******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMAD5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:68785906-68785986 1.0000 80 chr1:156461944-156462024 1.0000 80 chr4:38324881-38324961 1.0000 80 chr20:57195164-57195244 1.0000 80 chr11:61266670-61266750 1.0000 80 chr1:207779255-207779335 1.0000 80 chr1:245725283-245725363 1.0000 80 chr5:77075009-77075089 1.0000 80 chr1:40363139-40363219 1.0000 80 chr3:129119015-129119095 1.0000 80 chr2:108972850-108972930 1.0000 80 chr11:1372919-1372999 1.0000 80 chr19:5352582-5352662 1.0000 80 chr14:23120409-23120489 1.0000 80 chr6:37465200-37465280 1.0000 80 chr22:30840960-30841040 1.0000 80 chr5:95404040-95404120 1.0000 80 chr6:3939333-3939413 1.0000 80 chr17:57605012-57605092 1.0000 80 chr16:9085955-9086035 1.0000 80 chr12:68900590-68900670 1.0000 80 chr22:29548724-29548804 1.0000 80 chr5:16528660-16528740 1.0000 80 chr11:117997315-11799739 1.0000 80 chr13:30756557-30756637 1.0000 80 chr12:25086953-25087033 1.0000 80 chr4:184270567-184270647 1.0000 80 chr9:101552227-101552307 1.0000 80 chr11:10476584-10476664 1.0000 80 chr17:10694328-10694408 1.0000 80 chr4:83668017-83668097 1.0000 80 chr2:158108581-158108661 1.0000 80 chr5:132002214-132002294 1.0000 80 chr6:28688430-28688510 1.0000 80 chr12:15077069-15077149 1.0000 80 chr16:57716839-57716919 1.0000 80 chr2:68666052-68666132 1.0000 80 chr7:2913825-2913905 1.0000 80 chr11:65269193-65269273 1.0000 80 chr19:51640314-51640394 1.0000 80 chr8:117614905-117614985 1.0000 80 chr15:45019324-45019404 1.0000 80 chr3:193660513-193660593 1.0000 80 chr17:56743903-56743983 1.0000 80 chr7:75472535-75472615 1.0000 80 chrX:153191275-153191355 1.0000 80 chr2:145116789-145116869 1.0000 80 chr1:149215188-149215268 1.0000 80 chr12:49555374-49555454 1.0000 80 chr16:88753248-88753328 1.0000 80 chr6:37391753-37391833 1.0000 80 chr21:34607034-34607114 1.0000 80 chr12:112554115-11255419 1.0000 80 chr1:207779454-207779534 1.0000 80 chr11:120107450-12010753 1.0000 80 chr11:12786249-12786329 1.0000 80 chr17:41438562-41438642 1.0000 80 chr13:95892388-95892468 1.0000 80 chr6:28188474-28188554 1.0000 80 chr7:25019263-25019343 1.0000 80 chr1:230875492-230875572 1.0000 80 chr3:71113173-71113253 1.0000 80 chr10:23344494-23344574 1.0000 80 chr14:51135342-51135422 1.0000 80 chr1:20205012-20205092 1.0000 80 chr15:44084518-44084598 1.0000 80 chr22:50555975-50556055 1.0000 80 chr4:185115166-185115246 1.0000 80 chr9:130186278-130186358 1.0000 80 chr15:75052786-75052866 1.0000 80 chr20:52369771-52369851 1.0000 80 chr1:145438837-145438917 1.0000 80 chr5:173615441-173615521 1.0000 80 chr2:66170658-66170738 1.0000 80 chr12:9913409-9913489 1.0000 80 chr6:41041591-41041671 1.0000 80 chr12:132156012-13215609 1.0000 80 chr15:65715997-65716077 1.0000 80 chr18:75705597-75705677 1.0000 80 chr2:152685311-152685391 1.0000 80 chr11:121097356-12109743 1.0000 80 chr15:91192207-91192287 1.0000 80 chr14:20811439-20811519 1.0000 80 chr10:70847845-70847925 1.0000 80 chr19:17516624-17516704 1.0000 80 chr3:13044210-13044290 1.0000 80 chr19:56698403-56698483 1.0000 80 chr6:27835069-27835149 1.0000 80 chr4:142253001-142253081 1.0000 80 chr17:17255796-17255876 1.0000 80 chr1:52795980-52796060 1.0000 80 chr16:3030621-3030701 1.0000 80 chr7:100817734-100817814 1.0000 80 chr14:57476790-57476870 1.0000 80 chr1:145443058-145443138 1.0000 80 chr1:39492009-39492089 1.0000 80 chr6:28188674-28188754 1.0000 80 chr1:27392861-27392941 1.0000 80 chr8:125827839-125827919 1.0000 80 chr5:61561593-61561673 1.0000 80 chr12:102072091-10207217 1.0000 80 chr2:30884315-30884395 1.0000 80 chr5:141704536-141704616 1.0000 80 chr3:112359990-112360070 1.0000 80 chr6:26234953-26235033 1.0000 80 chrX:12993267-12993347 1.0000 80 chr7:99277374-99277454 1.0000 80 chr5:118753672-118753752 1.0000 80 chr17:57915628-57915708 1.0000 80 chr6:27833117-27833197 1.0000 80 chr6:26250754-26250834 1.0000 80 chr6:3118523-3118603 1.0000 80 chr14:20937566-20937646 1.0000 80 chr1:226400500-226400580 1.0000 80 chr6:15211432-15211512 1.0000 80 chr3:49058858-49058938 1.0000 80 chr20:5100545-5100625 1.0000 80 chr3:71922454-71922534 1.0000 80 chr12:58335396-58335476 1.0000 80 chr12:6643687-6643767 1.0000 80 chr19:40950138-40950218 1.0000 80 chr16:3070383-3070463 1.0000 80 chr2:68479960-68480040 1.0000 80 chr5:95065000-95065080 1.0000 80 chrX:16737527-16737607 1.0000 80 chr19:46010735-46010815 1.0000 80 chr1:160696000-160696080 1.0000 80 chr10:32428770-32428850 1.0000 80 chr9:101836652-101836732 1.0000 80 chr17:47841741-47841821 1.0000 80 chr1:76251935-76252015 1.0000 80 chr8:21776313-21776393 1.0000 80 chr19:5821887-5821967 1.0000 80 chr1:145470318-145470398 1.0000 80 chr10:23344703-23344783 1.0000 80 chr16:2955328-2955408 1.0000 80 chr1:159895216-159895296 1.0000 80 chr6:26033695-26033775 1.0000 80 chr6:26020696-26020776 1.0000 80 chr19:5309150-5309230 1.0000 80 chr14:102553308-10255338 1.0000 80 chr6:70320157-70320237 1.0000 80 chr19:13262434-13262514 1.0000 80 chr16:14726533-14726613 1.0000 80 chr14:70233836-70233916 1.0000 80 chr17:42607400-42607480 1.0000 80 chr2:46559329-46559409 1.0000 80 chr19:5434597-5434677 1.0000 80 chr7:39605951-39606031 1.0000 80 chr12:69633356-69633436 1.0000 80 chr19:48707684-48707764 1.0000 80 chr11:65194159-65194239 1.0000 80 chr1:210547425-210547505 1.0000 80 chr11:5526794-5526874 1.0000 80 chrX:23801308-23801388 1.0000 80 chr3:197211294-197211374 1.0000 80 chr17:56416533-56416613 1.0000 80 chr11:207681-207761 1.0000 80 chr12:8088692-8088772 1.0000 80 chr6:26031892-26031972 1.0000 80 chr9:137901841-137901921 1.0000 80 chr1:22379196-22379276 1.0000 80 chr11:61582919-61582999 1.0000 80 chr17:26421235-26421315 1.0000 80 chr10:7830126-7830206 1.0000 80 chr11:64937676-64937756 1.0000 80 chr19:11200153-11200233 1.0000 80 chr22:32819793-32819873 1.0000 80 chr11:66635938-66636018 1.0000 80 chrX:65235312-65235392 1.0000 80 chr17:45253978-45254058 1.0000 80 chr5:27217818-27217898 1.0000 80 chr3:129035029-129035109 1.0000 80 chr6:42713757-42713837 1.0000 80 chr2:192542843-192542923 1.0000 80 chr11:63448962-63449042 1.0000 80 chr1:245027748-245027828 1.0000 80 chr18:9014173-9014253 1.0000 80 chr12:76953679-76953759 1.0000 80 chr16:30087172-30087252 1.0000 80 chr19:39897518-39897598 1.0000 80 chr7:75988220-75988300 1.0000 80 chr1:68150891-68150971 1.0000 80 chr11:129939765-12993984 1.0000 80 chr3:38178904-38178984 1.0000 80 chr2:32264943-32265023 1.0000 80 chr1:228270401-228270481 1.0000 80 chr19:46195116-46195196 1.0000 80 chr20:49126907-49126987 1.0000 80 chr11:65267918-65267998 1.0000 80 chr1:167523700-167523780 1.0000 80 chr3:169491073-169491153 1.0000 80 chr6:26251946-26252026 1.0000 80 chr14:103800537-10380061 1.0000 80 chr17:62502329-62502409 1.0000 80 chr3:24537050-24537130 1.0000 80 chr2:201729317-201729397 1.0000 80 chr6:27870325-27870405 1.0000 80 chr5:95065223-95065303 1.0000 80 chr1:59249642-59249722 1.0000 80 chr16:87808569-87808649 1.0000 80 chr6:64282422-64282502 1.0000 80 chr17:21515768-21515848 1.0000 80 chr14:35836574-35836654 1.0000 80 chr20:32891104-32891184 1.0000 80 chr18:12991093-12991173 1.0000 80 chr1:22112424-22112504 1.0000 80 chr3:52025592-52025672 1.0000 80 chr4:68441113-68441193 1.0000 80 chr1:147735854-147735934 1.0000 80 chr11:65222754-65222834 1.0000 80 chr5:90679086-90679166 1.0000 80 chr7:106650764-106650844 1.0000 80 chr21:40721635-40721715 1.0000 80 chr1:185286308-185286388 1.0000 80 chr5:141348737-141348817 1.0000 80 chrX:39957120-39957200 1.0000 80 chr12:56360162-56360242 1.0000 80 chr19:39138292-39138372 1.0000 80 chr6:15020769-15020849 1.0000 80 chr6:13328837-13328917 1.0000 80 chr11:69061609-69061689 1.0000 80 chr4:142142060-142142140 1.0000 80 chr4:10118701-10118781 1.0000 80 chr7:127032694-127032774 1.0000 80 chr19:49497133-49497213 1.0000 80 chr2:152790058-152790138 1.0000 80 chr15:69745141-69745221 1.0000 80 chr11:65029413-65029493 1.0000 80 chrX:135962802-135962882 1.0000 80 chr8:101734268-101734348 1.0000 80 chr4:57333565-57333645 1.0000 80 chr5:170814832-170814912 1.0000 80 chr19:1269330-1269410 1.0000 80 chr7:7221931-7222011 1.0000 80 chr14:93041673-93041753 1.0000 80 chr6:31795495-31795575 1.0000 80 chr2:27545982-27546062 1.0000 80 chr17:42147466-42147546 1.0000 80 chr2:37423638-37423718 1.0000 80 chr9:86535871-86535951 1.0000 80 chr1:173991651-173991731 1.0000 80 chr14:75412969-75413049 1.0000 80 chr5:53609460-53609540 1.0000 80 chr22:38430756-38430836 1.0000 80 chr1:32801772-32801852 1.0000 80 chr11:64864070-64864150 1.0000 80 chr14:56683886-56683966 1.0000 80 chr13:111365600-11136568 1.0000 80 chr11:62648373-62648453 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SMAD5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SMAD5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.23 C 0.271 G 0.282 T 0.218 Background letter frequencies (from file dataset with add-one prior applied): A 0.23 C 0.271 G 0.282 T 0.218 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCWCWGCA MEME-1 width = 8 sites = 12 llr = 118 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCWCWGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::6:3::a pos.-specific C :a:a::a: probability G :::::a:: matrix T a:4:7::: bits 2.2 * * 2.0 ** * ** 1.8 ** * *** 1.5 ** * *** Relative 1.3 ** ***** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACTGCA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCWGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:64282422-64282502 30 1.41e-05 TCCGAGCCGC TCACTGCA TGGTAGAGTC chr10:32428770-32428850 62 1.41e-05 caactagggc tcactgca accttcatct chr1:52795980-52796060 26 1.41e-05 tgagatagtg tcactgca ctccagcctg chr11:117997315-11799739 41 1.41e-05 GAGGCATGTG TCACTGCA GCAAACAGGC chr3:129119015-129119095 38 1.41e-05 agatctcggc tcactgca acttctgcct chr2:32264943-32265023 27 2.75e-05 TCCCCGAGGC TCTCTGCA GTCCGCGTGA chr17:57915628-57915708 50 2.75e-05 CATAGGTCCA TCTCTGCA GAAGCCATTT chr22:50555975-50556055 3 2.75e-05 TG TCTCTGCA GCTGCCCAGC chr16:57716839-57716919 13 4.24e-05 GGCCTGAAGT TCACAGCA TGGGAAAGAC chr14:23120409-23120489 38 4.24e-05 CTGTCAGAAC TCACAGCA TAGTTAACAG chr8:101734268-101734348 20 5.65e-05 CACTCCGCAC TCTCAGCA CTAACCGCCG chr12:8088692-8088772 27 5.65e-05 AAAATGTCCT TCTCAGCA GCAAGTTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCWGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:64282422-64282502 1.4e-05 29_[+1]_43 chr10:32428770-32428850 1.4e-05 61_[+1]_11 chr1:52795980-52796060 1.4e-05 25_[+1]_47 chr11:117997315-11799739 1.4e-05 40_[+1]_32 chr3:129119015-129119095 1.4e-05 37_[+1]_35 chr2:32264943-32265023 2.7e-05 26_[+1]_46 chr17:57915628-57915708 2.7e-05 49_[+1]_23 chr22:50555975-50556055 2.7e-05 2_[+1]_70 chr16:57716839-57716919 4.2e-05 12_[+1]_60 chr14:23120409-23120489 4.2e-05 37_[+1]_35 chr8:101734268-101734348 5.6e-05 19_[+1]_53 chr12:8088692-8088772 5.6e-05 26_[+1]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCWGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCWCWGCA width=8 seqs=12 chr6:64282422-64282502 ( 30) TCACTGCA 1 chr10:32428770-32428850 ( 62) TCACTGCA 1 chr1:52795980-52796060 ( 26) TCACTGCA 1 chr11:117997315-11799739 ( 41) TCACTGCA 1 chr3:129119015-129119095 ( 38) TCACTGCA 1 chr2:32264943-32265023 ( 27) TCTCTGCA 1 chr17:57915628-57915708 ( 50) TCTCTGCA 1 chr22:50555975-50556055 ( 3) TCTCTGCA 1 chr16:57716839-57716919 ( 13) TCACAGCA 1 chr14:23120409-23120489 ( 38) TCACAGCA 1 chr8:101734268-101734348 ( 20) TCTCAGCA 1 chr12:8088692-8088772 ( 27) TCTCAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCWGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.6e+003 -1023 -1023 -1023 220 -1023 189 -1023 -1023 134 -1023 -1023 94 -1023 189 -1023 -1023 53 -1023 -1023 161 -1023 -1023 183 -1023 -1023 189 -1023 -1023 212 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCWGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.000000 0.000000 0.416667 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCWGCA MEME-1 regular expression -------------------------------------------------------------------------------- TC[AT]C[TA]GCA -------------------------------------------------------------------------------- Time 5.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCTTCT MEME-2 width = 8 sites = 2 llr = 24 E-value = 3.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a::a: probability G :::::::: matrix T aaa:aa:a bits 2.2 *** ** * 2.0 ******** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:68900590-68900670 33 7.88e-06 TTTTCCAAAG TTTCTTCT CTTAAGGGCA chr6:37465200-37465280 42 7.88e-06 aaaaacctgt tttcttct acaacacatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:68900590-68900670 7.9e-06 32_[+2]_40 chr6:37465200-37465280 7.9e-06 41_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTTCT width=8 seqs=2 chr12:68900590-68900670 ( 33) TTTCTTCT 1 chr6:37465200-37465280 ( 42) TTTCTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.7e+004 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 188 -765 -765 -765 -765 -765 219 -765 -765 -765 219 -765 188 -765 -765 -765 -765 -765 219 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.7e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTCT MEME-2 regular expression -------------------------------------------------------------------------------- TTTCTTCT -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCYTBC MEME-3 width = 8 sites = 14 llr = 130 E-value = 3.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCYTBC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:a6:4a probability G ::::::4: matrix T ::a:4a2: bits 2.2 * * 2.0 **** * * 1.8 **** * * 1.5 **** * * Relative 1.3 **** * * Entropy 1.1 ****** * (13.4 bits) 0.9 ****** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCTCC consensus T G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTBC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:12991093-12991173 38 1.88e-05 AGCTCCATTT CCTCCTCC GGACTCGCAG chr14:75412969-75413049 6 3.84e-05 GGTCT CCTCCTGC AATAAGCCAA chr8:101734268-101734348 57 3.84e-05 GGAAGCACCG CCTCCTGC ACCCTCTACT chr1:167523700-167523780 52 3.84e-05 AGGACTTATT CCTCCTGC AAACTTTTTC chr1:27392861-27392941 2 3.84e-05 t cctcctgc ctcagcttct chr4:38324881-38324961 41 3.84e-05 CAGTGCACCA CCTCCTGC ATCAAAATAG chr17:42147466-42147546 14 5.36e-05 GTGTGCCAAT CCTCTTCC CATACCAACA chr17:42607400-42607480 21 5.36e-05 AGGACAGGGG CCTCTTCC AGCAGGGCCA chr19:13262434-13262514 63 5.36e-05 GTGAAACTCT CCTCTTCC CCCACCCGGC chr9:101836652-101836732 8 5.36e-05 tcagtca cctcttcc tcatgagagg chr4:185115166-185115246 17 5.36e-05 TAGCTCTTTG CCTCTTCC TTGTCTCCTT chr16:30087172-30087252 25 6.87e-05 GGTTCCTCCA CCTCCTTC CCGATCTCAG chr7:25019263-25019343 39 6.87e-05 AGACCCGGGT CCTCCTTC CCCGGGAGCT chr22:30840960-30841040 51 6.87e-05 AGCTGGAATA CCTCCTTC AAACACTCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTBC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:12991093-12991173 1.9e-05 37_[+3]_35 chr14:75412969-75413049 3.8e-05 5_[+3]_67 chr8:101734268-101734348 3.8e-05 56_[+3]_16 chr1:167523700-167523780 3.8e-05 51_[+3]_21 chr1:27392861-27392941 3.8e-05 1_[+3]_71 chr4:38324881-38324961 3.8e-05 40_[+3]_32 chr17:42147466-42147546 5.4e-05 13_[+3]_59 chr17:42607400-42607480 5.4e-05 20_[+3]_52 chr19:13262434-13262514 5.4e-05 62_[+3]_10 chr9:101836652-101836732 5.4e-05 7_[+3]_65 chr4:185115166-185115246 5.4e-05 16_[+3]_56 chr16:30087172-30087252 6.9e-05 24_[+3]_48 chr7:25019263-25019343 6.9e-05 38_[+3]_34 chr22:30840960-30841040 6.9e-05 50_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTBC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCYTBC width=8 seqs=14 chr18:12991093-12991173 ( 38) CCTCCTCC 1 chr14:75412969-75413049 ( 6) CCTCCTGC 1 chr8:101734268-101734348 ( 57) CCTCCTGC 1 chr1:167523700-167523780 ( 52) CCTCCTGC 1 chr1:27392861-27392941 ( 2) CCTCCTGC 1 chr4:38324881-38324961 ( 41) CCTCCTGC 1 chr17:42147466-42147546 ( 14) CCTCTTCC 1 chr17:42607400-42607480 ( 21) CCTCTTCC 1 chr19:13262434-13262514 ( 63) CCTCTTCC 1 chr9:101836652-101836732 ( 8) CCTCTTCC 1 chr4:185115166-185115246 ( 17) CCTCTTCC 1 chr16:30087172-30087252 ( 25) CCTCCTTC 1 chr7:25019263-25019343 ( 39) CCTCCTTC 1 chr22:30840960-30841040 ( 51) CCTCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTBC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 3.8e+004 -1045 189 -1045 -1045 -1045 189 -1045 -1045 -1045 -1045 -1045 220 -1045 189 -1045 -1045 -1045 125 -1045 71 -1045 -1045 -1045 220 -1045 66 34 -2 -1045 189 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTBC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.357143 0.214286 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTBC MEME-3 regular expression -------------------------------------------------------------------------------- CCTC[CT]T[CGT]C -------------------------------------------------------------------------------- Time 12.72 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCAGCWG MEME-4 width = 8 sites = 20 llr = 181 E-value = 8.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCAGCWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8:3a::4: pos.-specific C ::7::a:: probability G :a::a::a matrix T 3:::::6: bits 2.2 * 2.0 * * 1.8 * *** * 1.5 * *** * Relative 1.3 ** *** * Entropy 1.1 ******** (13.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCAGCTG consensus T A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:64864070-64864150 31 1.90e-05 AGGGAGTACG AGCAGCTG AGGCGTCTGA chr7:75988220-75988300 16 1.90e-05 CCACAGAGCG AGCAGCTG AGGCGGCGGC chr1:40363139-40363219 57 1.90e-05 GGGGCCTTGG AGCAGCTG GCCAGGGTGG chr11:65267918-65267998 53 3.90e-05 CAAGCGAGCA AGCAGCAG TTCGTGGTGA chr1:228270401-228270481 50 3.90e-05 CCTGGCTCGG AGCAGCAG CCTCTGAGGT chr6:42713757-42713837 25 3.90e-05 CGGTCCTGAC AGCAGCAG CGGAGCAACT chr15:65715997-65716077 18 3.90e-05 gaggctaggg agcagcag atacaggacc chr22:50555975-50556055 18 3.90e-05 GCAGCTGCCC AGCAGCAG CGTGAAGCCC chr1:156461944-156462024 33 3.90e-05 TTGGGGCGGC AGCAGCAG GAGGGAGGTG chr4:10118701-10118781 68 5.52e-05 AGCTTGTAGG AGAAGCTG GGCTG chr1:167523700-167523780 17 5.52e-05 TCTGGGCGAC AGAAGCTG GCCTCAAAGT chr1:22379196-22379276 30 5.52e-05 GCCCCGGTGG AGAAGCTG AGGTGAGTGC chr6:26234953-26235033 53 5.52e-05 TGCGCTCCTT AGAAGCTG CCACTGCCTT chr22:38430756-38430836 15 9.02e-05 ACAATGAGTC AGAAGCAG CCAGCAGAGA chr17:56416533-56416613 2 9.02e-05 C TGCAGCTG CCTGCACAGG chr1:159895216-159895296 69 9.02e-05 AGGCAAGGGC TGCAGCTG CAAG chr10:70847845-70847925 39 9.02e-05 GAAGTTGGCG TGCAGCTG GGAGAGCTAG chr5:95404040-95404120 13 9.02e-05 AAACGGAATA AGAAGCAG GATTCTTGAA chr1:245725283-245725363 35 9.02e-05 CGTTGCGGAT TGCAGCTG TTTCATACCC chr20:57195164-57195244 51 9.02e-05 CATGATGCTT TGCAGCTG GGGAAATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:64864070-64864150 1.9e-05 30_[+4]_42 chr7:75988220-75988300 1.9e-05 15_[+4]_57 chr1:40363139-40363219 1.9e-05 56_[+4]_16 chr11:65267918-65267998 3.9e-05 52_[+4]_20 chr1:228270401-228270481 3.9e-05 49_[+4]_23 chr6:42713757-42713837 3.9e-05 24_[+4]_48 chr15:65715997-65716077 3.9e-05 17_[+4]_55 chr22:50555975-50556055 3.9e-05 17_[+4]_55 chr1:156461944-156462024 3.9e-05 32_[+4]_40 chr4:10118701-10118781 5.5e-05 67_[+4]_5 chr1:167523700-167523780 5.5e-05 16_[+4]_56 chr1:22379196-22379276 5.5e-05 29_[+4]_43 chr6:26234953-26235033 5.5e-05 52_[+4]_20 chr22:38430756-38430836 9e-05 14_[+4]_58 chr17:56416533-56416613 9e-05 1_[+4]_71 chr1:159895216-159895296 9e-05 68_[+4]_4 chr10:70847845-70847925 9e-05 38_[+4]_34 chr5:95404040-95404120 9e-05 12_[+4]_60 chr1:245725283-245725363 9e-05 34_[+4]_38 chr20:57195164-57195244 9e-05 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCAGCWG width=8 seqs=20 chr11:64864070-64864150 ( 31) AGCAGCTG 1 chr7:75988220-75988300 ( 16) AGCAGCTG 1 chr1:40363139-40363219 ( 57) AGCAGCTG 1 chr11:65267918-65267998 ( 53) AGCAGCAG 1 chr1:228270401-228270481 ( 50) AGCAGCAG 1 chr6:42713757-42713837 ( 25) AGCAGCAG 1 chr15:65715997-65716077 ( 18) AGCAGCAG 1 chr22:50555975-50556055 ( 18) AGCAGCAG 1 chr1:156461944-156462024 ( 33) AGCAGCAG 1 chr4:10118701-10118781 ( 68) AGAAGCTG 1 chr1:167523700-167523780 ( 17) AGAAGCTG 1 chr1:22379196-22379276 ( 30) AGAAGCTG 1 chr6:26234953-26235033 ( 53) AGAAGCTG 1 chr22:38430756-38430836 ( 15) AGAAGCAG 1 chr17:56416533-56416613 ( 2) TGCAGCTG 1 chr1:159895216-159895296 ( 69) TGCAGCTG 1 chr10:70847845-70847925 ( 39) TGCAGCTG 1 chr5:95404040-95404120 ( 13) AGAAGCAG 1 chr1:245725283-245725363 ( 35) TGCAGCTG 1 chr20:57195164-57195244 ( 51) TGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 8.5e+002 170 -1097 -1097 20 -1097 -1097 183 -1097 38 137 -1097 -1097 212 -1097 -1097 -1097 -1097 -1097 183 -1097 -1097 189 -1097 -1097 80 -1097 -1097 146 -1097 -1097 183 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 8.5e+002 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.300000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCWG MEME-4 regular expression -------------------------------------------------------------------------------- [AT]G[CA]AGC[TA]G -------------------------------------------------------------------------------- Time 16.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGGAG MEME-5 width = 8 sites = 13 llr = 124 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::8: pos.-specific C ::a::::: probability G 8a::aa2a matrix T 2::a:::: bits 2.2 * 2.0 ** 1.8 ***** * 1.5 ***** * Relative 1.3 ******* Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGGAG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:40721635-40721715 56 2.42e-05 gtgtcgtcca ggctggag tgcagtggtg chr7:75988220-75988300 48 2.42e-05 CGGAGGAGGC GGCTGGAG CTGCGACCGC chr16:30087172-30087252 42 2.42e-05 CCCGATCTCA GGCTGGAG AAGTGGTGCA chr1:159895216-159895296 34 2.42e-05 CGTTCAAGCG GGCTGGAG AGCGGCGCAC chr10:32428770-32428850 34 2.42e-05 ctgtcaccca ggctggag tgcaaaggcg chr22:29548724-29548804 13 2.42e-05 ctgtcgccca ggctggag agcagtggca chr3:129119015-129119095 5 2.42e-05 caca ggctggag tgcagtggag chr6:70320157-70320237 61 4.30e-05 gctttctcac tgctggag taggaagtta chr16:2955328-2955408 60 4.30e-05 CGCACCGCGT TGCTGGAG AATGTGTCCT chr12:9913409-9913489 67 4.30e-05 TGAAAGTCTT TGCTGGAG CTCTTG chr14:75412969-75413049 39 7.27e-05 AGGACAAGGT GGCTGGGG AACCCCATGC chr17:17255796-17255876 44 7.27e-05 TGAACAGATG GGCTGGGG ATGTGGCCTG chr18:75705597-75705677 4 7.27e-05 cgt ggctgggg aggcctcaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:40721635-40721715 2.4e-05 55_[+5]_17 chr7:75988220-75988300 2.4e-05 47_[+5]_25 chr16:30087172-30087252 2.4e-05 41_[+5]_31 chr1:159895216-159895296 2.4e-05 33_[+5]_39 chr10:32428770-32428850 2.4e-05 33_[+5]_39 chr22:29548724-29548804 2.4e-05 12_[+5]_60 chr3:129119015-129119095 2.4e-05 4_[+5]_68 chr6:70320157-70320237 4.3e-05 60_[+5]_12 chr16:2955328-2955408 4.3e-05 59_[+5]_13 chr12:9913409-9913489 4.3e-05 66_[+5]_6 chr14:75412969-75413049 7.3e-05 38_[+5]_34 chr17:17255796-17255876 7.3e-05 43_[+5]_29 chr18:75705597-75705677 7.3e-05 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGGAG width=8 seqs=13 chr21:40721635-40721715 ( 56) GGCTGGAG 1 chr7:75988220-75988300 ( 48) GGCTGGAG 1 chr16:30087172-30087252 ( 42) GGCTGGAG 1 chr1:159895216-159895296 ( 34) GGCTGGAG 1 chr10:32428770-32428850 ( 34) GGCTGGAG 1 chr22:29548724-29548804 ( 13) GGCTGGAG 1 chr3:129119015-129119095 ( 5) GGCTGGAG 1 chr6:70320157-70320237 ( 61) TGCTGGAG 1 chr16:2955328-2955408 ( 60) TGCTGGAG 1 chr12:9913409-9913489 ( 67) TGCTGGAG 1 chr14:75412969-75413049 ( 39) GGCTGGGG 1 chr17:17255796-17255876 ( 44) GGCTGGGG 1 chr18:75705597-75705677 ( 4) GGCTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 2.3e+004 -1035 -1035 145 8 -1035 -1035 183 -1035 -1035 189 -1035 -1035 -1035 -1035 -1035 220 -1035 -1035 183 -1035 -1035 -1035 183 -1035 174 -1035 -29 -1035 -1035 -1035 183 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.3e+004 0.000000 0.000000 0.769231 0.230769 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.769231 0.000000 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-5 regular expression -------------------------------------------------------------------------------- [GT]GCTGG[AG]G -------------------------------------------------------------------------------- Time 20.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:68785906-68785986 4.43e-01 80 chr1:156461944-156462024 5.51e-03 32_[+4(3.90e-05)]_40 chr4:38324881-38324961 2.11e-03 40_[+3(3.84e-05)]_32 chr20:57195164-57195244 2.82e-02 50_[+4(9.02e-05)]_22 chr11:61266670-61266750 8.76e-01 80 chr1:207779255-207779335 4.84e-01 80 chr1:245725283-245725363 7.88e-02 34_[+4(9.02e-05)]_38 chr5:77075009-77075089 3.50e-01 80 chr1:40363139-40363219 5.02e-02 56_[+4(1.90e-05)]_16 chr3:129119015-129119095 8.71e-04 4_[+5(2.42e-05)]_25_[+1(1.41e-05)]_\ 35 chr2:108972850-108972930 2.22e-01 80 chr11:1372919-1372999 9.32e-02 80 chr19:5352582-5352662 3.43e-01 80 chr14:23120409-23120489 3.56e-02 37_[+1(4.24e-05)]_35 chr6:37465200-37465280 1.04e-02 41_[+2(7.88e-06)]_31 chr22:30840960-30841040 8.76e-02 50_[+3(6.87e-05)]_22 chr5:95404040-95404120 1.18e-01 12_[+4(9.02e-05)]_60 chr6:3939333-3939413 8.36e-02 33_[+2(5.04e-05)]_39 chr17:57605012-57605092 1.58e-01 80 chr16:9085955-9086035 8.42e-01 80 chr12:68900590-68900670 1.23e-02 32_[+2(7.88e-06)]_40 chr22:29548724-29548804 7.16e-02 12_[+5(2.42e-05)]_60 chr5:16528660-16528740 1.73e-01 80 chr11:117997315-11799739 2.54e-02 40_[+1(1.41e-05)]_32 chr13:30756557-30756637 1.57e-01 80 chr12:25086953-25087033 6.09e-01 80 chr4:184270567-184270647 9.71e-02 80 chr9:101552227-101552307 1.31e-01 80 chr11:10476584-10476664 8.89e-01 80 chr17:10694328-10694408 5.18e-01 80 chr4:83668017-83668097 8.14e-01 80 chr2:158108581-158108661 5.21e-01 80 chr5:132002214-132002294 6.06e-01 80 chr6:28688430-28688510 8.03e-03 80 chr12:15077069-15077149 3.83e-01 80 chr16:57716839-57716919 2.08e-02 12_[+1(4.24e-05)]_60 chr2:68666052-68666132 9.76e-01 80 chr7:2913825-2913905 1.51e-01 80 chr11:65269193-65269273 1.62e-01 80 chr19:51640314-51640394 7.25e-01 80 chr8:117614905-117614985 1.81e-01 80 chr15:45019324-45019404 6.24e-01 80 chr3:193660513-193660593 4.05e-01 80 chr17:56743903-56743983 8.33e-01 80 chr7:75472535-75472615 9.56e-01 80 chrX:153191275-153191355 1.51e-01 80 chr2:145116789-145116869 9.22e-01 80 chr1:149215188-149215268 7.02e-01 80 chr12:49555374-49555454 8.78e-01 80 chr16:88753248-88753328 3.28e-02 80 chr6:37391753-37391833 5.62e-01 80 chr21:34607034-34607114 6.95e-01 80 chr12:112554115-11255419 8.63e-03 80 chr1:207779454-207779534 3.68e-01 80 chr11:120107450-12010753 6.73e-01 80 chr11:12786249-12786329 3.27e-01 80 chr17:41438562-41438642 8.33e-01 80 chr13:95892388-95892468 8.65e-01 80 chr6:28188474-28188554 1.08e-02 46_[+2(5.04e-05)]_26 chr7:25019263-25019343 2.05e-02 38_[+3(6.87e-05)]_34 chr1:230875492-230875572 4.98e-01 80 chr3:71113173-71113253 6.57e-01 80 chr10:23344494-23344574 7.31e-02 80 chr14:51135342-51135422 4.14e-01 80 chr1:20205012-20205092 2.06e-01 80 chr15:44084518-44084598 1.53e-01 80 chr22:50555975-50556055 1.81e-03 2_[+1(2.75e-05)]_7_[+4(3.90e-05)]_\ 55 chr4:185115166-185115246 4.05e-02 16_[+3(5.36e-05)]_56 chr9:130186278-130186358 8.99e-01 80 chr15:75052786-75052866 2.32e-01 80 chr20:52369771-52369851 4.67e-01 80 chr1:145438837-145438917 5.40e-01 80 chr5:173615441-173615521 8.69e-01 80 chr2:66170658-66170738 4.91e-01 80 chr12:9913409-9913489 2.96e-03 8_[+2(5.04e-05)]_50_[+5(4.30e-05)]_\ 6 chr6:41041591-41041671 3.18e-02 80 chr12:132156012-13215609 7.38e-01 80 chr15:65715997-65716077 2.47e-02 17_[+4(3.90e-05)]_55 chr18:75705597-75705677 1.01e-01 3_[+5(7.27e-05)]_69 chr2:152685311-152685391 9.05e-01 80 chr11:121097356-12109743 3.80e-01 80 chr15:91192207-91192287 3.57e-01 80 chr14:20811439-20811519 5.02e-01 80 chr10:70847845-70847925 7.22e-02 38_[+4(9.02e-05)]_34 chr19:17516624-17516704 7.39e-01 80 chr3:13044210-13044290 9.07e-01 80 chr19:56698403-56698483 3.52e-01 80 chr6:27835069-27835149 3.07e-01 80 chr4:142253001-142253081 3.08e-01 80 chr17:17255796-17255876 2.07e-02 43_[+5(7.27e-05)]_29 chr1:52795980-52796060 6.96e-02 25_[+1(1.41e-05)]_47 chr16:3030621-3030701 2.22e-01 80 chr7:100817734-100817814 5.86e-01 80 chr14:57476790-57476870 7.41e-01 80 chr1:145443058-145443138 1.36e-01 80 chr1:39492009-39492089 6.77e-01 80 chr6:28188674-28188754 4.82e-01 80 chr1:27392861-27392941 1.03e-02 1_[+3(3.84e-05)]_71 chr8:125827839-125827919 3.36e-01 80 chr5:61561593-61561673 2.78e-01 80 chr12:102072091-10207217 7.83e-02 80 chr2:30884315-30884395 6.09e-02 80 chr5:141704536-141704616 2.14e-01 80 chr3:112359990-112360070 3.42e-01 80 chr6:26234953-26235033 1.94e-02 52_[+4(5.52e-05)]_20 chrX:12993267-12993347 6.25e-02 46_[+3(3.84e-05)]_26 chr7:99277374-99277454 9.92e-01 80 chr5:118753672-118753752 9.94e-01 80 chr17:57915628-57915708 8.98e-03 49_[+1(2.75e-05)]_23 chr6:27833117-27833197 1.70e-01 80 chr6:26250754-26250834 3.12e-01 80 chr6:3118523-3118603 4.50e-01 80 chr14:20937566-20937646 9.15e-01 80 chr1:226400500-226400580 4.32e-02 80 chr6:15211432-15211512 5.40e-02 80 chr3:49058858-49058938 2.62e-01 80 chr20:5100545-5100625 5.71e-01 80 chr3:71922454-71922534 2.68e-01 80 chr12:58335396-58335476 7.30e-02 80 chr12:6643687-6643767 1.25e-01 80 chr19:40950138-40950218 1.49e-01 80 chr16:3070383-3070463 7.32e-03 55_[+5(9.56e-05)]_17 chr2:68479960-68480040 6.91e-01 80 chr5:95065000-95065080 8.62e-01 80 chrX:16737527-16737607 7.46e-01 80 chr19:46010735-46010815 1.05e-02 80 chr1:160696000-160696080 7.09e-01 80 chr10:32428770-32428850 6.02e-04 33_[+5(2.42e-05)]_20_[+1(1.41e-05)]_\ 11 chr9:101836652-101836732 8.87e-02 7_[+3(5.36e-05)]_65 chr17:47841741-47841821 6.04e-01 80 chr1:76251935-76252015 1.14e-01 80 chr8:21776313-21776393 4.09e-01 80 chr19:5821887-5821967 3.58e-01 80 chr1:145470318-145470398 4.51e-01 80 chr10:23344703-23344783 5.62e-01 80 chr16:2955328-2955408 8.05e-02 59_[+5(4.30e-05)]_13 chr1:159895216-159895296 1.30e-03 33_[+5(2.42e-05)]_27_[+4(9.02e-05)]_\ 4 chr6:26033695-26033775 8.03e-01 80 chr6:26020696-26020776 9.19e-01 80 chr19:5309150-5309230 9.37e-01 80 chr14:102553308-10255338 1.60e-01 80 chr6:70320157-70320237 1.94e-03 60_[+5(4.30e-05)]_12 chr19:13262434-13262514 3.58e-02 62_[+3(5.36e-05)]_10 chr16:14726533-14726613 6.18e-01 80 chr14:70233836-70233916 8.74e-01 80 chr17:42607400-42607480 4.53e-02 20_[+3(5.36e-05)]_52 chr2:46559329-46559409 9.41e-01 80 chr19:5434597-5434677 9.16e-01 80 chr7:39605951-39606031 4.13e-01 80 chr12:69633356-69633436 1.75e-01 80 chr19:48707684-48707764 7.84e-01 80 chr11:65194159-65194239 7.98e-01 80 chr1:210547425-210547505 8.19e-02 80 chr11:5526794-5526874 5.41e-02 80 chrX:23801308-23801388 7.63e-01 80 chr3:197211294-197211374 1.76e-01 80 chr17:56416533-56416613 9.69e-03 1_[+4(9.02e-05)]_71 chr11:207681-207761 6.98e-01 80 chr12:8088692-8088772 9.72e-03 26_[+1(5.65e-05)]_46 chr6:26031892-26031972 7.86e-01 80 chr9:137901841-137901921 7.64e-01 80 chr1:22379196-22379276 1.07e-01 29_[+4(5.52e-05)]_43 chr11:61582919-61582999 7.66e-01 80 chr17:26421235-26421315 5.41e-01 80 chr10:7830126-7830206 2.63e-01 80 chr11:64937676-64937756 2.54e-02 63_[+1(9.04e-05)]_9 chr19:11200153-11200233 2.62e-01 80 chr22:32819793-32819873 7.06e-01 80 chr11:66635938-66636018 6.98e-01 80 chrX:65235312-65235392 2.34e-01 80 chr17:45253978-45254058 5.27e-01 80 chr5:27217818-27217898 3.93e-01 80 chr3:129035029-129035109 5.22e-01 80 chr6:42713757-42713837 5.12e-03 24_[+4(3.90e-05)]_48 chr2:192542843-192542923 5.39e-01 80 chr11:63448962-63449042 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9.25e-01 80 chr13:111365600-11136568 5.12e-01 80 chr11:62648373-62648453 6.04e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************