2e-05 12_[+3]_60 chr2:170521632-170521712 8.2e-05 37_[+3]_35 chr10:66268028-66268108 8.2e-05 25_[+3]_47 chr9:108438725-108438805 8.2e-05 5_[+3]_67 chr17:39686559-39686639 8.2e-05 30_[+3]_42 chr1:42335958-42336038 8.2e-05 57_[+3]_15 chr4:187751132-187751212 8.2e-05 60_[+3]_12 chr7:116105990-116106070 8.2e-05 30_[+3]_42 chr1:87459174-87459254 8.2e-05 5_[+3]_67 chr7:107915040-107915120 8.2e-05 18_[+3]_54 chr7:143189223-143189303 8.2e-05 28_[+3]_44 chr10:13446416-13446496 0.0001 29_[+3]_43 chr8:61242936-61243016 0.0001 53_[+3]_19 chr7:29686814-29686894 0.00012 53_[+3]_19 chr11:44291707-44291787 0.00015 61_[+3]_11 chr1:10571242-10571322 0.00015 60_[+3]_12 chr16:75658884-75658964 0.00015 30_[+3]_42 chr10:25782242-25782322 0.00019 36_[+3]_36 chr6:26026036-26026116 0.00019 8_[+3]_64 chr2:202652352-202652432 0.00019 60_[+3]_12 chr8:125860450-125860530 0.00021 20_[+3]_52 chr2:11893793-11893873 0.00021 15_[+3]_57 chr4:75375242-75375322 0.00029 50_[+3]_22 chr6:90754737-90754817 0.00029 66_[+3]_6 chr3:23947706-23947786 0.00029 61_[+3]_11 chr1:28827628-28827708 0.00029 18_[+3]_54 chr5:70681186-70681266 0.00029 41_[+3]_31 chr6:130160776-130160856 0.00029 4_[+3]_68 chr1:52035548-52035628 0.00029 38_[+3]_34 chr12:45667754-45667834 0.00035 64_[+3]_8 chr6:126267573-126267653 0.00035 25_[+3]_47 chr3:43812271-43812351 0.00035 40_[+3]_32 chr1:38999690-38999770 0.00035 8_[+3]_64 chr2:17304340-17304420 0.00043 21_[+3]_51 chr2:12080464-12080544 0.00043 64_[+3]_8 chr8:126676805-126676885 0.00043 43_[+3]_29 chr6:27741795-27741875 0.00047 54_[+3]_18 chr6:130173552-130173632 0.00047 37_[+3]_35 chr3:183075635-183075715 0.00049 70_[+3]_2 chr2:98527961-98528041 0.00051 70_[+3]_2 chr5:176421980-176422060 0.00056 47_[+3]_25 chr3:4940412-4940492 0.00056 45_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCWB width=8 seqs=61 chrX:130700016-130700096 ( 9) CTTATCTC 1 chr9:108409957-108410037 ( 16) CTTATCTG 1 chr3:196758475-196758555 ( 46) CTTATCTC 1 chr3:16351263-16351343 ( 35) CTTATCTG 1 chr11:118482013-11848209 ( 30) CTTATCTC 1 chr1:245126910-245126990 ( 33) CTTATCTC 1 chr1:62174819-62174899 ( 10) CTTATCTC 1 chr5:132576340-132576420 ( 8) CTTATCTC 1 chr3:4573242-4573322 ( 43) CTTATCTG 1 chr8:74284033-74284113 ( 15) CTTATCTC 1 chr6:26756731-26756811 ( 2) CTTATCTC 1 chr10:80218910-80218990 ( 15) CTTATCTC 1 chrX:14083162-14083242 ( 9) CTTATCTG 1 chr1:67420673-67420753 ( 53) CTTATCTG 1 chr5:174945002-174945082 ( 41) CTTATCTC 1 chr3:19979186-19979266 ( 40) CTTATCAC 1 chr2:170870542-170870622 ( 14) CTTATCAG 1 chr19:55471364-55471444 ( 16) CTTATCAG 1 chr9:125209216-125209296 ( 29) CTTATCTT 1 chr19:40922959-40923039 ( 13) CTTATCAC 1 chr2:170521632-170521712 ( 38) CTTATCAG 1 chr10:66268028-66268108 ( 26) CTTATCTT 1 chr9:108438725-108438805 ( 6) CTTATCAG 1 chr17:39686559-39686639 ( 31) CTTATCAG 1 chr1:42335958-42336038 ( 58) CTTATCAC 1 chr4:187751132-187751212 ( 61) CTTATCAG 1 chr7:116105990-116106070 ( 31) CTTATCTT 1 chr1:87459174-87459254 ( 6) CTTATCAG 1 chr7:107915040-107915120 ( 19) CTTATCAG 1 chr7:143189223-143189303 ( 29) CTTATCAG 1 chr10:13446416-13446496 ( 30) CTTATCAT 1 chr8:61242936-61243016 ( 54) CTTATCAT 1 chr7:29686814-29686894 ( 54) CTTATCTA 1 chr11:44291707-44291787 ( 62) GTTATCTG 1 chr1:10571242-10571322 ( 61) GTTATCTC 1 chr16:75658884-75658964 ( 31) GTTATCTC 1 chr10:25782242-25782322 ( 37) TTTATCTC 1 chr6:26026036-26026116 ( 9) TTTATCTG 1 chr2:202652352-202652432 ( 61) TTTATCTG 1 chr8:125860450-125860530 ( 21) CTTATCAA 1 chr2:11893793-11893873 ( 16) CTTATCAA 1 chr4:75375242-75375322 ( 51) ATTATCTC 1 chr6:90754737-90754817 ( 67) GTTATCAG 1 chr3:23947706-23947786 ( 62) ATTATCTG 1 chr1:28827628-28827708 ( 19) GTTATCTT 1 chr5:70681186-70681266 ( 42) GTTATCAG 1 chr6:130160776-130160856 ( 5) ATTATCTC 1 chr1:52035548-52035628 ( 39) ATTATCTC 1 chr12:45667754-45667834 ( 65) TTTATCTT 1 chr6:126267573-126267653 ( 26) TTTATCTT 1 chr3:43812271-43812351 ( 41) TTTATCAG 1 chr1:38999690-38999770 ( 9) TTTATCTT 1 chr2:17304340-17304420 ( 22) GTTATCAT 1 chr2:12080464-12080544 ( 65) ATTATCTT 1 chr8:126676805-126676885 ( 44) ATTATCTT 1 chr6:27741795-27741875 ( 55) GTTATCTA 1 chr6:130173552-130173632 ( 38) TTTATCAT 1 chr3:183075635-183075715 ( 71) TTTATCTA 1 chr2:98527961-98528041 ( 71) ATTATCAT 1 chr5:176421980-176422060 ( 48) GTTATCAA 1 chr3:4940412-4940492 ( 46) GTTATCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 6.0e-017 -126 132 -51 -82 -1257 -1257 -1257 194 -1257 -1257 -1257 194 186 -1257 -1257 -1257 -1257 -1257 -1257 194 -1257 212 -1257 -1257 51 -1257 -1257 122 -126 44 56 -19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 6.0e-017 0.114754 0.573770 0.163934 0.147541 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.393443 0.000000 0.000000 0.606557 0.114754 0.311475 0.344262 0.229508 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 regular expression -------------------------------------------------------------------------------- CTTATC[TA][GCT] -------------------------------------------------------------------------------- Time 11.69 secs. ******************************************************************************** ******************************************************************************** MOTIF TGASTCAS MEME-4 width = 8 sites = 34 llr = 310 E-value = 1.6e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :::6:a:6 probability G :9:4:::3 matrix T a1::a::1 bits 2.1 * 1.9 * * *** 1.7 * * *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 ******* (13.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACTCAC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:99160649-99160729 16 1.46e-05 TTTGAAGGCA TGACTCAC TGTGAGTACA chr10:7070328-7070408 6 1.46e-05 tgcaa tgactcac taatgagtca chr19:48829371-48829451 21 1.46e-05 AGTCACCAGA TGACTCAC CAGGTCCCCC chr13:101045127-10104520 40 1.46e-05 CCCagggaag tgactcac ccagggaagg chr16:69564716-69564796 37 1.46e-05 ACTCACCGGA TGACTCAC TTCCTTGCCC chr9:125164835-125164915 4 1.46e-05 CCA TGACTCAC TTTTTCCACG chr9:37840716-37840796 54 1.46e-05 cctcactcac tgactcac ccagagcaac chr6:28047785-28047865 70 2.94e-05 tgctctgacc tgagtcac ctt chr19:4145843-4145923 63 2.94e-05 AATGGCCAAG TGAGTCAC ATCCCCTTAT chr1:42335958-42336038 44 2.94e-05 CCCCCTAGTA TGAGTCAC ATTCGACTTA chr1:172903166-172903246 25 2.94e-05 GAATGGAAGA TGAGTCAC AGCCATGCTG chr6:52382501-52382581 23 2.94e-05 GCATTCGCTC TGAGTCAC ACACACATGA chr4:87863502-87863582 31 2.94e-05 AGATAAGCAG TGAGTCAC AGATAAGCAA chr8:145992887-145992967 71 2.94e-05 CTTACAGGCA TGAGTCAC TG chr5:34924195-34924275 27 2.94e-05 GGTTAGATGA TGAGTCAC ACAGTGACTC chr3:195443022-195443102 27 4.42e-05 gaaaccctgt tgactcag gatgactcag chr1:8933788-8933868 50 4.42e-05 TCACAGATGG TGACTCAG CTCCGACTGG chr16:9141824-9141904 7 4.42e-05 AAATGA TGACTCAG CTCTGGGCCC chr9:124049462-124049542 22 4.42e-05 GGCCTCTGGG TGACTCAG CCCTGAGTCA chr8:38895804-38895884 47 4.42e-05 atttcctcac tgactcag tctgccagga chrX:119683932-119684012 20 4.42e-05 TCTTCTTAAT TGACTCAG CTACCAGTGA chr2:65233783-65233863 42 4.42e-05 gtaatctcaa tgactcag aaggctgagg chr3:39680946-39681026 55 5.92e-05 AGCAGGCCAG TGAGTCAG TTGGGCCCTG chr6:17715446-17715526 41 5.92e-05 GCCCCTTCAA TGAGTCAG CAGTGACTCA chr7:102632269-102632349 14 5.92e-05 ACAGGAAGCA TGAGTCAG GAATAAGTGG chr14:23005989-23006069 31 5.92e-05 GAAACAGGAA TGAGTCAG GCGTGAGTCA chr1:205703667-205703747 51 7.58e-05 TGACTCATAA TGACTCAT AATAATTTGG chr5:132576340-132576420 43 7.58e-05 TCTTCGCGCA TGACTCAT CTCTTTGTGC chr11:36171409-36171489 14 7.58e-05 CTGTTCCTCA TGACTCAT GTTCCTCATG chr18:20248074-20248154 24 7.58e-05 AGTCATGCAG TGACTCAT AGCATCATCA chr17:61538276-61538356 49 1.09e-04 GAGTCAAAGC TTACTCAC ATGTTCCTGG chr8:66629735-66629815 24 1.09e-04 GGGCTTCTGC TTACTCAC TTGCAAGGTG chr7:116105990-116106070 60 1.25e-04 ATAACCATCT TTAGTCAC TAATTCCCTA chr19:13842087-13842167 17 1.25e-04 CCTAATGGAA TTAGTCAC CACTGAGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:99160649-99160729 1.5e-05 15_[+4]_57 chr10:7070328-7070408 1.5e-05 5_[+4]_67 chr19:48829371-48829451 1.5e-05 20_[+4]_52 chr13:101045127-10104520 1.5e-05 39_[+4]_33 chr16:69564716-69564796 1.5e-05 36_[+4]_36 chr9:125164835-125164915 1.5e-05 3_[+4]_69 chr9:37840716-37840796 1.5e-05 53_[+4]_19 chr6:28047785-28047865 2.9e-05 69_[+4]_3 chr19:4145843-4145923 2.9e-05 62_[+4]_10 chr1:42335958-42336038 2.9e-05 43_[+4]_29 chr1:172903166-172903246 2.9e-05 24_[+4]_48 chr6:52382501-52382581 2.9e-05 22_[+4]_50 chr4:87863502-87863582 2.9e-05 30_[+4]_42 chr8:145992887-145992967 2.9e-05 70_[+4]_2 chr5:34924195-34924275 2.9e-05 26_[+4]_46 chr3:195443022-195443102 4.4e-05 26_[+4]_46 chr1:8933788-8933868 4.4e-05 49_[+4]_23 chr16:9141824-9141904 4.4e-05 6_[+4]_66 chr9:124049462-124049542 4.4e-05 21_[+4]_51 chr8:38895804-38895884 4.4e-05 46_[+4]_26 chrX:119683932-119684012 4.4e-05 19_[+4]_53 chr2:65233783-65233863 4.4e-05 41_[+4]_31 chr3:39680946-39681026 5.9e-05 54_[+4]_18 chr6:17715446-17715526 5.9e-05 40_[+4]_32 chr7:102632269-102632349 5.9e-05 13_[+4]_59 chr14:23005989-23006069 5.9e-05 30_[+4]_42 chr1:205703667-205703747 7.6e-05 50_[+4]_22 chr5:132576340-132576420 7.6e-05 42_[+4]_30 chr11:36171409-36171489 7.6e-05 13_[+4]_59 chr18:20248074-20248154 7.6e-05 23_[+4]_49 chr17:61538276-61538356 0.00011 48_[+4]_24 chr8:66629735-66629815 0.00011 23_[+4]_49 chr7:116105990-116106070 0.00013 59_[+4]_13 chr19:13842087-13842167 0.00013 16_[+4]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAS width=8 seqs=34 chr7:99160649-99160729 ( 16) TGACTCAC 1 chr10:7070328-7070408 ( 6) TGACTCAC 1 chr19:48829371-48829451 ( 21) TGACTCAC 1 chr13:101045127-10104520 ( 40) TGACTCAC 1 chr16:69564716-69564796 ( 37) TGACTCAC 1 chr9:125164835-125164915 ( 4) TGACTCAC 1 chr9:37840716-37840796 ( 54) TGACTCAC 1 chr6:28047785-28047865 ( 70) TGAGTCAC 1 chr19:4145843-4145923 ( 63) TGAGTCAC 1 chr1:42335958-42336038 ( 44) TGAGTCAC 1 chr1:172903166-172903246 ( 25) TGAGTCAC 1 chr6:52382501-52382581 ( 23) TGAGTCAC 1 chr4:87863502-87863582 ( 31) TGAGTCAC 1 chr8:145992887-145992967 ( 71) TGAGTCAC 1 chr5:34924195-34924275 ( 27) TGAGTCAC 1 chr3:195443022-195443102 ( 27) TGACTCAG 1 chr1:8933788-8933868 ( 50) TGACTCAG 1 chr16:9141824-9141904 ( 7) TGACTCAG 1 chr9:124049462-124049542 ( 22) TGACTCAG 1 chr8:38895804-38895884 ( 47) TGACTCAG 1 chrX:119683932-119684012 ( 20) TGACTCAG 1 chr2:65233783-65233863 ( 42) TGACTCAG 1 chr3:39680946-39681026 ( 55) TGAGTCAG 1 chr6:17715446-17715526 ( 41) TGAGTCAG 1 chr7:102632269-102632349 ( 14) TGAGTCAG 1 chr14:23005989-23006069 ( 31) TGAGTCAG 1 chr1:205703667-205703747 ( 51) TGACTCAT 1 chr5:132576340-132576420 ( 43) TGACTCAT 1 chr11:36171409-36171489 ( 14) TGACTCAT 1 chr18:20248074-20248154 ( 24) TGACTCAT 1 chr17:61538276-61538356 ( 49) TTACTCAC 1 chr8:66629735-66629815 ( 24) TTACTCAC 1 chr7:116105990-116106070 ( 60) TTAGTCAC 1 chr19:13842087-13842167 ( 17) TTAGTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4321 E= 1.6e-013 -1173 -1173 -1173 194 -1173 -1173 192 -115 186 -1173 -1173 -1173 -1173 135 82 -1173 -1173 -1173 -1173 194 -1173 212 -1173 -1173 186 -1173 -1173 -1173 -1173 128 47 -115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.6e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.882353 0.117647 1.000000 0.000000 0.000000 0.000000 0.000000 0.588235 0.411765 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.558824 0.323529 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAS MEME-4 regular expression -------------------------------------------------------------------------------- TGA[CG]TCA[CG] -------------------------------------------------------------------------------- Time 15.03 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGGAAG MEME-5 width = 8 sites = 16 llr = 163 E-value = 3.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGGAAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a::9a: pos.-specific C :1:::1:: probability G :9:aa1:a matrix T :::::::: bits 2.1 ** * 1.9 * *** ** 1.7 * *** ** 1.5 ***** ** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGGAAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGAAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:119578334-119578414 24 1.69e-05 GCAAAAGGGA AGAGGAAG TGCTTTTCAT chr20:33301353-33301433 7 1.69e-05 TATGGG AGAGGAAG AGGGGAGATA chr22:31624025-31624105 53 1.69e-05 AAATACATAA AGAGGAAG TAGACACGTT chr1:245126910-245126990 72 1.69e-05 gatgttacag agaggaag t chr1:117300843-117300923 55 1.69e-05 AGAAGGGAAA AGAGGAAG CTGGCTTGGG chr3:183075635-183075715 57 1.69e-05 gataagaaaa agaggaag cttatgttta chr8:41650013-41650093 68 1.69e-05 AGGGAAAATA AGAGGAAG TGACT chr5:37672410-37672490 34 1.69e-05 gattagtaaa agaggaag tcctcttgtg chr6:28655534-28655614 57 1.69e-05 gattagtaaa agaggaag tcctctttgc chr6:45262225-45262305 37 1.69e-05 acatcagtaa agaggaag tcaaactgtt chr7:143189223-143189303 47 1.69e-05 gggagttttc agaggaag cttgatgaag chr7:106317092-106317172 4 1.69e-05 aaa agaggaag tcaaattgtc chr6:130173552-130173632 19 3.35e-05 acactgccag acaggaag tatgattcat chr7:102632269-102632349 4 3.35e-05 AAG ACAGGAAG CATGAGTCAG chr11:10921214-10921294 27 6.19e-05 TGGGGGAGAC AGAGGCAG ATGAGTCACA chr1:21965241-21965321 70 6.19e-05 catcaccttg agagggag gta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGAAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:119578334-119578414 1.7e-05 23_[+5]_49 chr20:33301353-33301433 1.7e-05 6_[+5]_66 chr22:31624025-31624105 1.7e-05 52_[+5]_20 chr1:245126910-245126990 1.7e-05 71_[+5]_1 chr1:117300843-117300923 1.7e-05 54_[+5]_18 chr3:183075635-183075715 1.7e-05 56_[+5]_16 chr8:41650013-41650093 1.7e-05 67_[+5]_5 chr5:37672410-37672490 1.7e-05 33_[+5]_39 chr6:28655534-28655614 1.7e-05 56_[+5]_16 chr6:45262225-45262305 1.7e-05 36_[+5]_36 chr7:143189223-143189303 1.7e-05 46_[+5]_26 chr7:106317092-106317172 1.7e-05 3_[+5]_69 chr6:130173552-130173632 3.3e-05 18_[+5]_54 chr7:102632269-102632349 3.3e-05 3_[+5]_69 chr11:10921214-10921294 6.2e-05 26_[+5]_46 chr1:21965241-21965321 6.2e-05 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGAAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGGAAG width=8 seqs=16 chr6:119578334-119578414 ( 24) AGAGGAAG 1 chr20:33301353-33301433 ( 7) AGAGGAAG 1 chr22:31624025-31624105 ( 53) AGAGGAAG 1 chr1:245126910-245126990 ( 72) AGAGGAAG 1 chr1:117300843-117300923 ( 55) AGAGGAAG 1 chr3:183075635-183075715 ( 57) AGAGGAAG 1 chr8:41650013-41650093 ( 68) AGAGGAAG 1 chr5:37672410-37672490 ( 34) AGAGGAAG 1 chr6:28655534-28655614 ( 57) AGAGGAAG 1 chr6:45262225-45262305 ( 37) AGAGGAAG 1 chr7:143189223-143189303 ( 47) AGAGGAAG 1 chr7:106317092-106317172 ( 4) AGAGGAAG 1 chr6:130173552-130173632 ( 19) ACAGGAAG 1 chr7:102632269-102632349 ( 4) ACAGGAAG 1 chr11:10921214-10921294 ( 27) AGAGGCAG 1 chr1:21965241-21965321 ( 70) AGAGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGAAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 3.6e-003 186 -1064 -1064 -1064 -1064 -88 191 -1064 186 -1064 -1064 -1064 -1064 -1064 210 -1064 -1064 -1064 210 -1064 167 -188 -190 -1064 186 -1064 -1064 -1064 -1064 -1064 210 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGAAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.062500 0.062500 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGAAG MEME-5 regular expression -------------------------------------------------------------------------------- AGAGGAAG -------------------------------------------------------------------------------- Time 18.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:150481818-150481898 9.61e-01 80 chr7:26890128-26890208 1.22e-04 19_[+1(1.68e-05)]_53 chr1:4067157-4067237 2.73e-01 80 chr9:37840716-37840796 1.54e-03 34_[+4(1.46e-05)]_11_[+4(1.46e-05)]_\ 19 chr1:52035548-52035628 1.01e-04 65_[+1(1.68e-05)]_7 chr11:107436811-10743689 5.93e-03 60_[+1(1.68e-05)]_12 chr2:47478241-47478321 3.96e-03 46_[+4(1.46e-05)]_26 chr8:126676805-126676885 6.92e-04 22_[+4(2.94e-05)]_50 chr12:112811449-11281152 1.11e-02 80 chr19:13842087-13842167 4.97e-03 27_[+1(1.68e-05)]_45 chr5:174945002-174945082 6.72e-05 18_[+1(3.34e-05)]_14_[+3(3.13e-05)]_\ 32 chr2:202652352-202652432 2.40e-04 [+2(2.23e-05)]_72 chr3:65016697-65016777 2.08e-05 26_[+2(8.61e-05)]_3_[+1(1.68e-05)]_\ 35 chr7:12991278-12991358 3.64e-04 38_[+1(1.68e-05)]_34 chr1:87901352-87901432 1.65e-01 80 chr6:136931567-136931647 6.10e-04 1_[+4(2.94e-05)]_71 chr2:65233783-65233863 8.70e-04 19_[+4(1.46e-05)]_14_[+4(4.42e-05)]_\ 31 chr12:104198879-10419895 8.75e-02 80 chr9:125164835-125164915 1.81e-03 3_[+4(1.46e-05)]_33_[+4(1.46e-05)]_\ 28 chrX:119683932-119684012 4.40e-03 19_[+4(4.42e-05)]_7_[+4(1.46e-05)]_\ 38 chr8:38895804-38895884 9.59e-04 30_[+1(3.34e-05)]_8_[+4(4.42e-05)]_\ 26 chr8:66629735-66629815 1.03e-04 39_[+1(1.68e-05)]_4_[+2(5.98e-05)]_\ 21 chr6:3912284-3912364 2.79e-04 31_[+4(2.94e-05)]_41 chr5:34924195-34924275 1.61e-05 26_[+4(2.94e-05)]_4_[+1(3.34e-05)]_\ 34 chr3:186816866-186816946 1.79e-03 41_[+1(3.34e-05)]_31 chr7:106317092-106317172 1.11e-03 3_[+5(1.69e-05)]_69 chr1:110473842-110473922 9.94e-01 80 chr6:130160776-130160856 2.02e-02 80 chr7:143189223-143189303 1.53e-07 14_[+1(1.68e-05)]_6_[+3(8.18e-05)]_\ 10_[+5(1.69e-05)]_26 chr9:124049462-124049542 3.02e-04 21_[+4(4.42e-05)]_3_[+4(2.94e-05)]_\ 40 chr6:10643530-10643610 5.51e-01 80 chr3:99544245-99544325 3.05e-04 80 chr6:10348134-10348214 4.21e-04 18_[+1(3.34e-05)]_54 chr18:20248074-20248154 3.34e-03 11_[+1(1.68e-05)]_4_[+1(3.34e-05)]_\ 49 chr19:9186424-9186504 5.76e-03 12_[+4(1.46e-05)]_60 chrX:65382306-65382386 3.55e-01 80 chr20:57199076-57199156 4.68e-03 19_[+4(2.94e-05)]_53 chr2:12317264-12317344 1.89e-03 28_[+1(1.68e-05)]_44 chr17:15862523-15862603 7.36e-01 80 chr20:34411244-34411324 5.79e-03 8_[+1(3.34e-05)]_64 chr1:67420673-67420753 7.17e-06 40_[+4(2.94e-05)]_4_[+3(3.13e-05)]_\ 20 chr1:4067762-4067842 2.65e-01 80 chr16:69564716-69564796 2.01e-03 24_[+4(1.46e-05)]_4_[+4(1.46e-05)]_\ 36 chr8:145992887-145992967 8.98e-04 30_[+1(1.68e-05)]_32_[+4(2.94e-05)]_\ 2 chr15:79471537-79471617 7.83e-04 35_[+4(1.46e-05)]_37 chr9:130841407-130841487 2.52e-05 51_[+1(3.34e-05)]_21 chr5:74862817-74862897 1.34e-04 70_[+1(1.68e-05)]_2 chr1:39583044-39583124 2.18e-07 29_[+3(8.18e-05)]_12_[+4(2.94e-05)]_\ 23 chr10:3848151-3848231 2.39e-03 38_[+1(1.68e-05)]_34 chr7:107915040-107915120 5.33e-02 18_[+3(8.18e-05)]_54 chr1:87459174-87459254 1.04e-04 5_[+3(8.18e-05)]_20_[+4(4.42e-05)]_\ 39 chr6:91078882-91078962 7.26e-04 14_[+1(3.34e-05)]_58 chr6:45262225-45262305 2.72e-03 36_[+5(1.69e-05)]_36 chr3:38191325-38191405 4.59e-01 80 chr3:33984155-33984235 6.46e-06 43_[+2(2.23e-05)]_2_[+1(1.68e-05)]_\ 19 chr4:87863502-87863582 8.95e-06 6_[+1(3.34e-05)]_6_[+2(5.98e-05)]_2_\ [+4(2.94e-05)]_[+2(5.98e-05)]_34 chr2:159986927-159987007 1.32e-01 80 chr7:148400622-148400702 2.63e-01 80 chrX:14083162-14083242 8.54e-06 8_[+3(3.13e-05)]_21_[+4(2.94e-05)]_\ 35 chr8:61242936-61243016 2.53e-03 80 chr16:14051745-14051825 6.67e-04 51_[+1(3.34e-05)]_21 chr2:11893793-11893873 6.50e-02 80 chr13:101045127-10104520 2.55e-04 22_[+4(1.46e-05)]_9_[+4(1.46e-05)]_\ 15_[+4(1.46e-05)]_10 chr10:80218910-80218990 4.10e-02 14_[+3(3.13e-05)]_58 chr8:142036931-142037011 4.08e-04 39_[+2(4.12e-05)]_33 chr1:38999690-38999770 2.17e-01 80 chr18:9005604-9005684 1.12e-05 43_[+2(2.23e-05)]_5_[+1(1.68e-05)]_\ 16 chr19:48829371-48829451 3.12e-04 8_[+4(2.94e-05)]_4_[+4(1.46e-05)]_\ 52 chr7:133768852-133768932 1.29e-03 42_[+1(3.34e-05)]_30 chr6:17971873-17971953 3.99e-03 63_[+4(2.94e-05)]_9 chr6:52382501-52382581 4.93e-04 22_[+4(2.94e-05)]_7_[+1(1.68e-05)]_\ 35 chr13:50819355-50819435 6.36e-04 56_[+4(1.46e-05)]_16 chr17:16302060-16302140 5.50e-03 52_[+4(4.42e-05)]_20 chr2:98527961-98528041 6.85e-04 80 chr11:119465587-11946566 1.48e-05 32_[+4(1.46e-05)]_19_[+2(4.12e-05)]_\ 13 chr6:28655534-28655614 1.33e-02 56_[+5(1.69e-05)]_16 chr6:26756731-26756811 2.94e-03 1_[+3(3.13e-05)]_71 chr6:161223152-161223232 4.45e-03 28_[+5(8.99e-05)]_44 chr1:32773083-32773163 7.80e-05 26_[+4(1.46e-05)]_46 chr7:86740257-86740337 9.62e-04 37_[+4(2.94e-05)]_35 chr1:21965241-21965321 1.66e-04 19_[+4(4.42e-05)]_42_[+5(6.19e-05)]_\ 3 chr14:31669446-31669526 5.67e-01 80 chr5:37672410-37672490 6.42e-04 33_[+5(1.69e-05)]_19_[+5(1.69e-05)]_\ 12 chr2:219287338-219287418 1.57e-02 80 chr3:142900967-142901047 2.60e-01 80 chr19:14495192-14495272 5.36e-04 45_[+1(1.68e-05)]_27 chr22:41107693-41107773 5.33e-05 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chr12:104802482-10480256 2.89e-05 33_[+4(2.94e-05)]_12_[+2(4.12e-05)]_\ 19 chr16:70470020-70470100 1.13e-03 40_[+4(1.46e-05)]_32 chr20:32978780-32978860 2.91e-03 59_[+4(2.94e-05)]_13 chr17:61538276-61538356 3.74e-04 80 chr20:33708107-33708187 5.09e-05 39_[+4(2.94e-05)]_33 chr7:29686814-29686894 3.11e-02 80 chr7:116105990-116106070 2.28e-04 17_[+1(3.34e-05)]_5_[+3(8.18e-05)]_\ 42 chr4:187751132-187751212 2.49e-04 50_[+1(3.34e-05)]_2_[+3(8.18e-05)]_\ 12 chr1:117300843-117300923 8.77e-03 54_[+5(1.69e-05)]_18 chr14:23005989-23006069 1.11e-04 30_[+4(5.92e-05)]_3_[+4(2.94e-05)]_\ 31 chr17:55063199-55063279 5.43e-01 80 chr10:7070328-7070408 1.67e-04 5_[+4(1.46e-05)]_3_[+1(1.68e-05)]_\ 56 chr3:4940412-4940492 5.91e-02 80 chr1:172903166-172903246 3.99e-05 24_[+4(2.94e-05)]_8_[+1(1.68e-05)]_\ 32 chr19:11205899-11205979 5.88e-03 29_[+4(5.92e-05)]_43 chr4:187766481-187766561 3.64e-01 80 chr7:155082891-155082971 2.57e-03 28_[+1(3.34e-05)]_44 chr1:149911155-149911235 6.21e-01 80 chr1:42335958-42336038 5.59e-05 3_[+1(1.68e-05)]_32_[+4(2.94e-05)]_\ 6_[+3(8.18e-05)]_15 chr11:36171409-36171489 9.18e-03 13_[+1(3.34e-05)]_8_[+1(3.34e-05)]_\ 43 chr17:39686559-39686639 7.09e-06 19_[+1(1.68e-05)]_3_[+3(8.18e-05)]_\ 42 chr17:47049832-47049912 5.72e-03 13_[+4(1.46e-05)]_59 chr1:153031903-153031983 1.95e-04 33_[+4(2.94e-05)]_39 chr6:138235825-138235905 3.51e-02 80 chr7:99160649-99160729 2.53e-03 15_[+4(1.46e-05)]_16_[+4(2.94e-05)]_\ 33 chr6:126267573-126267653 1.93e-05 60_[+1(1.68e-05)]_12 chr1:246345561-246345641 9.21e-01 80 chr10:62042749-62042829 1.52e-02 80 chr5:132576340-132576420 1.24e-04 7_[+3(3.13e-05)]_8_[+1(3.34e-05)]_\ 11_[+1(3.34e-05)]_30 chr1:120809552-120809632 5.13e-01 80 chr6:34713326-34713406 2.43e-05 37_[+1(1.68e-05)]_35 chr6:16224782-16224862 2.90e-01 80 chr10:52271671-52271751 1.71e-03 27_[+1(3.34e-05)]_45 chr1:62174819-62174899 1.89e-03 9_[+3(3.13e-05)]_51_[+2(8.61e-05)]_\ 4 chr17:75830723-75830803 1.36e-03 26_[+1(3.34e-05)]_46 chr7:102632269-102632349 3.43e-05 3_[+5(3.35e-05)]_2_[+4(5.92e-05)]_\ 19_[+1(1.68e-05)]_32 chr1:245126910-245126990 1.24e-07 21_[+1(3.34e-05)]_3_[+3(3.13e-05)]_\ 31_[+5(1.69e-05)]_1 chr6:130173552-130173632 2.01e-04 18_[+5(3.35e-05)]_54 chr8:126193325-126193405 2.15e-01 80 chr16:67302254-67302334 2.77e-03 43_[+4(1.46e-05)]_29 chr22:31624025-31624105 3.71e-03 52_[+5(1.69e-05)]_20 chr6:26026036-26026116 5.55e-05 20_[+4(1.46e-05)]_52 chr7:127478182-127478262 1.41e-02 80 chr1:207484705-207484785 1.37e-03 23_[+4(2.94e-05)]_49 chr5:70681186-70681266 1.15e-01 80 chr1:156084080-156084160 8.58e-01 80 chr11:118482013-11848209 1.84e-01 4_[+3(8.18e-05)]_17_[+3(3.13e-05)]_\ 43 chr3:8671352-8671432 9.91e-01 80 chr22:47330940-47331020 5.90e-04 34_[+1(1.68e-05)]_38 chr2:172081880-172081960 7.70e-03 80 chr3:47388917-47388997 8.55e-02 80 chr19:4145843-4145923 2.04e-03 42_[+1(3.34e-05)]_12_[+4(2.94e-05)]_\ 10 chr20:40325246-40325326 7.94e-04 43_[+1(3.34e-05)]_29 chr6:43979883-43979963 5.28e-02 80 chr8:29107600-29107680 4.66e-04 46_[+4(1.46e-05)]_26 chr1:8933788-8933868 2.03e-04 35_[+4(1.46e-05)]_6_[+4(4.42e-05)]_\ 23 chr6:113277979-113278059 2.17e-04 42_[+4(2.94e-05)]_30 chr7:73265984-73266064 4.26e-02 80 chr1:28827628-28827708 1.82e-04 68_[+4(1.46e-05)]_4 chr11:10921214-10921294 1.87e-05 26_[+5(6.19e-05)]_1_[+4(2.94e-05)]_\ 37 chr8:40458100-40458180 7.92e-04 26_[+4(2.94e-05)]_46 chr14:54902359-54902439 2.40e-04 26_[+1(3.34e-05)]_23_[+2(8.61e-05)]_\ 15 chr22:26800986-26801066 2.20e-01 80 chr22:21910426-21910506 3.87e-03 47_[+4(2.94e-05)]_25 chr7:123178366-123178446 1.54e-03 27_[+1(3.34e-05)]_45 chr14:81868471-81868551 5.78e-04 64_[+2(5.98e-05)]_8 chr3:16351263-16351343 1.27e-04 [+1(3.34e-05)]_26_[+3(3.13e-05)]_38 chr16:75658884-75658964 1.77e-04 15_[+1(1.68e-05)]_57 chr2:12080464-12080544 3.61e-03 80 chr2:69828423-69828503 5.75e-02 80 chr9:108438725-108438805 6.62e-03 5_[+3(8.18e-05)]_67 chr5:176421980-176422060 6.38e-01 80 chr20:5700665-5700745 1.61e-04 23_[+1(1.68e-05)]_49 chr3:196758475-196758555 1.10e-04 45_[+3(3.13e-05)]_18_[+1(3.34e-05)]_\ 1 chr3:139058298-139058378 3.32e-02 80 chr6:17715446-17715526 2.80e-04 40_[+4(5.92e-05)]_3_[+1(3.34e-05)]_\ 21 chr1:10571242-10571322 3.60e-01 80 chr19:33488124-33488204 2.45e-02 80 chr4:80599731-80599811 2.47e-01 80 chr6:144126111-144126191 3.61e-05 15_[+2(2.23e-05)]_21_[+4(1.46e-05)]_\ 28 chr9:108409957-108410037 6.10e-05 15_[+3(3.13e-05)]_43_[+4(2.94e-05)]_\ 6 chr2:170526792-170526872 4.82e-04 43_[+4(2.94e-05)]_29 chr2:100907709-100907789 9.00e-06 41_[+2(2.23e-05)]_10_[+1(1.68e-05)]_\ 13 chr1:155194570-155194650 3.75e-04 65_[+1(1.68e-05)]_7 chr3:5236558-5236638 1.04e-04 68_[+4(1.46e-05)]_4 chr3:133662526-133662606 7.19e-06 17_[+4(4.42e-05)]_14_[+2(2.23e-05)]_\ 33 chr1:161691840-161691920 1.89e-03 55_[+1(1.68e-05)]_17 chr2:201270709-201270789 2.11e-03 67_[+1(1.68e-05)]_5 chr7:150736568-150736648 3.40e-03 22_[+4(1.46e-05)]_50 chr1:205703667-205703747 6.25e-04 40_[+1(3.34e-05)]_2_[+1(3.34e-05)]_\ 22 chr6:27741795-27741875 2.59e-01 80 chr8:129162336-129162416 2.22e-02 80 chrX:65370186-65370266 9.72e-05 43_[+1(1.68e-05)]_29 chr15:35849812-35849892 5.23e-05 37_[+4(2.94e-05)]_35 chr9:37953852-37953932 8.66e-05 1_[+1(3.34e-05)]_71 chr6:30737481-30737561 5.40e-03 31_[+1(1.68e-05)]_41 chr1:8686596-8686676 3.60e-01 80 chr1:35602541-35602621 5.92e-02 31_[+2(2.23e-05)]_41 chr10:66268028-66268108 1.25e-01 25_[+3(8.18e-05)]_16_[+3(8.18e-05)]_\ 23 chr16:58010511-58010591 2.67e-05 7_[+2(4.12e-05)]_13_[+4(5.92e-05)]_\ 44 chr3:195443022-195443102 1.92e-03 26_[+4(4.42e-05)]_2_[+4(4.42e-05)]_\ 21_[+4(4.42e-05)]_7 chr20:33301353-33301433 1.01e-06 6_[+5(1.69e-05)]_5_[+2(5.98e-05)]_\ 30_[+1(3.34e-05)]_15 chr8:101912760-101912840 3.03e-04 64_[+1(3.34e-05)]_8 chr6:28514929-28515009 3.01e-02 80 chr6:119578334-119578414 2.69e-03 23_[+5(1.69e-05)]_49 chr1:169281606-169281686 1.29e-02 80 chr2:170521632-170521712 9.46e-03 37_[+3(8.18e-05)]_35 chr2:119560725-119560805 1.67e-04 39_[+1(3.34e-05)]_33 chr12:45667754-45667834 3.83e-01 80 chr2:38591498-38591578 5.10e-03 80 chr19:40922959-40923039 2.10e-01 12_[+3(8.18e-05)]_60 chr12:95910709-95910789 1.42e-01 80 chr3:23947706-23947786 5.78e-03 10_[+2(2.23e-05)]_62 chr8:80766262-80766342 9.44e-05 48_[+4(2.94e-05)]_24 chr5:95053999-95054079 4.66e-01 80 chr7:127624028-127624108 8.64e-03 80 chr15:63688056-63688136 5.96e-04 10_[+4(4.42e-05)]_62 chr12:6748490-6748570 2.78e-02 62_[+2(4.12e-05)]_10 chr6:90754737-90754817 2.68e-02 80 chr5:75668589-75668669 2.39e-03 22_[+1(3.34e-05)]_50 chr5:71530194-71530274 4.93e-02 80 chr12:94316423-94316503 2.02e-04 30_[+4(1.46e-05)]_42 chr9:125209216-125209296 4.79e-02 28_[+3(8.18e-05)]_44 chr17:43201563-43201643 1.09e-04 17_[+4(2.94e-05)]_44_[+5(8.99e-05)]_\ 3 chr8:125860450-125860530 5.24e-05 80 chr19:55471364-55471444 3.33e-01 15_[+3(8.18e-05)]_57 chr2:170870542-170870622 4.62e-02 13_[+3(8.18e-05)]_59 chr1:30664086-30664166 1.93e-03 54_[+4(4.42e-05)]_18 chr2:17304340-17304420 6.73e-05 80 chr5:32369819-32369899 2.55e-03 41_[+1(1.68e-05)]_31 chr11:44291707-44291787 5.66e-02 80 chr19:32864816-32864896 2.06e-02 80 chr7:92072201-92072281 4.00e-01 80 chr4:75375242-75375322 6.11e-02 80 chr1:114347496-114347576 1.79e-05 52_[+2(2.23e-05)]_4_[+4(1.46e-05)]_\ 8 chr1:27400848-27400928 1.56e-04 16_[+1(1.68e-05)]_56 chr8:99803249-99803329 7.49e-02 80 chr10:25782242-25782322 1.62e-02 54_[+2(5.98e-05)]_18 chr4:170525866-170525946 1.20e-04 55_[+1(3.34e-05)]_17 chr9:111666078-111666158 6.27e-01 80 chr10:13446416-13446496 1.07e-04 72_[+1(3.34e-05)] chr3:39680946-39681026 3.93e-04 13_[+4(2.94e-05)]_33_[+4(5.92e-05)]_\ 18 chr6:28047785-28047865 5.19e-03 40_[+4(2.94e-05)]_21_[+4(2.94e-05)]_\ 3 chr3:19979186-19979266 1.18e-04 27_[+4(2.94e-05)]_4_[+3(8.18e-05)]_\ 33 chr6:25971538-25971618 3.97e-03 70_[+1(3.34e-05)]_2 chrX:130700016-130700096 1.27e-02 8_[+3(3.13e-05)]_64 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************