******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCA5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:5480539-5480619 1.0000 80 chr19:16762695-16762775 1.0000 80 chr20:47386170-47386250 1.0000 80 chr16:85321086-85321166 1.0000 80 chr1:32246383-32246463 1.0000 80 chr19:5354533-5354613 1.0000 80 chr19:30277298-30277378 1.0000 80 chr19:18914491-18914571 1.0000 80 chr15:68572841-68572921 1.0000 80 chr17:3790804-3790884 1.0000 80 chr1:10952367-10952447 1.0000 80 chr19:43731311-43731391 1.0000 80 chr1:30982664-30982744 1.0000 80 chr17:17580729-17580809 1.0000 80 chr7:99829040-99829120 1.0000 80 chr22:22405699-22405779 1.0000 80 chr16:27379300-27379380 1.0000 80 chr2:242699921-242700001 1.0000 80 chr19:35797442-35797522 1.0000 80 chr20:48910805-48910885 1.0000 80 chr14:78389648-78389728 1.0000 80 chr19:4590691-4590771 1.0000 80 chr9:272569-272649 1.0000 80 chr19:14310983-14311063 1.0000 80 chr19:45074028-45074108 1.0000 80 chr6:2987994-2988074 1.0000 80 chr20:36025652-36025732 1.0000 80 chr1:44016523-44016603 1.0000 80 chr19:49933648-49933728 1.0000 80 chr9:140795072-140795152 1.0000 80 chr10:81176431-81176511 1.0000 80 chr22:20250377-20250457 1.0000 80 chr7:75849609-75849689 1.0000 80 chr22:28082127-28082207 1.0000 80 chr12:110253152-11025323 1.0000 80 chr19:3545390-3545470 1.0000 80 chr19:2281716-2281796 1.0000 80 chr22:39835377-39835457 1.0000 80 chr6:43756260-43756340 1.0000 80 chr19:51662046-51662126 1.0000 80 chr19:4139640-4139720 1.0000 80 chr9:130976551-130976631 1.0000 80 chr10:72666255-72666335 1.0000 80 chr8:37750352-37750432 1.0000 80 chr20:34204751-34204831 1.0000 80 chr22:28065132-28065212 1.0000 80 chr1:17042633-17042713 1.0000 80 chr8:915436-915516 1.0000 80 chr9:37591514-37591594 1.0000 80 chr19:10415856-10415936 1.0000 80 chr1:23916710-23916790 1.0000 80 chr17:17656015-17656095 1.0000 80 chr1:21969393-21969473 1.0000 80 chr16:81516839-81516919 1.0000 80 chr1:47341947-47342027 1.0000 80 chr17:46092120-46092200 1.0000 80 chr2:9900381-9900461 1.0000 80 chr19:16831226-16831306 1.0000 80 chr19:3250776-3250856 1.0000 80 chr10:74026442-74026522 1.0000 80 chr9:130925517-130925597 1.0000 80 chr12:31000320-31000400 1.0000 80 chr1:31231115-31231195 1.0000 80 chr5:173098630-173098710 1.0000 80 chr19:3234982-3235062 1.0000 80 chr1:228267387-228267467 1.0000 80 chr20:31157016-31157096 1.0000 80 chr19:13389112-13389192 1.0000 80 chr21:45357349-45357429 1.0000 80 chr2:24703275-24703355 1.0000 80 chr19:5170481-5170561 1.0000 80 chr17:39677867-39677947 1.0000 80 chr22:17036509-17036589 1.0000 80 chr19:48926830-48926910 1.0000 80 chr12:122281312-12228139 1.0000 80 chr8:37757658-37757738 1.0000 80 chr8:142067690-142067770 1.0000 80 chr7:73996965-73997045 1.0000 80 chr19:513614-513694 1.0000 80 chr16:85499152-85499232 1.0000 80 chr6:34485354-34485434 1.0000 80 chr9:139650531-139650611 1.0000 80 chrX:223113-223193 1.0000 80 chr1:205647169-205647249 1.0000 80 chr16:87350493-87350573 1.0000 80 chr16:8869461-8869541 1.0000 80 chr19:5310034-5310114 1.0000 80 chr6:34294458-34294538 1.0000 80 chr19:10526481-10526561 1.0000 80 chr1:31228364-31228444 1.0000 80 chr11:3465749-3465829 1.0000 80 chr1:55487675-55487755 1.0000 80 chr19:10879841-10879921 1.0000 80 chr1:19578838-19578918 1.0000 80 chr19:4552036-4552116 1.0000 80 chr21:15347083-15347163 1.0000 80 chr7:4659487-4659567 1.0000 80 chr17:29046441-29046521 1.0000 80 chr2:208905731-208905811 1.0000 80 chr6:34537252-34537332 1.0000 80 chr3:13290308-13290388 1.0000 80 chr19:17639588-17639668 1.0000 80 chr16:25782764-25782844 1.0000 80 chr20:49051653-49051733 1.0000 80 chr1:23918780-23918860 1.0000 80 chr1:24435704-24435784 1.0000 80 chr1:15365047-15365127 1.0000 80 chr19:3324681-3324761 1.0000 80 chr19:3052248-3052328 1.0000 80 chr9:131523137-131523217 1.0000 80 chr19:1247905-1247985 1.0000 80 chr11:36313935-36314015 1.0000 80 chr22:30662482-30662562 1.0000 80 chr19:2648748-2648828 1.0000 80 chr1:36945264-36945344 1.0000 80 chr19:17229914-17229994 1.0000 80 chr19:45320596-45320676 1.0000 80 chr2:219152989-219153069 1.0000 80 chr6:36750684-36750764 1.0000 80 chr6:6881094-6881174 1.0000 80 chr19:45197553-45197633 1.0000 80 chr22:35779450-35779530 1.0000 80 chr12:125106934-12510701 1.0000 80 chr11:58939297-58939377 1.0000 80 chr15:101688500-10168858 1.0000 80 chr1:25417506-25417586 1.0000 80 chr19:4731039-4731119 1.0000 80 chr19:2168729-2168809 1.0000 80 chr9:132366801-132366881 1.0000 80 chr19:48845150-48845230 1.0000 80 chr15:67134313-67134393 1.0000 80 chr16:11707484-11707564 1.0000 80 chr7:73923998-73924078 1.0000 80 chr11:117973136-11797321 1.0000 80 chr11:75524856-75524936 1.0000 80 chr19:6772145-6772225 1.0000 80 chr15:77926820-77926900 1.0000 80 chr17:48347531-48347611 1.0000 80 chr17:62733052-62733132 1.0000 80 chr19:3146863-3146943 1.0000 80 chr5:79552901-79552981 1.0000 80 chr19:19170704-19170784 1.0000 80 chr10:15482303-15482383 1.0000 80 chr11:66246365-66246445 1.0000 80 chr9:127085459-127085539 1.0000 80 chr22:23407828-23407908 1.0000 80 chr7:73735040-73735120 1.0000 80 chr11:44555927-44556007 1.0000 80 chr9:38040504-38040584 1.0000 80 chr7:5421069-5421149 1.0000 80 chr3:24614041-24614121 1.0000 80 chr6:34496203-34496283 1.0000 80 chr19:3321015-3321095 1.0000 80 chr16:88588095-88588175 1.0000 80 chr11:72999786-72999866 1.0000 80 chr19:10686147-10686227 1.0000 80 chr19:39826878-39826958 1.0000 80 chr8:103743481-103743561 1.0000 80 chr17:79474928-79475008 1.0000 80 chr11:696506-696586 1.0000 80 chr19:13323887-13323967 1.0000 80 chr6:36035893-36035973 1.0000 80 chr2:24234752-24234832 1.0000 80 chr20:48804922-48805002 1.0000 80 chr1:206712375-206712455 1.0000 80 chr11:64102299-64102379 1.0000 80 chr16:29614031-29614111 1.0000 80 chr1:25068717-25068797 1.0000 80 chr1:67658696-67658776 1.0000 80 chr20:48914471-48914551 1.0000 80 chr19:55166449-55166529 1.0000 80 chr11:74412642-74412722 1.0000 80 chr5:157001977-157002057 1.0000 80 chr6:37014250-37014330 1.0000 80 chr12:121063400-12106348 1.0000 80 chr4:2805360-2805440 1.0000 80 chr19:1280189-1280269 1.0000 80 chr20:817460-817540 1.0000 80 chr19:3732237-3732317 1.0000 80 chr19:19282729-19282809 1.0000 80 chr15:68520969-68521049 1.0000 80 chr2:27580246-27580326 1.0000 80 chr11:68120177-68120257 1.0000 80 chr2:10611286-10611366 1.0000 80 chr2:172386553-172386633 1.0000 80 chr1:31359729-31359809 1.0000 80 chr16:84986092-84986172 1.0000 80 chr19:3210724-3210804 1.0000 80 chr7:148660716-148660796 1.0000 80 chr11:75434294-75434374 1.0000 80 chr17:27539361-27539441 1.0000 80 chr19:4220434-4220514 1.0000 80 chr9:130978567-130978647 1.0000 80 chr11:75484903-75484983 1.0000 80 chr11:94681281-94681361 1.0000 80 chr20:48961201-48961281 1.0000 80 chr8:41651817-41651897 1.0000 80 chr16:56903420-56903500 1.0000 80 chr2:10260138-10260218 1.0000 80 chr19:4161590-4161670 1.0000 80 chr6:41643829-41643909 1.0000 80 chr20:60808915-60808995 1.0000 80 chr3:45112682-45112762 1.0000 80 chr3:184484637-184484717 1.0000 80 chr19:50373568-50373648 1.0000 80 chr6:717286-717366 1.0000 80 chr19:18393683-18393763 1.0000 80 chr19:39218797-39218877 1.0000 80 chr6:28777268-28777348 1.0000 80 chr9:140795272-140795352 1.0000 80 chr3:128586490-128586570 1.0000 80 chr6:692450-692530 1.0000 80 chr1:36939807-36939887 1.0000 80 chr19:44173525-44173605 1.0000 80 chr22:26880269-26880349 1.0000 80 chr8:103540862-103540942 1.0000 80 chr19:3059835-3059915 1.0000 80 chr11:69212585-69212665 1.0000 80 chr7:44690041-44690121 1.0000 80 chr6:37605498-37605578 1.0000 80 chr16:4992237-4992317 1.0000 80 chr9:136029911-136029991 1.0000 80 chr15:27379758-27379838 1.0000 80 chr6:158430025-158430105 1.0000 80 chr20:48842825-48842905 1.0000 80 chr11:70079306-70079386 1.0000 80 chr1:12249307-12249387 1.0000 80 chr11:67594550-67594630 1.0000 80 chr19:8315591-8315671 1.0000 80 chr19:3484983-3485063 1.0000 80 chr10:22658496-22658576 1.0000 80 chr1:16474188-16474268 1.0000 80 chr16:88332823-88332903 1.0000 80 chr6:34093835-34093915 1.0000 80 chr12:113767712-11376779 1.0000 80 chr12:114101273-11410135 1.0000 80 chr1:15323453-15323533 1.0000 80 chr3:5044687-5044767 1.0000 80 chr19:8213298-8213378 1.0000 80 chr19:18156260-18156340 1.0000 80 chr1:10969893-10969973 1.0000 80 chr1:32215694-32215774 1.0000 80 chr1:27834957-27835037 1.0000 80 chr1:117236445-117236525 1.0000 80 chr19:50047566-50047646 1.0000 80 chr10:80883966-80884046 1.0000 80 chr19:16251891-16251971 1.0000 80 chr1:53603603-53603683 1.0000 80 chr5:148809550-148809630 1.0000 80 chr1:26186884-26186964 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SMARCA5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCA5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.232 C 0.265 G 0.259 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.232 C 0.265 G 0.259 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCTTTGCA MEME-1 width = 8 sites = 29 llr = 281 E-value = 1.9e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTTTGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::a pos.-specific C aa:1::9: probability G ::::1a:: matrix T ::999::: bits 2.1 * 1.9 * * * 1.7 *** ** * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTTGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:113767712-11376779 67 1.62e-05 tgccccaggg cctttgca tctact chr6:158430025-158430105 32 1.62e-05 tgccgcagga cctttgca cgtgcccttc chr19:18393683-18393763 43 1.62e-05 tacctctggg cctttgca cgtgctatgc chr8:41651817-41651897 49 1.62e-05 tgcctcagga cctttgca tgtgctgttt chr11:75434294-75434374 57 1.62e-05 CACCGCAGGC CCTTTGCA GCACCATCTG chr19:19170704-19170784 22 1.62e-05 caccccaggg cctttgca caagccccca chr12:125106934-12510701 48 1.62e-05 TGCCTCAGGG CCTTTGCA CCTGCACCTG chr19:17229914-17229994 62 1.62e-05 cgccccaggg cctttgca tgtgctgtgc chr16:25782764-25782844 18 1.62e-05 taccccaggg cctttgca cagactctcc chr2:208905731-208905811 27 1.62e-05 tgccacaggg cctttgca tatcattctg chr19:4552036-4552116 63 1.62e-05 agcctcagga cctttgca catgctgttt chr6:34485354-34485434 14 1.62e-05 tgccccaggg cctttgca tgggctgttc chr22:17036509-17036589 58 1.62e-05 aaaatcatgc cctttgca gcaacatgga chr19:13389112-13389192 69 1.62e-05 cacctcaggg cctttgca cagg chr17:17656015-17656095 29 1.62e-05 CACCACAGGG CCTTTGCA CGTCATTCCT chr8:37750352-37750432 26 1.62e-05 tgcctcaggg cctttgca caggctgcta chr6:43756260-43756340 42 1.62e-05 tgccacaggg cctttgca ctggctgtcc chr20:47386170-47386250 16 1.62e-05 tgccacagga cctttgca ctggctgtcc chr19:16762695-16762775 10 1.62e-05 GCCCCAGGA CCTTTGCA AAGACGAGAA chr19:16251891-16251971 49 3.17e-05 gctattatgc ccattgca cagatgcaga chr12:121063400-12106348 18 3.17e-05 cgacatcgcg ccattgca ctccagcctg chr21:45357349-45357429 30 4.93e-05 ATCGTGGCTG CCTCTGCA CCAGCCATCA chr17:46092120-46092200 5 4.93e-05 GTTC CCTCTGCA CACGAATCTT chr9:132366801-132366881 70 6.66e-05 ttGGCTCCCT CCTTGGCA GCC chr1:25417506-25417586 52 6.66e-05 cgctgtgtga ccttggca agtggcttca chr8:103743481-103743561 62 1.11e-04 ggcctcaggg tctttgca tttgctgttc chr10:15482303-15482383 53 1.11e-04 gaagaggtga cctttgaa cagaggctct chr16:85321086-85321166 67 1.11e-04 tgcctcaggg cctttgta cccgct chr11:69212585-69212665 41 1.28e-04 tcacagactg cctgtgca aaggccctgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:113767712-11376779 1.6e-05 66_[+1]_6 chr6:158430025-158430105 1.6e-05 31_[+1]_41 chr19:18393683-18393763 1.6e-05 42_[+1]_30 chr8:41651817-41651897 1.6e-05 48_[+1]_24 chr11:75434294-75434374 1.6e-05 56_[+1]_16 chr19:19170704-19170784 1.6e-05 21_[+1]_51 chr12:125106934-12510701 1.6e-05 47_[+1]_25 chr19:17229914-17229994 1.6e-05 61_[+1]_11 chr16:25782764-25782844 1.6e-05 17_[+1]_55 chr2:208905731-208905811 1.6e-05 26_[+1]_46 chr19:4552036-4552116 1.6e-05 62_[+1]_10 chr6:34485354-34485434 1.6e-05 13_[+1]_59 chr22:17036509-17036589 1.6e-05 57_[+1]_15 chr19:13389112-13389192 1.6e-05 68_[+1]_4 chr17:17656015-17656095 1.6e-05 28_[+1]_44 chr8:37750352-37750432 1.6e-05 25_[+1]_47 chr6:43756260-43756340 1.6e-05 41_[+1]_31 chr20:47386170-47386250 1.6e-05 15_[+1]_57 chr19:16762695-16762775 1.6e-05 9_[+1]_63 chr19:16251891-16251971 3.2e-05 48_[+1]_24 chr12:121063400-12106348 3.2e-05 17_[+1]_55 chr21:45357349-45357429 4.9e-05 29_[+1]_43 chr17:46092120-46092200 4.9e-05 4_[+1]_68 chr9:132366801-132366881 6.7e-05 69_[+1]_3 chr1:25417506-25417586 6.7e-05 51_[+1]_21 chr8:103743481-103743561 0.00011 61_[+1]_11 chr10:15482303-15482383 0.00011 52_[+1]_20 chr16:85321086-85321166 0.00011 66_[+1]_6 chr11:69212585-69212665 0.00013 40_[+1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTTTGCA width=8 seqs=29 chr12:113767712-11376779 ( 67) CCTTTGCA 1 chr6:158430025-158430105 ( 32) CCTTTGCA 1 chr19:18393683-18393763 ( 43) CCTTTGCA 1 chr8:41651817-41651897 ( 49) CCTTTGCA 1 chr11:75434294-75434374 ( 57) CCTTTGCA 1 chr19:19170704-19170784 ( 22) CCTTTGCA 1 chr12:125106934-12510701 ( 48) CCTTTGCA 1 chr19:17229914-17229994 ( 62) CCTTTGCA 1 chr16:25782764-25782844 ( 18) CCTTTGCA 1 chr2:208905731-208905811 ( 27) CCTTTGCA 1 chr19:4552036-4552116 ( 63) CCTTTGCA 1 chr6:34485354-34485434 ( 14) CCTTTGCA 1 chr22:17036509-17036589 ( 58) CCTTTGCA 1 chr19:13389112-13389192 ( 69) CCTTTGCA 1 chr17:17656015-17656095 ( 29) CCTTTGCA 1 chr8:37750352-37750432 ( 26) CCTTTGCA 1 chr6:43756260-43756340 ( 42) CCTTTGCA 1 chr20:47386170-47386250 ( 16) CCTTTGCA 1 chr19:16762695-16762775 ( 10) CCTTTGCA 1 chr19:16251891-16251971 ( 49) CCATTGCA 1 chr12:121063400-12106348 ( 18) CCATTGCA 1 chr21:45357349-45357429 ( 30) CCTCTGCA 1 chr17:46092120-46092200 ( 5) CCTCTGCA 1 chr9:132366801-132366881 ( 70) CCTTGGCA 1 chr1:25417506-25417586 ( 52) CCTTGGCA 1 chr8:103743481-103743561 ( 62) TCTTTGCA 1 chr10:15482303-15482383 ( 53) CCTTTGAA 1 chr16:85321086-85321166 ( 67) CCTTTGTA 1 chr11:69212585-69212665 ( 41) CCTGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 1.9e-015 -1150 186 -1150 -282 -1150 192 -1150 -1150 -175 -1150 -1150 193 -1150 -194 -290 188 -1150 -1150 -191 193 -1150 -1150 195 -1150 -275 181 -1150 -282 211 -1150 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.9e-015 0.000000 0.965517 0.000000 0.034483 0.000000 1.000000 0.000000 0.000000 0.068966 0.000000 0.000000 0.931034 0.000000 0.068966 0.034483 0.896552 0.000000 0.000000 0.068966 0.931034 0.000000 0.000000 1.000000 0.000000 0.034483 0.931034 0.000000 0.034483 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTGCA MEME-1 regular expression -------------------------------------------------------------------------------- CCTTTGCA -------------------------------------------------------------------------------- Time 4.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGRGAGG MEME-2 width = 8 sites = 66 llr = 520 E-value = 8.0e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGRGAGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:4:a21 pos.-specific C 7:::3::: probability G 3:a67:79 matrix T ::::::1: bits 2.1 * * 1.9 ** * 1.7 ** * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 **** * * (11.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGGGAGG consensus G AC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRGAGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:6772145-6772225 48 1.66e-05 gtggggaggg cagggagg gaactgggca chr2:9900381-9900461 13 1.66e-05 ctggttatat cagggagg gcttcttgga chr1:23916710-23916790 18 1.66e-05 attaggcaac cagggagg acttcctgaa chr17:3790804-3790884 6 1.66e-05 AGTAT CAGGGAGG CCTCCCTGGA chr19:5480539-5480619 64 1.66e-05 gaggagaggg cagggagg ggctggggc chr1:16474188-16474268 52 3.15e-05 aacccaggca cagagagg tcaaggaaat chr19:4161590-4161670 53 3.15e-05 ggtcaaggcc cagagagg ttaagccatg chr1:31359729-31359809 12 3.15e-05 aactaaaatt cagagagg tgaagcaact chr1:25068717-25068797 18 3.15e-05 aagaatgttc cagagagg gggaagagca chr16:29614031-29614111 31 3.15e-05 aaacatagtt cagagagg ttgtcccact chr20:48804922-48805002 68 3.15e-05 TGCTTTggtt cagagagg ggagc chr11:72999786-72999866 26 3.15e-05 tacccaggct cagagagg gtaggtggct chr15:77926820-77926900 46 3.15e-05 agcccaggcc cagagagg ttccaggctc chr3:13290308-13290388 18 3.15e-05 cagagctgca cagagagg ctaagtcacc chr6:34537252-34537332 62 3.15e-05 ctttgaggca cagagagg ttaaggaggt chr12:122281312-12228139 40 3.15e-05 gtcacctcct cagagagg ccctccctga chr22:28065132-28065212 19 3.15e-05 cagcaagtgc cagagagg gcttggatcc chr9:130976551-130976631 55 3.15e-05 aactgaggct cagagagg tatggtcatt chr19:49933648-49933728 35 3.15e-05 TGAGGCAGGA CAGAGAGG AGCAGGGTTC chr1:228267387-228267467 54 4.78e-05 TGTTCCCCAa gagggagg gcagggctgg chr19:18914491-18914571 44 4.78e-05 ggagcagagt gagggagg aggggggaga chr9:136029911-136029991 54 6.48e-05 gcccatttta caggcagg aacattgagg chr3:45112682-45112762 64 6.48e-05 acacacattc caggcagg aagaagaga chr9:38040504-38040584 73 6.48e-05 ggcaggcaga caggcagg chr19:4590691-4590771 46 6.48e-05 gaagggaggg caggcagg taagggggcT chr1:206712375-206712455 25 7.97e-05 tgggagaaat cagggaag gcttcccaga chr6:34496203-34496283 36 7.97e-05 gcagagcagt cagggaag gcttcctgga chr7:73735040-73735120 2 7.97e-05 T CAGGGAAG ACTTCCTGGA chr10:15482303-15482383 27 7.97e-05 gacaagcagt cagggaag gcttctagga chr22:28082127-28082207 19 7.97e-05 caggtgtggt cagggaag acttcctgga chr7:75849609-75849689 20 7.97e-05 tccaggcagt cagggaag gcttcacgga chr19:45074028-45074108 25 7.97e-05 gagggaaaag cagggaag ccagtgtggt chr1:32246383-32246463 24 7.97e-05 tgctggcagt cagggaag gcttcccatt chr1:117236445-117236525 4 9.42e-05 caa gagagagg actccaagca chr17:48347531-48347611 25 9.42e-05 ccttcctgtt gagagagg cccagagaag chr1:31231115-31231195 31 9.42e-05 tcaatccttt gagagagg tactattatg chr19:10686147-10686227 36 1.09e-04 gcccatttca cagacagg caaactgagc chr7:148660716-148660796 49 1.39e-04 cttttttgta gaggcagg gtctcactat chr2:172386553-172386633 10 1.39e-04 aaagacaca cagagaag aaggctatgt chr11:44555927-44556007 35 1.39e-04 caaaggccct gaggcagg actgccagca chr9:127085459-127085539 42 1.39e-04 ctgtgggagt cagagaag gcttcctgga chr9:131523137-131523217 68 1.39e-04 ttgggaggcc gaggcagg cgaat chr19:4139640-4139720 8 1.39e-04 aggccct gaggcagg agcacgcttg chr6:2987994-2988074 20 1.39e-04 tcaggaggct gaggcagg agaatcactt chr17:29046441-29046521 30 1.54e-04 ctgagcagag gagggaag cagctgactt chr5:173098630-173098710 60 1.54e-04 gcagaaatct gagggaag agcatcccac chr11:75484903-75484983 59 1.69e-04 atcagcaaga caggcaag aacattcagg chr22:20250377-20250457 66 1.69e-04 GCCGGGGATC CAGGCAAG CAAGGGA chr17:39677867-39677947 32 1.84e-04 agggaaatgc cagggaga gggggtgtgt chr1:19578838-19578918 12 1.99e-04 GGATCCCTCt gagacagg gtctcgctct chr9:272569-272649 1 1.99e-04 . gagacagg ggtctcgcta chr19:16762695-16762775 29 2.12e-04 AGACGAGAAT GAGAGAAG CATAGAAGCA chr12:114101273-11410135 45 2.55e-04 gacacctcct cagggatg cccaccctga chr19:2648748-2648828 4 2.55e-04 CAG CAGGGATG AGTGATGAAA chr22:30662482-30662562 61 2.55e-04 GGAAGCCTTC CAGGGATG CCCCTTCTCT chr1:24435704-24435784 7 2.55e-04 aattag cagagaga ctctgagtcc chr11:94681281-94681361 13 2.84e-04 aactgagggt gagggaga taaaatggct chr2:24234752-24234832 42 2.99e-04 agtcaccttc caggcaga ggaatgggaa chr6:36035893-36035973 63 2.99e-04 aagagcattc caggcaga agaggaagtc chr1:26186884-26186964 38 4.13e-04 gctgggatta caggcatg agccaccgcg chr6:28777268-28777348 63 4.53e-04 agcactttgg gaggcaga ggcgggtgga chr6:41643829-41643909 32 4.53e-04 agcatccctt gaggcaga tgcactctta chr2:219152989-219153069 64 4.53e-04 tcgggaggct gaggcaga agaatggca chr19:48926830-48926910 48 4.94e-04 caaagggcct gaggaagg tgcagtgttg chr19:5170481-5170561 53 4.94e-04 ctgtgaccct gaggaagg tgggagccat chr10:74026442-74026522 31 6.06e-04 GCCACTGGTT CACGGAGG GATTACGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRGAGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:6772145-6772225 1.7e-05 47_[+2]_25 chr2:9900381-9900461 1.7e-05 12_[+2]_60 chr1:23916710-23916790 1.7e-05 17_[+2]_55 chr17:3790804-3790884 1.7e-05 5_[+2]_67 chr19:5480539-5480619 1.7e-05 63_[+2]_9 chr1:16474188-16474268 3.2e-05 51_[+2]_21 chr19:4161590-4161670 3.2e-05 52_[+2]_20 chr1:31359729-31359809 3.2e-05 11_[+2]_61 chr1:25068717-25068797 3.2e-05 17_[+2]_55 chr16:29614031-29614111 3.2e-05 30_[+2]_42 chr20:48804922-48805002 3.2e-05 67_[+2]_5 chr11:72999786-72999866 3.2e-05 25_[+2]_47 chr15:77926820-77926900 3.2e-05 45_[+2]_27 chr3:13290308-13290388 3.2e-05 17_[+2]_55 chr6:34537252-34537332 3.2e-05 61_[+2]_11 chr12:122281312-12228139 3.2e-05 39_[+2]_33 chr22:28065132-28065212 3.2e-05 18_[+2]_54 chr9:130976551-130976631 3.2e-05 54_[+2]_18 chr19:49933648-49933728 3.2e-05 34_[+2]_38 chr1:228267387-228267467 4.8e-05 53_[+2]_19 chr19:18914491-18914571 4.8e-05 43_[+2]_29 chr9:136029911-136029991 6.5e-05 53_[+2]_19 chr3:45112682-45112762 6.5e-05 63_[+2]_9 chr9:38040504-38040584 6.5e-05 72_[+2] chr19:4590691-4590771 6.5e-05 45_[+2]_27 chr1:206712375-206712455 8e-05 24_[+2]_48 chr6:34496203-34496283 8e-05 35_[+2]_37 chr7:73735040-73735120 8e-05 1_[+2]_71 chr10:15482303-15482383 8e-05 26_[+2]_46 chr22:28082127-28082207 8e-05 18_[+2]_54 chr7:75849609-75849689 8e-05 19_[+2]_53 chr19:45074028-45074108 8e-05 24_[+2]_48 chr1:32246383-32246463 8e-05 23_[+2]_49 chr1:117236445-117236525 9.4e-05 3_[+2]_69 chr17:48347531-48347611 9.4e-05 24_[+2]_48 chr1:31231115-31231195 9.4e-05 30_[+2]_42 chr19:10686147-10686227 0.00011 35_[+2]_37 chr7:148660716-148660796 0.00014 48_[+2]_24 chr2:172386553-172386633 0.00014 9_[+2]_63 chr11:44555927-44556007 0.00014 34_[+2]_38 chr9:127085459-127085539 0.00014 41_[+2]_31 chr9:131523137-131523217 0.00014 67_[+2]_5 chr19:4139640-4139720 0.00014 7_[+2]_65 chr6:2987994-2988074 0.00014 19_[+2]_53 chr17:29046441-29046521 0.00015 29_[+2]_43 chr5:173098630-173098710 0.00015 59_[+2]_13 chr11:75484903-75484983 0.00017 58_[+2]_14 chr22:20250377-20250457 0.00017 65_[+2]_7 chr17:39677867-39677947 0.00018 31_[+2]_41 chr1:19578838-19578918 0.0002 11_[+2]_61 chr9:272569-272649 0.0002 [+2]_72 chr19:16762695-16762775 0.00021 28_[+2]_44 chr12:114101273-11410135 0.00025 44_[+2]_28 chr19:2648748-2648828 0.00025 3_[+2]_69 chr22:30662482-30662562 0.00025 60_[+2]_12 chr1:24435704-24435784 0.00025 6_[+2]_66 chr11:94681281-94681361 0.00028 12_[+2]_60 chr2:24234752-24234832 0.0003 41_[+2]_31 chr6:36035893-36035973 0.0003 62_[+2]_10 chr1:26186884-26186964 0.00041 37_[+2]_35 chr6:28777268-28777348 0.00045 62_[+2]_10 chr6:41643829-41643909 0.00045 31_[+2]_41 chr2:219152989-219153069 0.00045 63_[+2]_9 chr19:48926830-48926910 0.00049 47_[+2]_25 chr19:5170481-5170561 0.00049 52_[+2]_20 chr10:74026442-74026522 0.00061 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRGAGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGRGAGG width=8 seqs=66 chr19:6772145-6772225 ( 48) CAGGGAGG 1 chr2:9900381-9900461 ( 13) CAGGGAGG 1 chr1:23916710-23916790 ( 18) CAGGGAGG 1 chr17:3790804-3790884 ( 6) CAGGGAGG 1 chr19:5480539-5480619 ( 64) CAGGGAGG 1 chr1:16474188-16474268 ( 52) CAGAGAGG 1 chr19:4161590-4161670 ( 53) CAGAGAGG 1 chr1:31359729-31359809 ( 12) CAGAGAGG 1 chr1:25068717-25068797 ( 18) CAGAGAGG 1 chr16:29614031-29614111 ( 31) CAGAGAGG 1 chr20:48804922-48805002 ( 68) CAGAGAGG 1 chr11:72999786-72999866 ( 26) CAGAGAGG 1 chr15:77926820-77926900 ( 46) CAGAGAGG 1 chr3:13290308-13290388 ( 18) CAGAGAGG 1 chr6:34537252-34537332 ( 62) CAGAGAGG 1 chr12:122281312-12228139 ( 40) CAGAGAGG 1 chr22:28065132-28065212 ( 19) CAGAGAGG 1 chr9:130976551-130976631 ( 55) CAGAGAGG 1 chr19:49933648-49933728 ( 35) CAGAGAGG 1 chr1:228267387-228267467 ( 54) GAGGGAGG 1 chr19:18914491-18914571 ( 44) GAGGGAGG 1 chr9:136029911-136029991 ( 54) CAGGCAGG 1 chr3:45112682-45112762 ( 64) CAGGCAGG 1 chr9:38040504-38040584 ( 73) CAGGCAGG 1 chr19:4590691-4590771 ( 46) CAGGCAGG 1 chr1:206712375-206712455 ( 25) CAGGGAAG 1 chr6:34496203-34496283 ( 36) CAGGGAAG 1 chr7:73735040-73735120 ( 2) CAGGGAAG 1 chr10:15482303-15482383 ( 27) CAGGGAAG 1 chr22:28082127-28082207 ( 19) CAGGGAAG 1 chr7:75849609-75849689 ( 20) CAGGGAAG 1 chr19:45074028-45074108 ( 25) CAGGGAAG 1 chr1:32246383-32246463 ( 24) CAGGGAAG 1 chr1:117236445-117236525 ( 4) GAGAGAGG 1 chr17:48347531-48347611 ( 25) GAGAGAGG 1 chr1:31231115-31231195 ( 31) GAGAGAGG 1 chr19:10686147-10686227 ( 36) CAGACAGG 1 chr7:148660716-148660796 ( 49) GAGGCAGG 1 chr2:172386553-172386633 ( 10) CAGAGAAG 1 chr11:44555927-44556007 ( 35) GAGGCAGG 1 chr9:127085459-127085539 ( 42) CAGAGAAG 1 chr9:131523137-131523217 ( 68) GAGGCAGG 1 chr19:4139640-4139720 ( 8) GAGGCAGG 1 chr6:2987994-2988074 ( 20) GAGGCAGG 1 chr17:29046441-29046521 ( 30) GAGGGAAG 1 chr5:173098630-173098710 ( 60) GAGGGAAG 1 chr11:75484903-75484983 ( 59) CAGGCAAG 1 chr22:20250377-20250457 ( 66) CAGGCAAG 1 chr17:39677867-39677947 ( 32) CAGGGAGA 1 chr1:19578838-19578918 ( 12) GAGACAGG 1 chr9:272569-272649 ( 1) GAGACAGG 1 chr19:16762695-16762775 ( 29) GAGAGAAG 1 chr12:114101273-11410135 ( 45) CAGGGATG 1 chr19:2648748-2648828 ( 4) CAGGGATG 1 chr22:30662482-30662562 ( 61) CAGGGATG 1 chr1:24435704-24435784 ( 7) CAGAGAGA 1 chr11:94681281-94681361 ( 13) GAGGGAGA 1 chr2:24234752-24234832 ( 42) CAGGCAGA 1 chr6:36035893-36035973 ( 63) CAGGCAGA 1 chr1:26186884-26186964 ( 38) CAGGCATG 1 chr6:28777268-28777348 ( 63) GAGGCAGA 1 chr6:41643829-41643909 ( 32) GAGGCAGA 1 chr2:219152989-219153069 ( 64) GAGGCAGA 1 chr19:48926830-48926910 ( 48) GAGGAAGG 1 chr19:5170481-5170561 ( 53) GAGGAAGG 1 chr10:74026442-74026522 ( 31) CACGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRGAGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.87455 E= 8.0e-022 -1269 136 30 -1269 211 -1269 -1269 -1269 -1269 -412 193 -1269 65 -1269 130 -1269 -294 19 136 -1269 211 -1269 -1269 -1269 -3 -1269 146 -201 -94 -1269 176 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRGAGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 8.0e-022 0.000000 0.681818 0.318182 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.015152 0.984848 0.000000 0.363636 0.000000 0.636364 0.000000 0.030303 0.303030 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.227273 0.000000 0.712121 0.060606 0.121212 0.000000 0.878788 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGRGAGG MEME-2 regular expression -------------------------------------------------------------------------------- [CG]AG[GA][GC]A[GA]G -------------------------------------------------------------------------------- Time 8.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTSYCTG MEME-3 width = 8 sites = 68 llr = 500 E-value = 6.3e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTSYCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C 99:55a:3 probability G 1::3:::8 matrix T :1915:a: bits 2.1 * 1.9 ** 1.7 ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 *** **** (10.6 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCTG consensus GT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTSYCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:80883966-80884046 2 3.87e-05 c cctctctg agcagctgtt chr3:5044687-5044767 60 3.87e-05 aggtacctaa cctctctg agcctccatg chr16:4992237-4992317 28 3.87e-05 aatcattttg cctctctg agcctcagtt chr19:44173525-44173605 45 3.87e-05 agttatctaa cctctctg tgccctagtt chr9:130978567-130978647 69 3.87e-05 agtcacttca cctctctg agcc chr11:74412642-74412722 25 3.87e-05 aggtacttca cctctctg agcctcagtt chr7:5421069-5421149 36 3.87e-05 tccaggaagc cctccctg accacctctg chr9:132366801-132366881 15 3.87e-05 agtggctgca cctctctg agcctcatgt chr1:25417506-25417586 70 3.87e-05 agtggcttca cctctctg agc chr15:101688500-10168858 52 3.87e-05 ggtttcttga cctctctg tgcttcagtt chr6:36750684-36750764 49 3.87e-05 ggtaacttaa cctctctg aggctgggta chr19:17229914-17229994 24 3.87e-05 agtcacttga cctctctg ttctgcctcc chr19:3052248-3052328 40 3.87e-05 TTCAGCTCAC CCTCTCTG GGCTAGGCAT chr20:49051653-49051733 48 3.87e-05 tgttccttaa cctctctg tgccccagGA chr16:25782764-25782844 34 3.87e-05 cacagactct cctctctg cttggtgtac chr8:142067690-142067770 65 3.87e-05 tctgtgcagc cctccctg attgctcc chr12:122281312-12228139 49 3.87e-05 tcagagaggc cctccctg accagtctct chr19:2281716-2281796 64 3.87e-05 GGTTTCCTGC CCTCTCTG GGCCCACTT chr19:3545390-3545470 38 3.87e-05 acacaggcct cctccctg ttcttccaac chr17:3790804-3790884 14 3.87e-05 ATCAGGGAGG CCTCCCTG GAAGAGAGGG chr19:39218797-39218877 73 7.65e-05 CCGCCACTGT CCTGTCTG chr2:27580246-27580326 5 7.65e-05 agct cctgtctg taatcccagc chr3:184484637-184484717 28 1.16e-04 acaaatgtca cctctctc atgaagccct chr19:3146863-3146943 44 1.16e-04 tcccctcctt cctctctc cccctcctca chr17:17656015-17656095 4 1.16e-04 GCC CCTCCCTC TCCTCACCAC chr20:60808915-60808995 19 1.52e-04 tttccttcct cctttctg gtcaggtatg chr19:13323887-13323967 45 1.52e-04 aagccagagt ccttcctg cagctcccat chr17:48347531-48347611 15 1.52e-04 tcctccctct ccttcctg ttgagagagg chr16:85499152-85499232 32 1.52e-04 cctggaagtc ccttcctg cctctcccta chr19:30277298-30277378 17 1.52e-04 ATGCTGGAGG CCTTCCTG GAGGAGGTGA chr1:26186884-26186964 7 1.90e-04 gatacg cctgcctc agcctcccaa chr2:10260138-10260218 41 1.90e-04 agagcaagac cctgtctc aaaacaaaaa chr8:41651817-41651897 37 1.90e-04 atgacacacg cctgcctc aggacctttg chr12:125106934-12510701 36 1.90e-04 CTGCTCAGGT CCTGCCTC AGGGCCTTTG chr6:34294458-34294538 29 1.90e-04 aagcaattct cctgcctc agcctcccga chr21:45357349-45357429 1 1.90e-04 . CCTGTCTC CTTGAGGTGA chr19:3234982-3235062 45 1.90e-04 cctcccgtga cctgcctc atccccttca chr8:37750352-37750432 14 1.90e-04 cccaggtatt cctgcctc agggcctttg chr10:72666255-72666335 43 1.90e-04 ttccaacagc cctgcctC ATCAAATGGA chr9:272569-272649 62 1.90e-04 aagcgatcct cctgcctc agcctcccaa chr12:114101273-11410135 54 2.27e-04 tcagggatgc ccaccctg attacgcctt chr19:1247905-1247985 69 2.27e-04 ACACTCCCAC CCACCCtg gaga chr16:27379300-27379380 57 2.27e-04 aagtgtttgc ccactctg ggcctaaatt chr19:18393683-18393763 59 2.65e-04 cacgtgctat gctctctg cttggtactc chr19:45197553-45197633 15 2.65e-04 gtcacaccag gctccctg ctgtccttat chr11:75434294-75434374 40 3.02e-04 TTTCCAGGAT CCTTCCTC ACCGCAGGCC chr19:4731039-4731119 19 3.02e-04 tctcctcttc cctttctc cccattgctc chr20:48842825-48842905 50 3.73e-04 tttttaactc ctTCTCTG AGCCATTgac chr15:68520969-68521049 5 3.73e-04 ctgt cttccctg ggtcccctac chr12:121063400-12106348 28 3.73e-04 ccattgcact ccagcctg ggcgataaga chr11:696506-696586 61 3.73e-04 tcatttgagg ccagcctg ggcaacatag chr7:73996965-73997045 59 3.73e-04 agattgcctt ccagtctg ATGAGCCAGG chr17:17580729-17580809 5 3.73e-04 aagc cttccctg aattccttga chr1:32246383-32246463 8 3.73e-04 tcctaac ccagcctg ctggcagtca chr19:16762695-16762775 56 3.73e-04 ATAGTGACTT CTTCCCTG CCCCAGGACC chr22:23407828-23407908 11 4.07e-04 ctgaaacggg cctacctg gcagggggtt chr11:66246365-66246445 25 4.07e-04 cctcagtttc cctatctg tacaatgggt chr20:48961201-48961281 72 4.44e-04 ctccatcttg gctgcctg c chr6:158430025-158430105 68 5.17e-04 cagtgctcct ccactctc catgc chr20:48914471-48914551 34 5.17e-04 gaatctaaca ccactctc ttttcttcat chr20:48804922-48805002 14 5.17e-04 TTCCCCCATA TCTCCCTG CATCTCTTCA chr1:17042633-17042713 5 5.86e-04 gacg cttgtctg gttcaccagc chr1:53603603-53603683 48 6.60e-04 tcctttggta gctttctg agaaagagtg chr6:34496203-34496283 44 6.60e-04 gtcagggaag gcttcctg gaggtggtgg chr9:127085459-127085539 50 6.60e-04 gtcagagaag gcttcctg gaggaggtga chr11:70079306-70079386 15 7.68e-04 attccttcct tctgcctg gaatgcaagc chr20:47386170-47386250 36 7.68e-04 ggctgtcccc tctgcctg gaacgcctgt chr1:10969893-10969973 62 1.09e-03 acctcgttgg cctctgtg aggcttgcaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTSYCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:80883966-80884046 3.9e-05 1_[+3]_71 chr3:5044687-5044767 3.9e-05 59_[+3]_13 chr16:4992237-4992317 3.9e-05 27_[+3]_45 chr19:44173525-44173605 3.9e-05 44_[+3]_28 chr9:130978567-130978647 3.9e-05 68_[+3]_4 chr11:74412642-74412722 3.9e-05 24_[+3]_48 chr7:5421069-5421149 3.9e-05 35_[+3]_37 chr9:132366801-132366881 3.9e-05 14_[+3]_58 chr1:25417506-25417586 3.9e-05 69_[+3]_3 chr15:101688500-10168858 3.9e-05 51_[+3]_21 chr6:36750684-36750764 3.9e-05 48_[+3]_24 chr19:17229914-17229994 3.9e-05 23_[+3]_49 chr19:3052248-3052328 3.9e-05 39_[+3]_33 chr20:49051653-49051733 3.9e-05 47_[+3]_25 chr16:25782764-25782844 3.9e-05 33_[+3]_39 chr8:142067690-142067770 3.9e-05 64_[+3]_8 chr12:122281312-12228139 3.9e-05 48_[+3]_24 chr19:2281716-2281796 3.9e-05 63_[+3]_9 chr19:3545390-3545470 3.9e-05 37_[+3]_35 chr17:3790804-3790884 3.9e-05 13_[+3]_59 chr19:39218797-39218877 7.7e-05 72_[+3] chr2:27580246-27580326 7.7e-05 4_[+3]_68 chr3:184484637-184484717 0.00012 27_[+3]_45 chr19:3146863-3146943 0.00012 43_[+3]_29 chr17:17656015-17656095 0.00012 3_[+3]_69 chr20:60808915-60808995 0.00015 18_[+3]_54 chr19:13323887-13323967 0.00015 44_[+3]_28 chr17:48347531-48347611 0.00015 14_[+3]_58 chr16:85499152-85499232 0.00015 31_[+3]_41 chr19:30277298-30277378 0.00015 16_[+3]_56 chr1:26186884-26186964 0.00019 6_[+3]_66 chr2:10260138-10260218 0.00019 40_[+3]_32 chr8:41651817-41651897 0.00019 36_[+3]_36 chr12:125106934-12510701 0.00019 35_[+3]_37 chr6:34294458-34294538 0.00019 28_[+3]_44 chr21:45357349-45357429 0.00019 [+3]_72 chr19:3234982-3235062 0.00019 44_[+3]_28 chr8:37750352-37750432 0.00019 13_[+3]_59 chr10:72666255-72666335 0.00019 42_[+3]_30 chr9:272569-272649 0.00019 61_[+3]_11 chr12:114101273-11410135 0.00023 53_[+3]_19 chr19:1247905-1247985 0.00023 68_[+3]_4 chr16:27379300-27379380 0.00023 56_[+3]_16 chr19:18393683-18393763 0.00027 58_[+3]_14 chr19:45197553-45197633 0.00027 14_[+3]_58 chr11:75434294-75434374 0.0003 39_[+3]_33 chr19:4731039-4731119 0.0003 18_[+3]_54 chr20:48842825-48842905 0.00037 49_[+3]_23 chr15:68520969-68521049 0.00037 4_[+3]_68 chr12:121063400-12106348 0.00037 27_[+3]_45 chr11:696506-696586 0.00037 60_[+3]_12 chr7:73996965-73997045 0.00037 58_[+3]_14 chr17:17580729-17580809 0.00037 4_[+3]_68 chr1:32246383-32246463 0.00037 7_[+3]_65 chr19:16762695-16762775 0.00037 55_[+3]_17 chr22:23407828-23407908 0.00041 10_[+3]_62 chr11:66246365-66246445 0.00041 24_[+3]_48 chr20:48961201-48961281 0.00044 71_[+3]_1 chr6:158430025-158430105 0.00052 67_[+3]_5 chr20:48914471-48914551 0.00052 33_[+3]_39 chr20:48804922-48805002 0.00052 13_[+3]_59 chr1:17042633-17042713 0.00059 4_[+3]_68 chr1:53603603-53603683 0.00066 47_[+3]_25 chr6:34496203-34496283 0.00066 43_[+3]_29 chr9:127085459-127085539 0.00066 49_[+3]_23 chr11:70079306-70079386 0.00077 14_[+3]_58 chr20:47386170-47386250 0.00077 35_[+3]_37 chr1:10969893-10969973 0.0011 61_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTSYCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTSYCTG width=8 seqs=68 chr10:80883966-80884046 ( 2) CCTCTCTG 1 chr3:5044687-5044767 ( 60) CCTCTCTG 1 chr16:4992237-4992317 ( 28) CCTCTCTG 1 chr19:44173525-44173605 ( 45) CCTCTCTG 1 chr9:130978567-130978647 ( 69) CCTCTCTG 1 chr11:74412642-74412722 ( 25) CCTCTCTG 1 chr7:5421069-5421149 ( 36) CCTCCCTG 1 chr9:132366801-132366881 ( 15) CCTCTCTG 1 chr1:25417506-25417586 ( 70) CCTCTCTG 1 chr15:101688500-10168858 ( 52) CCTCTCTG 1 chr6:36750684-36750764 ( 49) CCTCTCTG 1 chr19:17229914-17229994 ( 24) CCTCTCTG 1 chr19:3052248-3052328 ( 40) CCTCTCTG 1 chr20:49051653-49051733 ( 48) CCTCTCTG 1 chr16:25782764-25782844 ( 34) CCTCTCTG 1 chr8:142067690-142067770 ( 65) CCTCCCTG 1 chr12:122281312-12228139 ( 49) CCTCCCTG 1 chr19:2281716-2281796 ( 64) CCTCTCTG 1 chr19:3545390-3545470 ( 38) CCTCCCTG 1 chr17:3790804-3790884 ( 14) CCTCCCTG 1 chr19:39218797-39218877 ( 73) CCTGTCTG 1 chr2:27580246-27580326 ( 5) CCTGTCTG 1 chr3:184484637-184484717 ( 28) CCTCTCTC 1 chr19:3146863-3146943 ( 44) CCTCTCTC 1 chr17:17656015-17656095 ( 4) CCTCCCTC 1 chr20:60808915-60808995 ( 19) CCTTTCTG 1 chr19:13323887-13323967 ( 45) CCTTCCTG 1 chr17:48347531-48347611 ( 15) CCTTCCTG 1 chr16:85499152-85499232 ( 32) CCTTCCTG 1 chr19:30277298-30277378 ( 17) CCTTCCTG 1 chr1:26186884-26186964 ( 7) CCTGCCTC 1 chr2:10260138-10260218 ( 41) CCTGTCTC 1 chr8:41651817-41651897 ( 37) CCTGCCTC 1 chr12:125106934-12510701 ( 36) CCTGCCTC 1 chr6:34294458-34294538 ( 29) CCTGCCTC 1 chr21:45357349-45357429 ( 1) CCTGTCTC 1 chr19:3234982-3235062 ( 45) CCTGCCTC 1 chr8:37750352-37750432 ( 14) CCTGCCTC 1 chr10:72666255-72666335 ( 43) CCTGCCTC 1 chr9:272569-272649 ( 62) CCTGCCTC 1 chr12:114101273-11410135 ( 54) CCACCCTG 1 chr19:1247905-1247985 ( 69) CCACCCTG 1 chr16:27379300-27379380 ( 57) CCACTCTG 1 chr19:18393683-18393763 ( 59) GCTCTCTG 1 chr19:45197553-45197633 ( 15) GCTCCCTG 1 chr11:75434294-75434374 ( 40) CCTTCCTC 1 chr19:4731039-4731119 ( 19) CCTTTCTC 1 chr20:48842825-48842905 ( 50) CTTCTCTG 1 chr15:68520969-68521049 ( 5) CTTCCCTG 1 chr12:121063400-12106348 ( 28) CCAGCCTG 1 chr11:696506-696586 ( 61) CCAGCCTG 1 chr7:73996965-73997045 ( 59) CCAGTCTG 1 chr17:17580729-17580809 ( 5) CTTCCCTG 1 chr1:32246383-32246463 ( 8) CCAGCCTG 1 chr19:16762695-16762775 ( 56) CTTCCCTG 1 chr22:23407828-23407908 ( 11) CCTACCTG 1 chr11:66246365-66246445 ( 25) CCTATCTG 1 chr20:48961201-48961281 ( 72) GCTGCCTG 1 chr6:158430025-158430105 ( 68) CCACTCTC 1 chr20:48914471-48914551 ( 34) CCACTCTC 1 chr20:48804922-48805002 ( 14) TCTCCCTG 1 chr1:17042633-17042713 ( 5) CTTGTCTG 1 chr1:53603603-53603683 ( 48) GCTTTCTG 1 chr6:34496203-34496283 ( 44) GCTTCCTG 1 chr9:127085459-127085539 ( 50) GCTTCCTG 1 chr11:70079306-70079386 ( 15) TCTGCCTG 1 chr20:47386170-47386250 ( 36) TCTGCCTG 1 chr1:10969893-10969973 ( 62) CCTCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTSYCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.13256 E= 6.3e-009 -1273 171 -155 -247 -1273 181 -1273 -173 -81 -1273 -1273 183 -298 100 18 -73 -1273 96 -1273 99 -1273 189 -413 -1273 -1273 -1273 -1273 204 -1273 -8 153 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTSYCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 6.3e-009 0.000000 0.867647 0.088235 0.044118 0.000000 0.926471 0.000000 0.073529 0.132353 0.000000 0.000000 0.867647 0.029412 0.529412 0.294118 0.147059 0.000000 0.514706 0.000000 0.485294 0.000000 0.985294 0.014706 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTSYCTG MEME-3 regular expression -------------------------------------------------------------------------------- CCT[CG][CT]CT[GC] -------------------------------------------------------------------------------- Time 12.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGTGTG MEME-4 width = 8 sites = 42 llr = 347 E-value = 7.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3:2::: pos.-specific C 2a:::::1 probability G 8::a:a18 matrix T ::7:8:9: bits 2.1 1.9 * * * 1.7 * * * 1.5 * * ** Relative 1.3 ******* Entropy 1.1 ******* (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGTGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:117236445-117236525 65 1.73e-05 gaatgaggtg gctgtgtG GCTGAAGC chr1:27834957-27835037 39 1.73e-05 ccgcttacta gctgtgtg tctcaaagcc chr10:22658496-22658576 38 1.73e-05 ccatttagtt gctgtgtg acctcggaca chr8:103540862-103540942 65 1.73e-05 tgctccgtgc gctgtgtg ctgcgcgt chr19:44173525-44173605 17 1.73e-05 tcaagcactg gctgtgtg attttaggcc chr9:140795272-140795352 18 1.73e-05 ttgtgtctgt gctgtgtg tccctgtgtc chr9:130978567-130978647 41 1.73e-05 tccccactct gctgtgtg accttgggtg chr1:25417506-25417586 43 1.73e-05 cctccaactc gctgtgtg accttggcaa chr15:101688500-10168858 24 1.73e-05 ctgctcactg gctgtgtg acctggagca chr19:3052248-3052328 12 1.73e-05 CCTGGGCCAT GCTGTGTG ACCTGAAGTC chr20:49051653-49051733 20 1.73e-05 TTCctcacct gctgtgtg accttgaaga chr19:2281716-2281796 36 1.73e-05 CTGGGGCCCT GCTGTGTG ATCCCGAGTG chr10:81176431-81176511 70 1.73e-05 acatgtccaa gctgtgtg acc chr9:140795072-140795152 31 1.73e-05 gtgtgtctgt gctgtgtg tccctgtgtt chr16:27379300-27379380 29 1.73e-05 ccaattccaa gctgtgtg accatgggaa chr3:5044687-5044767 32 3.38e-05 cttcttcaca gcagtgtg actctgggca chr19:19282729-19282809 46 3.38e-05 TGTGACATGG GCAGTGTG GGCCTCTAGT chr19:50373568-50373648 49 5.03e-05 AGCCATTAAG GCTGAGTG CACCGTCTCA chr20:48910805-48910885 70 5.03e-05 GGCTTGGTGG GCTGAGTG AGC chr11:67594550-67594630 12 8.57e-05 cctcctgcaa cctgtgtg actttgagaa chr11:3465749-3465829 2 8.57e-05 a cctgtgtg actttgagag chr19:10526481-10526561 70 8.57e-05 cagcatgctt gctgtgtc cag chr1:32246383-32246463 57 8.57e-05 caatgcctgc gctgtgtc ccacaatgac chr1:12249307-12249387 71 1.04e-04 ctctttcctt gctgtggg at chr19:3484983-3485063 21 1.20e-04 tgtggctgga gcagagtg agccggggga chr19:4139640-4139720 63 1.20e-04 tgtagctata gcagagtg agcaaggggg chr19:5480539-5480619 26 1.20e-04 tgtggctgga gcagagtg agtgaggggg chr9:127085459-127085539 5 1.53e-04 ggag ccagtgtg aacaagccat chr20:31157016-31157096 33 1.53e-04 agccaggagg ccagtgtg gctgaaggaa chr19:45074028-45074108 33 1.53e-04 agcagggaag ccagtgtg gttggagttg chr15:68572841-68572921 62 1.70e-04 tgacgttcga gctgtgtt ttaaagaata chr7:73735040-73735120 59 1.87e-04 TGGGGGCAGG GCAGTGGG TGGAGTTTGA chr19:10415856-10415936 64 1.87e-04 CATTTAGGAT GCAGTGGG GGCCCGGAA chr6:43756260-43756340 16 1.87e-04 ttcctcagat gcagtggg catgctcctg chr19:3321015-3321095 43 2.21e-04 CCTGCAAGCC GCTGAGTC TGTCCCTCCA chr6:34485354-34485434 38 2.21e-04 gttcaggctg cctgagtg ctctgcctgg chr8:37757658-37757738 37 2.21e-04 tacttgggag gctgagtc tggaggatct chr19:3250776-3250856 16 2.55e-04 catgttgcag cctgtgtc agaatttcct chr12:110253152-11025323 60 2.55e-04 ATGTGGACTT GCTGTGTA GGCCGGCAGT chr16:84986092-84986172 39 3.06e-04 TTCCATTAAC GCTGGGTG AACACCGCTC chr19:48926830-48926910 57 3.06e-04 tgaggaaggt gcagtgtt ggtttactgg chr17:3790804-3790884 50 3.44e-04 AGTGAGTGCG GCTGTGGC ACAAGGAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:117236445-117236525 1.7e-05 64_[+4]_8 chr1:27834957-27835037 1.7e-05 38_[+4]_34 chr10:22658496-22658576 1.7e-05 37_[+4]_35 chr8:103540862-103540942 1.7e-05 64_[+4]_8 chr19:44173525-44173605 1.7e-05 16_[+4]_56 chr9:140795272-140795352 1.7e-05 17_[+4]_55 chr9:130978567-130978647 1.7e-05 40_[+4]_32 chr1:25417506-25417586 1.7e-05 42_[+4]_30 chr15:101688500-10168858 1.7e-05 23_[+4]_49 chr19:3052248-3052328 1.7e-05 11_[+4]_61 chr20:49051653-49051733 1.7e-05 19_[+4]_53 chr19:2281716-2281796 1.7e-05 35_[+4]_37 chr10:81176431-81176511 1.7e-05 69_[+4]_3 chr9:140795072-140795152 1.7e-05 30_[+4]_42 chr16:27379300-27379380 1.7e-05 28_[+4]_44 chr3:5044687-5044767 3.4e-05 31_[+4]_41 chr19:19282729-19282809 3.4e-05 45_[+4]_27 chr19:50373568-50373648 5e-05 48_[+4]_24 chr20:48910805-48910885 5e-05 69_[+4]_3 chr11:67594550-67594630 8.6e-05 11_[+4]_61 chr11:3465749-3465829 8.6e-05 1_[+4]_71 chr19:10526481-10526561 8.6e-05 69_[+4]_3 chr1:32246383-32246463 8.6e-05 56_[+4]_16 chr1:12249307-12249387 0.0001 70_[+4]_2 chr19:3484983-3485063 0.00012 20_[+4]_52 chr19:4139640-4139720 0.00012 62_[+4]_10 chr19:5480539-5480619 0.00012 25_[+4]_47 chr9:127085459-127085539 0.00015 4_[+4]_68 chr20:31157016-31157096 0.00015 32_[+4]_40 chr19:45074028-45074108 0.00015 32_[+4]_40 chr15:68572841-68572921 0.00017 61_[+4]_11 chr7:73735040-73735120 0.00019 58_[+4]_14 chr19:10415856-10415936 0.00019 63_[+4]_9 chr6:43756260-43756340 0.00019 15_[+4]_57 chr19:3321015-3321095 0.00022 42_[+4]_30 chr6:34485354-34485434 0.00022 37_[+4]_35 chr8:37757658-37757738 0.00022 36_[+4]_36 chr19:3250776-3250856 0.00025 15_[+4]_57 chr12:110253152-11025323 0.00025 59_[+4]_13 chr16:84986092-84986172 0.00031 38_[+4]_34 chr19:48926830-48926910 0.00031 56_[+4]_16 chr17:3790804-3790884 0.00034 49_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGTGTG width=8 seqs=42 chr1:117236445-117236525 ( 65) GCTGTGTG 1 chr1:27834957-27835037 ( 39) GCTGTGTG 1 chr10:22658496-22658576 ( 38) GCTGTGTG 1 chr8:103540862-103540942 ( 65) GCTGTGTG 1 chr19:44173525-44173605 ( 17) GCTGTGTG 1 chr9:140795272-140795352 ( 18) GCTGTGTG 1 chr9:130978567-130978647 ( 41) GCTGTGTG 1 chr1:25417506-25417586 ( 43) GCTGTGTG 1 chr15:101688500-10168858 ( 24) GCTGTGTG 1 chr19:3052248-3052328 ( 12) GCTGTGTG 1 chr20:49051653-49051733 ( 20) GCTGTGTG 1 chr19:2281716-2281796 ( 36) GCTGTGTG 1 chr10:81176431-81176511 ( 70) GCTGTGTG 1 chr9:140795072-140795152 ( 31) GCTGTGTG 1 chr16:27379300-27379380 ( 29) GCTGTGTG 1 chr3:5044687-5044767 ( 32) GCAGTGTG 1 chr19:19282729-19282809 ( 46) GCAGTGTG 1 chr19:50373568-50373648 ( 49) GCTGAGTG 1 chr20:48910805-48910885 ( 70) GCTGAGTG 1 chr11:67594550-67594630 ( 12) CCTGTGTG 1 chr11:3465749-3465829 ( 2) CCTGTGTG 1 chr19:10526481-10526561 ( 70) GCTGTGTC 1 chr1:32246383-32246463 ( 57) GCTGTGTC 1 chr1:12249307-12249387 ( 71) GCTGTGGG 1 chr19:3484983-3485063 ( 21) GCAGAGTG 1 chr19:4139640-4139720 ( 63) GCAGAGTG 1 chr19:5480539-5480619 ( 26) GCAGAGTG 1 chr9:127085459-127085539 ( 5) CCAGTGTG 1 chr20:31157016-31157096 ( 33) CCAGTGTG 1 chr19:45074028-45074108 ( 33) CCAGTGTG 1 chr15:68572841-68572921 ( 62) GCTGTGTT 1 chr7:73735040-73735120 ( 59) GCAGTGGG 1 chr19:10415856-10415936 ( 64) GCAGTGGG 1 chr6:43756260-43756340 ( 16) GCAGTGGG 1 chr19:3321015-3321095 ( 43) GCTGAGTC 1 chr6:34485354-34485434 ( 38) CCTGAGTG 1 chr8:37757658-37757738 ( 37) GCTGAGTC 1 chr19:3250776-3250856 ( 16) CCTGTGTC 1 chr12:110253152-11025323 ( 60) GCTGTGTA 1 chr16:84986092-84986172 ( 39) GCTGGGTG 1 chr19:48926830-48926910 ( 57) GCAGTGTT 1 chr17:3790804-3790884 ( 50) GCTGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.74794 E= 7.3e-008 -1204 -67 169 -1204 -1204 192 -1204 -1204 30 -1204 -1204 155 -1204 -1204 195 -1204 -29 -1204 -344 169 -1204 -1204 195 -1204 -1204 -1204 -112 185 -328 -89 160 -236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 7.3e-008 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.190476 0.000000 0.023810 0.785714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.119048 0.880952 0.023810 0.142857 0.785714 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- GC[TA]GTGTG -------------------------------------------------------------------------------- Time 15.49 secs. ******************************************************************************** ******************************************************************************** MOTIF DSCMCAGG MEME-5 width = 8 sites = 57 llr = 432 E-value = 1.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif DSCMCAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::43a:: pos.-specific C :5a47::: probability G 35::::aa matrix T 4::2:::: bits 2.1 * 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 * **** (10.9 bits) 0.8 ** **** 0.6 ** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCACAGG consensus AC CA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCMCAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:148660716-148660796 69 3.43e-05 ctcactatat tgcccagg ctgg chr1:19578838-19578918 32 3.43e-05 ctcgctctgt tgcccagg ctggagtgca chr9:272569-272649 22 3.43e-05 ctcgctatgt tgcccagg ctggtcttga chr12:114101273-11410135 73 5.07e-05 ttacgccttc tccacagg chr11:70079306-70079386 44 8.47e-05 tgatagctgg agcacagg cagctatatt chr2:10611286-10611366 28 8.47e-05 tcgaggagac agcacagg caaaaaaaag chr19:45320596-45320676 34 8.47e-05 ggtagctggg agcacagg aggaatgggg chr17:39677867-39677947 17 8.47e-05 CCTCTCCTGT TCCCcagg gaaatgccag chr12:31000320-31000400 65 8.47e-05 ttaacgtctc tccccagg cacaagtg chr1:47341947-47342027 52 8.47e-05 ataatgtctc tccccagg cacaagcact chr2:27580246-27580326 57 1.19e-04 ggatcacttg agcccagg aattcgatac chr6:37014250-37014330 34 1.19e-04 ggatggtttg agcccagg agtttgaggc chr15:77926820-77926900 36 1.19e-04 gagggaggga agcccagg cccagagagg chr8:37757658-37757738 59 1.19e-04 ggatctctgg agcccagg aggtcgaggt chr12:110253152-11025323 25 1.19e-04 GTGGGCTTCA GGCACAGG AGGGGCTCAG chr17:17656015-17656095 20 1.54e-04 TCTCCTCACC ACCACAGG GCCTTTGCAC chr1:117236445-117236525 36 2.03e-04 caacagcaag tgcaaagg ccctgaggca chr19:18156260-18156340 17 2.03e-04 ccagagctgc tgcaaagG GGCATGtccc chr6:717286-717366 71 2.03e-04 ATCCGGGaag tgcaaagg cc chr19:3210724-3210804 73 2.03e-04 ttgggctttg accccagg chr1:25068717-25068797 38 2.03e-04 gaagagcaaa tgcaaagg ccctgaggcc chr11:44555927-44556007 23 2.03e-04 aaacagcaag tgcaaagg ccctgaggca chr19:19170704-19170784 13 2.03e-04 ctattccccc accccagg gcctttgcac chr16:25782764-25782844 9 2.03e-04 gatttcct accccagg gcctttgcac chr2:208905731-208905811 18 2.03e-04 gctcattcct gccacagg gcctttgcat chr19:10526481-10526561 41 2.03e-04 gaactgaaag tgcaaagg gcctgaggca chr19:48926830-48926910 36 2.03e-04 gaacagagtg tgcaaagg gcctgaggaa chr2:24703275-24703355 17 2.03e-04 tccatgttcc tgcaaagg acatgatctc chr19:16831226-16831306 45 2.03e-04 gtacaggacg tgcaaagg ccctgaggtt chr16:81516839-81516919 62 2.03e-04 ccacagcatg tgcaaagg ccctggggca chr6:43756260-43756340 33 2.03e-04 gcatgctcct gccacagg gcctttgcac chr1:44016523-44016603 60 2.03e-04 cagcagctta tgcaaagg ccctgtggct chr19:14310983-14311063 10 2.03e-04 cacagcccg tgcaaagg ccctggggct chr14:78389648-78389728 28 2.03e-04 gaatagcatg tgcaaagg ccctgaggcc chr19:5354533-5354613 54 2.03e-04 ggccttcttg gccacagg aagacttggg chr20:47386170-47386250 7 2.03e-04 gctctt gccacagg acctttgcac chr12:113767712-11376779 58 2.39e-04 ttctgctcct gccccagg gcctttgcat chr19:45197553-45197633 52 2.39e-04 agcccctcct gccccagg gccttgaatt chr19:17229914-17229994 53 2.39e-04 gatctctcac gccccagg gcctttgcat chr20:49051653-49051733 57 2.39e-04 acctctctgt gccccagG AGGATAATAT chr6:34485354-34485434 5 2.39e-04 ttct gccccagg gcctttgcat chr19:16762695-16762775 1 2.39e-04 . GCCCCAGG ACCTTTGCAA chr20:48961201-48961281 7 3.00e-04 aatgcc tcccaagg cctgcagcct chr12:125106934-12510701 64 3.00e-04 CACCTGCACC TGCTCAGG TCCTGCCTT chr2:172386553-172386633 62 3.30e-04 tgtggccaca agccaagg aaaatggaga chr2:24234752-24234832 61 3.30e-04 gaatgggaag ggcaaagg ccctgaggca chr2:9900381-9900461 65 3.30e-04 aggagaaggt agccaagg gaaggaaa chr7:44690041-44690121 24 3.78e-04 ggtacctacc tcctcagg tggtttcaaa chr20:31157016-31157096 61 3.78e-04 agtgagcagg ggccaagg aactggaaag chr20:48914471-48914551 9 4.25e-04 aggatttg agctcagg ccatctggaa chr11:696506-696586 4 4.60e-04 agt ggctcagg cctgtaagcc chr11:66246365-66246445 54 4.77e-04 aagtgatcat acctcagg atttttgcaa chr19:13389112-13389192 60 4.77e-04 agatgcttcc acctcagg gcctttgcac chr20:34204751-34204831 30 4.77e-04 cgaactcccg acctcagg tgatccgccc chr8:103743481-103743561 53 5.10e-04 gcaagctctg gcctcagg gtctttgcat chr19:4552036-4552116 54 5.10e-04 actcactgaa gcctcagg acctttgcac chr16:85321086-85321166 58 5.10e-04 ccacgccgct gcctcagg gcctttgtac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCMCAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:148660716-148660796 3.4e-05 68_[+5]_4 chr1:19578838-19578918 3.4e-05 31_[+5]_41 chr9:272569-272649 3.4e-05 21_[+5]_51 chr12:114101273-11410135 5.1e-05 72_[+5] chr11:70079306-70079386 8.5e-05 43_[+5]_29 chr2:10611286-10611366 8.5e-05 27_[+5]_45 chr19:45320596-45320676 8.5e-05 33_[+5]_39 chr17:39677867-39677947 8.5e-05 16_[+5]_56 chr12:31000320-31000400 8.5e-05 64_[+5]_8 chr1:47341947-47342027 8.5e-05 51_[+5]_21 chr2:27580246-27580326 0.00012 56_[+5]_16 chr6:37014250-37014330 0.00012 33_[+5]_39 chr15:77926820-77926900 0.00012 35_[+5]_37 chr8:37757658-37757738 0.00012 58_[+5]_14 chr12:110253152-11025323 0.00012 24_[+5]_48 chr17:17656015-17656095 0.00015 19_[+5]_53 chr1:117236445-117236525 0.0002 35_[+5]_37 chr19:18156260-18156340 0.0002 16_[+5]_56 chr6:717286-717366 0.0002 70_[+5]_2 chr19:3210724-3210804 0.0002 72_[+5] chr1:25068717-25068797 0.0002 37_[+5]_35 chr11:44555927-44556007 0.0002 22_[+5]_50 chr19:19170704-19170784 0.0002 12_[+5]_60 chr16:25782764-25782844 0.0002 8_[+5]_64 chr2:208905731-208905811 0.0002 17_[+5]_55 chr19:10526481-10526561 0.0002 40_[+5]_32 chr19:48926830-48926910 0.0002 35_[+5]_37 chr2:24703275-24703355 0.0002 16_[+5]_56 chr19:16831226-16831306 0.0002 44_[+5]_28 chr16:81516839-81516919 0.0002 61_[+5]_11 chr6:43756260-43756340 0.0002 32_[+5]_40 chr1:44016523-44016603 0.0002 59_[+5]_13 chr19:14310983-14311063 0.0002 9_[+5]_63 chr14:78389648-78389728 0.0002 27_[+5]_45 chr19:5354533-5354613 0.0002 53_[+5]_19 chr20:47386170-47386250 0.0002 6_[+5]_66 chr12:113767712-11376779 0.00024 57_[+5]_15 chr19:45197553-45197633 0.00024 51_[+5]_21 chr19:17229914-17229994 0.00024 52_[+5]_20 chr20:49051653-49051733 0.00024 56_[+5]_16 chr6:34485354-34485434 0.00024 4_[+5]_68 chr19:16762695-16762775 0.00024 [+5]_72 chr20:48961201-48961281 0.0003 6_[+5]_66 chr12:125106934-12510701 0.0003 63_[+5]_9 chr2:172386553-172386633 0.00033 61_[+5]_11 chr2:24234752-24234832 0.00033 60_[+5]_12 chr2:9900381-9900461 0.00033 64_[+5]_8 chr7:44690041-44690121 0.00038 23_[+5]_49 chr20:31157016-31157096 0.00038 60_[+5]_12 chr20:48914471-48914551 0.00043 8_[+5]_64 chr11:696506-696586 0.00046 3_[+5]_69 chr11:66246365-66246445 0.00048 53_[+5]_19 chr19:13389112-13389192 0.00048 59_[+5]_13 chr20:34204751-34204831 0.00048 29_[+5]_43 chr8:103743481-103743561 0.00051 52_[+5]_20 chr19:4552036-4552116 0.00051 53_[+5]_19 chr16:85321086-85321166 0.00051 57_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCMCAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DSCMCAGG width=8 seqs=57 chr7:148660716-148660796 ( 69) TGCCCAGG 1 chr1:19578838-19578918 ( 32) TGCCCAGG 1 chr9:272569-272649 ( 22) TGCCCAGG 1 chr12:114101273-11410135 ( 73) TCCACAGG 1 chr11:70079306-70079386 ( 44) AGCACAGG 1 chr2:10611286-10611366 ( 28) AGCACAGG 1 chr19:45320596-45320676 ( 34) AGCACAGG 1 chr17:39677867-39677947 ( 17) TCCCCAGG 1 chr12:31000320-31000400 ( 65) TCCCCAGG 1 chr1:47341947-47342027 ( 52) TCCCCAGG 1 chr2:27580246-27580326 ( 57) AGCCCAGG 1 chr6:37014250-37014330 ( 34) AGCCCAGG 1 chr15:77926820-77926900 ( 36) AGCCCAGG 1 chr8:37757658-37757738 ( 59) AGCCCAGG 1 chr12:110253152-11025323 ( 25) GGCACAGG 1 chr17:17656015-17656095 ( 20) ACCACAGG 1 chr1:117236445-117236525 ( 36) TGCAAAGG 1 chr19:18156260-18156340 ( 17) TGCAAAGG 1 chr6:717286-717366 ( 71) TGCAAAGG 1 chr19:3210724-3210804 ( 73) ACCCCAGG 1 chr1:25068717-25068797 ( 38) TGCAAAGG 1 chr11:44555927-44556007 ( 23) TGCAAAGG 1 chr19:19170704-19170784 ( 13) ACCCCAGG 1 chr16:25782764-25782844 ( 9) ACCCCAGG 1 chr2:208905731-208905811 ( 18) GCCACAGG 1 chr19:10526481-10526561 ( 41) TGCAAAGG 1 chr19:48926830-48926910 ( 36) TGCAAAGG 1 chr2:24703275-24703355 ( 17) TGCAAAGG 1 chr19:16831226-16831306 ( 45) TGCAAAGG 1 chr16:81516839-81516919 ( 62) TGCAAAGG 1 chr6:43756260-43756340 ( 33) GCCACAGG 1 chr1:44016523-44016603 ( 60) TGCAAAGG 1 chr19:14310983-14311063 ( 10) TGCAAAGG 1 chr14:78389648-78389728 ( 28) TGCAAAGG 1 chr19:5354533-5354613 ( 54) GCCACAGG 1 chr20:47386170-47386250 ( 7) GCCACAGG 1 chr12:113767712-11376779 ( 58) GCCCCAGG 1 chr19:45197553-45197633 ( 52) GCCCCAGG 1 chr19:17229914-17229994 ( 53) GCCCCAGG 1 chr20:49051653-49051733 ( 57) GCCCCAGG 1 chr6:34485354-34485434 ( 5) GCCCCAGG 1 chr19:16762695-16762775 ( 1) GCCCCAGG 1 chr20:48961201-48961281 ( 7) TCCCAAGG 1 chr12:125106934-12510701 ( 64) TGCTCAGG 1 chr2:172386553-172386633 ( 62) AGCCAAGG 1 chr2:24234752-24234832 ( 61) GGCAAAGG 1 chr2:9900381-9900461 ( 65) AGCCAAGG 1 chr7:44690041-44690121 ( 24) TCCTCAGG 1 chr20:31157016-31157096 ( 61) GGCCAAGG 1 chr20:48914471-48914551 ( 9) AGCTCAGG 1 chr11:696506-696586 ( 4) GGCTCAGG 1 chr11:66246365-66246445 ( 54) ACCTCAGG 1 chr19:13389112-13389192 ( 60) ACCTCAGG 1 chr20:34204751-34204831 ( 30) ACCTCAGG 1 chr8:103743481-103743561 ( 53) GCCTCAGG 1 chr19:4552036-4552116 ( 54) GCCTCAGG 1 chr16:85321086-85321166 ( 58) GCCTCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCMCAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.55676 E= 1.7e-005 36 -1248 20 73 -1248 78 107 -1248 -1248 192 -1248 -1248 86 61 -1248 -48 44 137 -1248 -1248 211 -1248 -1248 -1248 -1248 -1248 195 -1248 -1248 -1248 195 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCMCAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.7e-005 0.298246 0.000000 0.298246 0.403509 0.000000 0.456140 0.543860 0.000000 0.000000 1.000000 0.000000 0.000000 0.421053 0.403509 0.000000 0.175439 0.315789 0.684211 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSCMCAGG MEME-5 regular expression -------------------------------------------------------------------------------- [TAG][GC]C[AC][CA]AGG -------------------------------------------------------------------------------- Time 18.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:5480539-5480619 3.62e-03 63_[+2(1.66e-05)]_9 chr19:16762695-16762775 1.54e-05 9_[+1(1.62e-05)]_54_[+1(1.62e-05)]_\ 1 chr20:47386170-47386250 8.49e-04 15_[+1(1.62e-05)]_57 chr16:85321086-85321166 8.93e-03 80 chr1:32246383-32246463 2.47e-04 23_[+2(7.97e-05)]_25_[+4(8.57e-05)]_\ 16 chr19:5354533-5354613 5.66e-03 80 chr19:30277298-30277378 4.38e-02 80 chr19:18914491-18914571 1.67e-02 43_[+2(4.78e-05)]_29 chr15:68572841-68572921 9.46e-02 80 chr17:3790804-3790884 3.92e-05 5_[+2(1.66e-05)]_[+3(3.87e-05)]_45_\ [+3(3.87e-05)]_6 chr1:10952367-10952447 4.64e-01 80 chr19:43731311-43731391 7.32e-01 80 chr1:30982664-30982744 7.36e-01 80 chr17:17580729-17580809 3.74e-02 80 chr7:99829040-99829120 6.72e-01 80 chr22:22405699-22405779 6.88e-01 80 chr16:27379300-27379380 1.60e-03 28_[+4(1.73e-05)]_44 chr2:242699921-242700001 4.50e-01 80 chr19:35797442-35797522 7.06e-02 80 chr20:48910805-48910885 1.10e-01 69_[+4(5.03e-05)]_3 chr14:78389648-78389728 1.45e-02 80 chr19:4590691-4590771 6.33e-02 45_[+2(6.48e-05)]_27 chr9:272569-272649 2.06e-04 21_[+5(3.43e-05)]_51 chr19:14310983-14311063 4.04e-02 80 chr19:45074028-45074108 7.13e-03 24_[+2(7.97e-05)]_48 chr6:2987994-2988074 2.68e-02 80 chr20:36025652-36025732 2.73e-01 80 chr1:44016523-44016603 6.40e-02 80 chr19:49933648-49933728 7.99e-03 34_[+2(3.15e-05)]_38 chr9:140795072-140795152 4.77e-02 30_[+4(1.73e-05)]_42 chr10:81176431-81176511 8.19e-04 69_[+4(1.73e-05)]_3 chr22:20250377-20250457 6.72e-02 80 chr7:75849609-75849689 6.76e-02 19_[+2(7.97e-05)]_53 chr22:28082127-28082207 4.61e-02 18_[+2(7.97e-05)]_54 chr12:110253152-11025323 1.61e-02 80 chr19:3545390-3545470 2.36e-02 37_[+3(3.87e-05)]_35 chr19:2281716-2281796 2.63e-03 20_[+3(3.87e-05)]_7_[+4(1.73e-05)]_\ 20_[+3(3.87e-05)]_9 chr22:39835377-39835457 3.70e-02 80 chr6:43756260-43756340 7.11e-05 41_[+1(1.62e-05)]_31 chr19:51662046-51662126 3.04e-01 80 chr19:4139640-4139720 1.61e-03 80 chr9:130976551-130976631 1.47e-02 54_[+2(3.15e-05)]_18 chr10:72666255-72666335 4.31e-02 80 chr8:37750352-37750432 5.49e-05 29_[+5(1.60e-05)]_43 chr20:34204751-34204831 1.21e-01 80 chr22:28065132-28065212 6.18e-02 18_[+2(3.15e-05)]_54 chr1:17042633-17042713 3.79e-01 80 chr8:915436-915516 2.73e-02 80 chr9:37591514-37591594 2.76e-01 80 chr19:10415856-10415936 2.84e-01 80 chr1:23916710-23916790 1.99e-02 17_[+2(1.66e-05)]_55 chr17:17656015-17656095 2.65e-04 28_[+1(1.62e-05)]_44 chr1:21969393-21969473 5.84e-01 80 chr16:81516839-81516919 4.62e-02 80 chr1:47341947-47342027 8.61e-02 51_[+5(8.47e-05)]_21 chr17:46092120-46092200 6.45e-03 4_[+1(4.93e-05)]_68 chr2:9900381-9900461 5.91e-03 12_[+2(1.66e-05)]_60 chr19:16831226-16831306 1.67e-01 80 chr19:3250776-3250856 6.59e-02 80 chr10:74026442-74026522 3.58e-01 80 chr9:130925517-130925597 8.42e-01 80 chr12:31000320-31000400 6.59e-02 64_[+5(8.47e-05)]_8 chr1:31231115-31231195 5.06e-02 30_[+2(9.42e-05)]_42 chr5:173098630-173098710 2.70e-01 80 chr19:3234982-3235062 3.07e-01 80 chr1:228267387-228267467 3.69e-04 53_[+2(4.78e-05)]_19 chr20:31157016-31157096 5.37e-03 80 chr19:13389112-13389192 4.73e-04 72_[+5(1.60e-05)] chr21:45357349-45357429 4.23e-03 29_[+1(4.93e-05)]_43 chr2:24703275-24703355 1.72e-01 80 chr19:5170481-5170561 1.18e-01 80 chr17:39677867-39677947 2.02e-03 16_[+5(8.47e-05)]_56 chr22:17036509-17036589 5.25e-02 57_[+1(1.62e-05)]_15 chr19:48926830-48926910 9.19e-03 80 chr12:122281312-12228139 2.16e-04 39_[+2(3.15e-05)]_1_[+3(3.87e-05)]_\ 24 chr8:37757658-37757738 7.82e-03 80 chr8:142067690-142067770 2.22e-03 64_[+3(3.87e-05)]_8 chr7:73996965-73997045 7.48e-02 80 chr19:513614-513694 5.19e-01 80 chr16:85499152-85499232 4.13e-01 80 chr6:34485354-34485434 4.22e-05 13_[+1(1.62e-05)]_59 chr9:139650531-139650611 2.55e-01 80 chrX:223113-223193 2.47e-01 80 chr1:205647169-205647249 2.61e-01 80 chr16:87350493-87350573 5.90e-01 80 chr16:8869461-8869541 7.49e-01 80 chr19:5310034-5310114 6.50e-02 80 chr6:34294458-34294538 1.34e-01 80 chr19:10526481-10526561 7.01e-03 69_[+4(8.57e-05)]_3 chr1:31228364-31228444 2.62e-01 80 chr11:3465749-3465829 5.12e-02 1_[+4(8.57e-05)]_71 chr1:55487675-55487755 5.01e-01 80 chr19:10879841-10879921 1.80e-01 80 chr1:19578838-19578918 4.34e-04 31_[+5(3.43e-05)]_41 chr19:4552036-4552116 2.35e-03 62_[+1(1.62e-05)]_10 chr21:15347083-15347163 9.76e-01 80 chr7:4659487-4659567 4.33e-01 80 chr17:29046441-29046521 1.46e-02 80 chr2:208905731-208905811 2.17e-03 26_[+1(1.62e-05)]_46 chr6:34537252-34537332 7.58e-02 61_[+2(3.15e-05)]_11 chr3:13290308-13290388 7.84e-03 17_[+2(3.15e-05)]_55 chr19:17639588-17639668 5.61e-01 80 chr16:25782764-25782844 9.32e-05 17_[+1(1.62e-05)]_8_[+3(3.87e-05)]_\ 27_[+1(6.66e-05)]_4 chr20:49051653-49051733 8.22e-05 19_[+4(1.73e-05)]_20_[+3(3.87e-05)]_\ 25 chr1:23918780-23918860 8.46e-01 80 chr1:24435704-24435784 5.94e-02 80 chr1:15365047-15365127 3.58e-01 80 chr19:3324681-3324761 2.35e-01 80 chr19:3052248-3052328 4.62e-04 11_[+4(1.73e-05)]_20_[+3(3.87e-05)]_\ 33 chr9:131523137-131523217 7.89e-02 80 chr19:1247905-1247985 3.32e-01 80 chr11:36313935-36314015 1.75e-01 80 chr22:30662482-30662562 1.42e-02 80 chr19:2648748-2648828 6.60e-02 80 chr1:36945264-36945344 4.81e-01 80 chr19:17229914-17229994 5.83e-05 23_[+3(3.87e-05)]_30_[+1(1.62e-05)]_\ 11 chr19:45320596-45320676 4.79e-02 33_[+5(8.47e-05)]_39 chr2:219152989-219153069 9.58e-02 80 chr6:36750684-36750764 2.22e-02 48_[+3(3.87e-05)]_24 chr6:6881094-6881174 6.12e-01 80 chr19:45197553-45197633 4.28e-02 80 chr22:35779450-35779530 1.67e-01 80 chr12:125106934-12510701 5.83e-04 10_[+1(1.62e-05)]_29_[+1(1.62e-05)]_\ 25 chr11:58939297-58939377 2.76e-01 80 chr15:101688500-10168858 5.51e-04 23_[+4(1.73e-05)]_20_[+3(3.87e-05)]_\ 21 chr1:25417506-25417586 2.23e-06 42_[+4(1.73e-05)]_1_[+1(6.66e-05)]_\ 10_[+3(3.87e-05)]_3 chr19:4731039-4731119 1.13e-01 80 chr19:2168729-2168809 4.62e-01 80 chr9:132366801-132366881 3.01e-03 14_[+3(3.87e-05)]_47_[+1(6.66e-05)]_\ 3 chr19:48845150-48845230 7.43e-01 80 chr15:67134313-67134393 6.32e-01 80 chr16:11707484-11707564 1.60e-01 80 chr7:73923998-73924078 1.04e-01 80 chr11:117973136-11797321 2.27e-01 80 chr11:75524856-75524936 1.06e-01 80 chr19:6772145-6772225 6.96e-03 27_[+2(9.42e-05)]_12_[+2(1.66e-05)]_\ 25 chr15:77926820-77926900 2.75e-03 25_[+2(4.78e-05)]_12_[+2(3.15e-05)]_\ 27 chr17:48347531-48347611 6.37e-03 24_[+2(9.42e-05)]_48 chr17:62733052-62733132 1.98e-01 80 chr19:3146863-3146943 1.78e-01 80 chr5:79552901-79552981 6.33e-01 80 chr19:19170704-19170784 4.05e-03 21_[+1(1.62e-05)]_51 chr10:15482303-15482383 9.77e-03 26_[+2(7.97e-05)]_46 chr11:66246365-66246445 4.94e-02 80 chr9:127085459-127085539 1.32e-03 80 chr22:23407828-23407908 5.10e-02 80 chr7:73735040-73735120 4.76e-03 1_[+2(7.97e-05)]_71 chr11:44555927-44556007 5.06e-03 80 chr9:38040504-38040584 3.19e-03 72_[+2(6.48e-05)] chr7:5421069-5421149 3.33e-02 35_[+3(3.87e-05)]_37 chr3:24614041-24614121 4.26e-01 80 chr6:34496203-34496283 7.65e-04 35_[+2(7.97e-05)]_37 chr19:3321015-3321095 4.24e-02 80 chr16:88588095-88588175 5.09e-01 80 chr11:72999786-72999866 1.37e-02 25_[+2(3.15e-05)]_47 chr19:10686147-10686227 1.35e-02 80 chr19:39826878-39826958 8.44e-01 80 chr8:103743481-103743561 2.24e-02 80 chr17:79474928-79475008 4.89e-01 80 chr11:696506-696586 5.52e-03 80 chr19:13323887-13323967 2.43e-02 80 chr6:36035893-36035973 1.01e-01 80 chr2:24234752-24234832 1.43e-02 80 chr20:48804922-48805002 1.22e-02 67_[+2(3.15e-05)]_5 chr1:206712375-206712455 2.73e-02 24_[+2(7.97e-05)]_48 chr11:64102299-64102379 2.96e-01 80 chr16:29614031-29614111 3.21e-02 30_[+2(3.15e-05)]_42 chr1:25068717-25068797 2.42e-03 17_[+2(3.15e-05)]_55 chr1:67658696-67658776 9.37e-01 80 chr20:48914471-48914551 1.01e-01 80 chr19:55166449-55166529 7.22e-01 80 chr11:74412642-74412722 5.07e-02 24_[+3(3.87e-05)]_48 chr5:157001977-157002057 3.88e-01 80 chr6:37014250-37014330 7.91e-04 80 chr12:121063400-12106348 1.31e-02 17_[+1(3.17e-05)]_55 chr4:2805360-2805440 1.07e-01 80 chr19:1280189-1280269 4.82e-02 80 chr20:817460-817540 7.81e-01 80 chr19:3732237-3732317 3.22e-01 80 chr19:19282729-19282809 1.76e-02 45_[+4(3.38e-05)]_27 chr15:68520969-68521049 8.93e-02 80 chr2:27580246-27580326 1.95e-03 4_[+3(7.65e-05)]_68 chr11:68120177-68120257 6.32e-01 80 chr2:10611286-10611366 2.14e-02 27_[+5(8.47e-05)]_45 chr2:172386553-172386633 5.25e-03 80 chr1:31359729-31359809 5.23e-02 11_[+2(3.15e-05)]_61 chr16:84986092-84986172 3.10e-02 80 chr19:3210724-3210804 1.15e-01 80 chr7:148660716-148660796 8.12e-04 68_[+5(3.43e-05)]_4 chr11:75434294-75434374 1.39e-03 56_[+1(1.62e-05)]_16 chr17:27539361-27539441 8.87e-01 80 chr19:4220434-4220514 6.55e-01 80 chr9:130978567-130978647 1.06e-03 40_[+4(1.73e-05)]_20_[+3(3.87e-05)]_\ 4 chr11:75484903-75484983 2.87e-01 80 chr11:94681281-94681361 1.71e-01 80 chr20:48961201-48961281 5.13e-02 80 chr8:41651817-41651897 2.82e-04 48_[+1(1.62e-05)]_24 chr16:56903420-56903500 2.35e-01 80 chr2:10260138-10260218 1.01e-01 80 chr19:4161590-4161670 3.85e-02 52_[+2(3.15e-05)]_20 chr6:41643829-41643909 1.72e-01 80 chr20:60808915-60808995 6.51e-02 80 chr3:45112682-45112762 1.19e-01 63_[+2(6.48e-05)]_9 chr3:184484637-184484717 3.69e-02 80 chr19:50373568-50373648 3.91e-02 48_[+4(5.03e-05)]_24 chr6:717286-717366 3.50e-02 80 chr19:18393683-18393763 4.35e-03 42_[+1(1.62e-05)]_30 chr19:39218797-39218877 1.19e-01 72_[+3(7.65e-05)] chr6:28777268-28777348 4.96e-02 80 chr9:140795272-140795352 3.98e-02 17_[+4(1.73e-05)]_55 chr3:128586490-128586570 1.18e-02 80 chr6:692450-692530 3.72e-01 80 chr1:36939807-36939887 4.83e-01 80 chr19:44173525-44173605 3.32e-04 16_[+4(1.73e-05)]_20_[+3(3.87e-05)]_\ 28 chr22:26880269-26880349 4.81e-01 80 chr8:103540862-103540942 4.21e-02 8_[+4(1.73e-05)]_6_[+4(1.73e-05)]_6_\ [+4(1.73e-05)]_20_[+4(1.73e-05)]_8 chr19:3059835-3059915 1.25e-01 80 chr11:69212585-69212665 6.37e-04 80 chr7:44690041-44690121 2.67e-02 80 chr6:37605498-37605578 2.68e-01 80 chr16:4992237-4992317 1.13e-02 27_[+3(3.87e-05)]_45 chr9:136029911-136029991 1.49e-01 53_[+2(6.48e-05)]_19 chr15:27379758-27379838 9.02e-02 80 chr6:158430025-158430105 2.32e-03 31_[+1(1.62e-05)]_41 chr20:48842825-48842905 2.11e-01 80 chr11:70079306-70079386 2.14e-02 43_[+5(8.47e-05)]_29 chr1:12249307-12249387 2.44e-03 80 chr11:67594550-67594630 3.78e-02 11_[+4(8.57e-05)]_61 chr19:8315591-8315671 5.40e-01 80 chr19:3484983-3485063 1.45e-02 80 chr10:22658496-22658576 2.50e-02 37_[+4(1.73e-05)]_35 chr1:16474188-16474268 1.26e-02 51_[+2(3.15e-05)]_21 chr16:88332823-88332903 3.89e-01 80 chr6:34093835-34093915 5.26e-01 80 chr12:113767712-11376779 3.65e-03 66_[+1(1.62e-05)]_6 chr12:114101273-11410135 6.42e-04 72_[+5(5.07e-05)] chr1:15323453-15323533 8.82e-02 80 chr3:5044687-5044767 3.66e-04 31_[+4(3.38e-05)]_20_[+3(3.87e-05)]_\ 13 chr19:8213298-8213378 3.85e-01 80 chr19:18156260-18156340 4.98e-02 80 chr1:10969893-10969973 7.35e-02 80 chr1:32215694-32215774 3.30e-01 80 chr1:27834957-27835037 2.69e-02 38_[+4(1.73e-05)]_34 chr1:117236445-117236525 4.85e-05 3_[+2(9.42e-05)]_53_[+4(1.73e-05)]_\ 8 chr19:50047566-50047646 2.55e-01 80 chr10:80883966-80884046 2.98e-02 1_[+3(3.87e-05)]_71 chr19:16251891-16251971 2.92e-03 48_[+1(3.17e-05)]_24 chr1:53603603-53603683 1.55e-01 80 chr5:148809550-148809630 6.98e-01 80 chr1:26186884-26186964 2.72e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************