******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SKIL.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:113689541-113689621 1.0000 80 chr15:66994532-66994612 1.0000 80 chr7:150694265-150694345 1.0000 80 chr6:158826597-158826677 1.0000 80 chr7:75277478-75277558 1.0000 80 chr21:46898159-46898239 1.0000 80 chr17:7744938-7745018 1.0000 80 chr9:94262999-94263079 1.0000 80 chr2:239113081-239113161 1.0000 80 chr12:63307862-63307942 1.0000 80 chr2:75089584-75089664 1.0000 80 chr7:129882144-129882224 1.0000 80 chr21:45848408-45848488 1.0000 80 chr1:32966463-32966543 1.0000 80 chr7:65715860-65715940 1.0000 80 chr19:34818922-34819002 1.0000 80 chr17:81153476-81153556 1.0000 80 chr11:1439620-1439700 1.0000 80 chr1:1624234-1624314 1.0000 80 chr3:49271230-49271310 1.0000 80 chr1:61918954-61919034 1.0000 80 chr19:12638401-12638481 1.0000 80 chrX:152992305-152992385 1.0000 80 chr19:41104211-41104291 1.0000 80 chr16:90061668-90061748 1.0000 80 chr19:11892240-11892320 1.0000 80 chr19:18220957-18221037 1.0000 80 chr19:39453018-39453098 1.0000 80 chr15:101626649-10162672 1.0000 80 chr8:126175771-126175851 1.0000 80 chr19:11943227-11943307 1.0000 80 chr14:37667140-37667220 1.0000 80 chr19:7083173-7083253 1.0000 80 chr8:129162387-129162467 1.0000 80 chr12:7126140-7126220 1.0000 80 chr1:1624434-1624514 1.0000 80 chr2:122369305-122369385 1.0000 80 chr7:157318290-157318370 1.0000 80 chr15:58405728-58405808 1.0000 80 chr8:145159275-145159355 1.0000 80 chr19:12739031-12739111 1.0000 80 chr5:133272235-133272315 1.0000 80 chr3:138487072-138487152 1.0000 80 chr15:22461222-22461302 1.0000 80 chr11:10757415-10757495 1.0000 80 chr2:86850885-86850965 1.0000 80 chr10:72576442-72576522 1.0000 80 chr1:243394323-243394403 1.0000 80 chr22:19706566-19706646 1.0000 80 chr22:18403218-18403298 1.0000 80 chr1:59281005-59281085 1.0000 80 chr19:29105846-29105926 1.0000 80 chr18:9503013-9503093 1.0000 80 chr17:80325958-80326038 1.0000 80 chr16:442055-442135 1.0000 80 chr21:44394685-44394765 1.0000 80 chr11:129872266-12987234 1.0000 80 chr6:148627-148707 1.0000 80 chr18:46478906-46478986 1.0000 80 chr17:549243-549323 1.0000 80 chr12:2113697-2113777 1.0000 80 chr1:1677885-1677965 1.0000 80 chr16:90061469-90061549 1.0000 80 chr19:10025455-10025535 1.0000 80 chr17:58042259-58042339 1.0000 80 chr1:1677676-1677756 1.0000 80 chr6:41288392-41288472 1.0000 80 chr1:146644184-146644264 1.0000 80 chr19:50836751-50836831 1.0000 80 chr16:55786953-55787033 1.0000 80 chr2:237994434-237994514 1.0000 80 chr10:77054862-77054942 1.0000 80 chr8:41296633-41296713 1.0000 80 chr3:170075409-170075489 1.0000 80 chr16:90062332-90062412 1.0000 80 chr2:171943495-171943575 1.0000 80 chr11:125933007-12593308 1.0000 80 chr1:24648737-24648817 1.0000 80 chr1:212662055-212662135 1.0000 80 chr16:20756331-20756411 1.0000 80 chr12:32259583-32259663 1.0000 80 chr16:68298175-68298255 1.0000 80 chr1:859159-859239 1.0000 80 chr15:85458335-85458415 1.0000 80 chr1:247634548-247634628 1.0000 80 chr7:2394022-2394102 1.0000 80 chr19:7717167-7717247 1.0000 80 chr6:109330805-109330885 1.0000 80 chr16:27118706-27118786 1.0000 80 chr3:170075207-170075287 1.0000 80 chr1:877237-877317 1.0000 80 chr4:13486096-13486176 1.0000 80 chr10:29543598-29543678 1.0000 80 chr16:15068680-15068760 1.0000 80 chr12:93985380-93985460 1.0000 80 chr7:75821220-75821300 1.0000 80 chr1:120190737-120190817 1.0000 80 chr22:22823306-22823386 1.0000 80 chr4:26321252-26321332 1.0000 80 chr17:45955115-45955195 1.0000 80 chr19:12060221-12060301 1.0000 80 chr1:11539020-11539100 1.0000 80 chr2:120301868-120301948 1.0000 80 chr1:167832666-167832746 1.0000 80 chr22:22652261-22652341 1.0000 80 chr17:78234051-78234131 1.0000 80 chr16:30669332-30669412 1.0000 80 chr1:209921181-209921261 1.0000 80 chr2:86947252-86947332 1.0000 80 chr12:52430743-52430823 1.0000 80 chr17:42856654-42856734 1.0000 80 chr1:53140573-53140653 1.0000 80 chr12:124457351-12445743 1.0000 80 chr12:121764005-12176408 1.0000 80 chr8:128813052-128813132 1.0000 80 chr19:5453151-5453231 1.0000 80 chr15:63340503-63340583 1.0000 80 chr2:3307531-3307611 1.0000 80 chr1:856553-856633 1.0000 80 chr11:47290750-47290830 1.0000 80 chr20:61505160-61505240 1.0000 80 chr10:65225775-65225855 1.0000 80 chr1:227784057-227784137 1.0000 80 chr9:135865663-135865743 1.0000 80 chrX:47077915-47077995 1.0000 80 chr19:6737396-6737476 1.0000 80 chr1:155658660-155658740 1.0000 80 chr1:95633189-95633269 1.0000 80 chr2:187440162-187440242 1.0000 80 chr11:72525262-72525342 1.0000 80 chr19:44980879-44980959 1.0000 80 chr12:75723974-75724054 1.0000 80 chr1:211307517-211307597 1.0000 80 chr19:41768398-41768478 1.0000 80 chr7:95238186-95238266 1.0000 80 chr3:142569303-142569383 1.0000 80 chr9:138921108-138921188 1.0000 80 chr1:151689424-151689504 1.0000 80 chr6:43027407-43027487 1.0000 80 chr5:171824147-171824227 1.0000 80 chr19:12244021-12244101 1.0000 80 chr9:139527172-139527252 1.0000 80 chr9:136243041-136243121 1.0000 80 chr7:134232413-134232493 1.0000 80 chr8:3040735-3040815 1.0000 80 chr17:17140651-17140731 1.0000 80 chr11:85780952-85781032 1.0000 80 chr8:103666250-103666330 1.0000 80 chr2:25117765-25117845 1.0000 80 chr10:28966181-28966261 1.0000 80 chr10:88471098-88471178 1.0000 80 chr19:7894850-7894930 1.0000 80 chr2:100106798-100106878 1.0000 80 chr10:86284939-86285019 1.0000 80 chr1:154909556-154909636 1.0000 80 chr19:8922166-8922246 1.0000 80 chr1:84464928-84465008 1.0000 80 chr22:19304379-19304459 1.0000 80 chr3:195782770-195782850 1.0000 80 chr10:74663974-74664054 1.0000 80 chr19:7571581-7571661 1.0000 80 chr7:150015280-150015360 1.0000 80 chr16:70471116-70471196 1.0000 80 chr1:168415020-168415100 1.0000 80 chr8:145992959-145993039 1.0000 80 chr16:617163-617243 1.0000 80 chr3:50358996-50359076 1.0000 80 chr10:99094555-99094635 1.0000 80 chr6:43359310-43359390 1.0000 80 chr7:150945844-150945924 1.0000 80 chr9:132404534-132404614 1.0000 80 chr7:102715114-102715194 1.0000 80 chr1:200708224-200708304 1.0000 80 chr1:25665095-25665175 1.0000 80 chr20:2082979-2083059 1.0000 80 chr2:8665825-8665905 1.0000 80 chr6:36628733-36628813 1.0000 80 chr21:19191821-19191901 1.0000 80 chrX:47479303-47479383 1.0000 80 chr12:120933752-12093383 1.0000 80 chr11:329564-329644 1.0000 80 chr11:75479611-75479691 1.0000 80 chr8:105601446-105601526 1.0000 80 chr4:42659384-42659464 1.0000 80 chr8:144635920-144636000 1.0000 80 chr12:68603236-68603316 1.0000 80 chr1:40928914-40928994 1.0000 80 chr17:38497742-38497822 1.0000 80 chr17:73901130-73901210 1.0000 80 chr19:50268853-50268933 1.0000 80 chr11:59383373-59383453 1.0000 80 chr17:56456691-56456771 1.0000 80 chr19:24006886-24006966 1.0000 80 chr7:157283323-157283403 1.0000 80 chr1:151254612-151254692 1.0000 80 chr18:12407817-12407897 1.0000 80 chr7:129226129-129226209 1.0000 80 chr7:151047257-151047337 1.0000 80 chr2:7148231-7148311 1.0000 80 chr9:15511079-15511159 1.0000 80 chr22:19684382-19684462 1.0000 80 chr1:154934304-154934384 1.0000 80 chr20:42219362-42219442 1.0000 80 chr7:107851997-107852077 1.0000 80 chr16:71917920-71918000 1.0000 80 chr5:178157610-178157690 1.0000 80 chr7:92053867-92053947 1.0000 80 chr17:39653140-39653220 1.0000 80 chr21:15095961-15096041 1.0000 80 chr4:139936765-139936845 1.0000 80 chr8:580071-580151 1.0000 80 chr21:45616323-45616403 1.0000 80 chr2:153032493-153032573 1.0000 80 chr19:35531928-35532008 1.0000 80 chr17:20946886-20946966 1.0000 80 chr17:26368567-26368647 1.0000 80 chr1:2187250-2187330 1.0000 80 chr7:154794929-154795009 1.0000 80 chr19:1940684-1940764 1.0000 80 chr19:944277-944357 1.0000 80 chr17:17875957-17876037 1.0000 80 chr16:33619145-33619225 1.0000 80 chr19:48281714-48281794 1.0000 80 chr19:42806705-42806785 1.0000 80 chr15:45027817-45027897 1.0000 80 chr11:842643-842723 1.0000 80 chr3:160472977-160473057 1.0000 80 chr6:51075736-51075816 1.0000 80 chr7:99669222-99669302 1.0000 80 chr20:44486119-44486199 1.0000 80 chr19:2611231-2611311 1.0000 80 chr1:45732074-45732154 1.0000 80 chr1:145209063-145209143 1.0000 80 chr12:31882037-31882117 1.0000 80 chr1:155532850-155532930 1.0000 80 chr21:9968620-9968700 1.0000 80 chr1:204776414-204776494 1.0000 80 chr14:39901495-39901575 1.0000 80 chr2:114361699-114361779 1.0000 80 chr5:173345030-173345110 1.0000 80 chr19:4968758-4968838 1.0000 80 chr1:154909308-154909388 1.0000 80 chr1:151032031-151032111 1.0000 80 chr19:12912734-12912814 1.0000 80 chr1:100409024-100409104 1.0000 80 chr10:5932047-5932127 1.0000 80 chr1:167838942-167839022 1.0000 80 chr1:2159005-2159085 1.0000 80 chr19:10828471-10828551 1.0000 80 chr2:128165708-128165788 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SKIL/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SKIL.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.196 C 0.303 G 0.3 T 0.201 Background letter frequencies (from file dataset with add-one prior applied): A 0.196 C 0.303 G 0.3 T 0.201 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTCTAGAC MEME-1 width = 8 sites = 17 llr = 174 E-value = 7.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCTAGAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::9:9: pos.-specific C ::a1:::a probability G a:::1a:: matrix T :a:9::1: bits 2.4 * 2.1 * * 1.9 * * 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTCTAGAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTAGAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:2611231-2611311 59 1.28e-05 CCTGGCGAGC GTCTAGAC TGCGGTGTTT chr12:68603236-68603316 35 1.28e-05 gagccgacaa gtctagac acattccaga chr2:187440162-187440242 25 1.28e-05 CCCCTAAGCT GTCTAGAC TGATTGCCTG chr1:95633189-95633269 39 1.28e-05 tctggaatgt gtctagac ttgctggctc chr12:121764005-12176408 1 1.28e-05 . GTCTAGAC TTCTGAAAGG chr8:41296633-41296713 49 1.28e-05 TGAATCTAAA GTCTAGAC AGTTTTCAGA chr15:58405728-58405808 58 1.28e-05 gagccagcaa gtctagac acattccaga chr7:129882144-129882224 4 1.28e-05 GTG GTctagac attgagctcc chr6:158826597-158826677 58 1.28e-05 gagccagcaa gtctagac acattccaga chr7:150694265-150694345 50 1.28e-05 GGGTGAGGAA GTCTAGAC CTGCTGCAGG chr15:66994532-66994612 30 1.28e-05 CCGCCAAAGT GTCTAGAC TGGCATATGA chr1:113689541-113689621 12 1.28e-05 CCCACATCCT GTCTAGAC TACTGACTGA chr1:25665095-25665175 50 5.18e-05 AGGCGACGGC GTCCAGAC CCCGCCAAGA chr11:85780952-85781032 63 5.18e-05 GTGATTAAAG GTCCAGAC CATAGAAGGA chr19:41768398-41768478 64 5.18e-05 GGGGCGGGGT GTCTGGAC TGGAACCTC chr12:7126140-7126220 28 5.18e-05 GCAGGCGAGA GTCTGGAc gcgggggggc chr19:18220957-18221037 31 6.49e-05 CAGCCCCCGC GTCTAGTC TGCCGCACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTAGAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2611231-2611311 1.3e-05 58_[+1]_14 chr12:68603236-68603316 1.3e-05 34_[+1]_38 chr2:187440162-187440242 1.3e-05 24_[+1]_48 chr1:95633189-95633269 1.3e-05 38_[+1]_34 chr12:121764005-12176408 1.3e-05 [+1]_72 chr8:41296633-41296713 1.3e-05 48_[+1]_24 chr15:58405728-58405808 1.3e-05 57_[+1]_15 chr7:129882144-129882224 1.3e-05 3_[+1]_69 chr6:158826597-158826677 1.3e-05 57_[+1]_15 chr7:150694265-150694345 1.3e-05 49_[+1]_23 chr15:66994532-66994612 1.3e-05 29_[+1]_43 chr1:113689541-113689621 1.3e-05 11_[+1]_61 chr1:25665095-25665175 5.2e-05 49_[+1]_23 chr11:85780952-85781032 5.2e-05 62_[+1]_10 chr19:41768398-41768478 5.2e-05 63_[+1]_9 chr12:7126140-7126220 5.2e-05 27_[+1]_45 chr19:18220957-18221037 6.5e-05 30_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTAGAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCTAGAC width=8 seqs=17 chr19:2611231-2611311 ( 59) GTCTAGAC 1 chr12:68603236-68603316 ( 35) GTCTAGAC 1 chr2:187440162-187440242 ( 25) GTCTAGAC 1 chr1:95633189-95633269 ( 39) GTCTAGAC 1 chr12:121764005-12176408 ( 1) GTCTAGAC 1 chr8:41296633-41296713 ( 49) GTCTAGAC 1 chr15:58405728-58405808 ( 58) GTCTAGAC 1 chr7:129882144-129882224 ( 4) GTCTAGAC 1 chr6:158826597-158826677 ( 58) GTCTAGAC 1 chr7:150694265-150694345 ( 50) GTCTAGAC 1 chr15:66994532-66994612 ( 30) GTCTAGAC 1 chr1:113689541-113689621 ( 12) GTCTAGAC 1 chr1:25665095-25665175 ( 50) GTCCAGAC 1 chr11:85780952-85781032 ( 63) GTCCAGAC 1 chr19:41768398-41768478 ( 64) GTCTGGAC 1 chr12:7126140-7126220 ( 28) GTCTGGAC 1 chr19:18220957-18221037 ( 31) GTCTAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTAGAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 7.9e-005 -1073 -1073 173 -1073 -1073 -1073 -1073 232 -1073 172 -1073 -1073 -1073 -136 -1073 214 217 -1073 -135 -1073 -1073 -1073 173 -1073 227 -1073 -1073 -177 -1073 172 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTAGAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.9e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.117647 0.000000 0.882353 0.882353 0.000000 0.117647 0.000000 0.000000 0.000000 1.000000 0.000000 0.941176 0.000000 0.000000 0.058824 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCTAGAC MEME-1 regular expression -------------------------------------------------------------------------------- GTCTAGAC -------------------------------------------------------------------------------- Time 4.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGRAR MEME-2 width = 8 sites = 41 llr = 325 E-value = 2.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGRAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a2a25a6 pos.-specific C ::2::2:: probability G a:6:64:4 matrix T ::::1::: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 ** * * Relative 1.4 ** * * Entropy 1.2 ** * ** (11.4 bits) 0.9 ** * ** 0.7 ** * ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAAA consensus AG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGRAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:154909308-154909388 66 7.81e-06 GAGACACGCG GAGAGAAA GGCGGTT chr21:9968620-9968700 3 7.81e-06 CA GAGAGAAA AGCTGGTTCC chr19:12060221-12060301 27 7.81e-06 ACTCATACTG GAGAGAAA CCCTATGAAT chr19:12739031-12739111 31 7.81e-06 ACTCACACTG GAGAGAAA CCCTATGCAT chr19:11943227-11943307 23 7.81e-06 ACTCACACTG GAGAGAAA CCGTATGAAT chr19:11892240-11892320 63 7.81e-06 ACTCACACTG GAGAGAAA CCCTATGGTT chr9:15511079-15511159 56 2.49e-05 CATGCAGATG GAGAGGAA GACGCAAGCG chr19:41768398-41768478 31 2.49e-05 GAGAGAGAGA GAGAGGAA GTCGGACGTG chr19:7083173-7083253 68 2.49e-05 ATTCACACTG GAGAAAAA CCGTA chr7:150945844-150945924 44 6.29e-05 GCACTGATAA GACAGAAA TAGTCCGGCG chr1:243394323-243394403 73 6.29e-05 agtgggaaag gagaagaa chr4:42659384-42659464 40 7.40e-05 ATCTTGCTCA GAAAGGAA AGACTGCTCT chr1:154909556-154909636 44 7.40e-05 AAAACTTTAG GAAAAAAA ATCTCTGGAG chr12:68603236-68603316 16 8.61e-05 tcgatcctgg gagagcaa ggagccgaca chr15:58405728-58405808 32 8.61e-05 tcaatcctgg gagagcaa ggagcaagga chr6:158826597-158826677 25 8.61e-05 tcgatcctgg gagagcaa ggagcaagga chr1:168415020-168415100 30 1.12e-04 ACTGGGAAAT GAGAGGAG TTGCACCAGA chr9:139527172-139527252 37 1.12e-04 TGTCAGGAAG GAGAGGAG GCGCCATCTC chr9:138921108-138921188 73 1.12e-04 cctgcctgca gagaggag chr3:138487072-138487152 46 1.12e-04 gctctcaaca gagaggag gccctggagt chr12:31882037-31882117 65 1.20e-04 ACTCCACAAG GAAAGAAG AGAGCCCC chr10:74663974-74664054 19 1.45e-04 ccttaagagg gacaggaa ttgctcactt chr4:13486096-13486176 50 1.54e-04 GCTAGAAGAA GAAAAGAA GTGTTCGTTC chr7:157318290-157318370 13 1.54e-04 CTCTCGGAGG GAAAAGAA GGCCGTGTGC chr1:61918954-61919034 47 1.62e-04 GACTTGAAAA GAGAACAA TAGACCAGAG chr1:167832666-167832746 16 2.02e-04 ccttaaaagg gacagaag ttgagcatca chr18:9503013-9503093 57 2.02e-04 ctatgtggtt gagataag gactgacata chr2:75089584-75089664 7 2.02e-04 GCTGGG GAGATAAG GCCCATGTAG chr12:121764005-12176408 13 2.19e-04 CTAGACTTCT GAAAGGAG TGGAAACCAC chr17:73901130-73901210 70 2.37e-04 GGGCGGAGCC GAGAGCAG TCA chr7:75821220-75821300 52 2.37e-04 tggggaagga gagagcag agagggcaca chr1:113689541-113689621 28 2.37e-04 ACTACTGACT GAGAGCAG GCCCCTCTTA chr16:70471116-70471196 27 2.50e-04 TGCAGAGGCA GACATAAA CACCCACACA chr10:29543598-29543678 64 2.50e-04 GACAGACTCT GACAAGAA TGCTGATAG chr19:12638401-12638481 61 2.50e-04 CGAAAGGATT GACAAGAA CTGAAGGCTT chr19:6737396-6737476 23 2.84e-04 GGGCTTCTCC GAGACAAA GTTGCGCCAC chr19:7717167-7717247 35 2.84e-04 GTTCTCAGCG GAGACAAA AGTCTGTTGC chr17:17875957-17876037 49 3.27e-04 ACTATTATTG GACAAAAG ACGAGTCAAT chr1:84464928-84465008 57 3.27e-04 AGGTCCTGGG GACAGGAG GGATCAACGG chr5:171824147-171824227 55 3.40e-04 gataagggat gaaataag ctccggtctc chr22:22823306-22823386 62 3.40e-04 gataagggat gaaataag ccctggtctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGRAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:154909308-154909388 7.8e-06 65_[+2]_7 chr21:9968620-9968700 7.8e-06 2_[+2]_70 chr19:12060221-12060301 7.8e-06 26_[+2]_46 chr19:12739031-12739111 7.8e-06 30_[+2]_42 chr19:11943227-11943307 7.8e-06 22_[+2]_50 chr19:11892240-11892320 7.8e-06 62_[+2]_10 chr9:15511079-15511159 2.5e-05 55_[+2]_17 chr19:41768398-41768478 2.5e-05 30_[+2]_42 chr19:7083173-7083253 2.5e-05 67_[+2]_5 chr7:150945844-150945924 6.3e-05 43_[+2]_29 chr1:243394323-243394403 6.3e-05 72_[+2] chr4:42659384-42659464 7.4e-05 39_[+2]_33 chr1:154909556-154909636 7.4e-05 43_[+2]_29 chr12:68603236-68603316 8.6e-05 15_[+2]_57 chr15:58405728-58405808 8.6e-05 31_[+2]_41 chr6:158826597-158826677 8.6e-05 24_[+2]_48 chr1:168415020-168415100 0.00011 29_[+2]_43 chr9:139527172-139527252 0.00011 36_[+2]_36 chr9:138921108-138921188 0.00011 72_[+2] chr3:138487072-138487152 0.00011 45_[+2]_27 chr12:31882037-31882117 0.00012 64_[+2]_8 chr10:74663974-74664054 0.00015 18_[+2]_54 chr4:13486096-13486176 0.00015 49_[+2]_23 chr7:157318290-157318370 0.00015 12_[+2]_60 chr1:61918954-61919034 0.00016 46_[+2]_26 chr1:167832666-167832746 0.0002 15_[+2]_57 chr18:9503013-9503093 0.0002 56_[+2]_16 chr2:75089584-75089664 0.0002 6_[+2]_66 chr12:121764005-12176408 0.00022 12_[+2]_60 chr17:73901130-73901210 0.00024 69_[+2]_3 chr7:75821220-75821300 0.00024 51_[+2]_21 chr1:113689541-113689621 0.00024 27_[+2]_45 chr16:70471116-70471196 0.00025 26_[+2]_46 chr10:29543598-29543678 0.00025 63_[+2]_9 chr19:12638401-12638481 0.00025 60_[+2]_12 chr19:6737396-6737476 0.00028 22_[+2]_50 chr19:7717167-7717247 0.00028 34_[+2]_38 chr17:17875957-17876037 0.00033 48_[+2]_24 chr1:84464928-84465008 0.00033 56_[+2]_16 chr5:171824147-171824227 0.00034 54_[+2]_18 chr22:22823306-22823386 0.00034 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGRAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGRAR width=8 seqs=41 chr1:154909308-154909388 ( 66) GAGAGAAA 1 chr21:9968620-9968700 ( 3) GAGAGAAA 1 chr19:12060221-12060301 ( 27) GAGAGAAA 1 chr19:12739031-12739111 ( 31) GAGAGAAA 1 chr19:11943227-11943307 ( 23) GAGAGAAA 1 chr19:11892240-11892320 ( 63) GAGAGAAA 1 chr9:15511079-15511159 ( 56) GAGAGGAA 1 chr19:41768398-41768478 ( 31) GAGAGGAA 1 chr19:7083173-7083253 ( 68) GAGAAAAA 1 chr7:150945844-150945924 ( 44) GACAGAAA 1 chr1:243394323-243394403 ( 73) GAGAAGAA 1 chr4:42659384-42659464 ( 40) GAAAGGAA 1 chr1:154909556-154909636 ( 44) GAAAAAAA 1 chr12:68603236-68603316 ( 16) GAGAGCAA 1 chr15:58405728-58405808 ( 32) GAGAGCAA 1 chr6:158826597-158826677 ( 25) GAGAGCAA 1 chr1:168415020-168415100 ( 30) GAGAGGAG 1 chr9:139527172-139527252 ( 37) GAGAGGAG 1 chr9:138921108-138921188 ( 73) GAGAGGAG 1 chr3:138487072-138487152 ( 46) GAGAGGAG 1 chr12:31882037-31882117 ( 65) GAAAGAAG 1 chr10:74663974-74664054 ( 19) GACAGGAA 1 chr4:13486096-13486176 ( 50) GAAAAGAA 1 chr7:157318290-157318370 ( 13) GAAAAGAA 1 chr1:61918954-61919034 ( 47) GAGAACAA 1 chr1:167832666-167832746 ( 16) GACAGAAG 1 chr18:9503013-9503093 ( 57) GAGATAAG 1 chr2:75089584-75089664 ( 7) GAGATAAG 1 chr12:121764005-12176408 ( 13) GAAAGGAG 1 chr17:73901130-73901210 ( 70) GAGAGCAG 1 chr7:75821220-75821300 ( 52) GAGAGCAG 1 chr1:113689541-113689621 ( 28) GAGAGCAG 1 chr16:70471116-70471196 ( 27) GACATAAA 1 chr10:29543598-29543678 ( 64) GACAAGAA 1 chr19:12638401-12638481 ( 61) GACAAGAA 1 chr19:6737396-6737476 ( 23) GAGACAAA 1 chr19:7717167-7717247 ( 35) GAGACAAA 1 chr17:17875957-17876037 ( 49) GACAAAAG 1 chr1:84464928-84465008 ( 57) GACAGGAG 1 chr5:171824147-171824227 ( 55) GAAATAAG 1 chr22:22823306-22823386 ( 62) GAAATAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGRAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 2.2e+000 -1200 -1200 174 -1200 235 -1200 -1200 -1200 0 -64 102 -1200 235 -1200 -1200 -1200 17 -263 102 -72 124 -83 28 -1200 235 -1200 -1200 -1200 164 -1200 38 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGRAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 2.2e+000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.195122 0.195122 0.609756 0.000000 1.000000 0.000000 0.000000 0.000000 0.219512 0.048780 0.609756 0.121951 0.463415 0.170732 0.365854 0.000000 1.000000 0.000000 0.000000 0.000000 0.609756 0.000000 0.390244 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGRAR MEME-2 regular expression -------------------------------------------------------------------------------- GAGA[GA][AG]A[AG] -------------------------------------------------------------------------------- Time 8.79 secs. ******************************************************************************** ******************************************************************************** MOTIF ACAGATAA MEME-3 width = 8 sites = 13 llr = 132 E-value = 3.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAGATAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7:a:a:a7 pos.-specific C :a:::3:: probability G :::a:::: matrix T 3::::7:3 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 **** * Relative 1.4 ***** ** Entropy 1.2 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACAGATAA consensus T C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGATAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:86284939-86285019 51 5.28e-06 ccacagcctc acagataa gagcggctat chr8:128813052-128813132 10 5.28e-06 ctgggttag acagataa ggaacagcag chr17:45955115-45955195 22 5.28e-06 TCAAGGCCAG ACAGATAA ACACAGATGG chr8:129162387-129162467 70 5.28e-06 AGTCAGCCAG ACAGATAA TGT chr1:154909308-154909388 34 1.61e-05 TCATGTCCAA ACAGATAT GGGGAGAAAA chr11:59383373-59383453 59 1.61e-05 TTTGATTGGT TCAGATAA AGGCCAATCA chr8:41296633-41296713 62 1.61e-05 TAGACAGTTT TCAGATAA CAACCTTCAG chr1:45732074-45732154 24 2.41e-05 tatacctttt acagacaa tagtggctta chr6:43359310-43359390 49 2.41e-05 cacagaagcc acagacaa accggagacc chr19:29105846-29105926 28 2.41e-05 tccatagatc acagacaa tggtatgaag chr19:12060221-12060301 66 2.96e-05 GGGAAAGCCT TCAGATAT GTGAAGC chr19:11943227-11943307 62 2.96e-05 GGGAAAGCCT TCAGATAT GTGAATAACC chr1:212662055-212662135 20 4.60e-05 TGCTTGGCTC ACAGACAT CTCTGGTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGATAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:86284939-86285019 5.3e-06 50_[+3]_22 chr8:128813052-128813132 5.3e-06 9_[+3]_63 chr17:45955115-45955195 5.3e-06 21_[+3]_51 chr8:129162387-129162467 5.3e-06 69_[+3]_3 chr1:154909308-154909388 1.6e-05 33_[+3]_39 chr11:59383373-59383453 1.6e-05 58_[+3]_14 chr8:41296633-41296713 1.6e-05 61_[+3]_11 chr1:45732074-45732154 2.4e-05 23_[+3]_49 chr6:43359310-43359390 2.4e-05 48_[+3]_24 chr19:29105846-29105926 2.4e-05 27_[+3]_45 chr19:12060221-12060301 3e-05 65_[+3]_7 chr19:11943227-11943307 3e-05 61_[+3]_11 chr1:212662055-212662135 4.6e-05 19_[+3]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGATAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAGATAA width=8 seqs=13 chr10:86284939-86285019 ( 51) ACAGATAA 1 chr8:128813052-128813132 ( 10) ACAGATAA 1 chr17:45955115-45955195 ( 22) ACAGATAA 1 chr8:129162387-129162467 ( 70) ACAGATAA 1 chr1:154909308-154909388 ( 34) ACAGATAT 1 chr11:59383373-59383453 ( 59) TCAGATAA 1 chr8:41296633-41296713 ( 62) TCAGATAA 1 chr1:45732074-45732154 ( 24) ACAGACAA 1 chr6:43359310-43359390 ( 49) ACAGACAA 1 chr19:29105846-29105926 ( 28) ACAGACAA 1 chr19:12060221-12060301 ( 66) TCAGATAT 1 chr19:11943227-11943307 ( 62) TCAGATAT 1 chr1:212662055-212662135 ( 20) ACAGACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGATAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 3.7e+000 182 -1035 -1035 62 -1035 172 -1035 -1035 235 -1035 -1035 -1035 -1035 -1035 173 -1035 235 -1035 -1035 -1035 -1035 2 -1035 179 235 -1035 -1035 -1035 182 -1035 -1035 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGATAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.7e+000 0.692308 0.000000 0.000000 0.307692 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.307692 0.000000 0.692308 1.000000 0.000000 0.000000 0.000000 0.692308 0.000000 0.000000 0.307692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGATAA MEME-3 regular expression -------------------------------------------------------------------------------- [AT]CAGA[TC]A[AT] -------------------------------------------------------------------------------- Time 12.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAATGT MEME-4 width = 8 sites = 7 llr = 79 E-value = 9.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAATGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9::aa::: pos.-specific C :::::::: probability G :aa:::a: matrix T 1::::a:a bits 2.4 *** * 2.1 *** * 1.9 *** * 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGAATGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAATGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:102715114-102715194 41 8.21e-06 CGCAGACCTG AGGAATGT AGTTCTCCTT chr19:12060221-12060301 48 8.21e-06 TATGAATGTA AGGAATGT GGGAAAGCCT chr22:22823306-22823386 26 8.21e-06 tgaccgctct aggaatgt ctgtctttta chr19:12739031-12739111 52 8.21e-06 TATGCATGTA AGGAATGT GGGAAAGCCT chr19:11943227-11943307 44 8.21e-06 TATGAATGTA AGGAATGT GGGAAAGCCT chr8:126175771-126175851 66 8.21e-06 gattgtagat aggaatgt tttgACT chr1:95633189-95633269 31 1.66e-05 ctcctggctc tggaatgt gtctagactt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAATGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:102715114-102715194 8.2e-06 40_[+4]_32 chr19:12060221-12060301 8.2e-06 47_[+4]_25 chr22:22823306-22823386 8.2e-06 25_[+4]_47 chr19:12739031-12739111 8.2e-06 51_[+4]_21 chr19:11943227-11943307 8.2e-06 43_[+4]_29 chr8:126175771-126175851 8.2e-06 65_[+4]_7 chr1:95633189-95633269 1.7e-05 30_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAATGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAATGT width=8 seqs=7 chr7:102715114-102715194 ( 41) AGGAATGT 1 chr19:12060221-12060301 ( 48) AGGAATGT 1 chr22:22823306-22823386 ( 26) AGGAATGT 1 chr19:12739031-12739111 ( 52) AGGAATGT 1 chr19:11943227-11943307 ( 44) AGGAATGT 1 chr8:126175771-126175851 ( 66) AGGAATGT 1 chr1:95633189-95633269 ( 31) TGGAATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAATGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 9.7e+001 213 -945 -945 -49 -945 -945 173 -945 -945 -945 173 -945 235 -945 -945 -945 235 -945 -945 -945 -945 -945 -945 231 -945 -945 173 -945 -945 -945 -945 231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAATGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.7e+001 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAATGT MEME-4 regular expression -------------------------------------------------------------------------------- AGGAATGT -------------------------------------------------------------------------------- Time 16.17 secs. ******************************************************************************** ******************************************************************************** MOTIF TWCATTCA MEME-5 width = 8 sites = 9 llr = 94 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWCATTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :6191::a pos.-specific C ::9:::a: probability G :::::::: matrix T a4:19a:: bits 2.4 * * * 2.1 * * * 1.9 * *** * 1.6 * ***** Relative 1.4 ** ***** Entropy 1.2 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TACATTCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCATTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:99669222-99669302 26 5.61e-06 CCACACTCAT TACATTCA TAGGGTTTCT chr19:8922166-8922246 33 5.61e-06 CCACACTCGT TACATTCA TAGGGTTTTT chr19:12244021-12244101 40 5.61e-06 CCACACTGCT TACATTCA TAGGGTTTCT chr19:11892240-11892320 32 5.61e-06 GTCTTCCAGT TACATTCA ACTACATGAA chr9:135865663-135865743 54 1.14e-05 tgttcagtca ttcattca tttgttcact chr18:46478906-46478986 22 1.14e-05 GCCCTAGCGC TTCATTCA TTGGTTTTGT chr20:2082979-2083059 27 1.87e-05 CCGCTAGGGC TTAATTCA ATGGACTGTT chr15:58405728-58405808 17 2.42e-05 taactcaaga tacaatca atcctgggag chr19:12638401-12638481 37 4.15e-05 CCAGTGTGAG TTCTTTCA TGTCTTCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCATTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:99669222-99669302 5.6e-06 25_[+5]_47 chr19:8922166-8922246 5.6e-06 32_[+5]_40 chr19:12244021-12244101 5.6e-06 39_[+5]_33 chr19:11892240-11892320 5.6e-06 31_[+5]_41 chr9:135865663-135865743 1.1e-05 53_[+5]_19 chr18:46478906-46478986 1.1e-05 21_[+5]_51 chr20:2082979-2083059 1.9e-05 26_[+5]_46 chr15:58405728-58405808 2.4e-05 16_[+5]_56 chr19:12638401-12638481 4.1e-05 36_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCATTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWCATTCA width=8 seqs=9 chr7:99669222-99669302 ( 26) TACATTCA 1 chr19:8922166-8922246 ( 33) TACATTCA 1 chr19:12244021-12244101 ( 40) TACATTCA 1 chr19:11892240-11892320 ( 32) TACATTCA 1 chr9:135865663-135865743 ( 54) TTCATTCA 1 chr18:46478906-46478986 ( 22) TTCATTCA 1 chr20:2082979-2083059 ( 27) TTAATTCA 1 chr15:58405728-58405808 ( 17) TACAATCA 1 chr19:12638401-12638481 ( 37) TTCTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCATTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 3.5e+003 -982 -982 -982 232 150 -982 -982 115 -82 155 -982 -982 218 -982 -982 -85 -82 -982 -982 215 -982 -982 -982 232 -982 172 -982 -982 235 -982 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCATTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.5e+003 0.000000 0.000000 0.000000 1.000000 0.555556 0.000000 0.000000 0.444444 0.111111 0.888889 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCATTCA MEME-5 regular expression -------------------------------------------------------------------------------- T[AT]CATTCA -------------------------------------------------------------------------------- Time 19.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:113689541-113689621 3.81e-04 11_[+1(1.28e-05)]_61 chr15:66994532-66994612 4.99e-03 29_[+1(1.28e-05)]_43 chr7:150694265-150694345 3.40e-02 22_[+1(1.28e-05)]_19_[+1(1.28e-05)]_\ 23 chr6:158826597-158826677 1.91e-04 24_[+2(8.61e-05)]_25_[+1(1.28e-05)]_\ 15 chr7:75277478-75277558 9.87e-01 80 chr21:46898159-46898239 6.47e-01 80 chr17:7744938-7745018 2.06e-01 80 chr9:94262999-94263079 5.18e-01 80 chr2:239113081-239113161 3.21e-01 80 chr12:63307862-63307942 3.79e-01 80 chr2:75089584-75089664 9.05e-03 80 chr7:129882144-129882224 4.36e-03 3_[+1(1.28e-05)]_69 chr21:45848408-45848488 1.00e+00 80 chr1:32966463-32966543 4.37e-01 80 chr7:65715860-65715940 3.40e-01 80 chr19:34818922-34819002 3.89e-01 80 chr17:81153476-81153556 2.28e-01 80 chr11:1439620-1439700 9.97e-01 80 chr1:1624234-1624314 7.12e-01 80 chr3:49271230-49271310 5.28e-01 80 chr1:61918954-61919034 4.54e-02 80 chr19:12638401-12638481 1.02e-03 36_[+5(4.15e-05)]_36 chrX:152992305-152992385 2.55e-01 80 chr19:41104211-41104291 8.27e-01 80 chr16:90061668-90061748 2.32e-01 80 chr19:11892240-11892320 1.62e-04 31_[+5(5.61e-06)]_23_[+2(7.81e-06)]_\ 10 chr19:18220957-18221037 3.09e-01 30_[+1(6.49e-05)]_42 chr19:39453018-39453098 2.23e-01 80 chr15:101626649-10162672 6.47e-01 80 chr8:126175771-126175851 5.99e-04 65_[+4(8.21e-06)]_7 chr19:11943227-11943307 5.48e-06 22_[+2(7.81e-06)]_4_[+4(7.41e-05)]_\ 1_[+4(8.21e-06)]_10_[+3(2.96e-05)]_11 chr14:37667140-37667220 8.54e-01 80 chr19:7083173-7083253 3.14e-02 67_[+2(2.49e-05)]_5 chr8:129162387-129162467 3.14e-03 69_[+3(5.28e-06)]_3 chr12:7126140-7126220 1.86e-01 27_[+1(5.18e-05)]_45 chr1:1624434-1624514 9.93e-01 80 chr2:122369305-122369385 7.30e-01 80 chr7:157318290-157318370 1.53e-01 80 chr15:58405728-58405808 1.29e-05 16_[+5(2.42e-05)]_7_[+2(8.61e-05)]_\ 18_[+1(1.28e-05)]_15 chr8:145159275-145159355 9.29e-01 80 chr19:12739031-12739111 1.64e-04 30_[+2(7.81e-06)]_13_[+4(8.21e-06)]_\ 21 chr5:133272235-133272315 9.90e-01 80 chr3:138487072-138487152 2.32e-02 80 chr15:22461222-22461302 9.99e-01 80 chr11:10757415-10757495 1.00e+00 80 chr2:86850885-86850965 9.96e-01 80 chr10:72576442-72576522 1.48e-01 80 chr1:243394323-243394403 6.82e-03 72_[+2(6.29e-05)] chr22:19706566-19706646 9.43e-01 80 chr22:18403218-18403298 7.07e-01 80 chr1:59281005-59281085 2.15e-01 80 chr19:29105846-29105926 4.87e-02 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************