******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCA4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:113011-113091 1.0000 80 chr5:179364133-179364213 1.0000 80 chr17:42906546-42906626 1.0000 80 chr6:7548218-7548298 1.0000 80 chr7:101397799-101397879 1.0000 80 chr17:46826593-46826673 1.0000 80 chr7:130419640-130419720 1.0000 80 chr21:44909717-44909797 1.0000 80 chr9:110830-110910 1.0000 80 chr1:153377272-153377352 1.0000 80 chr1:43638467-43638547 1.0000 80 chr17:43661172-43661252 1.0000 80 chr17:47755688-47755768 1.0000 80 chr3:56717423-56717503 1.0000 80 chr22:20014842-20014922 1.0000 80 chr3:150481796-150481876 1.0000 80 chr12:4377299-4377379 1.0000 80 chr8:71581624-71581704 1.0000 80 chr17:77776510-77776590 1.0000 80 chr3:32876021-32876101 1.0000 80 chr19:38943540-38943620 1.0000 80 chr7:155414252-155414332 1.0000 80 chr20:34359677-34359757 1.0000 80 chr8:30770564-30770644 1.0000 80 chr10:124714017-12471409 1.0000 80 chr3:127347691-127347771 1.0000 80 chr5:8457411-8457491 1.0000 80 chr12:122711076-12271115 1.0000 80 chr7:12250660-12250740 1.0000 80 chr1:182573668-182573748 1.0000 80 chr19:47746263-47746343 1.0000 80 chr5:96519554-96519634 1.0000 80 chr1:25254633-25254713 1.0000 80 chr18:158212-158292 1.0000 80 chr17:40897169-40897249 1.0000 80 chr2:175202628-175202708 1.0000 80 chr6:10348132-10348212 1.0000 80 chr9:37079426-37079506 1.0000 80 chr19:9186440-9186520 1.0000 80 chr5:34924215-34924295 1.0000 80 chr6:30434162-30434242 1.0000 80 chr16:21531953-21532033 1.0000 80 chr21:38361873-38361953 1.0000 80 chr5:176794503-176794583 1.0000 80 chr16:82204023-82204103 1.0000 80 chr16:87903296-87903376 1.0000 80 chr11:93394598-93394678 1.0000 80 chrX:47518796-47518876 1.0000 80 chr1:151964885-151964965 1.0000 80 chr3:10289877-10289957 1.0000 80 chr7:142985112-142985192 1.0000 80 chr16:66586549-66586629 1.0000 80 chr20:49092631-49092711 1.0000 80 chr22:20004621-20004701 1.0000 80 chr7:100025812-100025892 1.0000 80 chr2:114261802-114261882 1.0000 80 chr16:29625239-29625319 1.0000 80 chr3:148898043-148898123 1.0000 80 chr5:154062563-154062643 1.0000 80 chr6:13874153-13874233 1.0000 80 chr19:56015117-56015197 1.0000 80 chr19:49631140-49631220 1.0000 80 chr9:128508568-128508648 1.0000 80 chr1:36023586-36023666 1.0000 80 chr1:12123358-12123438 1.0000 80 chr11:107436855-10743693 1.0000 80 chr2:219433223-219433303 1.0000 80 chr10:103986136-10398621 1.0000 80 chr20:247416-247496 1.0000 80 chr3:45709703-45709783 1.0000 80 chr1:32816664-32816744 1.0000 80 chr7:123178413-123178493 1.0000 80 chr5:112378684-112378764 1.0000 80 chr11:67250770-67250850 1.0000 80 chr16:23834890-23834970 1.0000 80 chr17:42906747-42906827 1.0000 80 chr3:148804483-148804563 1.0000 80 chr18:19747825-19747905 1.0000 80 chr19:56151567-56151647 1.0000 80 chr9:99983984-99984064 1.0000 80 chr1:93250955-93251035 1.0000 80 chr6:11144062-11144142 1.0000 80 chr9:95571453-95571533 1.0000 80 chr17:40950861-40950941 1.0000 80 chr7:2393622-2393702 1.0000 80 chr7:155082874-155082954 1.0000 80 chr6:35311367-35311447 1.0000 80 chr7:148400637-148400717 1.0000 80 chr2:239147740-239147820 1.0000 80 chr7:130419843-130419923 1.0000 80 chr19:50837234-50837314 1.0000 80 chr19:14016787-14016867 1.0000 80 chr16:29984714-29984794 1.0000 80 chr20:34189467-34189547 1.0000 80 chr2:74757755-74757835 1.0000 80 chr5:70681225-70681305 1.0000 80 chr6:20458750-20458830 1.0000 80 chr7:101398012-101398092 1.0000 80 chr4:84405856-84405936 1.0000 80 chr1:44992545-44992625 1.0000 80 chr11:59570260-59570340 1.0000 80 chrX:14083178-14083258 1.0000 80 chr5:179499248-179499328 1.0000 80 chr7:23636842-23636922 1.0000 80 chr19:13029930-13030010 1.0000 80 chr1:92446379-92446459 1.0000 80 chr11:60681671-60681751 1.0000 80 chr12:104198892-10419897 1.0000 80 chr2:75185554-75185634 1.0000 80 chr19:55987542-55987622 1.0000 80 chr6:161223153-161223233 1.0000 80 chr1:151762851-151762931 1.0000 80 chr7:1687902-1687982 1.0000 80 chr4:39368011-39368091 1.0000 80 chr5:37672388-37672468 1.0000 80 chr19:46094346-46094426 1.0000 80 chr7:26890132-26890212 1.0000 80 chr19:49925965-49926045 1.0000 80 chr19:44144264-44144344 1.0000 80 chr6:159460773-159460853 1.0000 80 chr17:46048718-46048798 1.0000 80 chr7:29686807-29686887 1.0000 80 chr17:55063217-55063297 1.0000 80 chr6:42472577-42472657 1.0000 80 chr7:151217323-151217403 1.0000 80 chr7:106675991-106676071 1.0000 80 chr1:247241910-247241990 1.0000 80 chr7:100797427-100797507 1.0000 80 chr1:28051994-28052074 1.0000 80 chr8:102166203-102166283 1.0000 80 chr15:83315974-83316054 1.0000 80 chr1:53079862-53079942 1.0000 80 chr1:145109501-145109581 1.0000 80 chr17:21454515-21454595 1.0000 80 chr5:122199092-122199172 1.0000 80 chr5:74862812-74862892 1.0000 80 chr6:3912251-3912331 1.0000 80 chr10:5726427-5726507 1.0000 80 chr5:43042791-43042871 1.0000 80 chr22:19157127-19157207 1.0000 80 chr6:114292645-114292725 1.0000 80 chr6:47277557-47277637 1.0000 80 chr8:29107600-29107680 1.0000 80 chr2:176997111-176997191 1.0000 80 chr3:33984135-33984215 1.0000 80 chr13:52733822-52733902 1.0000 80 chr22:40022316-40022396 1.0000 80 chr15:41523011-41523091 1.0000 80 chr1:154909021-154909101 1.0000 80 chr15:70390099-70390179 1.0000 80 chr6:26026018-26026098 1.0000 80 chr6:35993466-35993546 1.0000 80 chr15:69139366-69139446 1.0000 80 chr1:229406629-229406709 1.0000 80 chr15:69136058-69136138 1.0000 80 chr2:11605920-11606000 1.0000 80 chr17:35306028-35306108 1.0000 80 chr11:66326689-66326769 1.0000 80 chr18:12948544-12948624 1.0000 80 chr12:46662639-46662719 1.0000 80 chr9:37769484-37769564 1.0000 80 chr1:10571151-10571231 1.0000 80 chr17:34838826-34838906 1.0000 80 chr3:45634873-45634953 1.0000 80 chr8:67018078-67018158 1.0000 80 chr5:132576333-132576413 1.0000 80 chr10:99496651-99496731 1.0000 80 chr7:100488033-100488113 1.0000 80 chr12:112811428-11281150 1.0000 80 chr1:120195901-120195981 1.0000 80 chr10:7070347-7070427 1.0000 80 chr9:123837039-123837119 1.0000 80 chr5:75668598-75668678 1.0000 80 chr22:21910421-21910501 1.0000 80 chr15:35849834-35849914 1.0000 80 chr2:191136658-191136738 1.0000 80 chrX:129402975-129403055 1.0000 80 chr1:184942780-184942860 1.0000 80 chr6:6886784-6886864 1.0000 80 chr15:34908939-34909019 1.0000 80 chr19:17953278-17953358 1.0000 80 chr16:70470031-70470111 1.0000 80 chrX:133682384-133682464 1.0000 80 chr16:58010485-58010565 1.0000 80 chr19:6425619-6425699 1.0000 80 chr7:72722898-72722978 1.0000 80 chr8:130587043-130587123 1.0000 80 chr17:62919217-62919297 1.0000 80 chr20:61493516-61493596 1.0000 80 chr20:48598936-48599016 1.0000 80 chr8:37949387-37949467 1.0000 80 chr11:66726261-66726341 1.0000 80 chr19:50393383-50393463 1.0000 80 chr22:43253496-43253576 1.0000 80 chr5:153121750-153121830 1.0000 80 chr7:88319305-88319385 1.0000 80 chr20:48715000-48715080 1.0000 80 chr1:249183789-249183869 1.0000 80 chr2:38591494-38591574 1.0000 80 chr8:98788659-98788739 1.0000 80 chr4:187766511-187766591 1.0000 80 chr17:45784200-45784280 1.0000 80 chr22:41107701-41107781 1.0000 80 chr9:117373371-117373451 1.0000 80 chr7:86740257-86740337 1.0000 80 chr2:30670640-30670720 1.0000 80 chr11:121128169-12112824 1.0000 80 chr3:135915518-135915598 1.0000 80 chr19:50529328-50529408 1.0000 80 chr19:35800864-35800944 1.0000 80 chr3:196758477-196758557 1.0000 80 chr2:65233753-65233833 1.0000 80 chr16:30064287-30064367 1.0000 80 chr20:33301348-33301428 1.0000 80 chr17:42015597-42015677 1.0000 80 chr21:38827798-38827878 1.0000 80 chr1:38989332-38989412 1.0000 80 chr12:125389427-12538950 1.0000 80 chr1:39851441-39851521 1.0000 80 chr1:35745007-35745087 1.0000 80 chr21:38729207-38729287 1.0000 80 chr8:74284055-74284135 1.0000 80 chr1:61736948-61737028 1.0000 80 chr5:124082059-124082139 1.0000 80 chr1:39583039-39583119 1.0000 80 chr2:242766062-242766142 1.0000 80 chr8:67978658-67978738 1.0000 80 chr14:34513206-34513286 1.0000 80 chr2:64479902-64479982 1.0000 80 chr19:14561135-14561215 1.0000 80 chr9:37120047-37120127 1.0000 80 chr8:126676807-126676887 1.0000 80 chr20:57596207-57596287 1.0000 80 chr6:91078876-91078956 1.0000 80 chr9:111896523-111896603 1.0000 80 chr6:27741807-27741887 1.0000 80 chr5:112196711-112196791 1.0000 80 chr7:92439167-92439247 1.0000 80 chr3:38388148-38388228 1.0000 80 chr21:45342082-45342162 1.0000 80 chr12:65563122-65563202 1.0000 80 chr6:28584228-28584308 1.0000 80 chr6:130173546-130173626 1.0000 80 chr11:72032847-72032927 1.0000 80 chr6:108899888-108899968 1.0000 80 chr11:35684813-35684893 1.0000 80 chr16:30597067-30597147 1.0000 80 chr2:169990950-169991030 1.0000 80 chr1:51986196-51986276 1.0000 80 chr10:29421092-29421172 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SMARCA4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMARCA4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.232 C 0.276 G 0.273 T 0.219 Background letter frequencies (from file dataset with add-one prior applied): A 0.232 C 0.276 G 0.273 T 0.219 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGASTCAY MEME-1 width = 8 sites = 45 llr = 408 E-value = 2.4e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a1::a: pos.-specific C :::4:a:3 probability G :a:4:::1 matrix T a::1a::6 bits 2.2 * * * * 2.0 *** * * 1.8 *** * * 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (13.1 bits) 0.9 *** *** 0.7 *** **** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel TGACTCAT consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:108899888-108899968 34 1.18e-05 GTAGTTGCAC TGACTCAT CCCCAGACAG chr11:72032847-72032927 59 1.18e-05 ACTCAGATGG TGACTCAT ATCACAGTCG chr6:91078876-91078956 21 1.18e-05 CTCAAGGTGG TGACTCAT TCAGCAACTA chr20:33301348-33301428 63 1.18e-05 CAATGGGGTC TGACTCAT AAATGACTAC chr3:196758477-196758557 70 1.18e-05 CATTCAGCTG TGACTCAT CAG chr5:75668598-75668678 14 1.18e-05 GTCATTAGGA TGACTCAT CATTTTTCTA chr5:132576333-132576413 50 1.18e-05 TCTTCGCGCA TGACTCAT CTCTTTGTGC chr8:67018078-67018158 48 1.18e-05 aagggcagtc tgactcat aaacccaatg chr1:44992545-44992625 44 1.18e-05 ttagcttctc tgactcat ctctttggat chr7:155082874-155082954 46 1.18e-05 cactcaagca tgactcat ccaaggcctc chr5:34924215-34924295 19 1.18e-05 AGTCACACAG TGACTCAT TCAGGAGAAA chr6:10348132-10348212 21 1.18e-05 AATCTCTCTG TGACTCAT TCGATGAGGA chr7:92439167-92439247 27 2.34e-05 CAGGAAGTGC TGAGTCAT CGTGAGCATA chr21:38827798-38827878 29 2.34e-05 TTGGAACCGC TGAGTCAT TCTTGAATCC chr22:41107701-41107781 6 2.34e-05 agaca tgagtcat cgagaggcta chr7:106675991-106676071 55 2.34e-05 gtcaggaaga tgagtcat attcagtaaa chr7:26890132-26890212 16 2.34e-05 gaggctgcag tgagtcat gatcacacca chr11:107436855-10743693 17 2.34e-05 gtcatccctc tgagtcat ccctctgctc chr1:12123358-12123438 3 2.34e-05 CC TGAGTCAT CTCTGCACGT chr1:61736948-61737028 21 3.82e-05 ATAAGGCAGT TGACTCAC TCTTCAACTT chr2:65233753-65233833 50 3.82e-05 ccaggcatgg tgactcac gcttgtaatc chr16:70470031-70470111 30 3.82e-05 ccaggagcgg tgactcac gcctgtaatc chr1:10571151-10571231 49 3.82e-05 GGAACCCAGA TGACTCAC CATTCTATTT chr6:26026018-26026098 39 3.82e-05 tatctgctga tgactcac acatttttat chr8:29107600-29107680 47 3.82e-05 AAATCTACTG TGACTCAC CACCCACCAC chr8:126676807-126676887 21 5.29e-05 TGGTGTCCGC TGAGTCAC CTGTGTCATT chr1:39583039-39583119 55 5.29e-05 AAACTTGCCA TGAGTCAC ACTGGGGAGT chr1:35745007-35745087 40 5.29e-05 atgggatcca tgagtcac actgctagta chr7:86740257-86740337 38 5.29e-05 TACACAGAAG TGAGTCAC CACAGCACGA chr15:35849834-35849914 16 5.29e-05 GTGAAGAAGA TGAGTCAC AAATTGTAAT chr22:21910421-21910501 53 5.29e-05 gagccatgag tgagtcac cgcactcctg chr6:3912251-3912331 65 5.29e-05 CAGGCACTAG TGAGTCAC TTTTTGAG chrX:14083178-14083258 22 5.29e-05 TAACCCAAGA TGAGTCAC ACCACTCCCT chr10:29421092-29421172 28 6.27e-05 CTGCTTCCTC TGAATCAT GAAAACAAAC chr15:69139366-69139446 53 6.27e-05 catgattatt tgaatcat gcagattatt chr6:130173546-130173626 35 7.21e-05 acaggaagta tgattcat ctttatCATT chr3:45709703-45709783 32 7.21e-05 GGGAAGTGGC TGATTCAT CTTACCAGTC chr17:77776510-77776590 20 7.21e-05 GAGGCAGTTT TGATTCAT TCCTTGGGCA chr2:64479902-64479982 40 8.67e-05 ctctcttttc tgactcag cccgcctgca chr16:58010485-58010565 55 1.01e-04 CTGCTATTGG TGAGTCAG AAGCAGGGAG chr15:34908939-34909019 73 1.01e-04 GCAGTGTAAA TGAGTCAG chr5:74862812-74862892 40 1.35e-04 CAGACAAGGG TGACTAAT GAGAGATAGT chr9:111896523-111896603 18 1.45e-04 gctacaatga tgagtaat ggtctctgca chr5:112378684-112378764 47 1.57e-04 cagaGCTAGA TGAATCAG CATCTGTTTC chr17:43661172-43661252 62 1.57e-04 AAAACAATTT TGAATCAG ATGAATTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:108899888-108899968 1.2e-05 33_[+1]_39 chr11:72032847-72032927 1.2e-05 58_[+1]_14 chr6:91078876-91078956 1.2e-05 20_[+1]_52 chr20:33301348-33301428 1.2e-05 62_[+1]_10 chr3:196758477-196758557 1.2e-05 69_[+1]_3 chr5:75668598-75668678 1.2e-05 13_[+1]_59 chr5:132576333-132576413 1.2e-05 49_[+1]_23 chr8:67018078-67018158 1.2e-05 47_[+1]_25 chr1:44992545-44992625 1.2e-05 43_[+1]_29 chr7:155082874-155082954 1.2e-05 45_[+1]_27 chr5:34924215-34924295 1.2e-05 18_[+1]_54 chr6:10348132-10348212 1.2e-05 20_[+1]_52 chr7:92439167-92439247 2.3e-05 26_[+1]_46 chr21:38827798-38827878 2.3e-05 28_[+1]_44 chr22:41107701-41107781 2.3e-05 5_[+1]_67 chr7:106675991-106676071 2.3e-05 54_[+1]_18 chr7:26890132-26890212 2.3e-05 15_[+1]_57 chr11:107436855-10743693 2.3e-05 16_[+1]_56 chr1:12123358-12123438 2.3e-05 2_[+1]_70 chr1:61736948-61737028 3.8e-05 20_[+1]_52 chr2:65233753-65233833 3.8e-05 49_[+1]_23 chr16:70470031-70470111 3.8e-05 29_[+1]_43 chr1:10571151-10571231 3.8e-05 48_[+1]_24 chr6:26026018-26026098 3.8e-05 38_[+1]_34 chr8:29107600-29107680 3.8e-05 46_[+1]_26 chr8:126676807-126676887 5.3e-05 20_[+1]_52 chr1:39583039-39583119 5.3e-05 54_[+1]_18 chr1:35745007-35745087 5.3e-05 39_[+1]_33 chr7:86740257-86740337 5.3e-05 37_[+1]_35 chr15:35849834-35849914 5.3e-05 15_[+1]_57 chr22:21910421-21910501 5.3e-05 52_[+1]_20 chr6:3912251-3912331 5.3e-05 64_[+1]_8 chrX:14083178-14083258 5.3e-05 21_[+1]_51 chr10:29421092-29421172 6.3e-05 27_[+1]_45 chr15:69139366-69139446 6.3e-05 52_[+1]_20 chr6:130173546-130173626 7.2e-05 34_[+1]_38 chr3:45709703-45709783 7.2e-05 31_[+1]_41 chr17:77776510-77776590 7.2e-05 19_[+1]_53 chr2:64479902-64479982 8.7e-05 39_[+1]_33 chr16:58010485-58010565 0.0001 54_[+1]_18 chr15:34908939-34909019 0.0001 72_[+1] chr5:74862812-74862892 0.00014 39_[+1]_33 chr9:111896523-111896603 0.00015 17_[+1]_55 chr5:112378684-112378764 0.00016 46_[+1]_26 chr17:43661172-43661252 0.00016 61_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAY width=8 seqs=45 chr6:108899888-108899968 ( 34) TGACTCAT 1 chr11:72032847-72032927 ( 59) TGACTCAT 1 chr6:91078876-91078956 ( 21) TGACTCAT 1 chr20:33301348-33301428 ( 63) TGACTCAT 1 chr3:196758477-196758557 ( 70) TGACTCAT 1 chr5:75668598-75668678 ( 14) TGACTCAT 1 chr5:132576333-132576413 ( 50) TGACTCAT 1 chr8:67018078-67018158 ( 48) TGACTCAT 1 chr1:44992545-44992625 ( 44) TGACTCAT 1 chr7:155082874-155082954 ( 46) TGACTCAT 1 chr5:34924215-34924295 ( 19) TGACTCAT 1 chr6:10348132-10348212 ( 21) TGACTCAT 1 chr7:92439167-92439247 ( 27) TGAGTCAT 1 chr21:38827798-38827878 ( 29) TGAGTCAT 1 chr22:41107701-41107781 ( 6) TGAGTCAT 1 chr7:106675991-106676071 ( 55) TGAGTCAT 1 chr7:26890132-26890212 ( 16) TGAGTCAT 1 chr11:107436855-10743693 ( 17) TGAGTCAT 1 chr1:12123358-12123438 ( 3) TGAGTCAT 1 chr1:61736948-61737028 ( 21) TGACTCAC 1 chr2:65233753-65233833 ( 50) TGACTCAC 1 chr16:70470031-70470111 ( 30) TGACTCAC 1 chr1:10571151-10571231 ( 49) TGACTCAC 1 chr6:26026018-26026098 ( 39) TGACTCAC 1 chr8:29107600-29107680 ( 47) TGACTCAC 1 chr8:126676807-126676887 ( 21) TGAGTCAC 1 chr1:39583039-39583119 ( 55) TGAGTCAC 1 chr1:35745007-35745087 ( 40) TGAGTCAC 1 chr7:86740257-86740337 ( 38) TGAGTCAC 1 chr15:35849834-35849914 ( 16) TGAGTCAC 1 chr22:21910421-21910501 ( 53) TGAGTCAC 1 chr6:3912251-3912331 ( 65) TGAGTCAC 1 chrX:14083178-14083258 ( 22) TGAGTCAC 1 chr10:29421092-29421172 ( 28) TGAATCAT 1 chr15:69139366-69139446 ( 53) TGAATCAT 1 chr6:130173546-130173626 ( 35) TGATTCAT 1 chr3:45709703-45709783 ( 32) TGATTCAT 1 chr17:77776510-77776590 ( 20) TGATTCAT 1 chr2:64479902-64479982 ( 40) TGACTCAG 1 chr16:58010485-58010565 ( 55) TGAGTCAG 1 chr15:34908939-34909019 ( 73) TGAGTCAG 1 chr5:74862812-74862892 ( 40) TGACTAAT 1 chr9:111896523-111896603 ( 18) TGAGTAAT 1 chr5:112378684-112378764 ( 47) TGAATCAG 1 chr17:43661172-43661252 ( 62) TGAATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 2.4e-027 -1214 -1214 -1214 219 -1214 -1214 187 -1214 211 -1214 -1214 -1214 -139 69 55 -171 -1214 -1214 -1214 219 -238 179 -1214 -1214 211 -1214 -1214 -1214 -1214 17 -130 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 2.4e-027 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.088889 0.444444 0.400000 0.066667 0.000000 0.000000 0.000000 1.000000 0.044444 0.955556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.311111 0.111111 0.577778 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 regular expression -------------------------------------------------------------------------------- TGA[CG]TCA[TC] -------------------------------------------------------------------------------- Time 4.96 secs. ******************************************************************************** ******************************************************************************** MOTIF RSCACGTG MEME-2 width = 8 sites = 43 llr = 348 E-value = 9.6e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSCACGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::a::2: pos.-specific C 15a:8::: probability G 35:::a:a matrix T 1:::2:8: bits 2.2 * 2.0 * * * 1.8 ** * * 1.5 ** *** Relative 1.3 ****** Entropy 1.1 ****** (11.7 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AGCACGTG consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:98788659-98788739 22 1.83e-05 TTATCTGCCG AGCACGTG TTTCCTTTCT chr10:99496651-99496731 49 1.83e-05 AGGGTCGCCA AGCACGTG CTTCCAAGGG chr17:46048718-46048798 17 1.83e-05 CAGGACCATC AGCACGTG CCCATCGACA chr19:46094346-46094426 51 1.83e-05 GGACAGCAAG AGCACGTG ATAGGGCGCA chr19:55987542-55987622 45 1.83e-05 GAAAATCCTG AGCACGTG GCTCTACCGA chr7:23636842-23636922 64 1.83e-05 GGCGGCTGGA AGCACGTG CCGCCGCTT chr7:101398012-101398092 14 1.83e-05 TATCACATTT AGCACGTG TAAAGGAATT chr12:122711076-12271115 7 1.83e-05 AGCTGC AGCACGTG GACGGTGGAC chr2:30670640-30670720 53 3.67e-05 TCAAGTGGTC ACCACGTG CGGGGCTTCG chr19:50393383-50393463 47 3.67e-05 GCCGCGTCCG ACCACGTG TACGAGGCCA chr7:100488033-100488113 48 3.67e-05 AATGCAGGCG ACCACGTG GGACGGTGGC chr6:114292645-114292725 41 3.67e-05 GCCCAAGCCG ACCACGTG CCGCGAGCCC chr10:5726427-5726507 41 3.67e-05 CCCGAAGGCG ACCACGTG GGCCACAGCC chr19:6425619-6425699 20 5.82e-05 GGGTAGGCCC GGCACGTG GCCCGCTTGA chr6:6886784-6886864 57 5.82e-05 CCACGCCAGG GGCACGTG CACGTTTTAG chr3:45634873-45634953 22 5.82e-05 AGCCTACTAG GGCACGTG CTTTTACTGC chr20:34189467-34189547 22 5.82e-05 CCTCAGGTCC GGCACGTG CGTAGCGAGT chr2:239147740-239147820 60 5.82e-05 TCGATGGCCT GGCACGTG GACACGAACG chr20:48598936-48599016 47 8.00e-05 GCCGCCGAGA GCCACGTG CGGTGTCCCT chr15:83315974-83316054 39 8.00e-05 AAGGTGTGAA GCCACGTG ACCTGCCCAG chr17:77776510-77776590 52 8.00e-05 GACCGGTTGG GCCACGTG GGCTCGCTGG chr11:60681671-60681751 38 1.16e-04 TCAGCGAAGT CGCACGTG AAGGATAGCA chr22:20014842-20014922 33 1.16e-04 CCATGTGCAG AGCATGTG CTAGGGATGG chr12:125389427-12538950 24 1.53e-04 AGACCACTGT CCCACGTG CTTGCAGGGA chr5:43042791-43042871 65 1.53e-04 GAAGAAGTTG CCCACGTG GCGGTGGG chr19:14016787-14016867 13 1.53e-04 AGGCCGAGAG CCCACGTG AAGCCGGAGC chr3:148898043-148898123 10 1.53e-04 TTCTATCAC ACCATGTG CTGTTTTGTC chr1:43638467-43638547 4 1.53e-04 GAT CCCACGTG GCCAACAATA chr7:1687902-1687982 51 1.72e-04 TGGGACGTGA AGCACGAG GTTTCTAGTC chr19:38943540-38943620 50 1.72e-04 GAGGACTTGC AGCACGAG GAGAAGCAGA chr3:135915518-135915598 13 1.89e-04 CCCTCTCCCA GGCATGTG GGCTGTGGTG chr20:49092631-49092711 4 1.89e-04 CAA GGCATGTG CCACATCCTT chr16:30597067-30597147 28 2.26e-04 GCCTTTACAC ACCACGAG GGAAACCAGC chr1:39851441-39851521 26 2.26e-04 GAGCAGTTAG ACCACGAG GTTAAGGAGG chr8:130587043-130587123 11 2.26e-04 ctctctcacg tgcacgtg cacgctccct chr1:12123358-12123438 14 2.26e-04 GAGTCATCTC TGCACGTG TTTGCCCCCT chr8:30770564-30770644 19 2.26e-04 CCAGAGGCCC TGCACGTG GAAGCTCGAA chr4:187766511-187766591 36 2.43e-04 TGATGTCCCT GCCATGTG TCCCACACAG chr11:59570260-59570340 17 2.43e-04 ACCTTTTTAA GCCATGTG CTGGATCAGA chr7:100025812-100025892 70 2.84e-04 ACCAAGAAAA GGCACGAG GAC chr3:148804483-148804563 32 3.07e-04 GCGCGGGAAA GCCACGAG GCCCCAGGAG chr5:176794503-176794583 44 3.07e-04 CAGCCCTGAC GCCACGAG GAAGGTGCGT chr2:74757755-74757835 72 3.41e-04 GTCACCAACG CCCATGTG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:98788659-98788739 1.8e-05 21_[+2]_51 chr10:99496651-99496731 1.8e-05 48_[+2]_24 chr17:46048718-46048798 1.8e-05 16_[+2]_56 chr19:46094346-46094426 1.8e-05 50_[+2]_22 chr19:55987542-55987622 1.8e-05 44_[+2]_28 chr7:23636842-23636922 1.8e-05 63_[+2]_9 chr7:101398012-101398092 1.8e-05 13_[+2]_59 chr12:122711076-12271115 1.8e-05 6_[+2]_66 chr2:30670640-30670720 3.7e-05 52_[+2]_20 chr19:50393383-50393463 3.7e-05 46_[+2]_26 chr7:100488033-100488113 3.7e-05 47_[+2]_25 chr6:114292645-114292725 3.7e-05 40_[+2]_32 chr10:5726427-5726507 3.7e-05 40_[+2]_32 chr19:6425619-6425699 5.8e-05 19_[+2]_53 chr6:6886784-6886864 5.8e-05 56_[+2]_16 chr3:45634873-45634953 5.8e-05 21_[+2]_51 chr20:34189467-34189547 5.8e-05 21_[+2]_51 chr2:239147740-239147820 5.8e-05 59_[+2]_13 chr20:48598936-48599016 8e-05 46_[+2]_26 chr15:83315974-83316054 8e-05 38_[+2]_34 chr17:77776510-77776590 8e-05 51_[+2]_21 chr11:60681671-60681751 0.00012 37_[+2]_35 chr22:20014842-20014922 0.00012 32_[+2]_40 chr12:125389427-12538950 0.00015 23_[+2]_49 chr5:43042791-43042871 0.00015 64_[+2]_8 chr19:14016787-14016867 0.00015 12_[+2]_60 chr3:148898043-148898123 0.00015 9_[+2]_63 chr1:43638467-43638547 0.00015 3_[+2]_69 chr7:1687902-1687982 0.00017 50_[+2]_22 chr19:38943540-38943620 0.00017 49_[+2]_23 chr3:135915518-135915598 0.00019 12_[+2]_60 chr20:49092631-49092711 0.00019 3_[+2]_69 chr16:30597067-30597147 0.00023 27_[+2]_45 chr1:39851441-39851521 0.00023 25_[+2]_47 chr8:130587043-130587123 0.00023 10_[+2]_62 chr1:12123358-12123438 0.00023 13_[+2]_59 chr8:30770564-30770644 0.00023 18_[+2]_54 chr4:187766511-187766591 0.00024 35_[+2]_37 chr11:59570260-59570340 0.00024 16_[+2]_56 chr7:100025812-100025892 0.00028 69_[+2]_3 chr3:148804483-148804563 0.00031 31_[+2]_41 chr5:176794503-176794583 0.00031 43_[+2]_29 chr2:74757755-74757835 0.00034 71_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSCACGTG width=8 seqs=43 chr8:98788659-98788739 ( 22) AGCACGTG 1 chr10:99496651-99496731 ( 49) AGCACGTG 1 chr17:46048718-46048798 ( 17) AGCACGTG 1 chr19:46094346-46094426 ( 51) AGCACGTG 1 chr19:55987542-55987622 ( 45) AGCACGTG 1 chr7:23636842-23636922 ( 64) AGCACGTG 1 chr7:101398012-101398092 ( 14) AGCACGTG 1 chr12:122711076-12271115 ( 7) AGCACGTG 1 chr2:30670640-30670720 ( 53) ACCACGTG 1 chr19:50393383-50393463 ( 47) ACCACGTG 1 chr7:100488033-100488113 ( 48) ACCACGTG 1 chr6:114292645-114292725 ( 41) ACCACGTG 1 chr10:5726427-5726507 ( 41) ACCACGTG 1 chr19:6425619-6425699 ( 20) GGCACGTG 1 chr6:6886784-6886864 ( 57) GGCACGTG 1 chr3:45634873-45634953 ( 22) GGCACGTG 1 chr20:34189467-34189547 ( 22) GGCACGTG 1 chr2:239147740-239147820 ( 60) GGCACGTG 1 chr20:48598936-48599016 ( 47) GCCACGTG 1 chr15:83315974-83316054 ( 39) GCCACGTG 1 chr17:77776510-77776590 ( 52) GCCACGTG 1 chr11:60681671-60681751 ( 38) CGCACGTG 1 chr22:20014842-20014922 ( 33) AGCATGTG 1 chr12:125389427-12538950 ( 24) CCCACGTG 1 chr5:43042791-43042871 ( 65) CCCACGTG 1 chr19:14016787-14016867 ( 13) CCCACGTG 1 chr3:148898043-148898123 ( 10) ACCATGTG 1 chr1:43638467-43638547 ( 4) CCCACGTG 1 chr7:1687902-1687982 ( 51) AGCACGAG 1 chr19:38943540-38943620 ( 50) AGCACGAG 1 chr3:135915518-135915598 ( 13) GGCATGTG 1 chr20:49092631-49092711 ( 4) GGCATGTG 1 chr16:30597067-30597147 ( 28) ACCACGAG 1 chr1:39851441-39851521 ( 26) ACCACGAG 1 chr8:130587043-130587123 ( 11) TGCACGTG 1 chr1:12123358-12123438 ( 14) TGCACGTG 1 chr8:30770564-30770644 ( 19) TGCACGTG 1 chr4:187766511-187766591 ( 36) GCCATGTG 1 chr11:59570260-59570340 ( 17) GCCATGTG 1 chr7:100025812-100025892 ( 70) GGCACGAG 1 chr3:148804483-148804563 ( 32) GCCACGAG 1 chr5:176794503-176794583 ( 44) GCCACGAG 1 chr2:74757755-74757835 ( 72) CCCATGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 9.6e-006 93 -98 35 -165 -1207 75 97 -1207 -1207 186 -1207 -1207 211 -1207 -1207 -1207 -1207 160 -1207 -43 -1207 -1207 187 -1207 -51 -1207 -1207 194 -1207 -1207 187 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 9.6e-006 0.441860 0.139535 0.348837 0.069767 0.000000 0.465116 0.534884 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.837209 0.000000 0.162791 0.000000 0.000000 1.000000 0.000000 0.162791 0.000000 0.000000 0.837209 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-2 regular expression -------------------------------------------------------------------------------- [AG][GC]CACGTG -------------------------------------------------------------------------------- Time 8.77 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATAAGV MEME-3 width = 8 sites = 21 llr = 197 E-value = 1.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAAGV MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:aa23 pos.-specific C :::::::4 probability G :a::::73 matrix T :::a::1: bits 2.2 * **** 2.0 ****** 1.8 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (13.6 bits) 0.9 ****** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATAAGC consensus G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:33301348-33301428 25 1.31e-05 GGAAGAGGGG AGATAAGC TTACTGGGAA chr22:41107701-41107781 33 1.31e-05 atctaaaccg agataagc tgcagtgcag chr6:20458750-20458830 15 1.31e-05 TGGACCTTGG AGATAAGC TTCTATTCTT chr20:247416-247496 68 1.31e-05 accgggcggg agataagc ttggc chr1:249183789-249183869 38 3.69e-05 agtaaaacac agataagg cagctcgggg chr7:88319305-88319385 65 3.69e-05 ggagaatgaa agataaga atcgtaga chr5:153121750-153121830 49 3.69e-05 tggggaagCA AGATAAGA AGAAGGTAGG chr8:37949387-37949467 53 3.69e-05 tggtgagtac agataagg cttgctgagc chr16:58010485-58010565 34 3.69e-05 TGGGCCCTAC AGATAAGG TAGCTGCTAT chr8:67018078-67018158 34 3.69e-05 gcagcttcac agataagg gcagtctgac chr6:35993466-35993546 59 3.69e-05 ATGTTTTTGT AGATAAGA GAATTCCAGC chr22:40022316-40022396 35 3.69e-05 TGCTGCTGCT AGATAAGG TGCTGGGAGT chr3:33984135-33984215 64 3.69e-05 TGGTGCGATT AGATAAGA GATGAGTCA chr5:122199092-122199172 18 3.69e-05 gagtgataag agataagg tcatatatag chr11:72032847-72032927 11 4.80e-05 TGCTACTCAT AGATAAAC TCGGGTATGC chr1:39583039-39583119 41 4.80e-05 GACTCTTATC AGATAAAC TTGCCATGAG chr2:38591494-38591574 30 4.80e-05 TGTGTTGCAG AGATAAAC TCAAAGTGAT chr7:130419640-130419720 65 4.80e-05 TCTAGCGGCG AGATAAAC ACATTAAA chr20:57596207-57596287 38 9.79e-05 TGAAGCTGGA AGATAATA CGGAAAGGGG chr20:48715000-48715080 2 9.79e-05 a agataata cccgtttgga chr7:1687902-1687982 35 9.79e-05 TTAGCATGGG AGATAATG GGACGTGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:33301348-33301428 1.3e-05 24_[+3]_48 chr22:41107701-41107781 1.3e-05 32_[+3]_40 chr6:20458750-20458830 1.3e-05 14_[+3]_58 chr20:247416-247496 1.3e-05 67_[+3]_5 chr1:249183789-249183869 3.7e-05 37_[+3]_35 chr7:88319305-88319385 3.7e-05 64_[+3]_8 chr5:153121750-153121830 3.7e-05 48_[+3]_24 chr8:37949387-37949467 3.7e-05 52_[+3]_20 chr16:58010485-58010565 3.7e-05 33_[+3]_39 chr8:67018078-67018158 3.7e-05 33_[+3]_39 chr6:35993466-35993546 3.7e-05 58_[+3]_14 chr22:40022316-40022396 3.7e-05 34_[+3]_38 chr3:33984135-33984215 3.7e-05 63_[+3]_9 chr5:122199092-122199172 3.7e-05 17_[+3]_55 chr11:72032847-72032927 4.8e-05 10_[+3]_62 chr1:39583039-39583119 4.8e-05 40_[+3]_32 chr2:38591494-38591574 4.8e-05 29_[+3]_43 chr7:130419640-130419720 4.8e-05 64_[+3]_8 chr20:57596207-57596287 9.8e-05 37_[+3]_35 chr20:48715000-48715080 9.8e-05 1_[+3]_71 chr7:1687902-1687982 9.8e-05 34_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAAGV width=8 seqs=21 chr20:33301348-33301428 ( 25) AGATAAGC 1 chr22:41107701-41107781 ( 33) AGATAAGC 1 chr6:20458750-20458830 ( 15) AGATAAGC 1 chr20:247416-247496 ( 68) AGATAAGC 1 chr1:249183789-249183869 ( 38) AGATAAGG 1 chr7:88319305-88319385 ( 65) AGATAAGA 1 chr5:153121750-153121830 ( 49) AGATAAGA 1 chr8:37949387-37949467 ( 53) AGATAAGG 1 chr16:58010485-58010565 ( 34) AGATAAGG 1 chr8:67018078-67018158 ( 34) AGATAAGG 1 chr6:35993466-35993546 ( 59) AGATAAGA 1 chr22:40022316-40022396 ( 35) AGATAAGG 1 chr3:33984135-33984215 ( 64) AGATAAGA 1 chr5:122199092-122199172 ( 18) AGATAAGG 1 chr11:72032847-72032927 ( 11) AGATAAAC 1 chr1:39583039-39583119 ( 41) AGATAAAC 1 chr2:38591494-38591574 ( 30) AGATAAAC 1 chr7:130419640-130419720 ( 65) AGATAAAC 1 chr20:57596207-57596287 ( 38) AGATAATA 1 chr20:48715000-48715080 ( 2) AGATAATA 1 chr7:1687902-1687982 ( 35) AGATAATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 1.1e-002 211 -1104 -1104 -1104 -1104 -1104 187 -1104 211 -1104 -1104 -1104 -1104 -1104 -1104 219 211 -1104 -1104 -1104 211 -1104 -1104 -1104 -29 -1104 129 -62 30 47 29 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.1e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.190476 0.000000 0.666667 0.142857 0.285714 0.380952 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGV MEME-3 regular expression -------------------------------------------------------------------------------- AGATAAG[CGA] -------------------------------------------------------------------------------- Time 12.51 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCCKC MEME-4 width = 8 sites = 14 llr = 138 E-value = 8.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCCKC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::aa7:a probability G ::::::6: matrix T aaa::34: bits 2.2 *** 2.0 *** 1.8 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCCGC consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCKC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:37120047-37120127 20 1.66e-05 CAAGTACGCG TTTCCCGC TGCCCAGGTC chr1:154909021-154909101 27 1.66e-05 CCCTTCCACC TTTCCCGC CTCACGGACA chr7:100797427-100797507 19 1.66e-05 TCTCACCCCT TTTCCCGC CTTTTTGCCC chr16:29984714-29984794 71 1.66e-05 AGCAGTCTAT TTTCCCGC CT chr19:56015117-56015197 60 1.66e-05 GCAAGCGTCC TTTCCCGC CTTTTTTTTT chr7:100025812-100025892 51 1.66e-05 TCAACCCAGG TTTCCCGC CACCAAGAAA chr9:37079426-37079506 41 1.66e-05 CACGGAGGCG TTTCCCGC TCCAGGGCTG chr8:130587043-130587123 33 3.00e-05 ctccctgttt tttccctc tctccctctc chr9:37769484-37769564 4 3.00e-05 TAC TTTCCCTC CTAACTAGGT chr2:219433223-219433303 44 3.00e-05 CCCCCCACCA TTTCCCTC CTACGCAACC chr17:34838826-34838906 10 4.32e-05 TAGACGCAC TTTCCTGC CGCCTGGCGA chr8:67018078-67018158 1 5.38e-05 . tttccttc aaggcttggt chr8:102166203-102166283 38 5.38e-05 ccctcctttt tttccttc ctgctgccta chr1:43638467-43638547 51 5.38e-05 GATCATTATA TTTCCTTC AGGAAATCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCKC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:37120047-37120127 1.7e-05 19_[+4]_53 chr1:154909021-154909101 1.7e-05 26_[+4]_46 chr7:100797427-100797507 1.7e-05 18_[+4]_54 chr16:29984714-29984794 1.7e-05 70_[+4]_2 chr19:56015117-56015197 1.7e-05 59_[+4]_13 chr7:100025812-100025892 1.7e-05 50_[+4]_22 chr9:37079426-37079506 1.7e-05 40_[+4]_32 chr8:130587043-130587123 3e-05 32_[+4]_40 chr9:37769484-37769564 3e-05 3_[+4]_69 chr2:219433223-219433303 3e-05 43_[+4]_29 chr17:34838826-34838906 4.3e-05 9_[+4]_63 chr8:67018078-67018158 5.4e-05 [+4]_72 chr8:102166203-102166283 5.4e-05 37_[+4]_35 chr1:43638467-43638547 5.4e-05 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCKC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCCKC width=8 seqs=14 chr9:37120047-37120127 ( 20) TTTCCCGC 1 chr1:154909021-154909101 ( 27) TTTCCCGC 1 chr7:100797427-100797507 ( 19) TTTCCCGC 1 chr16:29984714-29984794 ( 71) TTTCCCGC 1 chr19:56015117-56015197 ( 60) TTTCCCGC 1 chr7:100025812-100025892 ( 51) TTTCCCGC 1 chr9:37079426-37079506 ( 41) TTTCCCGC 1 chr8:130587043-130587123 ( 33) TTTCCCTC 1 chr9:37769484-37769564 ( 4) TTTCCCTC 1 chr2:219433223-219433303 ( 44) TTTCCCTC 1 chr17:34838826-34838906 ( 10) TTTCCTGC 1 chr8:67018078-67018158 ( 1) TTTCCTTC 1 chr8:102166203-102166283 ( 38) TTTCCTTC 1 chr1:43638467-43638547 ( 51) TTTCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCKC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 8.2e+001 -1045 -1045 -1045 219 -1045 -1045 -1045 219 -1045 -1045 -1045 219 -1045 186 -1045 -1045 -1045 186 -1045 -1045 -1045 137 -1045 38 -1045 -1045 106 97 -1045 186 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCKC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 8.2e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 0.571429 0.428571 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCKC MEME-4 regular expression -------------------------------------------------------------------------------- TTTCC[CT][GT]C -------------------------------------------------------------------------------- Time 16.21 secs. ******************************************************************************** ******************************************************************************** MOTIF CHTTTTTT MEME-5 width = 8 sites = 18 llr = 168 E-value = 4.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHTTTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3:::::3 pos.-specific C a4::::3: probability G :1:::::: matrix T :2aaaa77 bits 2.2 **** 2.0 **** 1.8 * **** 1.5 * **** Relative 1.3 * ****** Entropy 1.1 * ****** (13.4 bits) 0.9 * ****** 0.7 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel CCTTTTTT consensus A CA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTTTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:169990950-169991030 48 1.55e-05 ccccatattt cctttttt cctgttcctc chr7:130419843-130419923 23 1.55e-05 TGGAGGTTTG CCTTTTTT ATAATCAAAT chr1:12123358-12123438 29 1.55e-05 GTGTTTGCCC CCTTTTTT CTTCGCTGCT chr12:4377299-4377379 34 1.55e-05 AATTATAGCT CATTTTTT CCCCCAGAAG chr1:36023586-36023666 73 2.21e-05 CAATATATAT CTTTTTTT chr19:56015117-56015197 68 2.21e-05 CCTTTCCCGC CTTTTTTT TTTCT chr7:101397799-101397879 20 2.21e-05 AAGGAAGGTT CTTTTTTT TGTTTTGTTT chr5:112196711-112196791 62 3.85e-05 GAAGTTAAAC CCTTTTTA GTGGCGGTGC chr6:26026018-26026098 48 3.85e-05 atgactcaca cattttta tctccagctc chr6:159460773-159460853 13 3.85e-05 GAAGATGACA CATTTTTA CAACATTCTG chr11:59570260-59570340 8 3.85e-05 GTTCACA CCTTTTTA AGCCATGTGC chr2:114261802-114261882 61 3.85e-05 CCGTTTCATT CATTTTTA CTTAATAACG chr5:124082059-124082139 30 5.80e-05 ACGAATCAGT CCTTTTCT CCTTAAAAAA chr15:34908939-34909019 32 5.80e-05 ACACTCAGAA CATTTTCT CAGCATGCCC chr3:33984135-33984215 27 5.80e-05 AATTGCATTT CCTTTTCT CCTACCTTCT chr3:32876021-32876101 47 5.80e-05 ACGAACATTT CATTTTCT TATAAAAGGA chr3:45709703-45709783 68 7.35e-05 ACTTTCTTTT CTTTTTCT TCTGC chr21:38361873-38361953 64 8.18e-05 ccCCAGCTTC CGTTTTTT AATGTTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTTTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:169990950-169991030 1.5e-05 47_[+5]_25 chr7:130419843-130419923 1.5e-05 22_[+5]_50 chr1:12123358-12123438 1.5e-05 28_[+5]_44 chr12:4377299-4377379 1.5e-05 33_[+5]_39 chr1:36023586-36023666 2.2e-05 72_[+5] chr19:56015117-56015197 2.2e-05 67_[+5]_5 chr7:101397799-101397879 2.2e-05 19_[+5]_53 chr5:112196711-112196791 3.9e-05 61_[+5]_11 chr6:26026018-26026098 3.9e-05 47_[+5]_25 chr6:159460773-159460853 3.9e-05 12_[+5]_60 chr11:59570260-59570340 3.9e-05 7_[+5]_65 chr2:114261802-114261882 3.9e-05 60_[+5]_12 chr5:124082059-124082139 5.8e-05 29_[+5]_43 chr15:34908939-34909019 5.8e-05 31_[+5]_41 chr3:33984135-33984215 5.8e-05 26_[+5]_46 chr3:32876021-32876101 5.8e-05 46_[+5]_26 chr3:45709703-45709783 7.3e-05 67_[+5]_5 chr21:38361873-38361953 8.2e-05 63_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTTTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHTTTTTT width=8 seqs=18 chr2:169990950-169991030 ( 48) CCTTTTTT 1 chr7:130419843-130419923 ( 23) CCTTTTTT 1 chr1:12123358-12123438 ( 29) CCTTTTTT 1 chr12:4377299-4377379 ( 34) CATTTTTT 1 chr1:36023586-36023666 ( 73) CTTTTTTT 1 chr19:56015117-56015197 ( 68) CTTTTTTT 1 chr7:101397799-101397879 ( 20) CTTTTTTT 1 chr5:112196711-112196791 ( 62) CCTTTTTA 1 chr6:26026018-26026098 ( 48) CATTTTTA 1 chr6:159460773-159460853 ( 13) CATTTTTA 1 chr11:59570260-59570340 ( 8) CCTTTTTA 1 chr2:114261802-114261882 ( 61) CATTTTTA 1 chr5:124082059-124082139 ( 30) CCTTTTCT 1 chr15:34908939-34909019 ( 32) CATTTTCT 1 chr3:33984135-33984215 ( 27) CCTTTTCT 1 chr3:32876021-32876101 ( 47) CATTTTCT 1 chr3:45709703-45709783 ( 68) CTTTTTCT 1 chr21:38361873-38361953 ( 64) CGTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTTTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 4.5e+001 -1081 186 -1081 -1081 52 50 -229 2 -1081 -1081 -1081 219 -1081 -1081 -1081 219 -1081 -1081 -1081 219 -1081 -1081 -1081 219 -1081 1 -1081 172 26 -1081 -1081 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTTTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 4.5e+001 0.000000 1.000000 0.000000 0.000000 0.333333 0.388889 0.055556 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.277778 0.000000 0.722222 0.277778 0.000000 0.000000 0.722222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHTTTTTT MEME-5 regular expression -------------------------------------------------------------------------------- C[CAT]TTTT[TC][TA] -------------------------------------------------------------------------------- Time 19.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:113011-113091 1.48e-01 80 chr5:179364133-179364213 9.98e-01 80 chr17:42906546-42906626 6.93e-01 80 chr6:7548218-7548298 5.52e-01 80 chr7:101397799-101397879 4.47e-02 19_[+5(2.21e-05)]_53 chr17:46826593-46826673 7.65e-01 80 chr7:130419640-130419720 1.47e-01 64_[+3(4.80e-05)]_8 chr21:44909717-44909797 9.92e-01 80 chr9:110830-110910 9.44e-01 80 chr1:153377272-153377352 4.37e-01 80 chr1:43638467-43638547 6.02e-03 50_[+4(5.38e-05)]_22 chr17:43661172-43661252 6.93e-03 80 chr17:47755688-47755768 9.90e-01 80 chr3:56717423-56717503 9.72e-01 80 chr22:20014842-20014922 1.86e-01 80 chr3:150481796-150481876 7.75e-01 80 chr12:4377299-4377379 9.30e-04 13_[+5(3.85e-05)]_12_[+5(1.55e-05)]_\ 39 chr8:71581624-71581704 4.74e-01 80 chr17:77776510-77776590 4.71e-03 19_[+1(7.21e-05)]_24_[+2(8.00e-05)]_\ 21 chr3:32876021-32876101 5.15e-02 46_[+5(5.80e-05)]_26 chr19:38943540-38943620 1.99e-01 80 chr7:155414252-155414332 3.06e-01 80 chr20:34359677-34359757 5.16e-01 80 chr8:30770564-30770644 4.42e-01 80 chr10:124714017-12471409 9.41e-01 80 chr3:127347691-127347771 8.92e-01 80 chr5:8457411-8457491 8.84e-01 80 chr12:122711076-12271115 1.81e-01 6_[+2(1.83e-05)]_66 chr7:12250660-12250740 6.91e-01 80 chr1:182573668-182573748 6.64e-01 80 chr19:47746263-47746343 9.89e-01 80 chr5:96519554-96519634 7.10e-01 80 chr1:25254633-25254713 8.14e-01 80 chr18:158212-158292 1.70e-01 80 chr17:40897169-40897249 9.90e-01 80 chr2:175202628-175202708 5.60e-01 80 chr6:10348132-10348212 5.20e-02 20_[+1(1.18e-05)]_52 chr9:37079426-37079506 2.18e-02 40_[+4(1.66e-05)]_32 chr19:9186440-9186520 5.17e-01 80 chr5:34924215-34924295 5.97e-03 6_[+1(5.29e-05)]_4_[+1(1.18e-05)]_\ 54 chr6:30434162-30434242 9.17e-01 80 chr16:21531953-21532033 9.73e-01 80 chr21:38361873-38361953 4.74e-02 63_[+5(8.18e-05)]_9 chr5:176794503-176794583 4.78e-01 80 chr16:82204023-82204103 9.46e-01 80 chr16:87903296-87903376 9.58e-01 80 chr11:93394598-93394678 5.33e-01 80 chrX:47518796-47518876 8.61e-01 80 chr1:151964885-151964965 8.74e-01 80 chr3:10289877-10289957 6.10e-01 80 chr7:142985112-142985192 9.14e-01 80 chr16:66586549-66586629 6.89e-01 80 chr20:49092631-49092711 1.26e-01 80 chr22:20004621-20004701 8.75e-01 80 chr7:100025812-100025892 2.18e-03 50_[+4(1.66e-05)]_22 chr2:114261802-114261882 4.27e-03 60_[+5(3.85e-05)]_12 chr16:29625239-29625319 9.85e-01 80 chr3:148898043-148898123 2.06e-02 80 chr5:154062563-154062643 9.39e-01 80 chr6:13874153-13874233 9.44e-01 80 chr19:56015117-56015197 7.90e-04 66_[+5(1.55e-05)]_6 chr19:49631140-49631220 9.67e-01 80 chr9:128508568-128508648 6.60e-01 80 chr1:36023586-36023666 1.12e-01 72_[+5(2.21e-05)] chr1:12123358-12123438 3.55e-06 2_[+1(2.34e-05)]_18_[+5(1.55e-05)]_\ 44 chr11:107436855-10743693 8.32e-03 16_[+1(2.34e-05)]_56 chr2:219433223-219433303 8.13e-02 43_[+4(3.00e-05)]_29 chr10:103986136-10398621 3.18e-01 80 chr20:247416-247496 1.98e-02 67_[+3(1.31e-05)]_5 chr3:45709703-45709783 1.58e-03 31_[+1(7.21e-05)]_28_[+5(7.35e-05)]_\ 5 chr1:32816664-32816744 9.92e-01 80 chr7:123178413-123178493 1.46e-01 80 chr5:112378684-112378764 7.59e-03 80 chr11:67250770-67250850 9.92e-01 80 chr16:23834890-23834970 8.55e-01 80 chr17:42906747-42906827 8.90e-02 80 chr3:148804483-148804563 1.44e-01 80 chr18:19747825-19747905 7.95e-01 80 chr19:56151567-56151647 6.79e-01 80 chr9:99983984-99984064 2.04e-01 80 chr1:93250955-93251035 6.95e-01 80 chr6:11144062-11144142 2.32e-01 80 chr9:95571453-95571533 9.26e-01 80 chr17:40950861-40950941 9.61e-01 80 chr7:2393622-2393702 6.02e-01 80 chr7:155082874-155082954 4.58e-02 45_[+1(1.18e-05)]_27 chr6:35311367-35311447 2.26e-01 80 chr7:148400637-148400717 6.97e-01 80 chr2:239147740-239147820 1.65e-01 59_[+2(5.82e-05)]_13 chr7:130419843-130419923 3.26e-02 22_[+5(1.55e-05)]_50 chr19:50837234-50837314 9.54e-01 80 chr19:14016787-14016867 1.21e-01 80 chr16:29984714-29984794 4.95e-03 70_[+4(1.66e-05)]_2 chr20:34189467-34189547 1.13e-01 21_[+2(5.82e-05)]_51 chr2:74757755-74757835 2.07e-01 80 chr5:70681225-70681305 2.14e-01 80 chr6:20458750-20458830 2.98e-02 14_[+3(1.31e-05)]_58 chr7:101398012-101398092 5.17e-02 13_[+2(1.83e-05)]_59 chr4:84405856-84405936 6.49e-01 80 chr1:44992545-44992625 2.19e-02 43_[+1(1.18e-05)]_29 chr11:59570260-59570340 2.04e-03 7_[+5(3.85e-05)]_65 chrX:14083178-14083258 5.82e-02 21_[+1(5.29e-05)]_51 chr5:179499248-179499328 8.22e-01 80 chr7:23636842-23636922 2.51e-02 63_[+2(1.83e-05)]_9 chr19:13029930-13030010 6.23e-01 80 chr1:92446379-92446459 2.24e-01 80 chr11:60681671-60681751 1.36e-01 80 chr12:104198892-10419897 3.75e-01 80 chr2:75185554-75185634 8.25e-01 80 chr19:55987542-55987622 9.53e-02 44_[+2(1.83e-05)]_28 chr6:161223153-161223233 7.40e-02 80 chr1:151762851-151762931 3.63e-01 80 chr7:1687902-1687982 7.30e-03 34_[+3(9.79e-05)]_38 chr4:39368011-39368091 3.37e-01 80 chr5:37672388-37672468 5.32e-01 80 chr19:46094346-46094426 1.36e-01 50_[+2(1.83e-05)]_22 chr7:26890132-26890212 1.48e-01 15_[+1(2.34e-05)]_57 chr19:49925965-49926045 6.58e-01 80 chr19:44144264-44144344 9.39e-01 80 chr6:159460773-159460853 4.82e-03 12_[+5(3.85e-05)]_60 chr17:46048718-46048798 1.29e-01 16_[+2(1.83e-05)]_56 chr7:29686807-29686887 3.10e-01 80 chr17:55063217-55063297 2.51e-01 80 chr6:42472577-42472657 5.47e-01 80 chr7:151217323-151217403 5.01e-01 80 chr7:106675991-106676071 1.65e-02 54_[+1(2.34e-05)]_18 chr1:247241910-247241990 6.29e-01 80 chr7:100797427-100797507 4.29e-03 18_[+4(1.66e-05)]_54 chr1:28051994-28052074 1.32e-01 80 chr8:102166203-102166283 4.31e-04 31_[+5(1.55e-05)]_41 chr15:83315974-83316054 9.54e-02 38_[+2(8.00e-05)]_34 chr1:53079862-53079942 3.56e-01 80 chr1:145109501-145109581 1.16e-01 80 chr17:21454515-21454595 6.54e-01 80 chr5:122199092-122199172 1.41e-01 17_[+3(3.69e-05)]_55 chr5:74862812-74862892 8.73e-02 80 chr6:3912251-3912331 7.18e-03 64_[+1(5.29e-05)]_8 chr10:5726427-5726507 1.30e-01 40_[+2(3.67e-05)]_32 chr5:43042791-43042871 4.53e-02 80 chr22:19157127-19157207 9.98e-01 80 chr6:114292645-114292725 1.85e-01 40_[+2(3.67e-05)]_32 chr6:47277557-47277637 8.79e-01 80 chr8:29107600-29107680 3.40e-02 46_[+1(3.82e-05)]_26 chr2:176997111-176997191 8.05e-01 80 chr3:33984135-33984215 1.42e-03 26_[+5(5.80e-05)]_29_[+3(3.69e-05)]_\ 9 chr13:52733822-52733902 3.75e-01 80 chr22:40022316-40022396 8.60e-02 34_[+3(3.69e-05)]_38 chr15:41523011-41523091 1.86e-01 80 chr1:154909021-154909101 6.59e-02 26_[+4(1.66e-05)]_46 chr15:70390099-70390179 9.98e-01 80 chr6:26026018-26026098 1.28e-03 38_[+1(3.82e-05)]_1_[+5(3.85e-05)]_\ 25 chr6:35993466-35993546 9.86e-03 58_[+3(3.69e-05)]_14 chr15:69139366-69139446 3.37e-02 52_[+1(6.27e-05)]_20 chr1:229406629-229406709 5.27e-01 80 chr15:69136058-69136138 8.59e-01 80 chr2:11605920-11606000 6.90e-01 80 chr17:35306028-35306108 1.18e-01 80 chr11:66326689-66326769 3.25e-01 80 chr18:12948544-12948624 4.64e-01 80 chr12:46662639-46662719 3.97e-01 80 chr9:37769484-37769564 9.19e-03 3_[+4(3.00e-05)]_69 chr1:10571151-10571231 1.47e-02 25_[+1(8.67e-05)]_15_[+1(3.82e-05)]_\ 24 chr17:34838826-34838906 8.05e-02 9_[+4(4.32e-05)]_63 chr3:45634873-45634953 8.05e-03 21_[+2(5.82e-05)]_51 chr8:67018078-67018158 1.35e-05 [+4(5.38e-05)]_25_[+3(3.69e-05)]_6_\ [+1(1.18e-05)]_25 chr5:132576333-132576413 1.16e-02 30_[+1(1.18e-05)]_11_[+1(1.18e-05)]_\ 23 chr10:99496651-99496731 4.48e-02 48_[+2(1.83e-05)]_24 chr7:100488033-100488113 1.52e-01 47_[+2(3.67e-05)]_25 chr12:112811428-11281150 2.45e-01 80 chr1:120195901-120195981 9.53e-02 80 chr10:7070347-7070427 5.53e-01 80 chr9:123837039-123837119 9.97e-01 80 chr5:75668598-75668678 3.19e-03 13_[+1(1.18e-05)]_59 chr22:21910421-21910501 1.46e-02 52_[+1(5.29e-05)]_20 chr15:35849834-35849914 9.19e-02 15_[+1(5.29e-05)]_34_[+1(8.67e-05)]_\ 15 chr2:191136658-191136738 9.02e-01 80 chrX:129402975-129403055 5.13e-01 80 chr1:184942780-184942860 1.13e-01 80 chr6:6886784-6886864 3.57e-02 56_[+2(5.82e-05)]_16 chr15:34908939-34909019 2.30e-03 31_[+5(5.80e-05)]_41 chr19:17953278-17953358 6.54e-01 80 chr16:70470031-70470111 8.80e-02 29_[+1(3.82e-05)]_43 chrX:133682384-133682464 1.94e-01 80 chr16:58010485-58010565 3.95e-03 33_[+3(3.69e-05)]_39 chr19:6425619-6425699 1.47e-01 19_[+2(5.82e-05)]_53 chr7:72722898-72722978 3.55e-01 80 chr8:130587043-130587123 1.53e-03 32_[+4(3.00e-05)]_40 chr17:62919217-62919297 6.27e-01 80 chr20:61493516-61493596 8.80e-01 80 chr20:48598936-48599016 2.88e-02 46_[+2(8.00e-05)]_26 chr8:37949387-37949467 1.03e-01 52_[+3(3.69e-05)]_20 chr11:66726261-66726341 3.30e-01 80 chr19:50393383-50393463 8.15e-02 46_[+2(3.67e-05)]_26 chr22:43253496-43253576 6.97e-01 80 chr5:153121750-153121830 7.54e-02 48_[+3(3.69e-05)]_24 chr7:88319305-88319385 1.14e-01 3_[+3(6.83e-05)]_53_[+3(3.69e-05)]_\ 8 chr20:48715000-48715080 3.30e-01 1_[+3(9.79e-05)]_71 chr1:249183789-249183869 2.05e-01 37_[+3(3.69e-05)]_35 chr2:38591494-38591574 3.09e-02 29_[+3(4.80e-05)]_43 chr8:98788659-98788739 2.78e-03 21_[+2(1.83e-05)]_51 chr4:187766511-187766591 5.52e-02 80 chr17:45784200-45784280 2.60e-01 80 chr22:41107701-41107781 2.52e-05 5_[+1(2.34e-05)]_19_[+3(1.31e-05)]_\ 40 chr9:117373371-117373451 3.46e-01 80 chr7:86740257-86740337 9.46e-03 37_[+1(5.29e-05)]_35 chr2:30670640-30670720 1.62e-01 52_[+2(3.67e-05)]_20 chr11:121128169-12112824 2.90e-01 80 chr3:135915518-135915598 9.41e-02 80 chr19:50529328-50529408 8.60e-01 80 chr19:35800864-35800944 9.64e-01 80 chr3:196758477-196758557 1.02e-02 69_[+1(1.18e-05)]_3 chr2:65233753-65233833 1.76e-01 49_[+1(3.82e-05)]_14_[+1(8.67e-05)]_\ 1 chr16:30064287-30064367 7.68e-01 80 chr20:33301348-33301428 1.36e-03 24_[+3(1.31e-05)]_30_[+1(1.18e-05)]_\ 10 chr17:42015597-42015677 4.41e-01 80 chr21:38827798-38827878 7.83e-02 28_[+1(2.34e-05)]_44 chr1:38989332-38989412 3.28e-01 80 chr12:125389427-12538950 1.14e-01 80 chr1:39851441-39851521 3.26e-01 80 chr1:35745007-35745087 7.22e-03 39_[+1(5.29e-05)]_33 chr21:38729207-38729287 8.28e-01 80 chr8:74284055-74284135 1.54e-02 80 chr1:61736948-61737028 2.61e-02 20_[+1(3.82e-05)]_52 chr5:124082059-124082139 8.29e-03 29_[+5(5.80e-05)]_43 chr1:39583039-39583119 2.52e-05 40_[+3(4.80e-05)]_6_[+1(5.29e-05)]_\ 18 chr2:242766062-242766142 5.95e-01 80 chr8:67978658-67978738 1.95e-01 80 chr14:34513206-34513286 4.40e-01 80 chr2:64479902-64479982 7.30e-03 39_[+1(8.67e-05)]_33 chr19:14561135-14561215 7.57e-01 80 chr9:37120047-37120127 1.07e-01 19_[+4(1.66e-05)]_53 chr8:126676807-126676887 1.11e-02 20_[+1(5.29e-05)]_52 chr20:57596207-57596287 2.11e-01 37_[+3(9.79e-05)]_35 chr6:91078876-91078956 2.66e-02 20_[+1(1.18e-05)]_52 chr9:111896523-111896603 2.13e-02 80 chr6:27741807-27741887 1.66e-01 80 chr5:112196711-112196791 2.75e-02 61_[+5(3.85e-05)]_11 chr7:92439167-92439247 1.73e-02 26_[+1(2.34e-05)]_46 chr3:38388148-38388228 9.11e-01 80 chr21:45342082-45342162 2.59e-01 80 chr12:65563122-65563202 5.59e-01 80 chr6:28584228-28584308 6.15e-01 80 chr6:130173546-130173626 2.98e-02 34_[+1(7.21e-05)]_38 chr11:72032847-72032927 3.45e-03 10_[+3(4.80e-05)]_28_[+1(8.67e-05)]_\ 4_[+1(1.18e-05)]_14 chr6:108899888-108899968 6.21e-03 33_[+1(1.18e-05)]_39 chr11:35684813-35684893 5.14e-01 80 chr16:30597067-30597147 5.51e-02 80 chr2:169990950-169991030 4.96e-03 47_[+5(1.55e-05)]_25 chr1:51986196-51986276 1.49e-01 80 chr10:29421092-29421172 1.41e-02 27_[+1(6.27e-05)]_45 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************