******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCC2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:150481816-150481896 1.0000 80 chr15:34908964-34909044 1.0000 80 chr19:13842064-13842144 1.0000 80 chr7:148400638-148400718 1.0000 80 chr8:126676816-126676896 1.0000 80 chr5:174945012-174945092 1.0000 80 chr17:15862559-15862639 1.0000 80 chr2:98527885-98527965 1.0000 80 chr9:37840715-37840795 1.0000 80 chr18:20248084-20248164 1.0000 80 chr8:66629746-66629826 1.0000 80 chr7:26890115-26890195 1.0000 80 chr5:34924199-34924279 1.0000 80 chr2:65233777-65233857 1.0000 80 chr13:101045139-10104521 1.0000 80 chr8:103597600-103597680 1.0000 80 chr1:110473871-110473951 1.0000 80 chr1:87459182-87459262 1.0000 80 chr1:26564171-26564251 1.0000 80 chr1:117300798-117300878 1.0000 80 chr5:71530172-71530252 1.0000 80 chr21:16002947-16003027 1.0000 80 chr6:3912271-3912351 1.0000 80 chr11:107436845-10743692 1.0000 80 chr9:130841350-130841430 1.0000 80 chr9:124049441-124049521 1.0000 80 chr1:44514093-44514173 1.0000 80 chr2:69828423-69828503 1.0000 80 chr5:74862857-74862937 1.0000 80 chr15:79471562-79471642 1.0000 80 chr1:32701787-32701867 1.0000 80 chr18:9005621-9005701 1.0000 80 chr7:143189245-143189325 1.0000 80 chr8:61242937-61243017 1.0000 80 chr2:12317265-12317345 1.0000 80 chr3:45709704-45709784 1.0000 80 chr1:45173726-45173806 1.0000 80 chr6:34713325-34713405 1.0000 80 chr8:41650007-41650087 1.0000 80 chr6:10348170-10348250 1.0000 80 chr3:32182560-32182640 1.0000 80 chr7:102632252-102632332 1.0000 80 chr1:52035539-52035619 1.0000 80 chr2:9692869-9692949 1.0000 80 chr6:154835189-154835269 1.0000 80 chr5:112378700-112378780 1.0000 80 chr2:38591466-38591546 1.0000 80 chr22:40895277-40895357 1.0000 80 chr5:70681176-70681256 1.0000 80 chr10:73857646-73857726 1.0000 80 chr6:136931567-136931647 1.0000 80 chr1:149911186-149911266 1.0000 80 chr7:88319301-88319381 1.0000 80 chr10:80218905-80218985 1.0000 80 chrX:14083170-14083250 1.0000 80 chr1:244486398-244486478 1.0000 80 chr1:172903201-172903281 1.0000 80 chr1:28827662-28827742 1.0000 80 chr1:38999681-38999761 1.0000 80 chr3:39680907-39680987 1.0000 80 chr15:84115968-84116048 1.0000 80 chr9:97041234-97041314 1.0000 80 chr7:133768832-133768912 1.0000 80 chr20:40325236-40325316 1.0000 80 chr20:34411182-34411262 1.0000 80 chr7:116105973-116106053 1.0000 80 chr6:91078855-91078935 1.0000 80 chr19:2161399-2161479 1.0000 80 chr8:74284053-74284133 1.0000 80 chr12:46613783-46613863 1.0000 80 chr16:69564738-69564818 1.0000 80 chr2:64479923-64480003 1.0000 80 chr18:8913738-8913818 1.0000 80 chr22:41107703-41107783 1.0000 80 chr10:7070274-7070354 1.0000 80 chr11:32408444-32408524 1.0000 80 chr3:33984151-33984231 1.0000 80 chr6:144126070-144126150 1.0000 80 chr1:153031947-153032027 1.0000 80 chr7:86740254-86740334 1.0000 80 chr6:149440498-149440578 1.0000 80 chr8:59754782-59754862 1.0000 80 chr2:170526782-170526862 1.0000 80 chr10:3137764-3137844 1.0000 80 chr1:4067785-4067865 1.0000 80 chr16:75658854-75658934 1.0000 80 chr12:95910731-95910811 1.0000 80 chr1:207484687-207484767 1.0000 80 chr3:43812274-43812354 1.0000 80 chr2:47478276-47478356 1.0000 80 chr4:187766493-187766573 1.0000 80 chr11:44355038-44355118 1.0000 80 chr20:57199066-57199146 1.0000 80 chr16:9141779-9141859 1.0000 80 chr6:26026010-26026090 1.0000 80 chr1:23441792-23441872 1.0000 80 chr3:171242078-171242158 1.0000 80 chr5:176421981-176422061 1.0000 80 chr9:37953863-37953943 1.0000 80 chr5:10703236-10703316 1.0000 80 chr17:62919253-62919333 1.0000 80 chr11:61568280-61568360 1.0000 80 chr5:37672421-37672501 1.0000 80 chr11:86235407-86235487 1.0000 80 chr3:196758477-196758557 1.0000 80 chr2:201270692-201270772 1.0000 80 chr11:119465586-11946566 1.0000 80 chr1:32773128-32773208 1.0000 80 chr6:130173526-130173606 1.0000 80 chr1:8933811-8933891 1.0000 80 chr11:100840545-10084062 1.0000 80 chr19:11205860-11205940 1.0000 80 chr6:45262233-45262313 1.0000 80 chr7:871475-871555 1.0000 80 chr5:132576346-132576426 1.0000 80 chr10:88785467-88785547 1.0000 80 chr6:20458830-20458910 1.0000 80 chr7:116141640-116141720 1.0000 80 chr1:39583033-39583113 1.0000 80 chr4:174140030-174140110 1.0000 80 chr7:29686786-29686866 1.0000 80 chr3:47388931-47389011 1.0000 80 chr7:2797767-2797847 1.0000 80 chr17:53421930-53422010 1.0000 80 chr10:76952031-76952111 1.0000 80 chr14:54902365-54902445 1.0000 80 chr6:134516836-134516916 1.0000 80 chr20:5700702-5700782 1.0000 80 chr12:45667720-45667800 1.0000 80 chr11:36171411-36171491 1.0000 80 chr17:39686582-39686662 1.0000 80 chr8:21818099-21818179 1.0000 80 chr1:224730688-224730768 1.0000 80 chr10:75781151-75781231 1.0000 80 chr3:183128149-183128229 1.0000 80 chr6:42939013-42939093 1.0000 80 chr4:80599775-80599855 1.0000 80 chr6:31685454-31685534 1.0000 80 chr12:112811429-11281150 1.0000 80 chr12:71039800-71039880 1.0000 80 chrX:119683953-119684033 1.0000 80 chr4:8338323-8338403 1.0000 80 chr7:150097421-150097501 1.0000 80 chr11:96095093-96095173 1.0000 80 chr11:10921238-10921318 1.0000 80 chr3:139058302-139058382 1.0000 80 chr9:125164824-125164904 1.0000 80 chr8:38068361-38068441 1.0000 80 chr2:202652377-202652457 1.0000 80 chr3:16351284-16351364 1.0000 80 chr19:21641060-21641140 1.0000 80 chr9:125209206-125209286 1.0000 80 chr6:87395074-87395154 1.0000 80 chr10:66268022-66268102 1.0000 80 chr14:31669481-31669561 1.0000 80 chr1:67420677-67420757 1.0000 80 chr8:145992888-145992968 1.0000 80 chr2:9034596-9034676 1.0000 80 chr9:108409929-108410009 1.0000 80 chr15:35849828-35849908 1.0000 80 chr3:42647421-42647501 1.0000 80 chr7:32545996-32546076 1.0000 80 chr10:17071701-17071781 1.0000 80 chr2:43653698-43653778 1.0000 80 chr7:150736627-150736707 1.0000 80 chr7:155082902-155082982 1.0000 80 chr12:104802456-10480253 1.0000 80 chr6:130160765-130160845 1.0000 80 chr7:106675983-106676063 1.0000 80 chr8:91200048-91200128 1.0000 80 chr1:100813069-100813149 1.0000 80 chr7:99160629-99160709 1.0000 80 chr11:20389170-20389250 1.0000 80 chr22:21910408-21910488 1.0000 80 chrX:70670709-70670789 1.0000 80 chr8:29107601-29107681 1.0000 80 chr1:110955888-110955968 1.0000 80 chr10:65467205-65467285 1.0000 80 chr17:39010612-39010692 1.0000 80 chr1:75938264-75938344 1.0000 80 chr10:30971450-30971530 1.0000 80 chr10:13446401-13446481 1.0000 80 chr2:196351915-196351995 1.0000 80 chr11:72032860-72032940 1.0000 80 chr16:85335967-85336047 1.0000 80 chr2:219287343-219287423 1.0000 80 chr10:11492604-11492684 1.0000 80 chr11:9010278-9010358 1.0000 80 chr7:10747333-10747413 1.0000 80 chr5:10358119-10358199 1.0000 80 chr3:4940391-4940471 1.0000 80 chr2:170870546-170870626 1.0000 80 chr6:27741772-27741852 1.0000 80 chr19:9186428-9186508 1.0000 80 chr15:42791653-42791733 1.0000 80 chr3:179093048-179093128 1.0000 80 chr11:86454623-86454703 1.0000 80 chr19:41172431-41172511 1.0000 80 chr8:38895795-38895875 1.0000 80 chr20:33301314-33301394 1.0000 80 chr6:119629570-119629650 1.0000 80 chr3:25645822-25645902 1.0000 80 chr7:123178335-123178415 1.0000 80 chr1:21965184-21965264 1.0000 80 chr2:182675691-182675771 1.0000 80 chr8:67018085-67018165 1.0000 80 chr2:69076946-69077026 1.0000 80 chr17:61538273-61538353 1.0000 80 chr16:3072424-3072504 1.0000 80 chr1:44997939-44998019 1.0000 80 chr4:96210544-96210624 1.0000 80 chr2:100908723-100908803 1.0000 80 chr6:28514920-28515000 1.0000 80 chr6:17971873-17971953 1.0000 80 chr7:12991278-12991358 1.0000 80 chr3:142900964-142901044 1.0000 80 chr14:23005995-23006075 1.0000 80 chr8:141353545-141353625 1.0000 80 chr1:27400853-27400933 1.0000 80 chr17:71470661-71470741 1.0000 80 chr15:59126086-59126166 1.0000 80 chr3:11330910-11330990 1.0000 80 chr1:38388547-38388627 1.0000 80 chr1:94130001-94130081 1.0000 80 chr1:25739894-25739974 1.0000 80 chr5:139597284-139597364 1.0000 80 chr5:140699890-140699970 1.0000 80 chr1:169281661-169281741 1.0000 80 chr15:35459100-35459180 1.0000 80 chr6:17715435-17715515 1.0000 80 chr18:32690719-32690799 1.0000 80 chr12:94316404-94316484 1.0000 80 chr6:4688433-4688513 1.0000 80 chr6:109705788-109705868 1.0000 80 chr1:167199173-167199253 1.0000 80 chr19:33592240-33592320 1.0000 80 chr6:28655574-28655654 1.0000 80 chr19:14495154-14495234 1.0000 80 chrX:65382285-65382365 1.0000 80 chr4:82342791-82342871 1.0000 80 chr5:131083066-131083146 1.0000 80 chr2:170767044-170767124 1.0000 80 chr3:38388149-38388229 1.0000 80 chr7:95865646-95865726 1.0000 80 chr5:142625746-142625826 1.0000 80 chr8:8932700-8932780 1.0000 80 chr16:20758411-20758491 1.0000 80 chr16:71526060-71526140 1.0000 80 chr6:125302796-125302876 1.0000 80 chr12:96769880-96769960 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SMARCC2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCC2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.274 C 0.227 G 0.226 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.227 G 0.226 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RTGASTCA MEME-1 width = 8 sites = 153 llr = 1350 E-value = 4.8e-207 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGASTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5::a:::a pos.-specific C 2:::4:a: probability G 3:a:5::: matrix T :a:::a:: bits 2.1 * 1.9 ** *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.7 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGAGTCA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:95865646-95865726 11 1.78e-05 gggggcaaat atgagtca agcattcctg chr6:4688433-4688513 16 1.78e-05 aagatggcag atgagtca ctgctgtgtg chr6:17715435-17715515 51 1.78e-05 TGCCCCTTCA ATGAGTCA GCAGTGACTC chr1:27400853-27400933 11 1.78e-05 ATGATAAAAT ATGAGTCA TTATGGTGtg chr14:23005995-23006075 24 1.78e-05 AGAAACAGGA ATGAGTCA GGCGTGAGTC chr17:61538273-61538353 40 1.78e-05 AAAGACAGAT ATGAGTCA AAGCTTACTC chr6:119629570-119629650 62 1.78e-05 aacgccactg atgagtca catacttaag chr11:86454623-86454703 18 1.78e-05 AGACCACACC ATGAGTCA GGCAAAAAAG chr15:42791653-42791733 20 1.78e-05 GTCTTCACCT ATGAGTca taccaccatc chr16:85335967-85336047 70 1.78e-05 TTAGCCACAA ATGAGTCA CAG chr2:196351915-196351995 35 1.78e-05 GATAAGGGAA ATGAGTCA TCTAAATCTT chr1:100813069-100813149 55 1.78e-05 AGAACCGTTT ATGAGTCA TGCTATCTAT chr7:106675983-106676063 62 1.78e-05 ggtcaggaag atgagtca tattcagtaa chr15:35849828-35849908 21 1.78e-05 AGTGAAGAAG ATGAGTCA CAAATTGTAA chr8:145992888-145992968 29 1.78e-05 CCGTACAGGC ATGAGTCA TTGTACCCAG chr11:10921238-10921318 11 1.78e-05 ACAGAGGCAG ATGAGTCA CAATCCCAGA chr4:174140030-174140110 22 1.78e-05 gcaaagataa atgagtca tggtctctcc chr1:39583033-39583113 60 1.78e-05 TAAACTTGCC ATGAGTCA CACTGGGGAG chr7:871475-871555 43 1.78e-05 AGAGGAAAGT ATGAGTCA TTCCAAATAA chr19:11205860-11205940 28 1.78e-05 AGCACAAGAA ATGAGTCA TTTCCTCCTT chr11:100840545-10084062 34 1.78e-05 tgcctggtgt atgagtca cactttgctg chr16:9141779-9141859 22 1.78e-05 GGAGGTCTGA ATGAGTCA GCATAGTGGG chr2:170526782-170526862 53 1.78e-05 CCACTGGGCT ATGAGTCA CACAAAGACT chr3:33984151-33984231 57 1.78e-05 TAGATAAGAG ATGAGTCA TATTTGGGGA chr11:32408444-32408524 71 1.78e-05 GCTGATATAA ATGAGTCA CC chr10:7070274-7070354 70 1.78e-05 tgactcacta atgagtca taa chr22:41107703-41107783 3 1.78e-05 ac atgagtca tcgagaggct chrX:14083170-14083250 29 1.78e-05 CTAACCCAAG ATGAGTCA CACCACTCCC chr7:102632252-102632332 30 1.78e-05 GACAGGAAGC ATGAGTCA GGAATAAGTG chr5:74862857-74862937 30 1.78e-05 AGTGGAATGT ATGAGTCA TGCAGTGGAG chr1:44514093-44514173 41 1.78e-05 ATAAGAACAG ATGAGTCA GAGGTTTCTG chr5:34924199-34924279 22 1.78e-05 CGGTTAGATG ATGAGTCA CACAGTGACT chr18:20248084-20248164 1 1.78e-05 . ATGAGTCA TGCAGTGACT chr15:34908964-34909044 47 1.78e-05 TGCAGTGTAA ATGAGTCA GACCCATGCG chr1:167199173-167199253 29 3.56e-05 CTTAAATAGC ATGACTCA ACAATTCCAT chr12:94316404-94316484 49 3.56e-05 AGTAAAAACT ATGACTCA CATTCAAACC chr3:11330910-11330990 58 3.56e-05 AACTCTGTCT ATGACTCA CTTCCCCCCA chr2:100908723-100908803 15 3.56e-05 GCTGCAGGGC ATGACTCA TCAAGGAGCC chr2:182675691-182675771 6 3.56e-05 AAGCC ATGACTCA TAATCGGGAA chr7:123178335-123178415 25 3.56e-05 AAGTCACTAC ATGACTCA CTATTTTACT chr3:25645822-25645902 31 3.56e-05 GAGAAGCTGC ATGACTCA CATAGAAAAA chr8:38895795-38895875 39 3.56e-05 tgtatctctc atgactca tttcctcact chr19:41172431-41172511 43 3.56e-05 TTACCACGCT ATGACTCA GAGGTTATCA chr19:9186428-9186508 8 3.56e-05 ACTGCCC ATGACTCA CTCGGCCCCC chr17:39010612-39010692 64 3.56e-05 GAGTAAGATA ATGACTCA CTGAGAAAG chr7:99160629-99160709 35 3.56e-05 ATTTGAAGGC ATGACTCA CTGTGAGTAC chr8:91200048-91200128 53 3.56e-05 TTCCAAGAAG ATGACTCA TTAACATGAG chr7:155082902-155082982 17 3.56e-05 ccactcaagc atgactca tccaaggcct chr2:9034596-9034676 70 3.56e-05 GGGGCCTTCC ATGACTCA TTT chr9:125164824-125164904 14 3.56e-05 TCCTCTCCCC ATGACTCA CTTTTTCCAC chr12:71039800-71039880 18 3.56e-05 TTCTGCAGTG ATGACTCA CTTCTGGGCT chr4:80599775-80599855 67 3.56e-05 TCTTCCTTTT ATGACTCA ATGTTA chr6:42939013-42939093 48 3.56e-05 CATGGTGTGT ATGACTCA CCATGGAAGC chr11:36171411-36171491 34 3.56e-05 CTCATGACTC ATGACTCA TGAATGTGGC chr14:54902365-54902445 20 3.56e-05 agctgaaaga atgaCTCA TTTATTCCAG chr5:132576346-132576426 36 3.56e-05 CTCTTCGCGC ATGACTCA TCTCTTTGTG chr5:10703236-10703316 28 3.56e-05 TCTGTGAGGA ATGACTCA CTCTGGGCAG chr6:26026010-26026090 46 3.56e-05 ttatctgctg atgactca cacattttta chr2:47478276-47478356 11 3.56e-05 tggtgcgatc atgactca ctgcagcctc chr16:69564738-69564818 14 3.56e-05 GACTCACCGG ATGACTCA CTTCCTTGCC chr6:91078855-91078935 28 3.56e-05 AAGGAATTAG ATGACTCA AGGTGGTGAC chr7:133768832-133768912 62 3.56e-05 GCCTGGAAAC ATGACTCA TCCAAGGGTG chr9:97041234-97041314 51 3.56e-05 TGCTACATTT ATGACTCA GTTATTTACC chr1:28827662-28827742 34 3.56e-05 GGCCTCAGCA ATGACTCA CTTCTATTTG chr1:244486398-244486478 63 3.56e-05 TACCACAACT ATGACTCA GTCCTGACTC chr2:9692869-9692949 25 3.56e-05 CTAAGCTCAT ATGACTCA TAACTTTCCT chr15:79471562-79471642 10 3.56e-05 CCTGGGAGG ATGACTCA CAGCAGCGGG chr5:71530172-71530252 9 3.56e-05 CAGAAGCC ATGACTCA TGAGGTTTGG chr1:87459182-87459262 25 3.56e-05 TGTTTACTAT ATGACTCA GCTAGATTCT chr2:65233777-65233857 47 3.56e-05 tgtaatctca atgactca gaaggctgag chr5:174945012-174945092 8 3.56e-05 ATTCAGC ATGACTCA TCCATCCCCC chr8:126676816-126676896 71 3.56e-05 TTCTAGCTGC ATGACTCA CC chr5:142625746-142625826 49 5.03e-05 TTTGCACACA GTGAGTCA TCGTATCACA chr7:12991278-12991358 38 5.03e-05 GGATAAGAAA GTGAGTCA TTTAAACAAA chr6:17971873-17971953 63 5.03e-05 gattacagga gtgagtca ccacgtccgg chr16:3072424-3072504 14 5.03e-05 GAGGGAGGGA GTGAGTCA GCCAGCCGCG chr2:69076946-69077026 39 5.03e-05 CTCAGAAGCT GTGAGTCA GCCGGAAGCC chr10:65467205-65467285 50 5.03e-05 CCAGAAAGAT GTGAGTCA GTTTAGTCCT chr22:21910408-21910488 65 5.03e-05 tgagccatga gtgagtca ccgcactc chr12:104802456-10480253 59 5.03e-05 GGCTGGAATA GTGAGTCA CCCTCGGGGt chr1:67420677-67420757 36 5.03e-05 TTTTTACAAA GTGAGTCA CACTTCTTAT chr19:21641060-21641140 55 5.03e-05 ggcccttgga gtgagtca acccagtaca chr7:29686786-29686866 12 5.03e-05 aaccattaga gtgagtca ccctagaagc chr20:57199066-57199146 29 5.03e-05 AGTGTCTGGA GTGAGTCA CTGGCTGAGC chr3:43812274-43812354 65 5.03e-05 GAGGCGAGTG GTGAGTCA TCACACTG chr1:207484687-207484767 41 5.03e-05 CAAAACCTTA GTGAGTCA CCAGAGTGAT chr16:75658854-75658934 45 5.03e-05 taactaaaaa gtgagtca tgttccttgt chr10:3137764-3137844 30 5.03e-05 tttttcctat gtgagtca taaaactggc chr8:59754782-59754862 9 5.03e-05 AGACTGGG gtgagtca gcagactgcg chr7:86740254-86740334 40 5.03e-05 GTACACAGAA GTGAGTCA CCACAGCACG chr19:2161399-2161479 42 5.03e-05 gattacaggc gtgagtca ccgctcctgg chr6:136931567-136931647 1 5.03e-05 . GTGAGTCA CTTCCTCTTC chr6:34713325-34713405 38 5.03e-05 CATTTCAAGA GTGAGTCA TAGggccggc chr2:12317265-12317345 27 5.03e-05 GTCTCCACTG GTGAGTCA TCTCCCGGCC chr18:9005621-9005701 39 5.03e-05 ATAAGAAGCA GTGAGTCA TAGTCCGGAT chr6:3912271-3912351 44 5.03e-05 TCAGGCACTA GTGAGTCA CTTTTTGAGG chr7:26890115-26890195 32 5.03e-05 tgaggctgca gtgagtca tgatcacacc chr8:66629746-66629826 28 5.03e-05 CACTTGCAAG GTGAGTCA TTAGTAGATA chr2:219287343-219287423 35 6.50e-05 TCACTAAGAG GTGACTCA AAGTCAAGGT chr11:72032860-72032940 45 6.50e-05 GACTCAGATG GTGACTCA TATCACAGTC chr8:29107601-29107681 45 6.50e-05 GAAATCTACT GTGACTCA CCACCCACCA chrX:119683953-119684033 13 6.50e-05 TCAGCTACCA GTGACTCA CATGGCACTC chr10:76952031-76952111 43 6.50e-05 AATCTCACTG GTGACTCA CTGGTGCATC chr1:8933811-8933891 26 6.50e-05 CTCACAGATG GTGACTCA GCTCCGACTG chr3:196758477-196758557 69 6.50e-05 TCATTCAGCT GTGACTCA TCAG chr3:171242078-171242158 41 6.50e-05 gactcagtgt gtgactca gtgtgtgCCG chr11:44355038-44355118 27 6.50e-05 caacgctggt gtgactca aCTCTTATCA chr7:116105973-116106053 34 6.50e-05 AGCCTACCAA GTGACTCA TCCTTTCTTA chr20:34411182-34411262 70 6.50e-05 gccgggaatg gtgactca tgc chr20:40325236-40325316 53 6.50e-05 CCAGGAATCA GTGACTCA TATCAGTCTC chr9:124049441-124049521 42 6.50e-05 GGGCCTCTGG GTGACTCA GCCCTGAGTC chr13:101045139-10104521 27 6.50e-05 ACCCagggaa gtgactca cccagggaag chr1:44997939-44998019 52 7.97e-05 tgtctcattg ctgagtca tgtctctttc chr10:30971450-30971530 35 7.97e-05 CACCATCTTT CTGAGTCA CCATCCACAC chr2:43653698-43653778 38 7.97e-05 ACCAGTCTGC CTGAGTCA TCTCTGTGAT chr11:96095093-96095173 70 7.97e-05 AAATATGAGA CTGAGTCA GTT chr10:75781151-75781231 39 7.97e-05 GATAAAAATT CTGAGTCA TAGAAGAATG chr1:224730688-224730768 42 7.97e-05 tgtgggtagg ctgagtca gaaagaccaa chr11:61568280-61568360 38 7.97e-05 TAGGAGGCTC CTGAGTCA TATTCCTATG chr3:39680907-39680987 52 7.97e-05 AGGAAAAGGG CTGAGTCA CAGTGGTGTA chr1:172903201-172903281 5 7.97e-05 CATG CTGAGTCA TGCTGGCCAG chr22:40895277-40895357 52 7.97e-05 CTGACTAATA CTGAGTCA TTTAAAGAAC chr11:107436845-10743692 26 7.97e-05 agtcatccct ctgagtca tccctctgct chr1:26564171-26564251 41 7.97e-05 tgtggaattg ctgagtca tagggtaact chr19:13842064-13842144 50 7.97e-05 TTAGTCACCA CTGAGTCA TTTCTGCAAA chr16:20758411-20758491 14 9.45e-05 ttcttggagg ctgactca ctgcaaggcc chr6:109705788-109705868 50 9.45e-05 agatttcagg ctgactca ttcttgcttg chr8:67018085-67018165 40 9.45e-05 taagggcagt ctgactca taaacccaat chr6:87395074-87395154 10 9.45e-05 tgtgctgtt ctgactca ttctgcctag chr4:8338323-8338403 55 9.45e-05 actcatccca ctgactca ccccacatgg chr11:119465586-11946566 33 9.45e-05 GTTGTGGCCG CTGACTCA CATAAAGCTG chr2:64479923-64480003 18 9.45e-05 actctctttt ctgactca gcccgcctgc chr10:73857646-73857726 49 9.45e-05 GATAAGGCTC CTGACTCA CAAGTGATTC chr9:37840715-37840795 35 9.45e-05 ggccttcaca ctgactca cccctcactc chr17:15862559-15862639 52 9.45e-05 ATATTTGTAT CTGACTCA TCTAACGAAG chr2:170767044-170767124 3 1.16e-04 GT ATGATTCA CCTAATCTAT chr6:130173526-130173606 54 1.16e-04 gacaggaagt atgattca tctttatCAT chr1:32773128-32773208 29 1.16e-04 agataaaggg atgattca cacccagggg chr6:149440498-149440578 37 1.16e-04 GAGAAGTTGT ATGATTCA TACCATTACT chr5:112378700-112378780 30 1.38e-04 acagaGCTAG ATGAATCA GCATCTGTTT chr3:32182560-32182640 59 1.38e-04 TGCAAGCAAT ATGAATCA TTTCCCCTTG chr6:10348170-10348250 15 1.38e-04 GAGGGAGGGG ATGAATCA GGATGACACT chr1:23441792-23441872 55 1.73e-04 TCCCATCTCT ATGTGTCA GGTTATTTTT chr3:45709704-45709784 30 2.48e-04 GGGGAAGTGG CTGATTCA TCTTACCAGT chr10:11492604-11492684 16 2.69e-04 GAGATAAGAA ATGACTAA CACAGGGAAG chr12:112811429-11281150 65 2.69e-04 AGTGACAATG ATGACTAA GAAGATGC chr8:74284053-74284133 12 2.69e-04 CCCATTCAGC ATGACTAA GGCTGGTTAC chr20:33301314-33301394 32 2.84e-04 GTTCTGGTGT GTGTGTCA TATGGGAGAG chr11:86235407-86235487 56 3.16e-04 TTTTTTTCCA CTGAATCA TAAATCTGCA chr1:32701787-32701867 17 3.52e-04 tgacgaaatc ttgagtca ccctgctctg chr11:9010278-9010358 36 4.02e-04 CTGCCTACTT CTGTGTCA AGTCTCACTC chr7:32545996-32546076 28 4.02e-04 tggctgttca gtgactaa tgagagggta chr11:20389170-20389250 36 4.17e-04 TTGAAATGTT CTGTCTCA CTTGAGTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:95865646-95865726 1.8e-05 10_[+1]_62 chr6:4688433-4688513 1.8e-05 15_[+1]_57 chr6:17715435-17715515 1.8e-05 50_[+1]_22 chr1:27400853-27400933 1.8e-05 10_[+1]_62 chr14:23005995-23006075 1.8e-05 23_[+1]_49 chr17:61538273-61538353 1.8e-05 39_[+1]_33 chr6:119629570-119629650 1.8e-05 61_[+1]_11 chr11:86454623-86454703 1.8e-05 17_[+1]_55 chr15:42791653-42791733 1.8e-05 19_[+1]_53 chr16:85335967-85336047 1.8e-05 69_[+1]_3 chr2:196351915-196351995 1.8e-05 34_[+1]_38 chr1:100813069-100813149 1.8e-05 54_[+1]_18 chr7:106675983-106676063 1.8e-05 61_[+1]_11 chr15:35849828-35849908 1.8e-05 20_[+1]_52 chr8:145992888-145992968 1.8e-05 28_[+1]_44 chr11:10921238-10921318 1.8e-05 10_[+1]_62 chr4:174140030-174140110 1.8e-05 21_[+1]_51 chr1:39583033-39583113 1.8e-05 59_[+1]_13 chr7:871475-871555 1.8e-05 42_[+1]_30 chr19:11205860-11205940 1.8e-05 27_[+1]_45 chr11:100840545-10084062 1.8e-05 33_[+1]_39 chr16:9141779-9141859 1.8e-05 21_[+1]_51 chr2:170526782-170526862 1.8e-05 52_[+1]_20 chr3:33984151-33984231 1.8e-05 56_[+1]_16 chr11:32408444-32408524 1.8e-05 70_[+1]_2 chr10:7070274-7070354 1.8e-05 69_[+1]_3 chr22:41107703-41107783 1.8e-05 2_[+1]_70 chrX:14083170-14083250 1.8e-05 28_[+1]_44 chr7:102632252-102632332 1.8e-05 29_[+1]_43 chr5:74862857-74862937 1.8e-05 29_[+1]_43 chr1:44514093-44514173 1.8e-05 40_[+1]_32 chr5:34924199-34924279 1.8e-05 21_[+1]_51 chr18:20248084-20248164 1.8e-05 [+1]_72 chr15:34908964-34909044 1.8e-05 46_[+1]_26 chr1:167199173-167199253 3.6e-05 28_[+1]_44 chr12:94316404-94316484 3.6e-05 48_[+1]_24 chr3:11330910-11330990 3.6e-05 57_[+1]_15 chr2:100908723-100908803 3.6e-05 14_[+1]_58 chr2:182675691-182675771 3.6e-05 5_[+1]_67 chr7:123178335-123178415 3.6e-05 24_[+1]_48 chr3:25645822-25645902 3.6e-05 30_[+1]_42 chr8:38895795-38895875 3.6e-05 38_[+1]_34 chr19:41172431-41172511 3.6e-05 42_[+1]_30 chr19:9186428-9186508 3.6e-05 7_[+1]_65 chr17:39010612-39010692 3.6e-05 63_[+1]_9 chr7:99160629-99160709 3.6e-05 34_[+1]_38 chr8:91200048-91200128 3.6e-05 52_[+1]_20 chr7:155082902-155082982 3.6e-05 16_[+1]_56 chr2:9034596-9034676 3.6e-05 69_[+1]_3 chr9:125164824-125164904 3.6e-05 13_[+1]_59 chr12:71039800-71039880 3.6e-05 17_[+1]_55 chr4:80599775-80599855 3.6e-05 66_[+1]_6 chr6:42939013-42939093 3.6e-05 47_[+1]_25 chr11:36171411-36171491 3.6e-05 33_[+1]_39 chr14:54902365-54902445 3.6e-05 19_[+1]_53 chr5:132576346-132576426 3.6e-05 35_[+1]_37 chr5:10703236-10703316 3.6e-05 27_[+1]_45 chr6:26026010-26026090 3.6e-05 45_[+1]_27 chr2:47478276-47478356 3.6e-05 10_[+1]_62 chr16:69564738-69564818 3.6e-05 13_[+1]_59 chr6:91078855-91078935 3.6e-05 27_[+1]_45 chr7:133768832-133768912 3.6e-05 61_[+1]_11 chr9:97041234-97041314 3.6e-05 50_[+1]_22 chr1:28827662-28827742 3.6e-05 33_[+1]_39 chr1:244486398-244486478 3.6e-05 62_[+1]_10 chr2:9692869-9692949 3.6e-05 24_[+1]_48 chr15:79471562-79471642 3.6e-05 9_[+1]_63 chr5:71530172-71530252 3.6e-05 8_[+1]_64 chr1:87459182-87459262 3.6e-05 24_[+1]_48 chr2:65233777-65233857 3.6e-05 46_[+1]_26 chr5:174945012-174945092 3.6e-05 7_[+1]_65 chr8:126676816-126676896 3.6e-05 70_[+1]_2 chr5:142625746-142625826 5e-05 48_[+1]_24 chr7:12991278-12991358 5e-05 37_[+1]_35 chr6:17971873-17971953 5e-05 62_[+1]_10 chr16:3072424-3072504 5e-05 13_[+1]_59 chr2:69076946-69077026 5e-05 38_[+1]_34 chr10:65467205-65467285 5e-05 49_[+1]_23 chr22:21910408-21910488 5e-05 64_[+1]_8 chr12:104802456-10480253 5e-05 58_[+1]_14 chr1:67420677-67420757 5e-05 35_[+1]_37 chr19:21641060-21641140 5e-05 54_[+1]_18 chr7:29686786-29686866 5e-05 11_[+1]_61 chr20:57199066-57199146 5e-05 28_[+1]_44 chr3:43812274-43812354 5e-05 64_[+1]_8 chr1:207484687-207484767 5e-05 40_[+1]_32 chr16:75658854-75658934 5e-05 44_[+1]_28 chr10:3137764-3137844 5e-05 29_[+1]_43 chr8:59754782-59754862 5e-05 8_[+1]_64 chr7:86740254-86740334 5e-05 39_[+1]_33 chr19:2161399-2161479 5e-05 41_[+1]_31 chr6:136931567-136931647 5e-05 [+1]_72 chr6:34713325-34713405 5e-05 37_[+1]_35 chr2:12317265-12317345 5e-05 26_[+1]_46 chr18:9005621-9005701 5e-05 38_[+1]_34 chr6:3912271-3912351 5e-05 43_[+1]_29 chr7:26890115-26890195 5e-05 31_[+1]_41 chr8:66629746-66629826 5e-05 27_[+1]_45 chr2:219287343-219287423 6.5e-05 34_[+1]_38 chr11:72032860-72032940 6.5e-05 44_[+1]_28 chr8:29107601-29107681 6.5e-05 44_[+1]_28 chrX:119683953-119684033 6.5e-05 12_[+1]_60 chr10:76952031-76952111 6.5e-05 42_[+1]_30 chr1:8933811-8933891 6.5e-05 25_[+1]_47 chr3:196758477-196758557 6.5e-05 68_[+1]_4 chr3:171242078-171242158 6.5e-05 40_[+1]_32 chr11:44355038-44355118 6.5e-05 26_[+1]_46 chr7:116105973-116106053 6.5e-05 33_[+1]_39 chr20:34411182-34411262 6.5e-05 69_[+1]_3 chr20:40325236-40325316 6.5e-05 52_[+1]_20 chr9:124049441-124049521 6.5e-05 41_[+1]_31 chr13:101045139-10104521 6.5e-05 26_[+1]_46 chr1:44997939-44998019 8e-05 51_[+1]_21 chr10:30971450-30971530 8e-05 34_[+1]_38 chr2:43653698-43653778 8e-05 37_[+1]_35 chr11:96095093-96095173 8e-05 69_[+1]_3 chr10:75781151-75781231 8e-05 38_[+1]_34 chr1:224730688-224730768 8e-05 41_[+1]_31 chr11:61568280-61568360 8e-05 37_[+1]_35 chr3:39680907-39680987 8e-05 51_[+1]_21 chr1:172903201-172903281 8e-05 4_[+1]_68 chr22:40895277-40895357 8e-05 51_[+1]_21 chr11:107436845-10743692 8e-05 25_[+1]_47 chr1:26564171-26564251 8e-05 40_[+1]_32 chr19:13842064-13842144 8e-05 49_[+1]_23 chr16:20758411-20758491 9.5e-05 13_[+1]_59 chr6:109705788-109705868 9.5e-05 49_[+1]_23 chr8:67018085-67018165 9.5e-05 39_[+1]_33 chr6:87395074-87395154 9.5e-05 9_[+1]_63 chr4:8338323-8338403 9.5e-05 54_[+1]_18 chr11:119465586-11946566 9.5e-05 32_[+1]_40 chr2:64479923-64480003 9.5e-05 17_[+1]_55 chr10:73857646-73857726 9.5e-05 48_[+1]_24 chr9:37840715-37840795 9.5e-05 34_[+1]_38 chr17:15862559-15862639 9.5e-05 51_[+1]_21 chr2:170767044-170767124 0.00012 2_[+1]_70 chr6:130173526-130173606 0.00012 53_[+1]_19 chr1:32773128-32773208 0.00012 28_[+1]_44 chr6:149440498-149440578 0.00012 36_[+1]_36 chr5:112378700-112378780 0.00014 29_[+1]_43 chr3:32182560-32182640 0.00014 58_[+1]_14 chr6:10348170-10348250 0.00014 14_[+1]_58 chr1:23441792-23441872 0.00017 54_[+1]_18 chr3:45709704-45709784 0.00025 29_[+1]_43 chr10:11492604-11492684 0.00027 15_[+1]_57 chr12:112811429-11281150 0.00027 64_[+1]_8 chr8:74284053-74284133 0.00027 11_[+1]_61 chr20:33301314-33301394 0.00028 31_[+1]_41 chr11:86235407-86235487 0.00032 55_[+1]_17 chr1:32701787-32701867 0.00035 16_[+1]_56 chr11:9010278-9010358 0.0004 35_[+1]_37 chr7:32545996-32546076 0.0004 27_[+1]_45 chr11:20389170-20389250 0.00042 35_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGASTCA width=8 seqs=153 chr7:95865646-95865726 ( 11) ATGAGTCA 1 chr6:4688433-4688513 ( 16) ATGAGTCA 1 chr6:17715435-17715515 ( 51) ATGAGTCA 1 chr1:27400853-27400933 ( 11) ATGAGTCA 1 chr14:23005995-23006075 ( 24) ATGAGTCA 1 chr17:61538273-61538353 ( 40) ATGAGTCA 1 chr6:119629570-119629650 ( 62) ATGAGTCA 1 chr11:86454623-86454703 ( 18) ATGAGTCA 1 chr15:42791653-42791733 ( 20) ATGAGTCA 1 chr16:85335967-85336047 ( 70) ATGAGTCA 1 chr2:196351915-196351995 ( 35) ATGAGTCA 1 chr1:100813069-100813149 ( 55) ATGAGTCA 1 chr7:106675983-106676063 ( 62) ATGAGTCA 1 chr15:35849828-35849908 ( 21) ATGAGTCA 1 chr8:145992888-145992968 ( 29) ATGAGTCA 1 chr11:10921238-10921318 ( 11) ATGAGTCA 1 chr4:174140030-174140110 ( 22) ATGAGTCA 1 chr1:39583033-39583113 ( 60) ATGAGTCA 1 chr7:871475-871555 ( 43) ATGAGTCA 1 chr19:11205860-11205940 ( 28) ATGAGTCA 1 chr11:100840545-10084062 ( 34) ATGAGTCA 1 chr16:9141779-9141859 ( 22) ATGAGTCA 1 chr2:170526782-170526862 ( 53) ATGAGTCA 1 chr3:33984151-33984231 ( 57) ATGAGTCA 1 chr11:32408444-32408524 ( 71) ATGAGTCA 1 chr10:7070274-7070354 ( 70) ATGAGTCA 1 chr22:41107703-41107783 ( 3) ATGAGTCA 1 chrX:14083170-14083250 ( 29) ATGAGTCA 1 chr7:102632252-102632332 ( 30) ATGAGTCA 1 chr5:74862857-74862937 ( 30) ATGAGTCA 1 chr1:44514093-44514173 ( 41) ATGAGTCA 1 chr5:34924199-34924279 ( 22) ATGAGTCA 1 chr18:20248084-20248164 ( 1) ATGAGTCA 1 chr15:34908964-34909044 ( 47) ATGAGTCA 1 chr1:167199173-167199253 ( 29) ATGACTCA 1 chr12:94316404-94316484 ( 49) ATGACTCA 1 chr3:11330910-11330990 ( 58) ATGACTCA 1 chr2:100908723-100908803 ( 15) ATGACTCA 1 chr2:182675691-182675771 ( 6) ATGACTCA 1 chr7:123178335-123178415 ( 25) ATGACTCA 1 chr3:25645822-25645902 ( 31) ATGACTCA 1 chr8:38895795-38895875 ( 39) ATGACTCA 1 chr19:41172431-41172511 ( 43) ATGACTCA 1 chr19:9186428-9186508 ( 8) ATGACTCA 1 chr17:39010612-39010692 ( 64) ATGACTCA 1 chr7:99160629-99160709 ( 35) ATGACTCA 1 chr8:91200048-91200128 ( 53) ATGACTCA 1 chr7:155082902-155082982 ( 17) ATGACTCA 1 chr2:9034596-9034676 ( 70) ATGACTCA 1 chr9:125164824-125164904 ( 14) ATGACTCA 1 chr12:71039800-71039880 ( 18) ATGACTCA 1 chr4:80599775-80599855 ( 67) ATGACTCA 1 chr6:42939013-42939093 ( 48) ATGACTCA 1 chr11:36171411-36171491 ( 34) ATGACTCA 1 chr14:54902365-54902445 ( 20) ATGACTCA 1 chr5:132576346-132576426 ( 36) ATGACTCA 1 chr5:10703236-10703316 ( 28) ATGACTCA 1 chr6:26026010-26026090 ( 46) ATGACTCA 1 chr2:47478276-47478356 ( 11) ATGACTCA 1 chr16:69564738-69564818 ( 14) ATGACTCA 1 chr6:91078855-91078935 ( 28) ATGACTCA 1 chr7:133768832-133768912 ( 62) ATGACTCA 1 chr9:97041234-97041314 ( 51) ATGACTCA 1 chr1:28827662-28827742 ( 34) ATGACTCA 1 chr1:244486398-244486478 ( 63) ATGACTCA 1 chr2:9692869-9692949 ( 25) ATGACTCA 1 chr15:79471562-79471642 ( 10) ATGACTCA 1 chr5:71530172-71530252 ( 9) ATGACTCA 1 chr1:87459182-87459262 ( 25) ATGACTCA 1 chr2:65233777-65233857 ( 47) ATGACTCA 1 chr5:174945012-174945092 ( 8) ATGACTCA 1 chr8:126676816-126676896 ( 71) ATGACTCA 1 chr5:142625746-142625826 ( 49) GTGAGTCA 1 chr7:12991278-12991358 ( 38) GTGAGTCA 1 chr6:17971873-17971953 ( 63) GTGAGTCA 1 chr16:3072424-3072504 ( 14) GTGAGTCA 1 chr2:69076946-69077026 ( 39) GTGAGTCA 1 chr10:65467205-65467285 ( 50) GTGAGTCA 1 chr22:21910408-21910488 ( 65) GTGAGTCA 1 chr12:104802456-10480253 ( 59) GTGAGTCA 1 chr1:67420677-67420757 ( 36) GTGAGTCA 1 chr19:21641060-21641140 ( 55) GTGAGTCA 1 chr7:29686786-29686866 ( 12) GTGAGTCA 1 chr20:57199066-57199146 ( 29) GTGAGTCA 1 chr3:43812274-43812354 ( 65) GTGAGTCA 1 chr1:207484687-207484767 ( 41) GTGAGTCA 1 chr16:75658854-75658934 ( 45) GTGAGTCA 1 chr10:3137764-3137844 ( 30) GTGAGTCA 1 chr8:59754782-59754862 ( 9) GTGAGTCA 1 chr7:86740254-86740334 ( 40) GTGAGTCA 1 chr19:2161399-2161479 ( 42) GTGAGTCA 1 chr6:136931567-136931647 ( 1) GTGAGTCA 1 chr6:34713325-34713405 ( 38) GTGAGTCA 1 chr2:12317265-12317345 ( 27) GTGAGTCA 1 chr18:9005621-9005701 ( 39) GTGAGTCA 1 chr6:3912271-3912351 ( 44) GTGAGTCA 1 chr7:26890115-26890195 ( 32) GTGAGTCA 1 chr8:66629746-66629826 ( 28) GTGAGTCA 1 chr2:219287343-219287423 ( 35) GTGACTCA 1 chr11:72032860-72032940 ( 45) GTGACTCA 1 chr8:29107601-29107681 ( 45) GTGACTCA 1 chrX:119683953-119684033 ( 13) GTGACTCA 1 chr10:76952031-76952111 ( 43) GTGACTCA 1 chr1:8933811-8933891 ( 26) GTGACTCA 1 chr3:196758477-196758557 ( 69) GTGACTCA 1 chr3:171242078-171242158 ( 41) GTGACTCA 1 chr11:44355038-44355118 ( 27) GTGACTCA 1 chr7:116105973-116106053 ( 34) GTGACTCA 1 chr20:34411182-34411262 ( 70) GTGACTCA 1 chr20:40325236-40325316 ( 53) GTGACTCA 1 chr9:124049441-124049521 ( 42) GTGACTCA 1 chr13:101045139-10104521 ( 27) GTGACTCA 1 chr1:44997939-44998019 ( 52) CTGAGTCA 1 chr10:30971450-30971530 ( 35) CTGAGTCA 1 chr2:43653698-43653778 ( 38) CTGAGTCA 1 chr11:96095093-96095173 ( 70) CTGAGTCA 1 chr10:75781151-75781231 ( 39) CTGAGTCA 1 chr1:224730688-224730768 ( 42) CTGAGTCA 1 chr11:61568280-61568360 ( 38) CTGAGTCA 1 chr3:39680907-39680987 ( 52) CTGAGTCA 1 chr1:172903201-172903281 ( 5) CTGAGTCA 1 chr22:40895277-40895357 ( 52) CTGAGTCA 1 chr11:107436845-10743692 ( 26) CTGAGTCA 1 chr1:26564171-26564251 ( 41) CTGAGTCA 1 chr19:13842064-13842144 ( 50) CTGAGTCA 1 chr16:20758411-20758491 ( 14) CTGACTCA 1 chr6:109705788-109705868 ( 50) CTGACTCA 1 chr8:67018085-67018165 ( 40) CTGACTCA 1 chr6:87395074-87395154 ( 10) CTGACTCA 1 chr4:8338323-8338403 ( 55) CTGACTCA 1 chr11:119465586-11946566 ( 33) CTGACTCA 1 chr2:64479923-64480003 ( 18) CTGACTCA 1 chr10:73857646-73857726 ( 49) CTGACTCA 1 chr9:37840715-37840795 ( 35) CTGACTCA 1 chr17:15862559-15862639 ( 52) CTGACTCA 1 chr2:170767044-170767124 ( 3) ATGATTCA 1 chr6:130173526-130173606 ( 54) ATGATTCA 1 chr1:32773128-32773208 ( 29) ATGATTCA 1 chr6:149440498-149440578 ( 37) ATGATTCA 1 chr5:112378700-112378780 ( 30) ATGAATCA 1 chr3:32182560-32182640 ( 59) ATGAATCA 1 chr6:10348170-10348250 ( 15) ATGAATCA 1 chr1:23441792-23441872 ( 55) ATGTGTCA 1 chr3:45709704-45709784 ( 30) CTGATTCA 1 chr10:11492604-11492684 ( 16) ATGACTAA 1 chr12:112811429-11281150 ( 65) ATGACTAA 1 chr8:74284053-74284133 ( 12) ATGACTAA 1 chr20:33301314-33301394 ( 32) GTGTGTCA 1 chr11:86235407-86235487 ( 56) CTGAATCA 1 chr1:32701787-32701867 ( 17) TTGAGTCA 1 chr11:9010278-9010358 ( 36) CTGTGTCA 1 chr7:32545996-32546076 ( 28) GTGACTAA 1 chr11:20389170-20389250 ( 36) CTGTCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.71255 E= 4.8e-207 98 -36 28 -538 -1390 -1390 -1390 187 -1390 -1390 215 -1390 183 -1390 -1390 -338 -339 95 116 -306 -1390 -1390 -1390 187 -339 210 -1390 -1390 187 -1390 -1390 -1390 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 153 E= 4.8e-207 0.542484 0.176471 0.274510 0.006536 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.973856 0.000000 0.000000 0.026144 0.026144 0.437908 0.503268 0.032680 0.000000 0.000000 0.000000 1.000000 0.026144 0.973856 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-1 regular expression -------------------------------------------------------------------------------- [AG]TGA[GC]TCA -------------------------------------------------------------------------------- Time 4.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACTCAY MEME-2 width = 8 sites = 56 llr = 471 E-value = 1.0e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACTCAY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::91 pos.-specific C :::7:a:4 probability G :8:3:::2 matrix T a2::a:13 bits 2.1 * 1.9 * ** 1.7 * * ** 1.5 *** *** Relative 1.3 ******* Entropy 1.1 ******* (12.1 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGACTCAC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCAY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:3072424-3072504 50 1.48e-05 GGTGAGGCTC TGACTCAC ACATTCTCAA chr7:155082902-155082982 68 1.48e-05 ttggccctgg tgactcac tccac chr9:125164824-125164904 56 1.48e-05 TTCTAATCTA TGACTCAC ACTCTGCATC chr1:8933811-8933891 13 1.48e-05 GCTAGGCCTG TGACTCAC AGATGGTGAC chr20:57199066-57199146 9 1.48e-05 AGAGCCGC TGACTCAC GCAGTGTCTG chr10:7070274-7070354 60 1.48e-05 actgatgcaa tgactcac taatgagtca chr16:69564738-69564818 3 1.48e-05 GC TGACTCAC CGGATGACTC chr13:101045139-10104521 11 1.48e-05 GAAGGTTGAG TGACTCAC CCagggaagt chr2:65233777-65233857 26 1.48e-05 ccaggcatgg tgactcac gcttgtaatc chr9:37840715-37840795 55 1.48e-05 cctcactcac tgactcac ccagagcaac chr6:17715435-17715515 63 3.26e-05 GAGTCAGCAG TGACTCAT AAGCACTTCC chr1:44997939-44998019 5 3.26e-05 ctgc tgactcat actgacctta chr7:123178335-123178415 59 3.26e-05 TCTAGAATAC TGACTCAT CTCTAGTCTC chr10:17071701-17071781 1 3.26e-05 . TGACTCAT CTGCCCAGGA chr4:8338323-8338403 43 3.26e-05 acaaccttct tgactcat cccactgact chr11:36171411-36171491 12 3.26e-05 CTGTTCCTCA TGACTCAT GTTCCTCATG chr5:132576346-132576426 18 3.26e-05 TCTTAGCGCA TGACTCAT CTCTTCGCGC chr6:91078855-91078935 42 3.26e-05 CTCAAGGTGG TGACTCAT TCAGCAACTA chr9:97041234-97041314 4 3.26e-05 GCG TGACTCAT CTTATCTGGA chr5:34924199-34924279 35 3.26e-05 AGTCACACAG TGACTCAT TCAGGAGAAA chr18:20248084-20248164 14 3.26e-05 AGTCATGCAG TGACTCAT AGCATCATCA chr14:23005995-23006075 36 4.73e-05 GAGTCAGGCG TGAGTCAC CCAAGACTCT chr7:99160629-99160709 60 4.73e-05 TACATTTCAG TGAGTCAC CCAGAATGGT chr8:145992888-145992968 70 4.73e-05 CTTACAGGCA TGAGTCAC TGC chr9:124049441-124049521 54 4.73e-05 GACTCAGCCC TGAGTCAC CGGGAGGCTG chr8:126676816-126676896 12 4.73e-05 TGGTGTCCGC TGAGTCAC CTGTGTCATT chr8:38895795-38895875 56 6.20e-05 atttcctcac tgactcag tctgccagga chr11:72032860-72032940 34 6.20e-05 CCTGAATCCC TGACTCAG ATGGTGACTC chr10:65467205-65467285 67 6.20e-05 AGTTTAGTCC TGACTCAG TTCCCA chr15:35849828-35849908 64 6.20e-05 TACAACACGA TGACTCAG CTTATCACT chr3:171242078-171242158 30 6.20e-05 ctgctgctgc tgactcag tgtgtgactc chr16:9141779-9141859 52 6.20e-05 GTGGAAATGA TGACTCAG CTCTGGGCCC chr17:39010612-39010692 24 7.97e-05 TTGTACAAAG TGAGTCAT CTCAAGTTGA chr6:42939013-42939093 33 7.97e-05 GCTCAACAGC TGAGTCAT GGTGTGTATG chr7:102632252-102632332 58 7.97e-05 GTGCGCAGTG TGAGTCAT GCCTGTAAGA chr15:79471562-79471642 49 7.97e-05 CTGTTTACAg tgagtcat cggagcccct chr4:96210544-96210624 26 1.12e-04 GCTGGCCAGC TTACTCAC TTTCTGACCT chr17:61538273-61538353 52 1.12e-04 GAGTCAAAGC TTACTCAC ATGTTCCTGG chr19:41172431-41172511 16 1.12e-04 TGGCAGGTGC TGAGTCAG TGGTACCTGT chr7:116141640-116141720 36 1.12e-04 tgccttcagc ttactcac agcctTATCA chr6:20458830-20458910 15 1.12e-04 CAGTGTAACT TTACTCAC TCTCCAAGCC chr19:11205860-11205940 69 1.12e-04 AATTGAGCTG TGAGTCAG TGAG chr8:66629746-66629826 13 1.12e-04 GGGCTTCTGC TTACTCAC TTGCAAGGTG chr10:30971450-30971530 14 1.30e-04 ACAAAATTGT TGACTCAA GGCCACCATC chr10:80218905-80218985 1 1.30e-04 . TGACTCAA TCCTCCCTCC chr14:31669481-31669561 44 1.52e-04 CTATCTCTCC TTACTCAT CCTTCCTAGC chr2:201270692-201270772 73 1.52e-04 CTGCTTCCTT TTACTCAT chr19:13842064-13842144 40 1.69e-04 CCTAATGGAA TTAGTCAC CACTGAGTCA chrX:119683953-119684033 61 2.05e-04 ACTTAGTCAT TGAGTCAA CACTATTTAT chr7:116105973-116106053 15 2.05e-04 CTAAAAATGC TGAGTCAA AAGCCTACCA chr2:64479923-64480003 6 2.20e-04 tttgc tgactctc ttttctgact chr5:10358119-10358199 29 2.53e-04 ggcgcgatct tggctcac taggggtcgc chr11:119465586-11946566 55 3.03e-04 AAGCTGTGTT TTAGTCAG ATAAGGAACA chr6:34713325-34713405 60 3.03e-04 gccggcgggg tggctcat gcctgtcatc chr1:27400853-27400933 33 3.18e-04 GGTGtgaccc tgagtctc aaagggaaat chr2:12317265-12317345 14 3.18e-04 CCTGTGCTAA TGAGTCTC CACTGGTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCAY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:3072424-3072504 1.5e-05 49_[+2]_23 chr7:155082902-155082982 1.5e-05 67_[+2]_5 chr9:125164824-125164904 1.5e-05 55_[+2]_17 chr1:8933811-8933891 1.5e-05 12_[+2]_60 chr20:57199066-57199146 1.5e-05 8_[+2]_64 chr10:7070274-7070354 1.5e-05 59_[+2]_13 chr16:69564738-69564818 1.5e-05 2_[+2]_70 chr13:101045139-10104521 1.5e-05 10_[+2]_62 chr2:65233777-65233857 1.5e-05 25_[+2]_47 chr9:37840715-37840795 1.5e-05 54_[+2]_18 chr6:17715435-17715515 3.3e-05 62_[+2]_10 chr1:44997939-44998019 3.3e-05 4_[+2]_68 chr7:123178335-123178415 3.3e-05 58_[+2]_14 chr10:17071701-17071781 3.3e-05 [+2]_72 chr4:8338323-8338403 3.3e-05 42_[+2]_30 chr11:36171411-36171491 3.3e-05 11_[+2]_61 chr5:132576346-132576426 3.3e-05 17_[+2]_55 chr6:91078855-91078935 3.3e-05 41_[+2]_31 chr9:97041234-97041314 3.3e-05 3_[+2]_69 chr5:34924199-34924279 3.3e-05 34_[+2]_38 chr18:20248084-20248164 3.3e-05 13_[+2]_59 chr14:23005995-23006075 4.7e-05 35_[+2]_37 chr7:99160629-99160709 4.7e-05 59_[+2]_13 chr8:145992888-145992968 4.7e-05 69_[+2]_3 chr9:124049441-124049521 4.7e-05 53_[+2]_19 chr8:126676816-126676896 4.7e-05 11_[+2]_61 chr8:38895795-38895875 6.2e-05 55_[+2]_17 chr11:72032860-72032940 6.2e-05 33_[+2]_39 chr10:65467205-65467285 6.2e-05 66_[+2]_6 chr15:35849828-35849908 6.2e-05 63_[+2]_9 chr3:171242078-171242158 6.2e-05 29_[+2]_43 chr16:9141779-9141859 6.2e-05 51_[+2]_21 chr17:39010612-39010692 8e-05 23_[+2]_49 chr6:42939013-42939093 8e-05 32_[+2]_40 chr7:102632252-102632332 8e-05 57_[+2]_15 chr15:79471562-79471642 8e-05 48_[+2]_24 chr4:96210544-96210624 0.00011 25_[+2]_47 chr17:61538273-61538353 0.00011 51_[+2]_21 chr19:41172431-41172511 0.00011 15_[+2]_57 chr7:116141640-116141720 0.00011 35_[+2]_37 chr6:20458830-20458910 0.00011 14_[+2]_58 chr19:11205860-11205940 0.00011 68_[+2]_4 chr8:66629746-66629826 0.00011 12_[+2]_60 chr10:30971450-30971530 0.00013 13_[+2]_59 chr10:80218905-80218985 0.00013 [+2]_72 chr14:31669481-31669561 0.00015 43_[+2]_29 chr2:201270692-201270772 0.00015 72_[+2] chr19:13842064-13842144 0.00017 39_[+2]_33 chrX:119683953-119684033 0.0002 60_[+2]_12 chr7:116105973-116106053 0.0002 14_[+2]_58 chr2:64479923-64480003 0.00022 5_[+2]_67 chr5:10358119-10358199 0.00025 28_[+2]_44 chr11:119465586-11946566 0.0003 54_[+2]_18 chr6:34713325-34713405 0.0003 59_[+2]_13 chr1:27400853-27400933 0.00032 32_[+2]_40 chr2:12317265-12317345 0.00032 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCAY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACTCAY width=8 seqs=56 chr16:3072424-3072504 ( 50) TGACTCAC 1 chr7:155082902-155082982 ( 68) TGACTCAC 1 chr9:125164824-125164904 ( 56) TGACTCAC 1 chr1:8933811-8933891 ( 13) TGACTCAC 1 chr20:57199066-57199146 ( 9) TGACTCAC 1 chr10:7070274-7070354 ( 60) TGACTCAC 1 chr16:69564738-69564818 ( 3) TGACTCAC 1 chr13:101045139-10104521 ( 11) TGACTCAC 1 chr2:65233777-65233857 ( 26) TGACTCAC 1 chr9:37840715-37840795 ( 55) TGACTCAC 1 chr6:17715435-17715515 ( 63) TGACTCAT 1 chr1:44997939-44998019 ( 5) TGACTCAT 1 chr7:123178335-123178415 ( 59) TGACTCAT 1 chr10:17071701-17071781 ( 1) TGACTCAT 1 chr4:8338323-8338403 ( 43) TGACTCAT 1 chr11:36171411-36171491 ( 12) TGACTCAT 1 chr5:132576346-132576426 ( 18) TGACTCAT 1 chr6:91078855-91078935 ( 42) TGACTCAT 1 chr9:97041234-97041314 ( 4) TGACTCAT 1 chr5:34924199-34924279 ( 35) TGACTCAT 1 chr18:20248084-20248164 ( 14) TGACTCAT 1 chr14:23005995-23006075 ( 36) TGAGTCAC 1 chr7:99160629-99160709 ( 60) TGAGTCAC 1 chr8:145992888-145992968 ( 70) TGAGTCAC 1 chr9:124049441-124049521 ( 54) TGAGTCAC 1 chr8:126676816-126676896 ( 12) TGAGTCAC 1 chr8:38895795-38895875 ( 56) TGACTCAG 1 chr11:72032860-72032940 ( 34) TGACTCAG 1 chr10:65467205-65467285 ( 67) TGACTCAG 1 chr15:35849828-35849908 ( 64) TGACTCAG 1 chr3:171242078-171242158 ( 30) TGACTCAG 1 chr16:9141779-9141859 ( 52) TGACTCAG 1 chr17:39010612-39010692 ( 24) TGAGTCAT 1 chr6:42939013-42939093 ( 33) TGAGTCAT 1 chr7:102632252-102632332 ( 58) TGAGTCAT 1 chr15:79471562-79471642 ( 49) TGAGTCAT 1 chr4:96210544-96210624 ( 26) TTACTCAC 1 chr17:61538273-61538353 ( 52) TTACTCAC 1 chr19:41172431-41172511 ( 16) TGAGTCAG 1 chr7:116141640-116141720 ( 36) TTACTCAC 1 chr6:20458830-20458910 ( 15) TTACTCAC 1 chr19:11205860-11205940 ( 69) TGAGTCAG 1 chr8:66629746-66629826 ( 13) TTACTCAC 1 chr10:30971450-30971530 ( 14) TGACTCAA 1 chr10:80218905-80218985 ( 1) TGACTCAA 1 chr14:31669481-31669561 ( 44) TTACTCAT 1 chr2:201270692-201270772 ( 73) TTACTCAT 1 chr19:13842064-13842144 ( 40) TTAGTCAC 1 chrX:119683953-119684033 ( 61) TGAGTCAA 1 chr7:116105973-116106053 ( 15) TGAGTCAA 1 chr2:64479923-64480003 ( 6) TGACTCTC 1 chr5:10358119-10358199 ( 29) TGGCTCAC 1 chr11:119465586-11946566 ( 55) TTAGTCAG 1 chr6:34713325-34713405 ( 60) TGGCTCAT 1 chr1:27400853-27400933 ( 33) TGAGTCTC 1 chr2:12317265-12317345 ( 14) TGAGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCAY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95106 E= 1.0e-025 -1245 -1245 -1245 187 -1245 -1245 190 -77 181 -1245 -266 -1245 -1245 162 43 -1245 -1245 -1245 -1245 187 -1245 214 -1245 -1245 179 -1245 -1245 -235 -194 98 -49 23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCAY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.0e-025 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.839286 0.160714 0.964286 0.000000 0.035714 0.000000 0.000000 0.696429 0.303571 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.946429 0.000000 0.000000 0.053571 0.071429 0.446429 0.160714 0.321429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACTCAY MEME-2 regular expression -------------------------------------------------------------------------------- TGA[CG]TCA[CT] -------------------------------------------------------------------------------- Time 8.00 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCWB MEME-3 width = 8 sites = 69 llr = 532 E-value = 2.7e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::a::31 pos.-specific C 6::::a:2 probability G 2::::::4 matrix T 1aa:a:72 bits 2.1 * 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.1 bits) 0.9 ****** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTTATCTG consensus AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:94130001-94130081 6 1.77e-05 TCTAT CTTATCTG AAAACATTGC chr17:71470661-71470741 52 1.77e-05 GGCTGCAGCT CTTATCTG TCTCTTGCTA chr2:100908723-100908803 34 1.77e-05 CAAGGAGCCT CTTATCTG tggacaggag chr7:150736627-150736707 70 1.77e-05 TGTGGGTATA CTTATCTG CAG chr9:108409929-108410009 44 1.77e-05 AGGCTGCACT CTTATCTG CTGCCCACAG chr1:67420677-67420757 49 1.77e-05 AGTCACACTT CTTATCTG TATATCCAGG chr3:16351284-16351364 14 1.77e-05 acctgctttc cttatctg tcgctgtggg chr9:97041234-97041314 12 1.77e-05 CGTGACTCAT CTTATCTG GAGTTTTCTC chrX:14083170-14083250 1 1.77e-05 . CTTATCTG AAGCGCCTTG chr12:94316404-94316484 7 3.55e-05 TCTCTG CTTATCTC ATCACCAAAA chr1:110955888-110955968 35 3.55e-05 gctagtgagc cttatctc tccctttccc chr8:21818099-21818179 35 3.55e-05 ACTTGCCATC CTTATCTC ATGCACGCCA chr12:45667720-45667800 20 3.55e-05 GGAGCTCATG CTTATCtc agcagcacgg chr5:132576346-132576426 2 3.55e-05 C CTTATCTC TTAGCGCATG chr6:130173526-130173606 10 3.55e-05 tttgcaaac cttatctc ctttaatcct chr3:196758477-196758557 44 3.55e-05 AAGTTCTTCC CTTATCTC TTGGGTGTCA chr10:80218905-80218985 20 3.55e-05 CCTCCCTCCA CTTATCTC TGTTTGAACA chr5:174945012-174945092 31 3.55e-05 CCCCCTACGC CTTATCTC TCCCCAAGTG chr8:8932700-8932780 18 5.33e-05 ACCAAAACAT CTTATCAG CTGAGCCCAG chr5:139597284-139597364 10 5.33e-05 ATATTTTTC CTTATCAG TGCTTTGCAG chr2:170870546-170870626 10 5.33e-05 ACAGATGCC CTTATCAG CAGCAACCAG chr17:39686582-39686662 8 5.33e-05 TCATTCC CTTATCAG GCACTGATGA chr1:39583033-39583113 41 5.33e-05 AAGCTGGACT CTTATCAG ATAAACTTGC chr7:116141640-116141720 47 5.33e-05 tactcacagc ctTATCAG GGCAGCTGGC chr11:44355038-44355118 38 5.33e-05 tgactcaaCT CTTATCAG TGACCTTAGG chr12:46613783-46613863 16 5.33e-05 TTAGAACCCC CTTATCAG ATGCATCACA chr7:143189245-143189325 7 5.33e-05 catgac cttatcag gggagttttc chr16:71526060-71526140 50 7.47e-05 aacataagct cttatctt tcttaaacat chr11:9010278-9010358 55 7.47e-05 GTCTCACTCT CTTATCTT TCAGATGCAG chr10:66268022-66268102 32 7.47e-05 AATAGCACTT CTTATCTT TGTTCCGTTG chr9:125209206-125209286 39 7.47e-05 aaggaaatca cttatctt ctaacaataa chr7:116105973-116106053 48 7.47e-05 CTCATCCTTT CTTATCTT CTTTTTCCAC chr15:35849828-35849908 72 9.26e-05 GATGACTCAG CTTATCAC T chr1:153031947-153032027 42 9.26e-05 CAACAGGAGG CTTATCAC ACCAGTGCAG chr9:130841350-130841430 53 1.14e-04 TAAGGAGCTT CTTATCTA CTTTAAGCTC chr4:96210544-96210624 6 1.53e-04 ATGTT GTTATCTG CTGCTGGCCA chr10:13446401-13446481 45 1.53e-04 ATTAAAACTG CTTATCAT CTTAAGTTTT chr1:100813069-100813149 16 1.53e-04 AGGCTAAGGT CTTATCAT TTGCGGGCAG chr11:96095093-96095173 45 1.53e-04 GTTAAGCACA GTTATCTG ACCTGATAAA chr3:183128149-183128229 49 1.53e-04 CAGATCATTT GTTATCTG GATAAAGCAG chr8:61242937-61243017 53 1.53e-04 ctgaaccaac cttatcat actagtgcac chr1:44997939-44998019 19 2.35e-04 tcatactgac cttatcaa ctaaaacccc chr2:202652377-202652457 36 2.35e-04 gaactaaggg tttatctg agtgatacag chr6:26026010-26026090 35 2.35e-04 tcagcattta tttatctg ctgatgactc chr16:75658854-75658934 61 2.35e-04 catgttcctt gttatctc ccttccctta chr3:32182560-32182640 38 2.35e-04 TACTTTCACC CTTATCAA ACCTGCAAGC chr5:70681176-70681256 52 2.53e-04 ACGATTTCAC GTTATCAG TGCAGTTCGG chr1:75938264-75938344 12 2.74e-04 AAGACCATGT GTTATCTT ATGATAACAT chr6:130160765-130160845 16 2.96e-04 aggaagtcaa attatctc tgtttgcaga chr1:52035539-52035619 48 2.96e-04 caaaatgagt attatctc cactttacaa chr12:95910731-95910811 70 3.17e-04 ACCCAGTGAG ATTATCAG AAG chr1:167199173-167199253 2 3.64e-04 T ATTATCTT TACTACTTCC chr2:182675691-182675771 43 3.64e-04 TGAGGGCCTG ATTATCTT TCTTCATATC chr6:87395074-87395154 35 3.64e-04 taggacatga attatctt tttgtctagc chr19:21641060-21641140 27 3.64e-04 tgcagataac attatctt agtcctcgca chr6:149440498-149440578 68 3.64e-04 CAGTTTGTAC TTTATCTC TTCCT chr3:39680907-39680987 28 3.64e-04 AGACTTCCTC ATTATCTT AATAAAAGGA chr8:126676816-126676896 33 3.64e-04 TGTCATTCCT ATTATCTT ATTTACCCAT chr19:41172431-41172511 54 4.04e-04 TGACTCAGAG GTTATCAC TCAGGGACAT chr3:43812274-43812354 38 4.04e-04 GCTCGAGTTC TTTATCAG GCTGTGACAG chr1:117300798-117300878 30 4.04e-04 TTAAAAATAT TTTATCAG CTTGTACAAT chr4:82342791-82342871 43 4.51e-04 CAAGTTATAT GTTATCTA TGTCAACAAG chr18:8913738-8913818 69 4.51e-04 aatcggttat gttatcta taga chr1:38999681-38999761 18 4.51e-04 tatttcactt tttatctt tTGAAGGCAC chr11:100840545-10084062 11 5.20e-04 ggcagttttt attatcta ctttttgcct chrX:70670709-70670789 66 5.93e-04 gaacacatac tttatcta agaggaa chr6:134516836-134516916 7 5.93e-04 CAATAT TTTATCTA AATGACTAGG chr3:4940391-4940471 67 6.40e-04 CTCATCAGTT GTTATCAA ACCGGT chr5:176421981-176422061 47 6.40e-04 ttcagatagt gttatcaa ggctctgcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:94130001-94130081 1.8e-05 5_[+3]_67 chr17:71470661-71470741 1.8e-05 51_[+3]_21 chr2:100908723-100908803 1.8e-05 33_[+3]_39 chr7:150736627-150736707 1.8e-05 69_[+3]_3 chr9:108409929-108410009 1.8e-05 43_[+3]_29 chr1:67420677-67420757 1.8e-05 48_[+3]_24 chr3:16351284-16351364 1.8e-05 13_[+3]_59 chr9:97041234-97041314 1.8e-05 11_[+3]_61 chrX:14083170-14083250 1.8e-05 [+3]_72 chr12:94316404-94316484 3.6e-05 6_[+3]_66 chr1:110955888-110955968 3.6e-05 34_[+3]_38 chr8:21818099-21818179 3.6e-05 34_[+3]_38 chr12:45667720-45667800 3.6e-05 19_[+3]_53 chr5:132576346-132576426 3.6e-05 1_[+3]_71 chr6:130173526-130173606 3.6e-05 9_[+3]_63 chr3:196758477-196758557 3.6e-05 43_[+3]_29 chr10:80218905-80218985 3.6e-05 19_[+3]_53 chr5:174945012-174945092 3.6e-05 30_[+3]_42 chr8:8932700-8932780 5.3e-05 17_[+3]_55 chr5:139597284-139597364 5.3e-05 9_[+3]_63 chr2:170870546-170870626 5.3e-05 9_[+3]_63 chr17:39686582-39686662 5.3e-05 7_[+3]_65 chr1:39583033-39583113 5.3e-05 40_[+3]_32 chr7:116141640-116141720 5.3e-05 46_[+3]_26 chr11:44355038-44355118 5.3e-05 37_[+3]_35 chr12:46613783-46613863 5.3e-05 15_[+3]_57 chr7:143189245-143189325 5.3e-05 6_[+3]_66 chr16:71526060-71526140 7.5e-05 49_[+3]_23 chr11:9010278-9010358 7.5e-05 54_[+3]_18 chr10:66268022-66268102 7.5e-05 31_[+3]_41 chr9:125209206-125209286 7.5e-05 38_[+3]_34 chr7:116105973-116106053 7.5e-05 47_[+3]_25 chr15:35849828-35849908 9.3e-05 71_[+3]_1 chr1:153031947-153032027 9.3e-05 41_[+3]_31 chr9:130841350-130841430 0.00011 52_[+3]_20 chr4:96210544-96210624 0.00015 5_[+3]_67 chr10:13446401-13446481 0.00015 44_[+3]_28 chr1:100813069-100813149 0.00015 15_[+3]_57 chr11:96095093-96095173 0.00015 44_[+3]_28 chr3:183128149-183128229 0.00015 48_[+3]_24 chr8:61242937-61243017 0.00015 52_[+3]_20 chr1:44997939-44998019 0.00024 18_[+3]_54 chr2:202652377-202652457 0.00024 35_[+3]_37 chr6:26026010-26026090 0.00024 34_[+3]_38 chr16:75658854-75658934 0.00024 60_[+3]_12 chr3:32182560-32182640 0.00024 37_[+3]_35 chr5:70681176-70681256 0.00025 51_[+3]_21 chr1:75938264-75938344 0.00027 11_[+3]_61 chr6:130160765-130160845 0.0003 15_[+3]_57 chr1:52035539-52035619 0.0003 47_[+3]_25 chr12:95910731-95910811 0.00032 69_[+3]_3 chr1:167199173-167199253 0.00036 1_[+3]_71 chr2:182675691-182675771 0.00036 42_[+3]_30 chr6:87395074-87395154 0.00036 34_[+3]_38 chr19:21641060-21641140 0.00036 26_[+3]_46 chr6:149440498-149440578 0.00036 67_[+3]_5 chr3:39680907-39680987 0.00036 27_[+3]_45 chr8:126676816-126676896 0.00036 32_[+3]_40 chr19:41172431-41172511 0.0004 53_[+3]_19 chr3:43812274-43812354 0.0004 37_[+3]_35 chr1:117300798-117300878 0.0004 29_[+3]_43 chr4:82342791-82342871 0.00045 42_[+3]_30 chr18:8913738-8913818 0.00045 68_[+3]_4 chr1:38999681-38999761 0.00045 17_[+3]_55 chr11:100840545-10084062 0.00052 10_[+3]_62 chrX:70670709-70670789 0.00059 65_[+3]_7 chr6:134516836-134516916 0.00059 6_[+3]_66 chr3:4940391-4940471 0.00064 66_[+3]_6 chr5:176421981-176422061 0.00064 46_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCWB width=8 seqs=69 chr1:94130001-94130081 ( 6) CTTATCTG 1 chr17:71470661-71470741 ( 52) CTTATCTG 1 chr2:100908723-100908803 ( 34) CTTATCTG 1 chr7:150736627-150736707 ( 70) CTTATCTG 1 chr9:108409929-108410009 ( 44) CTTATCTG 1 chr1:67420677-67420757 ( 49) CTTATCTG 1 chr3:16351284-16351364 ( 14) CTTATCTG 1 chr9:97041234-97041314 ( 12) CTTATCTG 1 chrX:14083170-14083250 ( 1) CTTATCTG 1 chr12:94316404-94316484 ( 7) CTTATCTC 1 chr1:110955888-110955968 ( 35) CTTATCTC 1 chr8:21818099-21818179 ( 35) CTTATCTC 1 chr12:45667720-45667800 ( 20) CTTATCTC 1 chr5:132576346-132576426 ( 2) CTTATCTC 1 chr6:130173526-130173606 ( 10) CTTATCTC 1 chr3:196758477-196758557 ( 44) CTTATCTC 1 chr10:80218905-80218985 ( 20) CTTATCTC 1 chr5:174945012-174945092 ( 31) CTTATCTC 1 chr8:8932700-8932780 ( 18) CTTATCAG 1 chr5:139597284-139597364 ( 10) CTTATCAG 1 chr2:170870546-170870626 ( 10) CTTATCAG 1 chr17:39686582-39686662 ( 8) CTTATCAG 1 chr1:39583033-39583113 ( 41) CTTATCAG 1 chr7:116141640-116141720 ( 47) CTTATCAG 1 chr11:44355038-44355118 ( 38) CTTATCAG 1 chr12:46613783-46613863 ( 16) CTTATCAG 1 chr7:143189245-143189325 ( 7) CTTATCAG 1 chr16:71526060-71526140 ( 50) CTTATCTT 1 chr11:9010278-9010358 ( 55) CTTATCTT 1 chr10:66268022-66268102 ( 32) CTTATCTT 1 chr9:125209206-125209286 ( 39) CTTATCTT 1 chr7:116105973-116106053 ( 48) CTTATCTT 1 chr15:35849828-35849908 ( 72) CTTATCAC 1 chr1:153031947-153032027 ( 42) CTTATCAC 1 chr9:130841350-130841430 ( 53) CTTATCTA 1 chr4:96210544-96210624 ( 6) GTTATCTG 1 chr10:13446401-13446481 ( 45) CTTATCAT 1 chr1:100813069-100813149 ( 16) CTTATCAT 1 chr11:96095093-96095173 ( 45) GTTATCTG 1 chr3:183128149-183128229 ( 49) GTTATCTG 1 chr8:61242937-61243017 ( 53) CTTATCAT 1 chr1:44997939-44998019 ( 19) CTTATCAA 1 chr2:202652377-202652457 ( 36) TTTATCTG 1 chr6:26026010-26026090 ( 35) TTTATCTG 1 chr16:75658854-75658934 ( 61) GTTATCTC 1 chr3:32182560-32182640 ( 38) CTTATCAA 1 chr5:70681176-70681256 ( 52) GTTATCAG 1 chr1:75938264-75938344 ( 12) GTTATCTT 1 chr6:130160765-130160845 ( 16) ATTATCTC 1 chr1:52035539-52035619 ( 48) ATTATCTC 1 chr12:95910731-95910811 ( 70) ATTATCAG 1 chr1:167199173-167199253 ( 2) ATTATCTT 1 chr2:182675691-182675771 ( 43) ATTATCTT 1 chr6:87395074-87395154 ( 35) ATTATCTT 1 chr19:21641060-21641140 ( 27) ATTATCTT 1 chr6:149440498-149440578 ( 68) TTTATCTC 1 chr3:39680907-39680987 ( 28) ATTATCTT 1 chr8:126676816-126676896 ( 33) ATTATCTT 1 chr19:41172431-41172511 ( 54) GTTATCAC 1 chr3:43812274-43812354 ( 38) TTTATCAG 1 chr1:117300798-117300878 ( 30) TTTATCAG 1 chr4:82342791-82342871 ( 43) GTTATCTA 1 chr18:8913738-8913818 ( 69) GTTATCTA 1 chr1:38999681-38999761 ( 18) TTTATCTT 1 chr11:100840545-10084062 ( 11) ATTATCTA 1 chrX:70670709-70670789 ( 66) TTTATCTA 1 chr6:134516836-134516916 ( 7) TTTATCTA 1 chr3:4940391-4940471 ( 67) GTTATCAA 1 chr5:176421981-176422061 ( 47) GTTATCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 2.7e-021 -92 135 -50 -124 -1275 -1275 -1275 187 -1275 -1275 -1275 187 187 -1275 -1275 -1275 -1275 -1275 -1275 187 -1275 214 -1275 -1275 28 -1275 -1275 129 -92 3 79 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.7e-021 0.144928 0.579710 0.159420 0.115942 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.144928 0.231884 0.391304 0.231884 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCWB MEME-3 regular expression -------------------------------------------------------------------------------- CTTATC[TA][GCT] -------------------------------------------------------------------------------- Time 11.37 secs. ******************************************************************************** ******************************************************************************** MOTIF VAGATAAG MEME-4 width = 8 sites = 57 llr = 446 E-value = 1.2e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAGATAAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3a:a2aa2 pos.-specific C 2::::::2 probability G 4:a:1::6 matrix T 1:::7::: bits 2.1 * 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** (11.3 bits) 0.9 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GAGATAAG consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:28655574-28655654 39 1.78e-05 ctttgcagtt gagataag aggaaggcat chr15:35459100-35459180 14 1.78e-05 GAGCTTAAGA GAGATAAG ACATGACTTT chr20:33301314-33301394 58 1.78e-05 AGGAAGAGGG GAGATAAG CTTACTGGGA chr7:10747333-10747413 10 1.78e-05 caggctaga gagataag gccttctggt chr10:11492604-11492684 6 1.78e-05 AAGCT GAGATAAG AAATGACTAA chr5:37672421-37672501 44 1.78e-05 tcttgtggtt gagataag aggaaggcct chr22:41107703-41107783 30 1.78e-05 tatctaaacc gagataag ctgcagtgca chr18:9005621-9005701 26 1.78e-05 CTGCAGGACA GAGATAAG AAGCAGTGAG chr18:32690719-32690799 49 3.93e-05 gtggcctcca aagataag aagtgcatac chr6:28514920-28515000 37 3.93e-05 tctgcacagc aagataag taatcagcag chrX:70670709-70670789 18 3.93e-05 gtctaggcag aagataag cagacttggg chr7:88319301-88319381 68 3.93e-05 gggagaatga aagataag aatcg chr10:73857646-73857726 37 3.93e-05 AAATAAATAG AAGATAAG GCTCCTGACT chr2:69828423-69828503 65 3.93e-05 GTTGTCTGAT AAGATAAG TCTGTAGC chr1:44514093-44514173 28 3.93e-05 TATGGGAAGG AAGATAAG AACAGATGAG chr12:96769880-96769960 42 5.71e-05 cctgctcagg cagataag agctacaaaa chr8:67018085-67018165 26 5.71e-05 agcagcttca cagataag ggcagtctga chr14:54902365-54902445 70 5.71e-05 CTAGATATGG CAGATAAG TCC chr10:88785467-88785547 35 5.71e-05 TCGCAGAGAT CAGATAAG CATTTCTGCT chr6:144126070-144126150 56 5.71e-05 cctggttttc cagataag aaaattgggg chr3:139058302-139058382 44 7.87e-05 TGGAAAATTG GAGATAAA CTGATAACTC chr6:45262233-45262313 3 7.87e-05 aa gagataaa gggcatccac chr2:38591466-38591546 57 7.87e-05 CTGTGTTGCA GAGATAAA CTCAAAGTGA chr5:112378700-112378780 61 7.87e-05 CTTGCAGGAG GAGATAAA GAACTGGGGG chr11:107436845-10743692 48 7.87e-05 tctgctcact gagataaa tgcatatctg chr5:142625746-142625826 25 1.14e-04 ACTCCAGAAA GAGAAAAG GACTTCTTTG chr17:61538273-61538353 26 1.14e-04 TAGGCAATAG GAGAAAAG ACAGATATGA chr5:34924199-34924279 47 1.14e-04 ACTCATTCAG GAGAAAAG AGGAGGTGAC chr2:196351915-196351995 23 1.36e-04 CTGAATTCAT TAGATAAG GGAAATGAGT chr15:35849828-35849908 5 1.36e-04 TGGG TAGATAAG TGAAGAAGAT chr3:33984151-33984231 47 1.36e-04 GTGGTGCGAT TAGATAAG AGATGAGTCA chr8:66629746-66629826 40 1.36e-04 GAGTCATTAG TAGATAAG CTCGGACTGA chr3:179093048-179093128 72 1.62e-04 CTGGCAGCTG AAGATAAA A chr12:95910731-95910811 26 1.62e-04 CTCTCCAAAT AAGATAAA GTTAGCAGCA chr11:32408444-32408524 49 1.62e-04 CTGGCAGGAA AAGATAAA AACGGCTGAT chr2:170767044-170767124 27 2.05e-04 CTATGAAGTA AAGATAAC AGAGAGAAAA chr2:43653698-43653778 58 2.05e-04 TCTGTGATCA AAGATAAC ACAGCCACAG chr10:75781151-75781231 18 2.05e-04 CTGTCAGAAC AAGAAAAG ATAGATAAAA chr17:53421930-53422010 31 2.05e-04 AGAGGGTACA AAGATAAC AATCAGAACT chr6:34713325-34713405 19 2.05e-04 ATATCTATCT AAGAAAAG ACATTTCAAG chr21:16002947-16003027 19 2.05e-04 ATAAAAATGA AAGAAAAG TGCAGTCTTT chr1:32773128-32773208 18 2.27e-04 gtggatatgc cagataaa gggatgattc chr8:91200048-91200128 27 2.63e-04 TGTGCAAATG CAGATAAC TGCCTGTCTT chr7:150736627-150736707 50 2.63e-04 ACTGTCTAGA CAGATAAC ACTGTGGGTA chr19:21641060-21641140 19 2.63e-04 cctggctttg cagataac attatcttag chr1:172903201-172903281 20 2.63e-04 TCATGCTGGC CAGATAAC TATCAGAAGG chr1:4067785-4067865 28 2.84e-04 gagacagaca gagaaaaa gatacagaga chr8:61242937-61243017 19 2.84e-04 acagtcagag gagaaaaa gaagaggaac chr3:25645822-25645902 19 3.43e-04 CTGTGAAAAA GAGAGAAG CTGCATGACT chr20:5700702-5700782 64 3.43e-04 AAGCAACCAA TAGATAAA GCAGCAAGG chr1:45173726-45173806 61 3.43e-04 GAAGTTAAGG GAGAGAAG AAATTCGCAC chr7:29686786-29686866 56 3.86e-04 gtgcatcctt tagataac tgccactctg chr7:102632252-102632332 2 4.12e-04 A AAGAAAAA TACTTAACAA chr1:169281661-169281741 71 4.52e-04 ATATTCTCAA AAGAAAAC AA chr6:149440498-149440578 25 4.52e-04 GAAATGAAGG AAGAGAAG TTGTATGATT chr1:21965184-21965264 36 4.73e-04 tttgtgtaat cagaaaaa aaTTAAAGAT chr6:130160765-130160845 51 6.04e-04 attgtatatt tagaaaac cccattgtct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:28655574-28655654 1.8e-05 38_[+4]_34 chr15:35459100-35459180 1.8e-05 13_[+4]_59 chr20:33301314-33301394 1.8e-05 57_[+4]_15 chr7:10747333-10747413 1.8e-05 9_[+4]_63 chr10:11492604-11492684 1.8e-05 5_[+4]_67 chr5:37672421-37672501 1.8e-05 43_[+4]_29 chr22:41107703-41107783 1.8e-05 29_[+4]_43 chr18:9005621-9005701 1.8e-05 25_[+4]_47 chr18:32690719-32690799 3.9e-05 48_[+4]_24 chr6:28514920-28515000 3.9e-05 36_[+4]_36 chrX:70670709-70670789 3.9e-05 17_[+4]_55 chr7:88319301-88319381 3.9e-05 67_[+4]_5 chr10:73857646-73857726 3.9e-05 36_[+4]_36 chr2:69828423-69828503 3.9e-05 64_[+4]_8 chr1:44514093-44514173 3.9e-05 27_[+4]_45 chr12:96769880-96769960 5.7e-05 41_[+4]_31 chr8:67018085-67018165 5.7e-05 25_[+4]_47 chr14:54902365-54902445 5.7e-05 69_[+4]_3 chr10:88785467-88785547 5.7e-05 34_[+4]_38 chr6:144126070-144126150 5.7e-05 55_[+4]_17 chr3:139058302-139058382 7.9e-05 43_[+4]_29 chr6:45262233-45262313 7.9e-05 2_[+4]_70 chr2:38591466-38591546 7.9e-05 56_[+4]_16 chr5:112378700-112378780 7.9e-05 60_[+4]_12 chr11:107436845-10743692 7.9e-05 47_[+4]_25 chr5:142625746-142625826 0.00011 24_[+4]_48 chr17:61538273-61538353 0.00011 25_[+4]_47 chr5:34924199-34924279 0.00011 46_[+4]_26 chr2:196351915-196351995 0.00014 22_[+4]_50 chr15:35849828-35849908 0.00014 4_[+4]_68 chr3:33984151-33984231 0.00014 46_[+4]_26 chr8:66629746-66629826 0.00014 39_[+4]_33 chr3:179093048-179093128 0.00016 71_[+4]_1 chr12:95910731-95910811 0.00016 25_[+4]_47 chr11:32408444-32408524 0.00016 48_[+4]_24 chr2:170767044-170767124 0.00021 26_[+4]_46 chr2:43653698-43653778 0.00021 57_[+4]_15 chr10:75781151-75781231 0.00021 17_[+4]_55 chr17:53421930-53422010 0.00021 30_[+4]_42 chr6:34713325-34713405 0.00021 18_[+4]_54 chr21:16002947-16003027 0.00021 18_[+4]_54 chr1:32773128-32773208 0.00023 17_[+4]_55 chr8:91200048-91200128 0.00026 26_[+4]_46 chr7:150736627-150736707 0.00026 49_[+4]_23 chr19:21641060-21641140 0.00026 18_[+4]_54 chr1:172903201-172903281 0.00026 19_[+4]_53 chr1:4067785-4067865 0.00028 27_[+4]_45 chr8:61242937-61243017 0.00028 18_[+4]_54 chr3:25645822-25645902 0.00034 18_[+4]_54 chr20:5700702-5700782 0.00034 63_[+4]_9 chr1:45173726-45173806 0.00034 60_[+4]_12 chr7:29686786-29686866 0.00039 55_[+4]_17 chr7:102632252-102632332 0.00041 1_[+4]_71 chr1:169281661-169281741 0.00045 70_[+4]_2 chr6:149440498-149440578 0.00045 24_[+4]_48 chr1:21965184-21965264 0.00047 35_[+4]_37 chr6:130160765-130160845 0.0006 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAGATAAG width=8 seqs=57 chr6:28655574-28655654 ( 39) GAGATAAG 1 chr15:35459100-35459180 ( 14) GAGATAAG 1 chr20:33301314-33301394 ( 58) GAGATAAG 1 chr7:10747333-10747413 ( 10) GAGATAAG 1 chr10:11492604-11492684 ( 6) GAGATAAG 1 chr5:37672421-37672501 ( 44) GAGATAAG 1 chr22:41107703-41107783 ( 30) GAGATAAG 1 chr18:9005621-9005701 ( 26) GAGATAAG 1 chr18:32690719-32690799 ( 49) AAGATAAG 1 chr6:28514920-28515000 ( 37) AAGATAAG 1 chrX:70670709-70670789 ( 18) AAGATAAG 1 chr7:88319301-88319381 ( 68) AAGATAAG 1 chr10:73857646-73857726 ( 37) AAGATAAG 1 chr2:69828423-69828503 ( 65) AAGATAAG 1 chr1:44514093-44514173 ( 28) AAGATAAG 1 chr12:96769880-96769960 ( 42) CAGATAAG 1 chr8:67018085-67018165 ( 26) CAGATAAG 1 chr14:54902365-54902445 ( 70) CAGATAAG 1 chr10:88785467-88785547 ( 35) CAGATAAG 1 chr6:144126070-144126150 ( 56) CAGATAAG 1 chr3:139058302-139058382 ( 44) GAGATAAA 1 chr6:45262233-45262313 ( 3) GAGATAAA 1 chr2:38591466-38591546 ( 57) GAGATAAA 1 chr5:112378700-112378780 ( 61) GAGATAAA 1 chr11:107436845-10743692 ( 48) GAGATAAA 1 chr5:142625746-142625826 ( 25) GAGAAAAG 1 chr17:61538273-61538353 ( 26) GAGAAAAG 1 chr5:34924199-34924279 ( 47) GAGAAAAG 1 chr2:196351915-196351995 ( 23) TAGATAAG 1 chr15:35849828-35849908 ( 5) TAGATAAG 1 chr3:33984151-33984231 ( 47) TAGATAAG 1 chr8:66629746-66629826 ( 40) TAGATAAG 1 chr3:179093048-179093128 ( 72) AAGATAAA 1 chr12:95910731-95910811 ( 26) AAGATAAA 1 chr11:32408444-32408524 ( 49) AAGATAAA 1 chr2:170767044-170767124 ( 27) AAGATAAC 1 chr2:43653698-43653778 ( 58) AAGATAAC 1 chr10:75781151-75781231 ( 18) AAGAAAAG 1 chr17:53421930-53422010 ( 31) AAGATAAC 1 chr6:34713325-34713405 ( 19) AAGAAAAG 1 chr21:16002947-16003027 ( 19) AAGAAAAG 1 chr1:32773128-32773208 ( 18) CAGATAAA 1 chr8:91200048-91200128 ( 27) CAGATAAC 1 chr7:150736627-150736707 ( 50) CAGATAAC 1 chr19:21641060-21641140 ( 19) CAGATAAC 1 chr1:172903201-172903281 ( 20) CAGATAAC 1 chr1:4067785-4067865 ( 28) GAGAAAAA 1 chr8:61242937-61243017 ( 19) GAGAAAAA 1 chr3:25645822-25645902 ( 19) GAGAGAAG 1 chr20:5700702-5700782 ( 64) TAGATAAA 1 chr1:45173726-45173806 ( 61) GAGAGAAG 1 chr7:29686786-29686866 ( 56) TAGATAAC 1 chr7:102632252-102632332 ( 2) AAGAAAAA 1 chr1:169281661-169281741 ( 71) AAGAAAAC 1 chr6:149440498-149440578 ( 25) AAGAGAAG 1 chr1:21965184-21965264 ( 36) CAGAAAAA 1 chr6:130160765-130160845 ( 51) TAGAAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 1.2e-012 28 -23 64 -115 187 -1248 -1248 -1248 -1248 -1248 215 -1248 187 -1248 -1248 -1248 -38 -1248 -210 143 187 -1248 -1248 -1248 187 -1248 -1248 -1248 -16 -37 136 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.2e-012 0.333333 0.192982 0.350877 0.122807 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.210526 0.000000 0.052632 0.736842 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.245614 0.175439 0.578947 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]AGA[TA]AA[GA] -------------------------------------------------------------------------------- Time 14.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGCTG MEME-5 width = 8 sites = 8 llr = 86 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1a::::: pos.-specific C :::::a:: probability G 99:aa::a matrix T 1:::::a: bits 2.1 *** * 1.9 ****** 1.7 ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:4940391-4940471 10 1.00e-05 GGGGAATAA GGAGGCTG CTTATTAAGC chr22:21910408-21910488 6 1.00e-05 acttg ggaggctg aggtgggaag chr20:57199066-57199146 48 1.00e-05 TGGCTGAGCC GGAGGCTG CGGGGGCCGC chr1:52035539-52035619 69 1.00e-05 tttacaatca ggaggctg agtc chr9:124049441-124049521 64 1.00e-05 TGAGTCACCG GGAGGCTG AGGACAGGG chr7:26890115-26890195 16 1.00e-05 aggagctggg ggaggctg aggctgcagt chr10:76952031-76952111 10 3.42e-05 TCTTGGCTC TGAGGCTG CTAGATTTTA chr2:65233777-65233857 55 3.42e-05 caatgactca gaaggctg aggtgggagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:4940391-4940471 1e-05 9_[+5]_63 chr22:21910408-21910488 1e-05 5_[+5]_67 chr20:57199066-57199146 1e-05 47_[+5]_25 chr1:52035539-52035619 1e-05 68_[+5]_4 chr9:124049441-124049521 1e-05 63_[+5]_9 chr7:26890115-26890195 1e-05 15_[+5]_57 chr10:76952031-76952111 3.4e-05 9_[+5]_63 chr2:65233777-65233857 3.4e-05 54_[+5]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGCTG width=8 seqs=8 chr3:4940391-4940471 ( 10) GGAGGCTG 1 chr22:21910408-21910488 ( 6) GGAGGCTG 1 chr20:57199066-57199146 ( 48) GGAGGCTG 1 chr1:52035539-52035619 ( 69) GGAGGCTG 1 chr9:124049441-124049521 ( 64) GGAGGCTG 1 chr7:26890115-26890195 ( 16) GGAGGCTG 1 chr10:76952031-76952111 ( 10) TGAGGCTG 1 chr2:65233777-65233857 ( 55) GAAGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 4.0e+003 -965 -965 195 -113 -113 -965 195 -965 186 -965 -965 -965 -965 -965 215 -965 -965 -965 215 -965 -965 214 -965 -965 -965 -965 -965 187 -965 -965 215 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.0e+003 0.000000 0.000000 0.875000 0.125000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGCTG MEME-5 regular expression -------------------------------------------------------------------------------- GGAGGCTG -------------------------------------------------------------------------------- Time 17.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:150481816-150481896 1.00e+00 80 chr15:34908964-34909044 1.63e-03 46_[+1(1.78e-05)]_26 chr19:13842064-13842144 9.46e-03 50_[+2(7.97e-05)]_22 chr7:148400638-148400718 3.66e-01 80 chr8:126676816-126676896 2.16e-04 11_[+2(4.73e-05)]_52_[+2(1.48e-05)]_\ 1 chr5:174945012-174945092 1.87e-05 8_[+2(3.26e-05)]_14_[+3(3.55e-05)]_\ 42 chr17:15862559-15862639 1.76e-03 52_[+2(3.26e-05)]_20 chr2:98527885-98527965 7.30e-01 80 chr9:37840715-37840795 4.51e-03 35_[+2(1.48e-05)]_11_[+2(1.48e-05)]_\ 18 chr18:20248084-20248164 1.34e-03 [+1(1.78e-05)]_5_[+2(3.26e-05)]_59 chr8:66629746-66629826 2.74e-04 27_[+1(5.03e-05)]_45 chr7:26890115-26890195 4.09e-05 15_[+5(1.00e-05)]_8_[+1(5.03e-05)]_\ 41 chr5:34924199-34924279 8.36e-05 21_[+1(1.78e-05)]_5_[+2(3.26e-05)]_\ 38 chr2:65233777-65233857 1.03e-05 25_[+2(1.48e-05)]_13_[+1(3.56e-05)]_\ [+5(3.42e-05)]_18 chr13:101045139-10104521 3.96e-04 10_[+2(1.48e-05)]_9_[+2(1.48e-05)]_\ 15_[+2(1.48e-05)]_22 chr8:103597600-103597680 5.04e-02 80 chr1:110473871-110473951 2.90e-01 80 chr1:87459182-87459262 1.69e-03 24_[+1(3.56e-05)]_48 chr1:26564171-26564251 1.14e-02 41_[+2(7.97e-05)]_31 chr1:117300798-117300878 6.73e-02 80 chr5:71530172-71530252 9.91e-05 9_[+2(3.26e-05)]_63 chr21:16002947-16003027 2.13e-02 80 chr6:3912271-3912351 4.09e-04 44_[+2(4.73e-05)]_28 chr11:107436845-10743692 6.94e-05 26_[+2(7.97e-05)]_13_[+4(7.87e-05)]_\ 25 chr9:130841350-130841430 4.19e-02 80 chr9:124049441-124049521 5.38e-05 42_[+2(6.20e-05)]_3_[+2(4.73e-05)]_\ 2_[+5(1.00e-05)]_9 chr1:44514093-44514173 5.72e-05 27_[+4(3.93e-05)]_5_[+1(1.78e-05)]_\ 32 chr2:69828423-69828503 2.07e-03 64_[+4(3.93e-05)]_8 chr5:74862857-74862937 2.58e-03 29_[+1(1.78e-05)]_43 chr15:79471562-79471642 1.74e-04 10_[+2(1.48e-05)]_29_[+1(5.03e-05)]_\ 25 chr1:32701787-32701867 2.20e-02 17_[+2(4.73e-05)]_55 chr18:9005621-9005701 3.92e-05 25_[+4(1.78e-05)]_5_[+1(5.03e-05)]_\ 34 chr7:143189245-143189325 4.21e-02 6_[+3(5.33e-05)]_66 chr8:61242937-61243017 2.39e-03 80 chr2:12317265-12317345 2.23e-03 26_[+1(5.03e-05)]_46 chr3:45709704-45709784 1.46e-02 80 chr1:45173726-45173806 9.58e-02 80 chr6:34713325-34713405 5.62e-05 37_[+1(5.03e-05)]_35 chr8:41650007-41650087 2.88e-01 80 chr6:10348170-10348250 5.98e-02 80 chr3:32182560-32182640 1.30e-02 80 chr7:102632252-102632332 1.12e-04 29_[+1(1.78e-05)]_19_[+1(5.03e-05)]_\ 16 chr1:52035539-52035619 1.74e-03 68_[+5(1.00e-05)]_4 chr2:9692869-9692949 3.88e-03 25_[+2(3.26e-05)]_47 chr6:154835189-154835269 3.01e-01 80 chr5:112378700-112378780 3.79e-03 60_[+4(7.87e-05)]_12 chr2:38591466-38591546 3.66e-02 56_[+4(7.87e-05)]_16 chr22:40895277-40895357 1.95e-03 52_[+2(7.97e-05)]_20 chr5:70681176-70681256 1.47e-01 80 chr10:73857646-73857726 1.32e-05 36_[+4(3.93e-05)]_5_[+2(1.48e-05)]_\ 23 chr6:136931567-136931647 2.86e-03 1_[+2(4.73e-05)]_71 chr1:149911186-149911266 2.12e-01 80 chr7:88319301-88319381 5.93e-02 67_[+4(3.93e-05)]_5 chr10:80218905-80218985 1.25e-02 19_[+3(3.55e-05)]_53 chrX:14083170-14083250 5.39e-06 [+3(1.77e-05)]_20_[+1(1.78e-05)]_44 chr1:244486398-244486478 4.13e-03 62_[+1(3.56e-05)]_10 chr1:172903201-172903281 3.06e-04 5_[+2(7.97e-05)]_67 chr1:28827662-28827742 5.73e-04 34_[+2(1.48e-05)]_38 chr1:38999681-38999761 2.57e-01 80 chr3:39680907-39680987 1.47e-04 52_[+2(4.73e-05)]_20 chr15:84115968-84116048 9.46e-01 80 chr9:97041234-97041314 1.94e-05 3_[+2(3.26e-05)]_[+3(1.77e-05)]_31_\ [+1(3.56e-05)]_22 chr7:133768832-133768912 1.18e-04 62_[+2(3.26e-05)]_10 chr20:40325236-40325316 1.51e-03 53_[+2(3.26e-05)]_19 chr20:34411182-34411262 1.14e-03 70_[+2(3.26e-05)]_2 chr7:116105973-116106053 9.05e-05 13_[+1(7.97e-05)]_13_[+2(3.26e-05)]_\ 5_[+3(7.47e-05)]_25 chr6:91078855-91078935 1.70e-03 27_[+1(3.56e-05)]_6_[+2(3.26e-05)]_\ 31 chr19:2161399-2161479 4.15e-03 42_[+2(4.73e-05)]_30 chr8:74284053-74284133 4.39e-03 16_[+5(4.89e-05)]_56 chr12:46613783-46613863 2.28e-02 15_[+3(5.33e-05)]_57 chr16:69564738-69564818 9.11e-04 2_[+2(1.48e-05)]_4_[+2(1.48e-05)]_\ 58 chr2:64479923-64480003 3.69e-04 18_[+2(6.20e-05)]_54 chr18:8913738-8913818 2.07e-01 80 chr22:41107703-41107783 7.32e-06 2_[+1(1.78e-05)]_19_[+4(1.78e-05)]_\ 43 chr10:7070274-7070354 9.46e-04 59_[+2(1.48e-05)]_2_[+1(1.78e-05)]_\ 3 chr11:32408444-32408524 5.19e-05 70_[+1(1.78e-05)]_2 chr3:33984151-33984231 3.63e-05 56_[+1(1.78e-05)]_16 chr6:144126070-144126150 5.26e-02 55_[+4(5.71e-05)]_17 chr1:153031947-153032027 2.21e-02 41_[+3(9.26e-05)]_31 chr7:86740254-86740334 2.88e-04 40_[+2(4.73e-05)]_32 chr6:149440498-149440578 7.30e-04 80 chr8:59754782-59754862 3.54e-03 8_[+1(5.03e-05)]_64 chr2:170526782-170526862 7.47e-04 52_[+1(1.78e-05)]_20 chr10:3137764-3137844 3.72e-03 29_[+1(5.03e-05)]_43 chr1:4067785-4067865 4.83e-01 80 chr16:75658854-75658934 8.97e-04 44_[+1(5.03e-05)]_28 chr12:95910731-95910811 3.39e-02 80 chr1:207484687-207484767 5.77e-03 41_[+2(4.73e-05)]_31 chr3:43812274-43812354 1.05e-04 64_[+1(5.03e-05)]_8 chr2:47478276-47478356 2.97e-03 11_[+2(1.48e-05)]_61 chr4:187766493-187766573 4.43e-01 80 chr11:44355038-44355118 1.65e-04 26_[+1(6.50e-05)]_3_[+3(5.33e-05)]_\ 35 chr20:57199066-57199146 2.00e-05 8_[+2(1.48e-05)]_13_[+2(4.73e-05)]_\ 10_[+5(1.00e-05)]_25 chr16:9141779-9141859 2.47e-03 21_[+1(1.78e-05)]_21_[+1(3.56e-05)]_\ 22 chr6:26026010-26026090 1.53e-04 46_[+2(1.48e-05)]_26 chr1:23441792-23441872 2.43e-02 80 chr3:171242078-171242158 2.37e-03 29_[+2(6.20e-05)]_4_[+2(6.20e-05)]_\ 31 chr5:176421981-176422061 4.27e-01 80 chr9:37953863-37953943 4.10e-01 80 chr5:10703236-10703316 2.50e-03 28_[+2(1.48e-05)]_44 chr17:62919253-62919333 8.07e-01 80 chr11:61568280-61568360 2.05e-04 38_[+2(7.97e-05)]_34 chr5:37672421-37672501 2.56e-02 43_[+4(1.78e-05)]_29 chr11:86235407-86235487 1.13e-01 80 chr3:196758477-196758557 7.80e-05 43_[+3(3.55e-05)]_18_[+2(3.26e-05)]_\ 3 chr2:201270692-201270772 1.50e-01 80 chr11:119465586-11946566 6.30e-06 33_[+2(1.48e-05)]_18_[+4(5.71e-05)]_\ 13 chr1:32773128-32773208 7.76e-03 80 chr6:130173526-130173606 1.43e-03 9_[+3(3.55e-05)]_63 chr1:8933811-8933891 8.24e-04 12_[+2(1.48e-05)]_6_[+2(6.20e-05)]_\ 46 chr11:100840545-10084062 4.60e-04 33_[+1(1.78e-05)]_39 chr19:11205860-11205940 1.43e-03 27_[+1(1.78e-05)]_32_[+1(5.03e-05)]_\ 5 chr6:45262233-45262313 6.58e-02 2_[+4(7.87e-05)]_70 chr7:871475-871555 1.13e-03 42_[+1(1.78e-05)]_30 chr5:132576346-132576426 8.03e-05 1_[+3(3.55e-05)]_8_[+2(3.26e-05)]_\ 11_[+2(3.26e-05)]_36 chr10:88785467-88785547 1.78e-01 34_[+4(5.71e-05)]_38 chr6:20458830-20458910 2.05e-01 80 chr7:116141640-116141720 2.81e-04 46_[+3(5.33e-05)]_26 chr1:39583033-39583113 3.03e-07 40_[+3(5.33e-05)]_11_[+1(1.78e-05)]_\ 13 chr4:174140030-174140110 2.84e-04 21_[+1(1.78e-05)]_51 chr7:29686786-29686866 7.57e-04 12_[+2(4.73e-05)]_60 chr3:47388931-47389011 6.06e-01 80 chr7:2797767-2797847 8.18e-01 80 chr17:53421930-53422010 2.35e-01 80 chr10:76952031-76952111 5.22e-05 9_[+5(3.42e-05)]_26_[+2(1.48e-05)]_\ 29 chr14:54902365-54902445 5.93e-05 20_[+2(3.26e-05)]_41_[+4(5.71e-05)]_\ 3 chr6:134516836-134516916 2.65e-01 80 chr20:5700702-5700782 1.36e-01 80 chr12:45667720-45667800 1.54e-01 19_[+3(3.55e-05)]_53 chr11:36171411-36171491 4.18e-04 11_[+2(3.26e-05)]_8_[+2(3.26e-05)]_\ 45 chr17:39686582-39686662 6.91e-02 7_[+3(5.33e-05)]_65 chr8:21818099-21818179 1.12e-01 34_[+3(3.55e-05)]_38 chr1:224730688-224730768 1.58e-04 41_[+1(7.97e-05)]_31 chr10:75781151-75781231 4.38e-04 39_[+2(7.97e-05)]_33 chr3:183128149-183128229 1.64e-01 80 chr6:42939013-42939093 2.20e-03 32_[+2(7.97e-05)]_8_[+2(1.48e-05)]_\ 24 chr4:80599775-80599855 3.25e-03 66_[+1(3.56e-05)]_6 chr6:31685454-31685534 9.38e-01 80 chr12:112811429-11281150 1.14e-01 80 chr12:71039800-71039880 1.90e-03 18_[+2(1.48e-05)]_54 chrX:119683953-119684033 4.33e-03 13_[+2(1.48e-05)]_59 chr4:8338323-8338403 2.03e-03 42_[+2(3.26e-05)]_5_[+2(1.48e-05)]_\ 17 chr7:150097421-150097501 3.79e-01 80 chr11:96095093-96095173 4.95e-05 69_[+1(7.97e-05)]_3 chr11:10921238-10921318 3.31e-05 10_[+1(1.78e-05)]_62 chr3:139058302-139058382 1.05e-01 43_[+4(7.87e-05)]_29 chr9:125164824-125164904 8.53e-04 14_[+2(1.48e-05)]_33_[+2(1.48e-05)]_\ 17 chr8:38068361-38068441 8.24e-02 80 chr2:202652377-202652457 1.68e-02 80 chr3:16351284-16351364 8.34e-02 13_[+3(1.77e-05)]_59 chr19:21641060-21641140 9.87e-05 54_[+1(5.03e-05)]_18 chr9:125209206-125209286 1.54e-01 38_[+3(7.47e-05)]_34 chr6:87395074-87395154 9.29e-04 10_[+2(3.26e-05)]_62 chr10:66268022-66268102 9.94e-02 31_[+3(7.47e-05)]_16_[+3(7.47e-05)]_\ 17 chr14:31669481-31669561 3.66e-02 80 chr1:67420677-67420757 1.74e-05 36_[+2(4.73e-05)]_4_[+3(1.77e-05)]_\ 24 chr8:145992888-145992968 1.78e-03 28_[+1(1.78e-05)]_32_[+1(1.78e-05)]_\ 4 chr2:9034596-9034676 7.30e-04 70_[+2(3.26e-05)]_2 chr9:108409929-108410009 6.61e-03 43_[+3(1.77e-05)]_29 chr15:35849828-35849908 2.92e-06 20_[+1(1.78e-05)]_34_[+1(3.56e-05)]_\ 1_[+3(9.26e-05)]_1 chr3:42647421-42647501 5.45e-01 80 chr7:32545996-32546076 7.88e-03 80 chr10:17071701-17071781 1.37e-02 [+2(3.26e-05)]_72 chr2:43653698-43653778 3.36e-04 38_[+2(7.97e-05)]_34 chr7:150736627-150736707 3.21e-03 69_[+3(1.77e-05)]_3 chr7:155082902-155082982 2.76e-03 17_[+2(3.26e-05)]_42_[+2(1.48e-05)]_\ 5 chr12:104802456-10480253 4.38e-04 59_[+2(4.73e-05)]_13 chr6:130160765-130160845 6.81e-03 80 chr7:106675983-106676063 2.64e-04 61_[+1(1.78e-05)]_11 chr8:91200048-91200128 2.00e-04 53_[+2(3.26e-05)]_19 chr1:100813069-100813149 9.09e-05 54_[+1(1.78e-05)]_18 chr7:99160629-99160709 5.00e-04 35_[+2(1.48e-05)]_16_[+2(4.73e-05)]_\ 13 chr11:20389170-20389250 9.27e-02 80 chr22:21910408-21910488 3.94e-05 5_[+5(1.00e-05)]_52_[+2(4.73e-05)]_\ 7 chrX:70670709-70670789 2.64e-02 17_[+4(3.93e-05)]_55 chr8:29107601-29107681 5.90e-04 45_[+2(1.48e-05)]_27 chr1:110955888-110955968 7.10e-02 34_[+3(3.55e-05)]_38 chr10:65467205-65467285 2.41e-03 49_[+1(5.03e-05)]_9_[+2(6.20e-05)]_\ 6 chr17:39010612-39010692 2.09e-04 22_[+1(5.03e-05)]_34_[+2(1.48e-05)]_\ 8 chr1:75938264-75938344 1.34e-01 80 chr10:30971450-30971530 1.30e-02 35_[+2(4.73e-05)]_37 chr10:13446401-13446481 1.51e-01 80 chr2:196351915-196351995 1.09e-04 34_[+1(1.78e-05)]_38 chr11:72032860-72032940 2.10e-03 33_[+2(6.20e-05)]_4_[+2(3.26e-05)]_\ 27 chr16:85335967-85336047 2.49e-03 69_[+1(1.78e-05)]_3 chr2:219287343-219287423 3.99e-03 34_[+1(6.50e-05)]_38 chr10:11492604-11492684 4.15e-04 5_[+4(1.78e-05)]_67 chr11:9010278-9010358 4.25e-03 54_[+3(7.47e-05)]_18 chr7:10747333-10747413 9.09e-02 9_[+4(1.78e-05)]_63 chr5:10358119-10358199 5.68e-02 80 chr3:4940391-4940471 9.62e-03 9_[+5(1.00e-05)]_63 chr2:170870546-170870626 2.02e-01 9_[+3(5.33e-05)]_63 chr6:27741772-27741852 4.51e-01 80 chr19:9186428-9186508 1.04e-03 8_[+2(1.48e-05)]_64 chr15:42791653-42791733 8.67e-04 19_[+1(1.78e-05)]_53 chr3:179093048-179093128 8.93e-02 80 chr11:86454623-86454703 2.06e-04 17_[+1(1.78e-05)]_55 chr19:41172431-41172511 4.40e-04 14_[+1(7.97e-05)]_20_[+1(3.56e-05)]_\ 30 chr8:38895795-38895875 7.01e-04 39_[+2(3.26e-05)]_8_[+2(6.20e-05)]_\ 17 chr20:33301314-33301394 5.20e-04 57_[+4(1.78e-05)]_15 chr6:119629570-119629650 1.07e-03 61_[+1(1.78e-05)]_11 chr3:25645822-25645902 1.92e-06 3_[+5(4.89e-05)]_20_[+2(1.48e-05)]_\ 41 chr7:123178335-123178415 2.26e-04 25_[+2(1.48e-05)]_25_[+2(3.26e-05)]_\ 14 chr1:21965184-21965264 9.28e-02 80 chr2:182675691-182675771 2.38e-04 6_[+2(3.26e-05)]_66 chr8:67018085-67018165 2.55e-05 25_[+4(5.71e-05)]_7_[+2(3.26e-05)]_\ 32 chr2:69076946-69077026 8.20e-04 38_[+1(5.03e-05)]_34 chr17:61538273-61538353 2.92e-04 39_[+1(1.78e-05)]_33 chr16:3072424-3072504 4.07e-04 13_[+1(5.03e-05)]_28_[+2(1.48e-05)]_\ 23 chr1:44997939-44998019 6.11e-04 4_[+2(3.26e-05)]_40_[+2(7.97e-05)]_\ 20 chr4:96210544-96210624 6.41e-03 80 chr2:100908723-100908803 2.06e-06 15_[+2(3.26e-05)]_10_[+3(1.77e-05)]_\ 39 chr6:28514920-28515000 7.28e-02 36_[+4(3.93e-05)]_36 chr6:17971873-17971953 9.11e-03 63_[+2(4.73e-05)]_9 chr7:12991278-12991358 2.18e-03 37_[+1(5.03e-05)]_35 chr3:142900964-142901044 2.40e-01 80 chr14:23005995-23006075 9.46e-04 23_[+1(1.78e-05)]_4_[+2(4.73e-05)]_\ 37 chr8:141353545-141353625 4.30e-01 80 chr1:27400853-27400933 6.08e-05 10_[+1(1.78e-05)]_62 chr17:71470661-71470741 2.69e-02 26_[+3(3.55e-05)]_17_[+3(1.77e-05)]_\ 21 chr15:59126086-59126166 7.69e-01 80 chr3:11330910-11330990 7.42e-04 58_[+2(1.48e-05)]_14 chr1:38388547-38388627 2.91e-01 80 chr1:94130001-94130081 1.48e-02 5_[+3(1.77e-05)]_67 chr1:25739894-25739974 7.86e-01 80 chr5:139597284-139597364 4.77e-02 9_[+3(5.33e-05)]_63 chr5:140699890-140699970 8.06e-01 80 chr1:169281661-169281741 8.64e-02 80 chr15:35459100-35459180 2.23e-03 13_[+4(1.78e-05)]_59 chr6:17715435-17715515 8.46e-04 50_[+1(1.78e-05)]_4_[+2(3.26e-05)]_\ 10 chr18:32690719-32690799 8.31e-02 48_[+4(3.93e-05)]_24 chr12:94316404-94316484 2.35e-05 6_[+3(3.55e-05)]_35_[+2(1.48e-05)]_\ 23 chr6:4688433-4688513 3.12e-04 15_[+1(1.78e-05)]_57 chr6:109705788-109705868 4.12e-04 50_[+2(3.26e-05)]_22 chr1:167199173-167199253 1.28e-03 28_[+1(3.56e-05)]_44 chr19:33592240-33592320 2.94e-01 80 chr6:28655574-28655654 2.06e-02 38_[+4(1.78e-05)]_34 chr19:14495154-14495234 5.59e-01 80 chrX:65382285-65382365 6.50e-01 80 chr4:82342791-82342871 3.80e-01 80 chr5:131083066-131083146 7.64e-01 80 chr2:170767044-170767124 2.07e-03 80 chr3:38388149-38388229 8.20e-01 80 chr7:95865646-95865726 8.17e-04 10_[+1(1.78e-05)]_62 chr5:142625746-142625826 1.21e-04 48_[+1(5.03e-05)]_24 chr8:8932700-8932780 2.37e-01 17_[+3(5.33e-05)]_55 chr16:20758411-20758491 4.73e-06 8_[+5(1.00e-05)]_64 chr16:71526060-71526140 8.82e-03 49_[+3(7.47e-05)]_23 chr6:125302796-125302876 3.04e-01 80 chr12:96769880-96769960 7.36e-02 41_[+4(5.71e-05)]_31 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************