******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SIN3A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:27921300-27921380 1.0000 80 chr17:73630101-73630181 1.0000 80 chr16:23847265-23847345 1.0000 80 chr1:156251154-156251234 1.0000 80 chr15:40650484-40650564 1.0000 80 chr12:120427685-12042776 1.0000 80 chr3:10052938-10053018 1.0000 80 chr8:144025164-144025244 1.0000 80 chr17:57971127-57971207 1.0000 80 chr1:1270412-1270492 1.0000 80 chr15:85524108-85524188 1.0000 80 chr12:109458732-10945881 1.0000 80 chrX:152735370-152735450 1.0000 80 chr22:51038676-51038756 1.0000 80 chr3:49592127-49592207 1.0000 80 chr16:89894993-89895073 1.0000 80 chr5:176038485-176038565 1.0000 80 chr1:230562417-230562497 1.0000 80 chr12:72332624-72332704 1.0000 80 chr20:33814984-33815064 1.0000 80 chr9:140033695-140033775 1.0000 80 chr17:72667510-72667590 1.0000 80 chr8:145560359-145560439 1.0000 80 chr3:50563576-50563656 1.0000 80 chr11:61891973-61892053 1.0000 80 chr19:55691530-55691610 1.0000 80 chr19:47289473-47289553 1.0000 80 chr3:20083103-20083183 1.0000 80 chr10:86051322-86051402 1.0000 80 chr12:55413724-55413804 1.0000 80 chr7:102988515-102988595 1.0000 80 chr5:141017584-141017664 1.0000 80 chr6:7390436-7390516 1.0000 80 chr15:64162895-64162975 1.0000 80 chr19:11639422-11639502 1.0000 80 chr19:11590485-11590565 1.0000 80 chr1:65775573-65775653 1.0000 80 chr12:2861947-2862027 1.0000 80 chr7:65580542-65580622 1.0000 80 chr8:91095000-91095080 1.0000 80 chr7:77326810-77326890 1.0000 80 chr9:132020869-132020949 1.0000 80 chr15:75280494-75280574 1.0000 80 chr14:106267659-10626773 1.0000 80 chr9:138863967-138864047 1.0000 80 chr9:139890933-139891013 1.0000 80 chr21:33765242-33765322 1.0000 80 chr17:49336673-49336753 1.0000 80 chr6:31627608-31627688 1.0000 80 chr11:66057140-66057220 1.0000 80 chr17:58217283-58217363 1.0000 80 chr14:103995532-10399561 1.0000 80 chr2:232578604-232578684 1.0000 80 chr7:123174584-123174664 1.0000 80 chr1:24070333-24070413 1.0000 80 chrX:153140936-153141016 1.0000 80 chr16:29911373-29911453 1.0000 80 chr20:62284649-62284729 1.0000 80 chr17:74137354-74137434 1.0000 80 chr16:53469482-53469562 1.0000 80 chr10:124671561-12467164 1.0000 80 chr21:46961707-46961787 1.0000 80 chr18:3454000-3454080 1.0000 80 chr19:36370826-36370906 1.0000 80 chr2:73612800-73612880 1.0000 80 chr19:10172750-10172830 1.0000 80 chr12:100594459-10059453 1.0000 80 chr1:38261205-38261285 1.0000 80 chr5:154317290-154317370 1.0000 80 chr1:2121165-2121245 1.0000 80 chr3:48699251-48699331 1.0000 80 chr1:37721154-37721234 1.0000 80 chr20:61174190-61174270 1.0000 80 chr21:34100723-34100803 1.0000 80 chr3:49977895-49977975 1.0000 80 chr8:143464803-143464883 1.0000 80 chr3:47822930-47823010 1.0000 80 chr12:125473585-12547366 1.0000 80 chr2:43449163-43449243 1.0000 80 chr11:118305625-11830570 1.0000 80 chr14:36004545-36004625 1.0000 80 chr8:124553479-124553559 1.0000 80 chr4:184427513-184427593 1.0000 80 chr1:155248107-155248187 1.0000 80 chr19:34012626-34012706 1.0000 80 chr20:20033156-20033236 1.0000 80 chr16:71501826-71501906 1.0000 80 chr19:18344086-18344166 1.0000 80 chr1:38230104-38230184 1.0000 80 chr6:69942898-69942978 1.0000 80 chr12:101673895-10167397 1.0000 80 chr16:88627284-88627364 1.0000 80 chr1:65775967-65776047 1.0000 80 chr12:110151442-11015152 1.0000 80 chr19:10806603-10806683 1.0000 80 chr5:139780351-139780431 1.0000 80 chr20:10200265-10200345 1.0000 80 chr16:3156740-3156820 1.0000 80 chr8:10847834-10847914 1.0000 80 chr14:67826475-67826555 1.0000 80 chr19:58874245-58874325 1.0000 80 chr12:69202730-69202810 1.0000 80 chr16:23464529-23464609 1.0000 80 chr10:75545930-75546010 1.0000 80 chr21:46237567-46237647 1.0000 80 chr22:19166574-19166654 1.0000 80 chr17:1933397-1933477 1.0000 80 chr17:43394851-43394931 1.0000 80 chr1:20512568-20512648 1.0000 80 chr19:35760700-35760780 1.0000 80 chr16:14728051-14728131 1.0000 80 chr15:41708926-41709006 1.0000 80 chr16:89992905-89992985 1.0000 80 chr9:138391681-138391761 1.0000 80 chr7:150759521-150759601 1.0000 80 chr17:8054576-8054656 1.0000 80 chr19:2151836-2151916 1.0000 80 chr16:67219387-67219467 1.0000 80 chr8:41908731-41908811 1.0000 80 chr3:10501981-10502061 1.0000 80 chr9:135282220-135282300 1.0000 80 chr19:13096201-13096281 1.0000 80 chr15:42787713-42787793 1.0000 80 chr15:48623844-48623924 1.0000 80 chr11:65194472-65194552 1.0000 80 chr7:100423085-100423165 1.0000 80 chr12:122710991-12271107 1.0000 80 chr1:179335072-179335152 1.0000 80 chr6:33291301-33291381 1.0000 80 chr6:42013459-42013539 1.0000 80 chr17:25409210-25409290 1.0000 80 chr5:72861552-72861632 1.0000 80 chr1:11919481-11919561 1.0000 80 chr11:46414243-46414323 1.0000 80 chr17:71088781-71088861 1.0000 80 chr15:74284548-74284628 1.0000 80 chr16:88637244-88637324 1.0000 80 chr2:32853167-32853247 1.0000 80 chr16:58718626-58718706 1.0000 80 chr19:44293341-44293421 1.0000 80 chr15:72612129-72612209 1.0000 80 chr5:175815536-175815616 1.0000 80 chr17:7836516-7836596 1.0000 80 chr9:135457574-135457654 1.0000 80 chr1:78245327-78245407 1.0000 80 chr7:1894809-1894889 1.0000 80 chr1:245026262-245026342 1.0000 80 chr1:35390569-35390649 1.0000 80 chr19:7627861-7627941 1.0000 80 chr20:35012571-35012651 1.0000 80 chr7:65541408-65541488 1.0000 80 chr11:59328515-59328595 1.0000 80 chr1:100435944-100436024 1.0000 80 chr7:44645987-44646067 1.0000 80 chr16:89284100-89284180 1.0000 80 chr1:25758757-25758837 1.0000 80 chr2:29118228-29118308 1.0000 80 chr20:3762030-3762110 1.0000 80 chr8:143955890-143955970 1.0000 80 chr17:33469282-33469362 1.0000 80 chr4:8430234-8430314 1.0000 80 chr5:137805112-137805192 1.0000 80 chr1:16302144-16302224 1.0000 80 chr21:47609212-47609292 1.0000 80 chr1:156738221-156738301 1.0000 80 chr16:5083880-5083960 1.0000 80 chr16:53133845-53133925 1.0000 80 chr4:81257038-81257118 1.0000 80 chr11:6589850-6589930 1.0000 80 chr9:139137393-139137473 1.0000 80 chr1:11610873-11610953 1.0000 80 chr5:175224000-175224080 1.0000 80 chr3:158519809-158519889 1.0000 80 chr1:2343946-2344026 1.0000 80 chr19:55728452-55728532 1.0000 80 chr7:105162653-105162733 1.0000 80 chr6:30294899-30294979 1.0000 80 chr1:3585590-3585670 1.0000 80 chr3:9594032-9594112 1.0000 80 chr11:842831-842911 1.0000 80 chr11:65274163-65274243 1.0000 80 chr1:45476944-45477024 1.0000 80 chr10:113943480-11394356 1.0000 80 chr9:126872740-126872820 1.0000 80 chr7:100450186-100450266 1.0000 80 chr12:57984951-57985031 1.0000 80 chr14:62161941-62162021 1.0000 80 chr19:45999726-45999806 1.0000 80 chr11:119252507-11925258 1.0000 80 chr12:53645876-53645956 1.0000 80 chr3:14167094-14167174 1.0000 80 chr1:26633054-26633134 1.0000 80 chr17:80372704-80372784 1.0000 80 chr4:53196-53276 1.0000 80 chr4:110736903-110736983 1.0000 80 chr1:156830620-156830700 1.0000 80 chr6:151187433-151187513 1.0000 80 chr1:160254983-160255063 1.0000 80 chr20:60697334-60697414 1.0000 80 chr19:12807379-12807459 1.0000 80 chr16:75466866-75466946 1.0000 80 chr12:122150673-12215075 1.0000 80 chr8:95961567-95961647 1.0000 80 chr6:17820360-17820440 1.0000 80 chr3:9746055-9746135 1.0000 80 chr19:47200542-47200622 1.0000 80 chr11:71159669-71159749 1.0000 80 chr19:57149503-57149583 1.0000 80 chr4:54232173-54232253 1.0000 80 chr3:194392842-194392922 1.0000 80 chr7:30711625-30711705 1.0000 80 chr3:48229873-48229953 1.0000 80 chr20:30556346-30556426 1.0000 80 chr17:3539985-3540065 1.0000 80 chr10:102747283-10274736 1.0000 80 chr15:75495135-75495215 1.0000 80 chr5:173315303-173315383 1.0000 80 chr1:26799680-26799760 1.0000 80 chr4:57302566-57302646 1.0000 80 chr8:145149746-145149826 1.0000 80 chr1:43148794-43148874 1.0000 80 chr9:127997291-127997371 1.0000 80 chr8:145911204-145911284 1.0000 80 chr3:51975865-51975945 1.0000 80 chr1:11796060-11796140 1.0000 80 chr8:37888475-37888555 1.0000 80 chr9:111696719-111696799 1.0000 80 chr1:229761906-229761986 1.0000 80 chr17:7482663-7482743 1.0000 80 chr19:41903225-41903305 1.0000 80 chr5:36151278-36151358 1.0000 80 chr17:61600467-61600547 1.0000 80 chr4:1404353-1404433 1.0000 80 chr19:46455972-46456052 1.0000 80 chr5:176264774-176264854 1.0000 80 chr17:77290734-77290814 1.0000 80 chr7:100887677-100887757 1.0000 80 chr11:70496578-70496658 1.0000 80 chr4:6785456-6785536 1.0000 80 chr19:7918343-7918423 1.0000 80 chr1:159147231-159147311 1.0000 80 chr2:183989554-183989634 1.0000 80 chr17:45899095-45899175 1.0000 80 chr1:111991806-111991886 1.0000 80 chr8:124053817-124053897 1.0000 80 chr20:48808954-48809034 1.0000 80 chr12:4647614-4647694 1.0000 80 chr1:231298127-231298207 1.0000 80 chr17:26700899-26700979 1.0000 80 chr19:52056571-52056651 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SIN3A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SIN3A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.167 C 0.33 G 0.326 T 0.177 Background letter frequencies (from file dataset with add-one prior applied): A 0.167 C 0.33 G 0.326 T 0.177 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YCAGCWSC MEME-1 width = 8 sites = 132 llr = 903 E-value = 3.1e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCAGCWSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:a::5:1 pos.-specific C 3a::a:45 probability G 2::a::62 matrix T 4::::5:2 bits 2.6 * 2.3 * 2.1 * 1.8 * Relative 1.6 ***** Entropy 1.3 ***** (9.9 bits) 1.0 ***** 0.8 ***** 0.5 ****** 0.3 ******** 0.0 -------- Multilevel TCAGCTGC consensus C AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAGCWSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:100423085-100423165 28 2.00e-05 GCGTCCCAGC TCAGCTGC AGCCACGCTT chr17:8054576-8054656 69 2.00e-05 GAAACCGACG TCAGCTGC TGAG chr2:43449163-43449243 19 2.00e-05 AATCGGACCC TCAGCTGC TACCGCAGCC chr3:10052938-10053018 30 2.00e-05 GGACTGCCTG TCAGCTGC AGCTCGGTAG chr3:20083103-20083183 31 3.88e-05 CCCTGCGCTG TCAGCAGC GGCTTTGTTT chr16:88627284-88627364 16 5.91e-05 TCCCATGAAT TCAGCTCC ATGGACAGCT chr11:70496578-70496658 3 7.81e-05 GT TCAGCACC CTGGAGAGAG chr17:77290734-77290814 5 7.81e-05 GAGT TCAGCACC ACGGACAGCG chr5:176264774-176264854 59 7.81e-05 TGGCACGCTT TCAGCACC GTGGACAGCC chr19:46455972-46456052 18 7.81e-05 GCGAGGAGCT TCAGCACC AAGGACAGCG chr17:61600467-61600547 20 7.81e-05 gcggcTTCTT TCAGCACC AAGGCGTGGA chr20:30556346-30556426 48 7.81e-05 GGAGCCGCCA TCAGCACC AAGGACAGCG chr7:30711625-30711705 12 7.81e-05 ATCGGAACTT TCAGCACC GCGGACAGCA chr19:57149503-57149583 32 7.81e-05 TGTGAATGGT TCAGCACC GCAGACAGCT chr9:126872740-126872820 18 7.81e-05 TAATCCTTTA TCAGCACC GCGGACAGCA chr3:9594032-9594112 16 7.81e-05 CAGCCGAGGA TCAGCACC ATGGAGAGCA chr1:11610873-11610953 72 7.81e-05 TTCAATTGTT TCAGCACC A chr8:143955890-143955970 6 7.81e-05 GTGTT TCAGCACC TAGGACAGAA chr19:7627861-7627941 21 7.81e-05 CCTCGAGCTG TCAGCACC ATGGACAGGG chr1:35390569-35390649 52 7.81e-05 CGAATCCCAC TCAGCACC CGGGACAGTT chr11:46414243-46414323 23 7.81e-05 TGGGGCGGCT TCAGCACC TCGGAGAGCT chr16:89992905-89992985 8 7.81e-05 CGCGAGG TCAGCACC AAGGACAGCG chr20:10200265-10200345 56 7.81e-05 CCTCGACCTT TCAGCACC GGGGACAGCG chr6:69942898-69942978 38 7.81e-05 AGTCCCGGTT TCAGCACC TCCGGCGCTG chr14:36004545-36004625 41 7.81e-05 CCGGGGCGGA TCAGCACC CGGACAGCGC chr11:118305625-11830570 20 7.81e-05 ACGTAGGTTT TCAGCACC AGGAGGCTGT chr1:38261205-38261285 14 7.81e-05 GCGCTCCGCT TCAGCACC GCGGGCGTGG chr10:124671561-12467164 46 7.81e-05 CCCACTCTGT TCAGCACC TTGGCCAGTA chr16:29911373-29911453 27 7.81e-05 AGCGCCCTTT TCAGCACC AGCGGCGCGC chr8:145560359-145560439 15 7.81e-05 gccggcagcT TCAGCACC GCGGCCAGCG chr9:140033695-140033775 18 7.81e-05 CGGCCCCGCT TCAGCACC GCGGACAGCG chr20:33814984-33815064 14 7.81e-05 GGGAGCTGCT TCAGCACC GCGGACAGGG chr12:72332624-72332704 11 7.81e-05 GCATTGCTCT TCAGCACC AGGGTTCTGG chr3:49592127-49592207 20 7.81e-05 AAAGCCGCCT TCAGCACC GGCCGGTGGC chr22:51038676-51038756 7 7.81e-05 CCCCGG TCAGCACC CCGTGGGGAC chr12:109458732-10945881 15 7.81e-05 CCTCCGGTTT TCAGCACC GGGAAGCTGG chr12:120427685-12042776 24 7.81e-05 CGGCCGCGCT TCAGCACC CGCCGAGCCG chr15:40650484-40650564 1 7.81e-05 . TCAGCACC AGCGCCCGGA chr16:53469482-53469562 54 8.89e-05 GGATTGTTTA TCAGCTGT TTGACTGTGT chr7:123174584-123174664 40 8.89e-05 CGCCGCGTTC TCAGCTGT TGGTCGTATC chr17:57971127-57971207 37 8.89e-05 TAGGAAGCGC TCAGCTGT TAGAAGTGAC chr4:53196-53276 57 1.20e-04 GTTTAGGGCT TCAGCTCT CTGCGTTCTC chr14:62161941-62162021 54 1.20e-04 CAGCTGTGCC TCAGCTGA CCGCCTCCTG chr1:155248107-155248187 60 1.20e-04 GGTCCAGACC TCAGCTCT GGTCGCTGTC chr19:47289473-47289553 45 1.20e-04 TGCTACAGCC TCAGCTGA GTGTCTGCGT chr4:1404353-1404433 6 1.59e-04 CAGCT TCAGCACT GCGAACAGCG chr5:175224000-175224080 36 1.59e-04 CCCTATCGGG TCAGCACT GCAGCGGCGG chr11:6589850-6589930 22 1.59e-04 CTGTGCTGAC TCAGCACT CTCCTTCCTC chr16:53133845-53133925 31 1.59e-04 GGGAGTTGAG TCAGCTGG GAAAGCTGAC chr1:78245327-78245407 42 1.59e-04 GCGCCAGGCA TCAGCTGG GAAGCTGGCG chr19:35760700-35760780 38 1.59e-04 TGACTGATGG TCAGCTGG ACGGCCAGGG chr14:67826475-67826555 35 1.59e-04 TCTACGGGAG TCAGCTGG TTGTGTCACT chr1:38230104-38230184 26 1.59e-04 CGCTCAGAAT TCAGCACT GCGGACAGTT chr7:77326810-77326890 34 1.59e-04 AGCACTGGCG TCAGCTGG AAGCTACCAG chr3:50563576-50563656 18 1.59e-04 AGGCACTGAC TCAGCAGA CACGTGGCTG chr11:842831-842911 36 2.07e-04 CGCTTGACTG ACAGCTGC GCGGCGGGAG chr6:42013459-42013539 50 2.07e-04 CATCTACTGC TCAGCAGG GAAAGGGAAA chr19:13096201-13096281 55 2.07e-04 CGTGGCTAGC ACAGCTGC AGGGACATGC chr3:48229873-48229953 39 2.92e-04 CTCAGTGGGG CCAGCTGC TGCCCCGCCC chr12:57984951-57985031 33 2.92e-04 CGGTCACGTG ACAGCAGC GCAGGTGAGC chr10:113943480-11394356 28 2.92e-04 CCGGCCAATG CCAGCTGC AGTGGCGCAC chr15:42787713-42787793 50 2.92e-04 GTGATTGGCT CCAGCTGC AGGGGTGTGT chr18:3454000-3454080 6 2.92e-04 TCCTG ACAGCAGC AAACGTGGTT chr14:106267659-10626773 24 2.92e-04 AAAACCACGG ACAGCAGC TTGGACACCA chr17:73630101-73630181 43 2.92e-04 CCAGGCAGAG ACAGCAGC TGGCTGTCAG chr6:17820360-17820440 35 3.65e-04 TGAAACTGCA CCAGCAGC TGTCATGACA chr19:45999726-45999806 27 3.65e-04 GAGCCAGGGG ACAGCTCC CCGCGCGCGT chr5:175815536-175815616 21 3.65e-04 GACCACCGCA CCAGCAGC TCAAACACGC chr6:33291301-33291381 26 3.65e-04 TTGCCGCTGT CCAGCAGC TGTTTCTACT chr12:122710991-12271107 21 3.65e-04 GTCCAGCCGG CCAGCAGC AGCGCCCCGA chr20:61174190-61174270 29 3.65e-04 CCGCTTGTGG ACAGCTCC CAGCAGCTGC chr5:141017584-141017664 46 3.65e-04 CCTGGCCCGG ACAGCTCC CTGGTTGGGT chrX:152735370-152735450 32 3.65e-04 GGGACCTGGG ACAGCTCC CTAACCTCGT chr19:11590485-11590565 63 4.21e-04 CGGGAGCTGA CCAGCTCC GTGGCTGCTG chr5:176038485-176038565 47 4.21e-04 AGAACCACGG ACAGCACC ACACCAGGGC chr9:139137393-139137473 58 4.56e-04 CTGCCGCTGT CCAGCACC CACACGGCGT chr1:65775573-65775653 28 4.56e-04 CCGGACCGCG CCAGCACC ATGGACAGCT chr19:11639422-11639502 17 4.56e-04 tgctgtgtct ccagcacc aaggacagtg chr1:1270412-1270492 61 4.56e-04 GACCCCGGAG CCAGCACC ATGGACAGAA chr17:45899095-45899175 42 5.33e-04 AGCAGTGGCA GCAGCTGC TGCAGGAACC chr19:7918343-7918423 46 5.33e-04 ACCTGTTAGG CCAGCTGT GAGCGCCTCC chr1:156830620-156830700 46 5.33e-04 GGGAGGCCTG GCAGCTGC AGCTGGGAGC chr17:7836516-7836596 43 5.33e-04 CGGCCCGAGC CCAGCTGT ATTTACCCTC chr12:69202730-69202810 62 5.33e-04 ATGCATTTTC CCAGCTGT GTTCAGTGGC chr1:65775967-65776047 12 5.33e-04 GCTGGGAGAG GCAGCTGC TTTCACTGCC chr3:49977895-49977975 28 5.33e-04 CGCGGAGCGG CCAGCTGT GAGGCTGGGG chr1:24070333-24070413 35 5.33e-04 GCGTCCCGAG CCAGCTGT TTCCTGCGGG chr17:58217283-58217363 18 5.33e-04 GCAGGCTTCC GCAGCTGC TTCCAGGGTG chr15:75280494-75280574 20 5.33e-04 CCCAGCACTT CCAGCTGT GGACAGAGCC chr4:57302566-57302646 26 6.06e-04 CCGCCTCCCT GCAGCAGC GCCTCTAGGC chr8:95961567-95961647 38 6.06e-04 AGCGCTCGCA ACAGCTGA TCGgccgctc chr16:89284100-89284180 18 6.06e-04 CGCCTGTCTT ACAGCTGA TCCGGTTCTT chr16:23847265-23847345 48 6.06e-04 TGGACGAGCG GCAGCAGC TGGGCGAGTG chr12:4647614-4647694 28 7.20e-04 CACTGGGAAA CCAGCTGA CTTGCCGACA chr4:6785456-6785536 20 7.20e-04 GGCGAAGGTT ACAGCTGG AGCTAGGAGT chr5:36151278-36151358 14 7.20e-04 ACACACGTAG CCAGCTGA GCGACAGCAA chr11:71159669-71159749 15 7.20e-04 CTTCGGGATC CCAGCTGA CCAGCTGGGG chr12:122150673-12215075 15 7.20e-04 CTGCGCAGGA ACAGCTGG TGCCTCCGAG chr1:45476944-45477024 32 7.20e-04 TGCCCGGGGA ACAGCTGG CGCGACCGCG chr7:44645987-44646067 42 7.20e-04 AGCGGAGCAA ACAGCTGG GCTCCAGCTG chr19:2151836-2151916 12 7.20e-04 GACCCTCCCA CCAGCTGA CAGGTGTGAG chr8:143464803-143464883 31 7.20e-04 GGCCCCAAGC ACAGCTGG CCAGGCGCTG chr21:33765242-33765322 45 7.20e-04 ACTGGCACAG ACAGCAGA CACGCGCTTC chr9:139890933-139891013 38 7.20e-04 ACCTTGACAA ACAGCTGG AGCTTGGTCT chr11:61891973-61892053 50 7.20e-04 GCCCCCGCCC CCAGCTGA GCAGCATTTT chr1:230562417-230562497 34 7.20e-04 CAGTCCGCGT GCAGCTCC AGGGAGCTGT chr2:183989554-183989634 14 8.56e-04 TGCTGGATTC CCAGCTGG TTGCTGGTCC chr5:173315303-173315383 31 8.56e-04 CTGGGTCTTT CCAGCTGG TTGTCATTTC chr20:60697334-60697414 43 8.56e-04 GGCCCGCCCC CCAGCTGG CGGCCCGGCC chr1:16302144-16302224 54 8.56e-04 GGAGATGCTA CCAGCTGG GGTGTCATCC chr20:3762030-3762110 38 8.56e-04 GACTCACGTC CCAGCTGG GAGCGGCCAT chr7:1894809-1894889 33 8.56e-04 ctctttggtt ccagctgg cggtgtctct chr21:46237567-46237647 39 8.56e-04 GCGCGCCTTC CCAGCTGG GGAGGAGACG chr12:125473585-12547366 20 8.56e-04 AGCGGCCGGA CCAGCAGA GCAATCCGAA chr1:2121165-2121245 42 8.56e-04 CTGTCAACAT CCAGCTGG GTCAGCCTGC chr6:7390436-7390516 19 8.56e-04 TTTCTGCATC CCAGCTGG GTTTTTCTCC chr8:144025164-144025244 21 8.56e-04 CAATCACAAT GCAGCACC CTGGACAGCG chr1:20512568-20512648 29 9.37e-04 GGGTTGTTTA CCAGCAGG ACAGAGCCCG chr1:26799680-26799760 30 1.03e-03 TGCGCCATCT GCAGCTGT TGCTCCTGCC chr11:59328515-59328595 18 1.03e-03 CCCTGTACAC GCAGCTGT TTTCTTCTGA chr7:100887677-100887757 14 1.12e-03 CGCTCCCGGA GCAGCTGA CCCCGGCGGC chr3:51975865-51975945 61 1.12e-03 AACTCACGTG GCAGCTGA ACCCTCCCAG chr1:25758757-25758837 56 1.12e-03 CTTTCCACAA GCAGCTGA CTGATGTAAA chr8:124553479-124553559 10 1.12e-03 CAGCCGGCC GCAGCTCT TTGTTGCCGG chr1:231298127-231298207 5 1.20e-03 GCAG GCAGCTGG AGCCCCACCT chr19:34012626-34012706 13 1.20e-03 CGAGGGAGGC GCAGCACT CACCCGGTGG chr1:156251154-156251234 20 1.20e-03 TGTCTGACAG GCAGCACT GACACTCGGC chr14:103995532-10399561 49 1.25e-03 TGGAGCCCCG GCAGCAGG AGCGTCGCAG chr19:12807379-12807459 60 1.34e-03 TGTCTCCTAG GCAGCACG AGGGCACTTC chr15:48623844-48623924 15 1.34e-03 GCCGCGCCGC GCAGCACG GGATTCCCCG chr3:158519809-158519889 23 1.40e-03 GGGCGTCACG TGAGCTCC CGGAGTCATG chr1:159147231-159147311 8 1.46e-03 TGTGCTT TGAGCTCT CCATGGTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAGCWSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:100423085-100423165 2e-05 27_[+1]_45 chr17:8054576-8054656 2e-05 68_[+1]_4 chr2:43449163-43449243 2e-05 18_[+1]_54 chr3:10052938-10053018 2e-05 29_[+1]_43 chr3:20083103-20083183 3.9e-05 30_[+1]_42 chr16:88627284-88627364 5.9e-05 15_[+1]_57 chr11:70496578-70496658 7.8e-05 2_[+1]_70 chr17:77290734-77290814 7.8e-05 4_[+1]_68 chr5:176264774-176264854 7.8e-05 58_[+1]_14 chr19:46455972-46456052 7.8e-05 17_[+1]_55 chr17:61600467-61600547 7.8e-05 19_[+1]_53 chr20:30556346-30556426 7.8e-05 47_[+1]_25 chr7:30711625-30711705 7.8e-05 11_[+1]_61 chr19:57149503-57149583 7.8e-05 31_[+1]_41 chr9:126872740-126872820 7.8e-05 17_[+1]_55 chr3:9594032-9594112 7.8e-05 15_[+1]_57 chr1:11610873-11610953 7.8e-05 71_[+1]_1 chr8:143955890-143955970 7.8e-05 5_[+1]_67 chr19:7627861-7627941 7.8e-05 20_[+1]_52 chr1:35390569-35390649 7.8e-05 51_[+1]_21 chr11:46414243-46414323 7.8e-05 22_[+1]_50 chr16:89992905-89992985 7.8e-05 7_[+1]_65 chr20:10200265-10200345 7.8e-05 55_[+1]_17 chr6:69942898-69942978 7.8e-05 37_[+1]_35 chr14:36004545-36004625 7.8e-05 40_[+1]_32 chr11:118305625-11830570 7.8e-05 19_[+1]_53 chr1:38261205-38261285 7.8e-05 13_[+1]_59 chr10:124671561-12467164 7.8e-05 45_[+1]_27 chr16:29911373-29911453 7.8e-05 26_[+1]_46 chr8:145560359-145560439 7.8e-05 14_[+1]_58 chr9:140033695-140033775 7.8e-05 17_[+1]_55 chr20:33814984-33815064 7.8e-05 13_[+1]_59 chr12:72332624-72332704 7.8e-05 10_[+1]_62 chr3:49592127-49592207 7.8e-05 19_[+1]_53 chr22:51038676-51038756 7.8e-05 6_[+1]_66 chr12:109458732-10945881 7.8e-05 14_[+1]_58 chr12:120427685-12042776 7.8e-05 23_[+1]_49 chr15:40650484-40650564 7.8e-05 [+1]_72 chr16:53469482-53469562 8.9e-05 53_[+1]_19 chr7:123174584-123174664 8.9e-05 39_[+1]_33 chr17:57971127-57971207 8.9e-05 36_[+1]_36 chr4:53196-53276 0.00012 56_[+1]_16 chr14:62161941-62162021 0.00012 53_[+1]_19 chr1:155248107-155248187 0.00012 59_[+1]_13 chr19:47289473-47289553 0.00012 44_[+1]_28 chr4:1404353-1404433 0.00016 5_[+1]_67 chr5:175224000-175224080 0.00016 35_[+1]_37 chr11:6589850-6589930 0.00016 21_[+1]_51 chr16:53133845-53133925 0.00016 30_[+1]_42 chr1:78245327-78245407 0.00016 41_[+1]_31 chr19:35760700-35760780 0.00016 37_[+1]_35 chr14:67826475-67826555 0.00016 34_[+1]_38 chr1:38230104-38230184 0.00016 25_[+1]_47 chr7:77326810-77326890 0.00016 33_[+1]_39 chr3:50563576-50563656 0.00016 17_[+1]_55 chr11:842831-842911 0.00021 35_[+1]_37 chr6:42013459-42013539 0.00021 49_[+1]_23 chr19:13096201-13096281 0.00021 54_[+1]_18 chr3:48229873-48229953 0.00029 38_[+1]_34 chr12:57984951-57985031 0.00029 32_[+1]_40 chr10:113943480-11394356 0.00029 27_[+1]_45 chr15:42787713-42787793 0.00029 49_[+1]_23 chr18:3454000-3454080 0.00029 5_[+1]_67 chr14:106267659-10626773 0.00029 23_[+1]_49 chr17:73630101-73630181 0.00029 42_[+1]_30 chr6:17820360-17820440 0.00036 34_[+1]_38 chr19:45999726-45999806 0.00036 26_[+1]_46 chr5:175815536-175815616 0.00036 20_[+1]_52 chr6:33291301-33291381 0.00036 25_[+1]_47 chr12:122710991-12271107 0.00036 20_[+1]_52 chr20:61174190-61174270 0.00036 28_[+1]_44 chr5:141017584-141017664 0.00036 45_[+1]_27 chrX:152735370-152735450 0.00036 31_[+1]_41 chr19:11590485-11590565 0.00042 62_[+1]_10 chr5:176038485-176038565 0.00042 46_[+1]_26 chr9:139137393-139137473 0.00046 57_[+1]_15 chr1:65775573-65775653 0.00046 27_[+1]_45 chr19:11639422-11639502 0.00046 16_[+1]_56 chr1:1270412-1270492 0.00046 60_[+1]_12 chr17:45899095-45899175 0.00053 41_[+1]_31 chr19:7918343-7918423 0.00053 45_[+1]_27 chr1:156830620-156830700 0.00053 45_[+1]_27 chr17:7836516-7836596 0.00053 42_[+1]_30 chr12:69202730-69202810 0.00053 61_[+1]_11 chr1:65775967-65776047 0.00053 11_[+1]_61 chr3:49977895-49977975 0.00053 27_[+1]_45 chr1:24070333-24070413 0.00053 34_[+1]_38 chr17:58217283-58217363 0.00053 17_[+1]_55 chr15:75280494-75280574 0.00053 19_[+1]_53 chr4:57302566-57302646 0.00061 25_[+1]_47 chr8:95961567-95961647 0.00061 37_[+1]_35 chr16:89284100-89284180 0.00061 17_[+1]_55 chr16:23847265-23847345 0.00061 47_[+1]_25 chr12:4647614-4647694 0.00072 27_[+1]_45 chr4:6785456-6785536 0.00072 19_[+1]_53 chr5:36151278-36151358 0.00072 13_[+1]_59 chr11:71159669-71159749 0.00072 14_[+1]_58 chr12:122150673-12215075 0.00072 14_[+1]_58 chr1:45476944-45477024 0.00072 31_[+1]_41 chr7:44645987-44646067 0.00072 41_[+1]_31 chr19:2151836-2151916 0.00072 11_[+1]_61 chr8:143464803-143464883 0.00072 30_[+1]_42 chr21:33765242-33765322 0.00072 44_[+1]_28 chr9:139890933-139891013 0.00072 37_[+1]_35 chr11:61891973-61892053 0.00072 49_[+1]_23 chr1:230562417-230562497 0.00072 33_[+1]_39 chr2:183989554-183989634 0.00086 13_[+1]_59 chr5:173315303-173315383 0.00086 30_[+1]_42 chr20:60697334-60697414 0.00086 42_[+1]_30 chr1:16302144-16302224 0.00086 53_[+1]_19 chr20:3762030-3762110 0.00086 37_[+1]_35 chr7:1894809-1894889 0.00086 32_[+1]_40 chr21:46237567-46237647 0.00086 38_[+1]_34 chr12:125473585-12547366 0.00086 19_[+1]_53 chr1:2121165-2121245 0.00086 41_[+1]_31 chr6:7390436-7390516 0.00086 18_[+1]_54 chr8:144025164-144025244 0.00086 20_[+1]_52 chr1:20512568-20512648 0.00094 28_[+1]_44 chr1:26799680-26799760 0.001 29_[+1]_43 chr11:59328515-59328595 0.001 17_[+1]_55 chr7:100887677-100887757 0.0011 13_[+1]_59 chr3:51975865-51975945 0.0011 60_[+1]_12 chr1:25758757-25758837 0.0011 55_[+1]_17 chr8:124553479-124553559 0.0011 9_[+1]_63 chr1:231298127-231298207 0.0012 4_[+1]_68 chr19:34012626-34012706 0.0012 12_[+1]_60 chr1:156251154-156251234 0.0012 19_[+1]_53 chr14:103995532-10399561 0.0012 48_[+1]_24 chr19:12807379-12807459 0.0013 59_[+1]_13 chr15:48623844-48623924 0.0013 14_[+1]_58 chr3:158519809-158519889 0.0014 22_[+1]_50 chr1:159147231-159147311 0.0015 7_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAGCWSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCAGCWSC width=8 seqs=132 chr7:100423085-100423165 ( 28) TCAGCTGC 1 chr17:8054576-8054656 ( 69) TCAGCTGC 1 chr2:43449163-43449243 ( 19) TCAGCTGC 1 chr3:10052938-10053018 ( 30) TCAGCTGC 1 chr3:20083103-20083183 ( 31) TCAGCAGC 1 chr16:88627284-88627364 ( 16) TCAGCTCC 1 chr11:70496578-70496658 ( 3) TCAGCACC 1 chr17:77290734-77290814 ( 5) TCAGCACC 1 chr5:176264774-176264854 ( 59) TCAGCACC 1 chr19:46455972-46456052 ( 18) TCAGCACC 1 chr17:61600467-61600547 ( 20) TCAGCACC 1 chr20:30556346-30556426 ( 48) TCAGCACC 1 chr7:30711625-30711705 ( 12) TCAGCACC 1 chr19:57149503-57149583 ( 32) TCAGCACC 1 chr9:126872740-126872820 ( 18) TCAGCACC 1 chr3:9594032-9594112 ( 16) TCAGCACC 1 chr1:11610873-11610953 ( 72) TCAGCACC 1 chr8:143955890-143955970 ( 6) TCAGCACC 1 chr19:7627861-7627941 ( 21) TCAGCACC 1 chr1:35390569-35390649 ( 52) TCAGCACC 1 chr11:46414243-46414323 ( 23) TCAGCACC 1 chr16:89992905-89992985 ( 8) TCAGCACC 1 chr20:10200265-10200345 ( 56) TCAGCACC 1 chr6:69942898-69942978 ( 38) TCAGCACC 1 chr14:36004545-36004625 ( 41) TCAGCACC 1 chr11:118305625-11830570 ( 20) TCAGCACC 1 chr1:38261205-38261285 ( 14) TCAGCACC 1 chr10:124671561-12467164 ( 46) TCAGCACC 1 chr16:29911373-29911453 ( 27) TCAGCACC 1 chr8:145560359-145560439 ( 15) TCAGCACC 1 chr9:140033695-140033775 ( 18) TCAGCACC 1 chr20:33814984-33815064 ( 14) TCAGCACC 1 chr12:72332624-72332704 ( 11) TCAGCACC 1 chr3:49592127-49592207 ( 20) TCAGCACC 1 chr22:51038676-51038756 ( 7) TCAGCACC 1 chr12:109458732-10945881 ( 15) TCAGCACC 1 chr12:120427685-12042776 ( 24) TCAGCACC 1 chr15:40650484-40650564 ( 1) TCAGCACC 1 chr16:53469482-53469562 ( 54) TCAGCTGT 1 chr7:123174584-123174664 ( 40) TCAGCTGT 1 chr17:57971127-57971207 ( 37) TCAGCTGT 1 chr4:53196-53276 ( 57) TCAGCTCT 1 chr14:62161941-62162021 ( 54) TCAGCTGA 1 chr1:155248107-155248187 ( 60) TCAGCTCT 1 chr19:47289473-47289553 ( 45) TCAGCTGA 1 chr4:1404353-1404433 ( 6) TCAGCACT 1 chr5:175224000-175224080 ( 36) TCAGCACT 1 chr11:6589850-6589930 ( 22) TCAGCACT 1 chr16:53133845-53133925 ( 31) TCAGCTGG 1 chr1:78245327-78245407 ( 42) TCAGCTGG 1 chr19:35760700-35760780 ( 38) TCAGCTGG 1 chr14:67826475-67826555 ( 35) TCAGCTGG 1 chr1:38230104-38230184 ( 26) TCAGCACT 1 chr7:77326810-77326890 ( 34) TCAGCTGG 1 chr3:50563576-50563656 ( 18) TCAGCAGA 1 chr11:842831-842911 ( 36) ACAGCTGC 1 chr6:42013459-42013539 ( 50) TCAGCAGG 1 chr19:13096201-13096281 ( 55) ACAGCTGC 1 chr3:48229873-48229953 ( 39) CCAGCTGC 1 chr12:57984951-57985031 ( 33) ACAGCAGC 1 chr10:113943480-11394356 ( 28) CCAGCTGC 1 chr15:42787713-42787793 ( 50) CCAGCTGC 1 chr18:3454000-3454080 ( 6) ACAGCAGC 1 chr14:106267659-10626773 ( 24) ACAGCAGC 1 chr17:73630101-73630181 ( 43) ACAGCAGC 1 chr6:17820360-17820440 ( 35) CCAGCAGC 1 chr19:45999726-45999806 ( 27) ACAGCTCC 1 chr5:175815536-175815616 ( 21) CCAGCAGC 1 chr6:33291301-33291381 ( 26) CCAGCAGC 1 chr12:122710991-12271107 ( 21) CCAGCAGC 1 chr20:61174190-61174270 ( 29) ACAGCTCC 1 chr5:141017584-141017664 ( 46) ACAGCTCC 1 chrX:152735370-152735450 ( 32) ACAGCTCC 1 chr19:11590485-11590565 ( 63) CCAGCTCC 1 chr5:176038485-176038565 ( 47) ACAGCACC 1 chr9:139137393-139137473 ( 58) CCAGCACC 1 chr1:65775573-65775653 ( 28) CCAGCACC 1 chr19:11639422-11639502 ( 17) CCAGCACC 1 chr1:1270412-1270492 ( 61) CCAGCACC 1 chr17:45899095-45899175 ( 42) GCAGCTGC 1 chr19:7918343-7918423 ( 46) CCAGCTGT 1 chr1:156830620-156830700 ( 46) GCAGCTGC 1 chr17:7836516-7836596 ( 43) CCAGCTGT 1 chr12:69202730-69202810 ( 62) CCAGCTGT 1 chr1:65775967-65776047 ( 12) GCAGCTGC 1 chr3:49977895-49977975 ( 28) CCAGCTGT 1 chr1:24070333-24070413 ( 35) CCAGCTGT 1 chr17:58217283-58217363 ( 18) GCAGCTGC 1 chr15:75280494-75280574 ( 20) CCAGCTGT 1 chr4:57302566-57302646 ( 26) GCAGCAGC 1 chr8:95961567-95961647 ( 38) ACAGCTGA 1 chr16:89284100-89284180 ( 18) ACAGCTGA 1 chr16:23847265-23847345 ( 48) GCAGCAGC 1 chr12:4647614-4647694 ( 28) CCAGCTGA 1 chr4:6785456-6785536 ( 20) ACAGCTGG 1 chr5:36151278-36151358 ( 14) CCAGCTGA 1 chr11:71159669-71159749 ( 15) CCAGCTGA 1 chr12:122150673-12215075 ( 15) ACAGCTGG 1 chr1:45476944-45477024 ( 32) ACAGCTGG 1 chr7:44645987-44646067 ( 42) ACAGCTGG 1 chr19:2151836-2151916 ( 12) CCAGCTGA 1 chr8:143464803-143464883 ( 31) ACAGCTGG 1 chr21:33765242-33765322 ( 45) ACAGCAGA 1 chr9:139890933-139891013 ( 38) ACAGCTGG 1 chr11:61891973-61892053 ( 50) CCAGCTGA 1 chr1:230562417-230562497 ( 34) GCAGCTCC 1 chr2:183989554-183989634 ( 14) CCAGCTGG 1 chr5:173315303-173315383 ( 31) CCAGCTGG 1 chr20:60697334-60697414 ( 43) CCAGCTGG 1 chr1:16302144-16302224 ( 54) CCAGCTGG 1 chr20:3762030-3762110 ( 38) CCAGCTGG 1 chr7:1894809-1894889 ( 33) CCAGCTGG 1 chr21:46237567-46237647 ( 39) CCAGCTGG 1 chr12:125473585-12547366 ( 20) CCAGCAGA 1 chr1:2121165-2121245 ( 42) CCAGCTGG 1 chr6:7390436-7390516 ( 19) CCAGCTGG 1 chr8:144025164-144025244 ( 21) GCAGCACC 1 chr1:20512568-20512648 ( 29) CCAGCAGG 1 chr1:26799680-26799760 ( 30) GCAGCTGT 1 chr11:59328515-59328595 ( 18) GCAGCTGT 1 chr7:100887677-100887757 ( 14) GCAGCTGA 1 chr3:51975865-51975945 ( 61) GCAGCTGA 1 chr1:25758757-25758837 ( 56) GCAGCTGA 1 chr8:124553479-124553559 ( 10) GCAGCTCT 1 chr1:231298127-231298207 ( 5) GCAGCTGG 1 chr19:34012626-34012706 ( 13) GCAGCACT 1 chr1:156251154-156251234 ( 20) GCAGCACT 1 chr14:103995532-10399561 ( 49) GCAGCAGG 1 chr19:12807379-12807459 ( 60) GCAGCACG 1 chr15:48623844-48623924 ( 15) GCAGCACG 1 chr3:158519809-158519889 ( 23) TGAGCTCC 1 chr1:159147231-159147311 ( 8) TGAGCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAGCWSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.87148 E= 3.1e-049 -14 -36 -111 131 -1369 158 -443 -1369 259 -1369 -1369 -1369 -1369 -1369 162 -1369 -1369 160 -1369 -1369 152 -1369 -1369 156 -1369 41 78 -1369 -55 68 -73 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAGCWSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 132 E= 3.1e-049 0.151515 0.257576 0.151515 0.439394 0.000000 0.984848 0.015152 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.477273 0.000000 0.000000 0.522727 0.000000 0.439394 0.560606 0.000000 0.113636 0.530303 0.196970 0.159091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAGCWSC MEME-1 regular expression -------------------------------------------------------------------------------- [TC]CAGC[TA][GC]C -------------------------------------------------------------------------------- Time 4.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCTGAA MEME-2 width = 8 sites = 32 llr = 317 E-value = 8.1e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCTGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::a7 pos.-specific C :::a:::2 probability G a:9::a:: matrix T :a::a::2 bits 2.6 * * * 2.3 * * * 2.1 * * * 1.8 * * * Relative 1.6 ** **** Entropy 1.3 ******* (14.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGCTGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:52056571-52056651 61 9.99e-06 GCTGTCCCTG GTGCTGAA GCAGGACTGT chr20:35012571-35012651 43 9.99e-06 GTTGTCCGTG GTGCTGAA GATAGAGAGG chr15:72612129-72612209 22 9.99e-06 GCTGTCCGCG GTGCTGAA ACCCAGGCGC chr8:10847834-10847914 11 9.99e-06 ACTGGCCGTG GTGCTGAA AAGCCTGCTC chr19:10806603-10806683 43 9.99e-06 GCTGTCCACT GTGCTGAA GCCGCACACC chr16:88627284-88627364 57 9.99e-06 CCTCCATGTG GTGCTGAA ATCACCCCAA chr19:18344086-18344166 49 9.99e-06 CGCGCCGGAG GTGCTGAA GCGGTAGAAG chr1:37721154-37721234 58 9.99e-06 GCTGTCCGTG GTGCTGAA CCCAAGCTAT chr3:48699251-48699331 72 9.99e-06 GCCGTGCGTG GTGCTGAA T chr19:36370826-36370906 64 9.99e-06 GCTGTCCGCG GTGCTGAA CTGGCCGCG chrX:153140936-153141016 34 9.99e-06 GCTGTCCCTG GTGCTGAA ATCGCCCCGG chr17:58217283-58217363 50 9.99e-06 CCACCCCGTG GTGCTGAA GTGCCCCACG chr11:66057140-66057220 60 9.99e-06 CCGTCGTCCG GTGCTGAA AATGTCCTCC chr9:138863967-138864047 59 9.99e-06 CCTCTCCAAG GTGCTGAA ACGCCCCTAG chr10:86051322-86051402 67 9.99e-06 CCTAGTCCTA GTGCTGAA TGATCC chr16:89894993-89895073 44 9.99e-06 CCTGGAGGAG GTGCTGAA GGCCTACGAG chr17:27921300-27921380 36 9.99e-06 CCTTGTCCAG GTGCTGAA AAGCGCTCTC chr1:231298127-231298207 54 2.06e-05 CCGCCTCGTG GTGCTGAT CCCAGCCCCA chr1:11919481-11919561 60 2.06e-05 GCTGTCCGTG GTGCTGAT CACCCCGAGG chr3:10501981-10502061 45 2.06e-05 CAAGGGCACA GTGCTGAT TAGGGAGGTG chr16:14728051-14728131 53 2.06e-05 GGGACTGCAC GTGCTGAT GGGGTTGTTT chr19:55691530-55691610 51 2.06e-05 GCTGTCCCGG GTGCTGAT CGCGGAGCTC chr3:9746055-9746135 64 4.03e-05 GCTGTCCAGA GTGCTGAC AGAGCGGAC chr19:55728452-55728532 63 4.03e-05 GCTGTCCTTG GTGCTGAC GCGGTTCTGG chr11:6589850-6589930 14 4.03e-05 CAACTGTGCT GTGCTGAC TCAGCACTCT chr9:135457574-135457654 1 4.03e-05 . GTGCTGAC GGGCCCCCGG chr19:10172750-10172830 22 4.03e-05 GCTGTCCGTG GTGCTGAC ACGCCGGCCG chr12:53645876-53645956 5 5.08e-05 TCAC GTGATGAA GCCATCATGG chr1:230562417-230562497 63 5.08e-05 CGCCCCGGTG GTTCTGAA CCAGGCGCCG chr12:2861947-2862027 8 5.62e-05 GTCCGTG GTGCTTAA GCGGCGTCTG chr12:55413724-55413804 63 6.63e-05 GAGGCTTGTG GTCCTGAA AGCTCCTCTC chr8:143464803-143464883 55 8.58e-05 GCTGTCCGTG GTGCTGAG AGCCACAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:52056571-52056651 1e-05 60_[+2]_12 chr20:35012571-35012651 1e-05 42_[+2]_30 chr15:72612129-72612209 1e-05 21_[+2]_51 chr8:10847834-10847914 1e-05 10_[+2]_62 chr19:10806603-10806683 1e-05 42_[+2]_30 chr16:88627284-88627364 1e-05 56_[+2]_16 chr19:18344086-18344166 1e-05 48_[+2]_24 chr1:37721154-37721234 1e-05 57_[+2]_15 chr3:48699251-48699331 1e-05 71_[+2]_1 chr19:36370826-36370906 1e-05 63_[+2]_9 chrX:153140936-153141016 1e-05 33_[+2]_39 chr17:58217283-58217363 1e-05 49_[+2]_23 chr11:66057140-66057220 1e-05 59_[+2]_13 chr9:138863967-138864047 1e-05 58_[+2]_14 chr10:86051322-86051402 1e-05 66_[+2]_6 chr16:89894993-89895073 1e-05 43_[+2]_29 chr17:27921300-27921380 1e-05 35_[+2]_37 chr1:231298127-231298207 2.1e-05 53_[+2]_19 chr1:11919481-11919561 2.1e-05 59_[+2]_13 chr3:10501981-10502061 2.1e-05 44_[+2]_28 chr16:14728051-14728131 2.1e-05 52_[+2]_20 chr19:55691530-55691610 2.1e-05 50_[+2]_22 chr3:9746055-9746135 4e-05 63_[+2]_9 chr19:55728452-55728532 4e-05 62_[+2]_10 chr11:6589850-6589930 4e-05 13_[+2]_59 chr9:135457574-135457654 4e-05 [+2]_72 chr19:10172750-10172830 4e-05 21_[+2]_51 chr12:53645876-53645956 5.1e-05 4_[+2]_68 chr1:230562417-230562497 5.1e-05 62_[+2]_10 chr12:2861947-2862027 5.6e-05 7_[+2]_65 chr12:55413724-55413804 6.6e-05 62_[+2]_10 chr8:143464803-143464883 8.6e-05 54_[+2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCTGAA width=8 seqs=32 chr19:52056571-52056651 ( 61) GTGCTGAA 1 chr20:35012571-35012651 ( 43) GTGCTGAA 1 chr15:72612129-72612209 ( 22) GTGCTGAA 1 chr8:10847834-10847914 ( 11) GTGCTGAA 1 chr19:10806603-10806683 ( 43) GTGCTGAA 1 chr16:88627284-88627364 ( 57) GTGCTGAA 1 chr19:18344086-18344166 ( 49) GTGCTGAA 1 chr1:37721154-37721234 ( 58) GTGCTGAA 1 chr3:48699251-48699331 ( 72) GTGCTGAA 1 chr19:36370826-36370906 ( 64) GTGCTGAA 1 chrX:153140936-153141016 ( 34) GTGCTGAA 1 chr17:58217283-58217363 ( 50) GTGCTGAA 1 chr11:66057140-66057220 ( 60) GTGCTGAA 1 chr9:138863967-138864047 ( 59) GTGCTGAA 1 chr10:86051322-86051402 ( 67) GTGCTGAA 1 chr16:89894993-89895073 ( 44) GTGCTGAA 1 chr17:27921300-27921380 ( 36) GTGCTGAA 1 chr1:231298127-231298207 ( 54) GTGCTGAT 1 chr1:11919481-11919561 ( 60) GTGCTGAT 1 chr3:10501981-10502061 ( 45) GTGCTGAT 1 chr16:14728051-14728131 ( 53) GTGCTGAT 1 chr19:55691530-55691610 ( 51) GTGCTGAT 1 chr3:9746055-9746135 ( 64) GTGCTGAC 1 chr19:55728452-55728532 ( 63) GTGCTGAC 1 chr11:6589850-6589930 ( 14) GTGCTGAC 1 chr9:135457574-135457654 ( 1) GTGCTGAC 1 chr19:10172750-10172830 ( 22) GTGCTGAC 1 chr12:53645876-53645956 ( 5) GTGATGAA 1 chr1:230562417-230562497 ( 63) GTTCTGAA 1 chr12:2861947-2862027 ( 8) GTGCTTAA 1 chr12:55413724-55413804 ( 63) GTCCTGAA 1 chr8:143464803-143464883 ( 55) GTGCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.89106 E= 8.1e-022 -1164 -1164 162 -1164 -1164 -1164 -1164 250 -1164 -340 152 -250 -241 155 -1164 -1164 -1164 -1164 -1164 250 -1164 -1164 157 -250 259 -1164 -1164 -1164 198 -108 -338 -18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 8.1e-022 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.031250 0.937500 0.031250 0.031250 0.968750 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.968750 0.031250 1.000000 0.000000 0.000000 0.000000 0.656250 0.156250 0.031250 0.156250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGAA MEME-2 regular expression -------------------------------------------------------------------------------- GTGCTGAA -------------------------------------------------------------------------------- Time 8.46 secs. ******************************************************************************** ******************************************************************************** MOTIF BGGACAGC MEME-3 width = 8 sites = 77 llr = 568 E-value = 4.9e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif BGGACAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::a:a:2 pos.-specific C 4:::8::5 probability G 27a:2:a1 matrix T 33:::::1 bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * Relative 1.6 ** ** Entropy 1.3 ** ** (10.6 bits) 1.0 ****** 0.8 ****** 0.5 ****** 0.3 ******* 0.0 -------- Multilevel CGGACAGC consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGGACAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:176264774-176264854 68 1.86e-05 TTCAGCACCG TGGACAGC CCCAG chr17:61600467-61600547 34 1.86e-05 CACCAAGGCG TGGACAGC TCCCGGGCCG chr3:9746055-9746135 36 1.86e-05 CCATGGTTCC TGGACAGC GATTTCCGGT chr16:88627284-88627364 25 1.86e-05 TTCAGCTCCA TGGACAGC TCCCAGGCTG chr6:69942898-69942978 54 1.86e-05 CCTCCGGCGC TGGACAGC TCTCTGCACG chr1:38261205-38261285 29 1.86e-05 ACCGCGGGCG TGGACAGC TCCGGGGCGC chr14:106267659-10626773 65 1.86e-05 GGCAGCACCA TGGACAGC AGCCAACA chr1:65775573-65775653 37 1.86e-05 GCCAGCACCA TGGACAGC TCAGGTAGCG chr12:72332624-72332704 26 1.86e-05 ACCAGGGTTC TGGACAGC GCCCCAAGCA chr12:109458732-10945881 30 1.86e-05 ACCGGGAAGC TGGACAGC ACCCGCGCCG chr8:144025164-144025244 30 1.86e-05 TGCAGCACCC TGGACAGC GGCAAAGACC chr17:77290734-77290814 14 7.29e-05 TTCAGCACCA CGGACAGC GACCTGCGGG chr4:1404353-1404433 33 7.29e-05 GCCAGCACCG CGGACAGC GCGCTCCCAC chr7:30711625-30711705 21 7.29e-05 TTCAGCACCG CGGACAGC ACAACTCCAT chr19:57149503-57149583 60 7.29e-05 CAAGCCTCGC CGGACAGC CCTGCTGGAA chr3:14167094-14167174 49 7.29e-05 TGTCCAGCAA TGGACAGA CAGGGCTGTC chr9:126872740-126872820 27 7.29e-05 ATCAGCACCG CGGACAGC ATCCAGGCAG chr5:175224000-175224080 51 7.29e-05 ACTGCAGCGG CGGACAGC GGCGGCCGGG chr14:36004545-36004625 49 7.29e-05 GATCAGCACC CGGACAGC GCCCCGAGGC chr16:29911373-29911453 44 7.29e-05 CAGCGGCGCG CGGACAGC TCCCCTcgcc chr9:140033695-140033775 27 7.29e-05 TTCAGCACCG CGGACAGC GCCGGCCGCG chr3:49592127-49592207 37 7.29e-05 CGGCCGGTGG CGGACAGC TCCCCGCGGC chr22:51038676-51038756 47 7.29e-05 CACCCGACGG CGGACAGC TCCTCCCGCG chr1:1270412-1270492 70 7.29e-05 GCCAGCACCA TGGACAGA AAA chr12:120427685-12042776 40 7.29e-05 CCCGCCGAGC CGGACAGC GCCTGCTGCA chr15:40650484-40650564 15 7.29e-05 CACCAGCGCC CGGACAGC GGTGCCGCCC chr16:53133845-53133925 44 9.69e-05 GCTGGGAAAG CTGACAGC CACTGGCGGC chr8:41908731-41908811 56 9.69e-05 GGCGGCTGGG CTGACAGC CCGGCAGACA chr1:45476944-45477024 48 1.14e-04 GGCGCGACCG CGGACAGA GCTTCCCACC chr1:11610873-11610953 19 1.14e-04 TCCAGCACCT CGGACAGA GGTGTCCCCC chr19:46455972-46456052 27 1.52e-04 TTCAGCACCA AGGACAGC GTCCGCGCTA chr8:37888475-37888555 29 1.52e-04 GCACGCCTCC AGGACAGC CACATGCCGA chr20:30556346-30556426 21 1.52e-04 GTCAGCACCA AGGACAGC GTAGCCGGCG chr11:59328515-59328595 32 1.52e-04 CTGTTTTCTT CTGACAGA TCCCATCAAG chr16:89992905-89992985 17 1.52e-04 GTCAGCACCA AGGACAGC GCCCGGGCCG chr1:35390569-35390649 13 1.86e-04 TTCAGCACTC GGGACAGC TCCGAAGGAG chr20:10200265-10200345 65 1.86e-04 TTCAGCACCG GGGACAGC GGTCCGGC chr4:54232173-54232253 22 2.01e-04 CCGGGAGACT TTGACAGT CTCCACAGTA chr3:158519809-158519889 52 2.01e-04 GACCGCCGTC TTGACAGT GTTCCACGGG chr17:26700899-26700979 45 2.47e-04 TTCAGGACCA AGGACAGA GCACAACGTG chr17:3539985-3540065 18 2.47e-04 CGGAGGTCAG GTGACAGC GGACCCGCCT chr1:16302144-16302224 22 2.47e-04 TCAAGGGGCG GTGACAGC CGTGCGGCGG chr8:143955890-143955970 15 2.47e-04 TTCAGCACCT AGGACAGA AGCCGGGTTT chr1:38230104-38230184 35 2.47e-04 TTCAGCACTG CGGACAGT TCCATGATCA chr7:102988515-102988595 53 2.47e-04 CCTTCCCCCT GTGACAGC CGGGAGCTGT chr3:20083103-20083183 56 2.47e-04 TTTTGACAGG GTGACAGC TGAGGGGGGC chr17:57971127-57971207 50 2.47e-04 GCTGTTAGAA GTGACAGC TGAAAACTTC chr16:23847265-23847345 63 2.47e-04 AGCTGGGCGA GTGACAgc cccggctccg chr1:159147231-159147311 31 2.98e-04 GTGCTAGCCC CTGACAGT GACACTCCAG chr19:7627861-7627941 30 2.98e-04 GTCAGCACCA TGGACAGG GATGGTGCTG chr1:155248107-155248187 6 2.98e-04 TCAGC ATGACAGA CTACCAGGAA chr7:65580542-65580622 23 2.98e-04 AAAAGATTTT CTGACAGT TTAACTCCAC chr19:11639422-11639502 43 2.98e-04 tgcctggtat atgacaga tgcctaacga chr8:124053817-124053897 25 3.25e-04 ACCCACGTGG GTGACAGA GGGAGGTCAG chr3:9594032-9594112 25 3.25e-04 ATCAGCACCA TGGAGAGC AGCACGAAGA chr15:74284548-74284628 22 3.35e-04 AGCATGGCTT TTGACAGG AGACACGCCC chr9:132020869-132020949 46 3.35e-04 CGCCCAGAAT TTGACAGG GGACCATGTG chr19:7918343-7918423 3 3.89e-04 GG CGGACAGG CCTCCGCCCA chr6:42013459-42013539 22 3.89e-04 TTAAATGTCT TTGAGAGC AAGATAAACA chr16:3156740-3156820 51 3.89e-04 CTGGGCTGTG CGGACAGG TTCGCGTGGG chr20:33814984-33815064 23 3.89e-04 TTCAGCACCG CGGACAGG GGCAGCGGGC chr11:70496578-70496658 12 4.51e-04 TTCAGCACCC TGGAGAGA GACCATGCCA chr11:46414243-46414323 32 4.51e-04 TTCAGCACCT CGGAGAGC TCCCCGCGCC chr5:139780351-139780431 15 4.51e-04 CTTCCTACGT GGGACAGT TCCCGGTACT chr7:77326810-77326890 17 4.51e-04 AAAAGGGGTG TGGAGAGA GCACTGGCGT chr1:156738221-156738301 57 4.75e-04 TCACCTGGTA CTGACAGG CCTAGGGACA chr9:135457574-135457654 32 5.26e-04 GGCGAGGGCG CGGAGAGA GGACCTCCCC chr1:24070333-24070413 50 6.57e-04 TGTTTCCTGC GGGAGAGC GTGCCCGGGG chr4:6785456-6785536 36 6.90e-04 GGAGCTAGGA GTGACAGG CCCACAGTCA chr1:3585590-3585670 37 6.90e-04 CATCACCTAG GTGACAGG GACGCTGCTG chr16:89284100-89284180 56 7.36e-04 GTGCTGGCGC CGGAGAGT TCCGCGCGTG chr12:101673895-10167397 68 7.36e-04 ATCTGGGAAT CGGAGAGT ATAGC chr1:37721154-37721234 5 7.36e-04 CTCC AGGAGAGA TCAGTCTCTG chr10:102747283-10274736 72 7.53e-04 CCGGCGAAGT GGGAGAGA G chr12:2861947-2862027 72 7.86e-04 TCCCTGGTCC TGGAGAGG T chr15:64162895-64162975 30 7.86e-04 TGTCCAGATG CTGAGAGT TGGGAGACTT chr19:52056571-52056651 40 8.67e-04 ACAGGCATCA GGGAGAGT GGCGCTGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGGACAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:176264774-176264854 1.9e-05 67_[+3]_5 chr17:61600467-61600547 1.9e-05 33_[+3]_39 chr3:9746055-9746135 1.9e-05 35_[+3]_37 chr16:88627284-88627364 1.9e-05 24_[+3]_48 chr6:69942898-69942978 1.9e-05 53_[+3]_19 chr1:38261205-38261285 1.9e-05 28_[+3]_44 chr14:106267659-10626773 1.9e-05 64_[+3]_8 chr1:65775573-65775653 1.9e-05 36_[+3]_36 chr12:72332624-72332704 1.9e-05 25_[+3]_47 chr12:109458732-10945881 1.9e-05 29_[+3]_43 chr8:144025164-144025244 1.9e-05 29_[+3]_43 chr17:77290734-77290814 7.3e-05 13_[+3]_59 chr4:1404353-1404433 7.3e-05 32_[+3]_40 chr7:30711625-30711705 7.3e-05 20_[+3]_52 chr19:57149503-57149583 7.3e-05 59_[+3]_13 chr3:14167094-14167174 7.3e-05 48_[+3]_24 chr9:126872740-126872820 7.3e-05 26_[+3]_46 chr5:175224000-175224080 7.3e-05 50_[+3]_22 chr14:36004545-36004625 7.3e-05 48_[+3]_24 chr16:29911373-29911453 7.3e-05 43_[+3]_29 chr9:140033695-140033775 7.3e-05 26_[+3]_46 chr3:49592127-49592207 7.3e-05 36_[+3]_36 chr22:51038676-51038756 7.3e-05 46_[+3]_26 chr1:1270412-1270492 7.3e-05 69_[+3]_3 chr12:120427685-12042776 7.3e-05 39_[+3]_33 chr15:40650484-40650564 7.3e-05 14_[+3]_58 chr16:53133845-53133925 9.7e-05 43_[+3]_29 chr8:41908731-41908811 9.7e-05 55_[+3]_17 chr1:45476944-45477024 0.00011 47_[+3]_25 chr1:11610873-11610953 0.00011 18_[+3]_54 chr19:46455972-46456052 0.00015 26_[+3]_46 chr8:37888475-37888555 0.00015 28_[+3]_44 chr20:30556346-30556426 0.00015 20_[+3]_52 chr11:59328515-59328595 0.00015 31_[+3]_41 chr16:89992905-89992985 0.00015 16_[+3]_56 chr1:35390569-35390649 0.00019 12_[+3]_60 chr20:10200265-10200345 0.00019 64_[+3]_8 chr4:54232173-54232253 0.0002 21_[+3]_51 chr3:158519809-158519889 0.0002 51_[+3]_21 chr17:26700899-26700979 0.00025 44_[+3]_28 chr17:3539985-3540065 0.00025 17_[+3]_55 chr1:16302144-16302224 0.00025 21_[+3]_51 chr8:143955890-143955970 0.00025 14_[+3]_58 chr1:38230104-38230184 0.00025 34_[+3]_38 chr7:102988515-102988595 0.00025 52_[+3]_20 chr3:20083103-20083183 0.00025 55_[+3]_17 chr17:57971127-57971207 0.00025 49_[+3]_23 chr16:23847265-23847345 0.00025 62_[+3]_10 chr1:159147231-159147311 0.0003 30_[+3]_42 chr19:7627861-7627941 0.0003 29_[+3]_43 chr1:155248107-155248187 0.0003 5_[+3]_67 chr7:65580542-65580622 0.0003 22_[+3]_50 chr19:11639422-11639502 0.0003 42_[+3]_30 chr8:124053817-124053897 0.00033 24_[+3]_48 chr3:9594032-9594112 0.00033 24_[+3]_48 chr15:74284548-74284628 0.00034 21_[+3]_51 chr9:132020869-132020949 0.00034 45_[+3]_27 chr19:7918343-7918423 0.00039 2_[+3]_70 chr6:42013459-42013539 0.00039 21_[+3]_51 chr16:3156740-3156820 0.00039 50_[+3]_22 chr20:33814984-33815064 0.00039 22_[+3]_50 chr11:70496578-70496658 0.00045 11_[+3]_61 chr11:46414243-46414323 0.00045 31_[+3]_41 chr5:139780351-139780431 0.00045 14_[+3]_58 chr7:77326810-77326890 0.00045 16_[+3]_56 chr1:156738221-156738301 0.00047 56_[+3]_16 chr9:135457574-135457654 0.00053 31_[+3]_41 chr1:24070333-24070413 0.00066 49_[+3]_23 chr4:6785456-6785536 0.00069 35_[+3]_37 chr1:3585590-3585670 0.00069 36_[+3]_36 chr16:89284100-89284180 0.00074 55_[+3]_17 chr12:101673895-10167397 0.00074 67_[+3]_5 chr1:37721154-37721234 0.00074 4_[+3]_68 chr10:102747283-10274736 0.00075 71_[+3]_1 chr12:2861947-2862027 0.00079 71_[+3]_1 chr15:64162895-64162975 0.00079 29_[+3]_43 chr19:52056571-52056651 0.00087 39_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGGACAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BGGACAGC width=8 seqs=77 chr5:176264774-176264854 ( 68) TGGACAGC 1 chr17:61600467-61600547 ( 34) TGGACAGC 1 chr3:9746055-9746135 ( 36) TGGACAGC 1 chr16:88627284-88627364 ( 25) TGGACAGC 1 chr6:69942898-69942978 ( 54) TGGACAGC 1 chr1:38261205-38261285 ( 29) TGGACAGC 1 chr14:106267659-10626773 ( 65) TGGACAGC 1 chr1:65775573-65775653 ( 37) TGGACAGC 1 chr12:72332624-72332704 ( 26) TGGACAGC 1 chr12:109458732-10945881 ( 30) TGGACAGC 1 chr8:144025164-144025244 ( 30) TGGACAGC 1 chr17:77290734-77290814 ( 14) CGGACAGC 1 chr4:1404353-1404433 ( 33) CGGACAGC 1 chr7:30711625-30711705 ( 21) CGGACAGC 1 chr19:57149503-57149583 ( 60) CGGACAGC 1 chr3:14167094-14167174 ( 49) TGGACAGA 1 chr9:126872740-126872820 ( 27) CGGACAGC 1 chr5:175224000-175224080 ( 51) CGGACAGC 1 chr14:36004545-36004625 ( 49) CGGACAGC 1 chr16:29911373-29911453 ( 44) CGGACAGC 1 chr9:140033695-140033775 ( 27) CGGACAGC 1 chr3:49592127-49592207 ( 37) CGGACAGC 1 chr22:51038676-51038756 ( 47) CGGACAGC 1 chr1:1270412-1270492 ( 70) TGGACAGA 1 chr12:120427685-12042776 ( 40) CGGACAGC 1 chr15:40650484-40650564 ( 15) CGGACAGC 1 chr16:53133845-53133925 ( 44) CTGACAGC 1 chr8:41908731-41908811 ( 56) CTGACAGC 1 chr1:45476944-45477024 ( 48) CGGACAGA 1 chr1:11610873-11610953 ( 19) CGGACAGA 1 chr19:46455972-46456052 ( 27) AGGACAGC 1 chr8:37888475-37888555 ( 29) AGGACAGC 1 chr20:30556346-30556426 ( 21) AGGACAGC 1 chr11:59328515-59328595 ( 32) CTGACAGA 1 chr16:89992905-89992985 ( 17) AGGACAGC 1 chr1:35390569-35390649 ( 13) GGGACAGC 1 chr20:10200265-10200345 ( 65) GGGACAGC 1 chr4:54232173-54232253 ( 22) TTGACAGT 1 chr3:158519809-158519889 ( 52) TTGACAGT 1 chr17:26700899-26700979 ( 45) AGGACAGA 1 chr17:3539985-3540065 ( 18) GTGACAGC 1 chr1:16302144-16302224 ( 22) GTGACAGC 1 chr8:143955890-143955970 ( 15) AGGACAGA 1 chr1:38230104-38230184 ( 35) CGGACAGT 1 chr7:102988515-102988595 ( 53) GTGACAGC 1 chr3:20083103-20083183 ( 56) GTGACAGC 1 chr17:57971127-57971207 ( 50) GTGACAGC 1 chr16:23847265-23847345 ( 63) GTGACAGC 1 chr1:159147231-159147311 ( 31) CTGACAGT 1 chr19:7627861-7627941 ( 30) TGGACAGG 1 chr1:155248107-155248187 ( 6) ATGACAGA 1 chr7:65580542-65580622 ( 23) CTGACAGT 1 chr19:11639422-11639502 ( 43) ATGACAGA 1 chr8:124053817-124053897 ( 25) GTGACAGA 1 chr3:9594032-9594112 ( 25) TGGAGAGC 1 chr15:74284548-74284628 ( 22) TTGACAGG 1 chr9:132020869-132020949 ( 46) TTGACAGG 1 chr19:7918343-7918423 ( 3) CGGACAGG 1 chr6:42013459-42013539 ( 22) TTGAGAGC 1 chr16:3156740-3156820 ( 51) CGGACAGG 1 chr20:33814984-33815064 ( 23) CGGACAGG 1 chr11:70496578-70496658 ( 12) TGGAGAGA 1 chr11:46414243-46414323 ( 32) CGGAGAGC 1 chr5:139780351-139780431 ( 15) GGGACAGT 1 chr7:77326810-77326890 ( 17) TGGAGAGA 1 chr1:156738221-156738301 ( 57) CTGACAGG 1 chr9:135457574-135457654 ( 32) CGGAGAGA 1 chr1:24070333-24070413 ( 50) GGGAGAGC 1 chr4:6785456-6785536 ( 36) GTGACAGG 1 chr1:3585590-3585670 ( 37) GTGACAGG 1 chr16:89284100-89284180 ( 56) CGGAGAGT 1 chr12:101673895-10167397 ( 68) CGGAGAGT 1 chr1:37721154-37721234 ( 5) AGGAGAGA 1 chr10:102747283-10274736 ( 72) GGGAGAGA 1 chr12:2861947-2862027 ( 72) TGGAGAGG 1 chr15:64162895-64162975 ( 30) CTGAGAGT 1 chr19:52056571-52056651 ( 40) GGGAGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGGACAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.79481 E= 4.9e-018 -51 24 -74 75 -1291 -1291 110 75 -1291 -1291 162 -1291 259 -1291 -1291 -1291 -1291 131 -84 -1291 259 -1291 -1291 -1291 -1291 -1291 162 -1291 23 72 -133 -45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGGACAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 4.9e-018 0.116883 0.389610 0.194805 0.298701 0.000000 0.000000 0.701299 0.298701 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.194805 0.545455 0.129870 0.129870 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGGACAGC MEME-3 regular expression -------------------------------------------------------------------------------- [CT][GT]GACAGC -------------------------------------------------------------------------------- Time 11.90 secs. ******************************************************************************** ******************************************************************************** MOTIF HGCTGTCC MEME-4 width = 8 sites = 37 llr = 337 E-value = 1.3e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif HGCTGTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4::::::1 pos.-specific C 4:a:::a9 probability G :a::a::: matrix T 2::a:a:: bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * Relative 1.6 ****** Entropy 1.3 ******* (13.2 bits) 1.0 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCTGTCC consensus A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGCTGTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:14167094-14167174 36 2.00e-05 GCCCAAGTGG AGCTGTCC AGCAATGGAC chr9:126872740-126872820 54 2.00e-05 GGGACCGGGG AGCTGTCC TGGGTGCTAG chr3:10501981-10502061 26 2.00e-05 CTTCCCTGGG AGCTGTCC TCAAGGGCAC chr8:10847834-10847914 42 2.00e-05 TCCCAAAGGG AGCTGTCC ATGGTCACAA chr19:18344086-18344166 32 2.00e-05 GACAGCGAGG AGCTGTCC GCGCCGGAGG chr21:34100723-34100803 36 2.00e-05 GCGCCTGAAG AGCTGTCC ATGGTGTCGA chr19:36370826-36370906 53 2.00e-05 CCTGTCCTGG AGCTGTCC GCGGTGCTGA chr6:31627608-31627688 14 2.00e-05 TTCTCCGAGG AGCTGTCC ACCCGTCTGG chr1:230562417-230562497 46 2.00e-05 AGCTCCAGGG AGCTGTCC GCCCCGGTGG chr16:89894993-89895073 27 2.00e-05 gAGCCCTGGG AGCTGTCC CTGGAGGAGG chr19:52056571-52056651 50 8.06e-05 GGGAGAGTGG CGCTGTCC CTGGTGCTGA chr1:231298127-231298207 35 8.06e-05 GGCTCCCGGG CGCTGTCC GCCGCCTCGT chr3:9746055-9746135 53 8.06e-05 CGATTTCCGG TGCTGTCC AGAGTGCTGA chr12:57984951-57985031 9 8.06e-05 CGCGCGTC CGCTGTCC GGCCTCCGGT chr19:55728452-55728532 52 8.06e-05 GGCTCCCTGG CGCTGTCC TTGGTGCTGA chr19:7627861-7627941 43 8.06e-05 ACAGGGATGG TGCTGTCC GAGGTGCTAC chr15:72612129-72612209 11 8.06e-05 ATGCCGACGC CGCTGTCC GCGGTGCTGA chr1:11919481-11919561 49 8.06e-05 GCGCCCTGGC CGCTGTCC GTGGTGCTGA chr15:48623844-48623924 35 8.06e-05 ATTCCCCGGC CGCTGTCC AGCGCTGGCC chr5:139780351-139780431 42 8.06e-05 TGAGGCATGG CGCTGTCC AGCCCTCAGG chr19:10806603-10806683 32 8.06e-05 ACGCGTACGG CGCTGTCC ACTGTGCTGA chr16:88627284-88627364 41 8.06e-05 GCTCCCAGGC TGCTGTCC TCCATGTGGT chr16:71501826-71501906 8 8.06e-05 GCCGTGG TGCTGTCC AAGGTGCTAG chr1:155248107-155248187 71 8.06e-05 CAGCTCTGGT CGCTGTCC CT chr8:143464803-143464883 44 8.06e-05 GCTGGCCAGG CGCTGTCC GTGGTGCTGA chrX:153140936-153141016 23 8.06e-05 GCTCCAGGTT CGCTGTCC CTGGTGCTGA chr17:58217283-58217363 34 8.06e-05 GCTTCCAGGG TGCTGTCC ACCCCGTGGT chr11:66057140-66057220 44 8.06e-05 TCCGCGCGGG TGCTGTCC GTCGTCCGGT chr8:91095000-91095080 58 8.06e-05 CGCTGCCGGG CGCTGTCC TCGGTGCTGC chr12:2861947-2862027 57 8.06e-05 GGCGGGTGAG CGCTGTCC CTGGTCCTGG chr15:64162895-64162975 17 8.06e-05 TGGCCTGAGG TGCTGTCC AGATGCTGAG chr10:86051322-86051402 51 8.06e-05 AGAGAGCCAG TGCTGTCC TAGTCCTAGT chr19:55691530-55691610 40 8.06e-05 TGGGCGGTGG CGCTGTCC CGGGTGCTGA chr16:88637244-88637324 20 9.08e-05 ATTTTCCTGA AGCTGTCA TTTCTCTTCC chr7:102988515-102988595 65 9.08e-05 GACAGCCGGG AGCTGTCA CTGTGTAG chr7:100887677-100887757 45 1.21e-04 ACAGTAAACA CGCTGTCA GAACTGCTCA chrX:152735370-152735450 55 1.32e-04 CTCGTGGGCC AGCTTTCC TCACTGCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGCTGTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:14167094-14167174 2e-05 35_[+4]_37 chr9:126872740-126872820 2e-05 53_[+4]_19 chr3:10501981-10502061 2e-05 25_[+4]_47 chr8:10847834-10847914 2e-05 41_[+4]_31 chr19:18344086-18344166 2e-05 31_[+4]_41 chr21:34100723-34100803 2e-05 35_[+4]_37 chr19:36370826-36370906 2e-05 52_[+4]_20 chr6:31627608-31627688 2e-05 13_[+4]_59 chr1:230562417-230562497 2e-05 45_[+4]_27 chr16:89894993-89895073 2e-05 26_[+4]_46 chr19:52056571-52056651 8.1e-05 49_[+4]_23 chr1:231298127-231298207 8.1e-05 34_[+4]_38 chr3:9746055-9746135 8.1e-05 52_[+4]_20 chr12:57984951-57985031 8.1e-05 8_[+4]_64 chr19:55728452-55728532 8.1e-05 51_[+4]_21 chr19:7627861-7627941 8.1e-05 42_[+4]_30 chr15:72612129-72612209 8.1e-05 10_[+4]_62 chr1:11919481-11919561 8.1e-05 48_[+4]_24 chr15:48623844-48623924 8.1e-05 34_[+4]_38 chr5:139780351-139780431 8.1e-05 41_[+4]_31 chr19:10806603-10806683 8.1e-05 31_[+4]_41 chr16:88627284-88627364 8.1e-05 40_[+4]_32 chr16:71501826-71501906 8.1e-05 7_[+4]_65 chr1:155248107-155248187 8.1e-05 70_[+4]_2 chr8:143464803-143464883 8.1e-05 43_[+4]_29 chrX:153140936-153141016 8.1e-05 22_[+4]_50 chr17:58217283-58217363 8.1e-05 33_[+4]_39 chr11:66057140-66057220 8.1e-05 43_[+4]_29 chr8:91095000-91095080 8.1e-05 57_[+4]_15 chr12:2861947-2862027 8.1e-05 56_[+4]_16 chr15:64162895-64162975 8.1e-05 16_[+4]_56 chr10:86051322-86051402 8.1e-05 50_[+4]_22 chr19:55691530-55691610 8.1e-05 39_[+4]_33 chr16:88637244-88637324 9.1e-05 19_[+4]_53 chr7:102988515-102988595 9.1e-05 64_[+4]_8 chr7:100887677-100887757 0.00012 44_[+4]_28 chrX:152735370-152735450 0.00013 54_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGCTGTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HGCTGTCC width=8 seqs=37 chr3:14167094-14167174 ( 36) AGCTGTCC 1 chr9:126872740-126872820 ( 54) AGCTGTCC 1 chr3:10501981-10502061 ( 26) AGCTGTCC 1 chr8:10847834-10847914 ( 42) AGCTGTCC 1 chr19:18344086-18344166 ( 32) AGCTGTCC 1 chr21:34100723-34100803 ( 36) AGCTGTCC 1 chr19:36370826-36370906 ( 53) AGCTGTCC 1 chr6:31627608-31627688 ( 14) AGCTGTCC 1 chr1:230562417-230562497 ( 46) AGCTGTCC 1 chr16:89894993-89895073 ( 27) AGCTGTCC 1 chr19:52056571-52056651 ( 50) CGCTGTCC 1 chr1:231298127-231298207 ( 35) CGCTGTCC 1 chr3:9746055-9746135 ( 53) TGCTGTCC 1 chr12:57984951-57985031 ( 9) CGCTGTCC 1 chr19:55728452-55728532 ( 52) CGCTGTCC 1 chr19:7627861-7627941 ( 43) TGCTGTCC 1 chr15:72612129-72612209 ( 11) CGCTGTCC 1 chr1:11919481-11919561 ( 49) CGCTGTCC 1 chr15:48623844-48623924 ( 35) CGCTGTCC 1 chr5:139780351-139780431 ( 42) CGCTGTCC 1 chr19:10806603-10806683 ( 32) CGCTGTCC 1 chr16:88627284-88627364 ( 41) TGCTGTCC 1 chr16:71501826-71501906 ( 8) TGCTGTCC 1 chr1:155248107-155248187 ( 71) CGCTGTCC 1 chr8:143464803-143464883 ( 44) CGCTGTCC 1 chrX:153140936-153141016 ( 23) CGCTGTCC 1 chr17:58217283-58217363 ( 34) TGCTGTCC 1 chr11:66057140-66057220 ( 44) TGCTGTCC 1 chr8:91095000-91095080 ( 58) CGCTGTCC 1 chr12:2861947-2862027 ( 57) CGCTGTCC 1 chr15:64162895-64162975 ( 17) TGCTGTCC 1 chr10:86051322-86051402 ( 51) TGCTGTCC 1 chr19:55691530-55691610 ( 40) CGCTGTCC 1 chr16:88637244-88637324 ( 20) AGCTGTCA 1 chr7:102988515-102988595 ( 65) AGCTGTCA 1 chr7:100887677-100887757 ( 45) CGCTGTCA 1 chrX:152735370-152735450 ( 55) AGCTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGCTGTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.27814 E= 1.3e-016 108 39 -1185 29 -1185 -1185 162 -1185 -1185 160 -1185 -1185 -1185 -1185 -1185 250 -1185 -1185 158 -271 -1185 -1185 -1185 250 -1185 160 -1185 -1185 -104 148 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGCTGTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.3e-016 0.351351 0.432432 0.000000 0.216216 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.972973 0.027027 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.081081 0.918919 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGCTGTCC MEME-4 regular expression -------------------------------------------------------------------------------- [CAT]GCTGTCC -------------------------------------------------------------------------------- Time 15.25 secs. ******************************************************************************** ******************************************************************************** MOTIF SCACGTGG MEME-5 width = 8 sites = 59 llr = 458 E-value = 3.3e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCACGTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2:a:2::1 pos.-specific C 5a:a:::2 probability G 2:::8:a5 matrix T 1::::a:2 bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * Relative 1.6 *** ** Entropy 1.3 *** ** (11.2 bits) 1.0 ****** 0.8 ****** 0.5 ****** 0.3 ****** 0.0 -------- Multilevel CCACGTGG consensus G C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:124053817-124053897 17 3.68e-05 TACAGGCCAC CCACGTGG GTGACAGAGG chr1:111991806-111991886 56 3.68e-05 GCAGCAAACC CCACGTGG TGCACCTCTG chr1:229761906-229761986 64 3.68e-05 GGTACCGGTC CCACGTGG TGGGGACGC chr11:71159669-71159749 52 3.68e-05 GGCGGAGTGG CCACGTGG GCCGCGCGGA chr11:119252507-11925258 25 3.68e-05 ACACAGAGAA CCACGTGG AGGAAAAGCA chr21:47609212-47609292 28 3.68e-05 TGCTGCTACC CCACGTGG GGGAGAACAC chr17:33469282-33469362 22 3.68e-05 TCCTGCGTCC CCACGTGG AGGAGAAAGA chr19:13096201-13096281 42 3.68e-05 CTCCGTGTGG CCACGTGG CTAGCACAGC chr19:2151836-2151916 54 3.68e-05 GGCGGGGCGC CCACGTGG AGCTTAGCCG chr7:150759521-150759601 31 3.68e-05 CTCCCTGCCC CCACGTGG CCACCGCTCC chr8:124553479-124553559 68 3.68e-05 GGCCCGGAGG CCACGTGG CTTTG chr12:125473585-12547366 45 3.68e-05 GAAACCCAGC CCACGTGG GTTCCCAGAC chr5:154317290-154317370 20 3.68e-05 GCAAGCGGCC CCACGTGG AAGCTCCAGG chr7:65580542-65580622 37 3.68e-05 CAGTTTAACT CCACGTGG TCTTTTCCAT chr2:183989554-183989634 65 5.54e-05 TGACCGCGGT ACACGTGG GTGGGCGG chr4:57302566-57302646 58 5.54e-05 GCGCGGGCGC ACACGTGG CCCAGGCGCT chr4:54232173-54232253 39 5.54e-05 TCTCCACAGT ACACGTGG TCGGCCTCTG chr17:71088781-71088861 67 5.54e-05 TCCCTCCCGC ACACGTGG CCCTCC chr22:19166574-19166654 64 5.54e-05 CTCCCCGAAA ACACGTGG GGCTAGCCC chr20:48808954-48809034 34 7.54e-05 CTGACGCAAC CCACGTGT AACTGTCAGC chr2:29118228-29118308 58 7.54e-05 TGCCGGCTCA CCACGTGT TCTCGTCCCC chr7:65541408-65541488 13 7.54e-05 TTCCTTCTTA CCACGTGT CCTCCTGTCA chr1:245026262-245026342 31 7.54e-05 GGCCCGAAGC CCACGTGT ATCCCGAAGA chr14:106267659-10626773 39 7.54e-05 AGCTTGGACA CCACGTGT CTGACCAAGG chr6:17820360-17820440 6 1.04e-04 ACAGG CCACGTGA GTGAGGCTAT chr9:132020869-132020949 18 1.04e-04 GGGCTCCCAG ACACGTGT CCCCGGGAGC chr4:110736903-110736983 45 1.50e-04 GGCCAGAGGG GCACGTGG CGCCGGTGAG chr7:100450186-100450266 31 1.50e-04 ATCCCCGGGC GCACGTGG AGCTGGAGCA chr8:143955890-143955970 58 1.50e-04 CGCAGCCCAT GCACGTGG TGCAGCCTTC chr16:58718626-58718706 28 1.50e-04 GGCTGCGGAG ACACGTGA GCATGCATCA chr19:55691530-55691610 25 1.50e-04 CCCACCCCCT GCACGTGG GCGGTGGCGC chr15:85524108-85524188 65 1.50e-04 GCGAGGGAGC GCACGTGG GCTGCGGC chr19:41903225-41903305 19 1.88e-04 CGCGCCGAGC CCACGTGC GGCTGCAGTT chr19:47200542-47200622 44 1.88e-04 GCCTGGAGCA CCACGTGC ACGCCGTAAC chr6:151187433-151187513 34 1.88e-04 ACGCCCGGCT CCACGTGC GCAGCCGGCC chr17:49336673-49336753 57 1.88e-04 ATTTCCACCT CCACGTGC AAACCGCCTC chr7:105162653-105162733 31 2.06e-04 CCGGGCTCGC ACACGTGC GGCGCAGCGA chr21:46961707-46961787 15 2.06e-04 TCCCGAAGCA ACACGTGC CTGGGCGCGA chr1:156251154-156251234 51 2.06e-04 ATGATAAGGC ACACGTGC CACCCCCAGC chr21:33765242-33765322 67 2.25e-04 CGCTTCAGGC CCACATgg cgcagg chr17:7482663-7482743 42 2.74e-04 GCTGAGTTTG ACACATGG ATCCCTGTGG chr1:11796060-11796140 67 2.74e-04 CCAGCCCGTT TCACGTGG TCTTGA chr14:103995532-10399561 32 2.74e-04 CGTCGCGGAG GCACGTGT GGAGCCCCGG chr14:62161941-62162021 20 2.93e-04 ACACAGACGA GCACGTGA GCGTCGCAGC chr12:101673895-10167397 38 2.93e-04 GGCTCAAGCC GCACGTGA GAAAGTCTGG chr15:75495135-75495215 36 3.40e-04 CCTGCTGGAT GCACGTGC GTCTCGGCGC chr1:156738221-156738301 34 3.40e-04 CTGCAGAAGG CCACATGT CATCATCACC chr11:59328515-59328595 72 3.40e-04 TCTAGGCCTC GCACGTGC T chr2:43449163-43449243 35 3.65e-04 GCTACCGCAG CCACATGA TCCACTCAGT chr16:5083880-5083960 70 3.99e-04 TGGGCTCGCC TCACGTGA CTC chr2:32853167-32853247 43 3.99e-04 GGTAGTATCC GCACATGG AATTCTAGGG chr9:138391681-138391761 73 3.99e-04 GACGGCCAGG TCACGTGA chr19:34012626-34012706 59 3.99e-04 GGCACCGGCG TCACGTGA AGTGCGGCGT chr17:1933397-1933477 48 4.18e-04 CTTTTTAGTA CCACATGC GCAGGCAGGT chr1:43148794-43148874 16 4.48e-04 TCCCCTTCCC TCACGTGC TCTCCGTCCG chr6:33291301-33291381 73 4.48e-04 GATCGTTATA ACACATGC chr1:156830620-156830700 25 4.68e-04 ACCGCCCAGC GCACATGT CGGGGGAGGC chr16:88637244-88637324 52 4.68e-04 CACTCGCGTG GCACATGT GTGCCGCCGG chr1:25758757-25758837 12 4.96e-04 TGTACACCTT GCACATGC TCTTGTTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:124053817-124053897 3.7e-05 16_[+5]_56 chr1:111991806-111991886 3.7e-05 55_[+5]_17 chr1:229761906-229761986 3.7e-05 63_[+5]_9 chr11:71159669-71159749 3.7e-05 51_[+5]_21 chr11:119252507-11925258 3.7e-05 24_[+5]_48 chr21:47609212-47609292 3.7e-05 27_[+5]_45 chr17:33469282-33469362 3.7e-05 21_[+5]_51 chr19:13096201-13096281 3.7e-05 41_[+5]_31 chr19:2151836-2151916 3.7e-05 53_[+5]_19 chr7:150759521-150759601 3.7e-05 30_[+5]_42 chr8:124553479-124553559 3.7e-05 67_[+5]_5 chr12:125473585-12547366 3.7e-05 44_[+5]_28 chr5:154317290-154317370 3.7e-05 19_[+5]_53 chr7:65580542-65580622 3.7e-05 36_[+5]_36 chr2:183989554-183989634 5.5e-05 64_[+5]_8 chr4:57302566-57302646 5.5e-05 57_[+5]_15 chr4:54232173-54232253 5.5e-05 38_[+5]_34 chr17:71088781-71088861 5.5e-05 66_[+5]_6 chr22:19166574-19166654 5.5e-05 63_[+5]_9 chr20:48808954-48809034 7.5e-05 33_[+5]_39 chr2:29118228-29118308 7.5e-05 57_[+5]_15 chr7:65541408-65541488 7.5e-05 12_[+5]_60 chr1:245026262-245026342 7.5e-05 30_[+5]_42 chr14:106267659-10626773 7.5e-05 38_[+5]_34 chr6:17820360-17820440 0.0001 5_[+5]_67 chr9:132020869-132020949 0.0001 17_[+5]_55 chr4:110736903-110736983 0.00015 44_[+5]_28 chr7:100450186-100450266 0.00015 30_[+5]_42 chr8:143955890-143955970 0.00015 57_[+5]_15 chr16:58718626-58718706 0.00015 27_[+5]_45 chr19:55691530-55691610 0.00015 24_[+5]_48 chr15:85524108-85524188 0.00015 64_[+5]_8 chr19:41903225-41903305 0.00019 18_[+5]_54 chr19:47200542-47200622 0.00019 43_[+5]_29 chr6:151187433-151187513 0.00019 33_[+5]_39 chr17:49336673-49336753 0.00019 56_[+5]_16 chr7:105162653-105162733 0.00021 30_[+5]_42 chr21:46961707-46961787 0.00021 14_[+5]_58 chr1:156251154-156251234 0.00021 50_[+5]_22 chr21:33765242-33765322 0.00023 66_[+5]_6 chr17:7482663-7482743 0.00027 41_[+5]_31 chr1:11796060-11796140 0.00027 66_[+5]_6 chr14:103995532-10399561 0.00027 31_[+5]_41 chr14:62161941-62162021 0.00029 19_[+5]_53 chr12:101673895-10167397 0.00029 37_[+5]_35 chr15:75495135-75495215 0.00034 35_[+5]_37 chr1:156738221-156738301 0.00034 33_[+5]_39 chr11:59328515-59328595 0.00034 71_[+5]_1 chr2:43449163-43449243 0.00037 34_[+5]_38 chr16:5083880-5083960 0.0004 69_[+5]_3 chr2:32853167-32853247 0.0004 42_[+5]_30 chr9:138391681-138391761 0.0004 72_[+5] chr19:34012626-34012706 0.0004 58_[+5]_14 chr17:1933397-1933477 0.00042 47_[+5]_25 chr1:43148794-43148874 0.00045 15_[+5]_57 chr6:33291301-33291381 0.00045 72_[+5] chr1:156830620-156830700 0.00047 24_[+5]_48 chr16:88637244-88637324 0.00047 51_[+5]_21 chr1:25758757-25758837 0.0005 11_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCACGTGG width=8 seqs=59 chr8:124053817-124053897 ( 17) CCACGTGG 1 chr1:111991806-111991886 ( 56) CCACGTGG 1 chr1:229761906-229761986 ( 64) CCACGTGG 1 chr11:71159669-71159749 ( 52) CCACGTGG 1 chr11:119252507-11925258 ( 25) CCACGTGG 1 chr21:47609212-47609292 ( 28) CCACGTGG 1 chr17:33469282-33469362 ( 22) CCACGTGG 1 chr19:13096201-13096281 ( 42) CCACGTGG 1 chr19:2151836-2151916 ( 54) CCACGTGG 1 chr7:150759521-150759601 ( 31) CCACGTGG 1 chr8:124553479-124553559 ( 68) CCACGTGG 1 chr12:125473585-12547366 ( 45) CCACGTGG 1 chr5:154317290-154317370 ( 20) CCACGTGG 1 chr7:65580542-65580622 ( 37) CCACGTGG 1 chr2:183989554-183989634 ( 65) ACACGTGG 1 chr4:57302566-57302646 ( 58) ACACGTGG 1 chr4:54232173-54232253 ( 39) ACACGTGG 1 chr17:71088781-71088861 ( 67) ACACGTGG 1 chr22:19166574-19166654 ( 64) ACACGTGG 1 chr20:48808954-48809034 ( 34) CCACGTGT 1 chr2:29118228-29118308 ( 58) CCACGTGT 1 chr7:65541408-65541488 ( 13) CCACGTGT 1 chr1:245026262-245026342 ( 31) CCACGTGT 1 chr14:106267659-10626773 ( 39) CCACGTGT 1 chr6:17820360-17820440 ( 6) CCACGTGA 1 chr9:132020869-132020949 ( 18) ACACGTGT 1 chr4:110736903-110736983 ( 45) GCACGTGG 1 chr7:100450186-100450266 ( 31) GCACGTGG 1 chr8:143955890-143955970 ( 58) GCACGTGG 1 chr16:58718626-58718706 ( 28) ACACGTGA 1 chr19:55691530-55691610 ( 25) GCACGTGG 1 chr15:85524108-85524188 ( 65) GCACGTGG 1 chr19:41903225-41903305 ( 19) CCACGTGC 1 chr19:47200542-47200622 ( 44) CCACGTGC 1 chr6:151187433-151187513 ( 34) CCACGTGC 1 chr17:49336673-49336753 ( 57) CCACGTGC 1 chr7:105162653-105162733 ( 31) ACACGTGC 1 chr21:46961707-46961787 ( 15) ACACGTGC 1 chr1:156251154-156251234 ( 51) ACACGTGC 1 chr21:33765242-33765322 ( 67) CCACATGG 1 chr17:7482663-7482743 ( 42) ACACATGG 1 chr1:11796060-11796140 ( 67) TCACGTGG 1 chr14:103995532-10399561 ( 32) GCACGTGT 1 chr14:62161941-62162021 ( 20) GCACGTGA 1 chr12:101673895-10167397 ( 38) GCACGTGA 1 chr15:75495135-75495215 ( 36) GCACGTGC 1 chr1:156738221-156738301 ( 34) CCACATGT 1 chr11:59328515-59328595 ( 72) GCACGTGC 1 chr2:43449163-43449243 ( 35) CCACATGA 1 chr16:5083880-5083960 ( 70) TCACGTGA 1 chr2:32853167-32853247 ( 43) GCACATGG 1 chr9:138391681-138391761 ( 73) TCACGTGA 1 chr19:34012626-34012706 ( 59) TCACGTGA 1 chr17:1933397-1933477 ( 48) CCACATGC 1 chr1:43148794-43148874 ( 16) TCACGTGC 1 chr6:33291301-33291381 ( 73) ACACATGC 1 chr1:156830620-156830700 ( 25) GCACATGT 1 chr16:88637244-88637324 ( 52) GCACATGT 1 chr1:25758757-25758837 ( 12) GCACATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.53308 E= 3.3e-013 29 52 -46 -106 -1253 160 -1253 -1253 259 -1253 -1253 -1253 -1253 160 -1253 -1253 3 -1253 135 -1253 -1253 -1253 -1253 250 -1253 -1253 162 -1253 -30 -58 54 -6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 3.3e-013 0.203390 0.474576 0.237288 0.084746 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.169492 0.000000 0.830508 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.135593 0.220339 0.474576 0.169492 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGG MEME-5 regular expression -------------------------------------------------------------------------------- [CGA]CACGTG[GC] -------------------------------------------------------------------------------- Time 18.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:27921300-27921380 3.04e-03 35_[+2(9.99e-06)]_37 chr17:73630101-73630181 1.27e-02 80 chr16:23847265-23847345 6.30e-02 80 chr1:156251154-156251234 8.70e-03 80 chr15:40650484-40650564 1.15e-03 [+1(7.81e-05)]_6_[+3(7.29e-05)]_58 chr12:120427685-12042776 1.93e-03 23_[+1(7.81e-05)]_8_[+3(7.29e-05)]_\ 33 chr3:10052938-10053018 6.34e-02 29_[+1(2.00e-05)]_43 chr8:144025164-144025244 6.10e-03 29_[+3(1.86e-05)]_43 chr17:57971127-57971207 4.81e-03 36_[+1(8.89e-05)]_36 chr1:1270412-1270492 3.05e-02 69_[+3(7.29e-05)]_3 chr15:85524108-85524188 3.49e-01 80 chr12:109458732-10945881 5.03e-04 14_[+1(7.81e-05)]_7_[+3(1.86e-05)]_\ 43 chrX:152735370-152735450 6.58e-04 80 chr22:51038676-51038756 3.54e-03 6_[+1(7.81e-05)]_18_[+1(7.81e-05)]_\ 6_[+3(7.29e-05)]_26 chr3:49592127-49592207 7.46e-03 19_[+1(7.81e-05)]_9_[+3(7.29e-05)]_\ 36 chr16:89894993-89895073 1.87e-04 26_[+4(2.00e-05)]_9_[+2(9.99e-06)]_\ 29 chr5:176038485-176038565 1.00e-02 43_[+3(7.29e-05)]_29 chr1:230562417-230562497 2.85e-04 45_[+4(2.00e-05)]_9_[+2(5.08e-05)]_\ 10 chr12:72332624-72332704 7.34e-04 10_[+1(7.81e-05)]_7_[+3(1.86e-05)]_\ 47 chr20:33814984-33815064 1.57e-02 13_[+1(7.81e-05)]_59 chr9:140033695-140033775 1.14e-03 17_[+1(7.81e-05)]_1_[+3(7.29e-05)]_\ 46 chr17:72667510-72667590 8.36e-02 80 chr8:145560359-145560439 7.44e-02 14_[+1(7.81e-05)]_58 chr3:50563576-50563656 7.58e-03 24_[+5(5.54e-05)]_48 chr11:61891973-61892053 2.39e-01 80 chr19:55691530-55691610 7.54e-05 39_[+4(8.06e-05)]_3_[+2(2.06e-05)]_\ 22 chr19:47289473-47289553 4.28e-02 80 chr3:20083103-20083183 1.90e-04 30_[+1(3.88e-05)]_42 chr10:86051322-86051402 9.98e-04 50_[+4(8.06e-05)]_8_[+2(9.99e-06)]_\ 6 chr12:55413724-55413804 5.96e-03 62_[+2(6.63e-05)]_10 chr7:102988515-102988595 5.41e-03 64_[+4(9.08e-05)]_8 chr5:141017584-141017664 6.02e-03 42_[+3(7.29e-05)]_30 chr6:7390436-7390516 2.53e-01 80 chr15:64162895-64162975 4.90e-03 16_[+4(8.06e-05)]_56 chr19:11639422-11639502 3.45e-02 80 chr19:11590485-11590565 3.26e-02 80 chr1:65775573-65775653 1.38e-03 36_[+3(1.86e-05)]_36 chr12:2861947-2862027 1.37e-03 7_[+2(5.62e-05)]_41_[+4(8.06e-05)]_\ 16 chr7:65580542-65580622 8.24e-03 36_[+5(3.68e-05)]_36 chr8:91095000-91095080 3.86e-02 57_[+4(8.06e-05)]_15 chr7:77326810-77326890 1.36e-02 80 chr9:132020869-132020949 2.00e-02 80 chr15:75280494-75280574 1.10e-02 26_[+3(7.29e-05)]_46 chr14:106267659-10626773 3.72e-04 20_[+3(7.29e-05)]_10_[+5(7.54e-05)]_\ 18_[+3(1.86e-05)]_8 chr9:138863967-138864047 2.93e-03 58_[+2(9.99e-06)]_14 chr9:139890933-139891013 1.65e-01 80 chr21:33765242-33765322 2.46e-02 80 chr17:49336673-49336753 1.44e-01 80 chr6:31627608-31627688 2.13e-02 13_[+4(2.00e-05)]_59 chr11:66057140-66057220 4.44e-03 43_[+4(8.06e-05)]_8_[+2(9.99e-06)]_\ 13 chr17:58217283-58217363 1.25e-04 33_[+4(8.06e-05)]_8_[+2(9.99e-06)]_\ 23 chr14:103995532-10399561 1.59e-01 80 chr2:232578604-232578684 3.43e-01 80 chr7:123174584-123174664 8.35e-02 39_[+1(8.89e-05)]_33 chr1:24070333-24070413 4.07e-02 80 chrX:153140936-153141016 2.51e-03 22_[+4(8.06e-05)]_3_[+2(9.99e-06)]_\ 39 chr16:29911373-29911453 9.41e-03 26_[+1(7.81e-05)]_9_[+3(7.29e-05)]_\ 29 chr20:62284649-62284729 2.82e-01 80 chr17:74137354-74137434 5.83e-01 80 chr16:53469482-53469562 7.55e-02 53_[+1(8.89e-05)]_19 chr10:124671561-12467164 9.41e-02 16_[+1(7.81e-05)]_21_[+1(7.81e-05)]_\ 27 chr21:46961707-46961787 1.43e-02 80 chr18:3454000-3454080 1.72e-03 2_[+3(9.69e-05)]_70 chr19:36370826-36370906 2.68e-04 52_[+4(2.00e-05)]_3_[+2(9.99e-06)]_\ 9 chr2:73612800-73612880 9.73e-01 80 chr19:10172750-10172830 4.40e-03 21_[+2(4.03e-05)]_51 chr12:100594459-10059453 5.45e-01 80 chr1:38261205-38261285 6.95e-03 13_[+1(7.81e-05)]_7_[+3(1.86e-05)]_\ 44 chr5:154317290-154317370 6.01e-02 19_[+5(3.68e-05)]_53 chr1:2121165-2121245 2.02e-02 80 chr3:48699251-48699331 4.25e-04 12_[+4(2.00e-05)]_12_[+2(9.99e-06)]_\ 11_[+4(2.00e-05)]_12_[+2(9.99e-06)]_1 chr1:37721154-37721234 6.40e-04 57_[+2(9.99e-06)]_15 chr20:61174190-61174270 4.42e-03 25_[+3(1.86e-05)]_47 chr21:34100723-34100803 1.02e-03 35_[+4(2.00e-05)]_37 chr3:49977895-49977975 5.83e-02 80 chr8:143464803-143464883 1.63e-04 43_[+4(8.06e-05)]_3_[+2(8.58e-05)]_\ 18 chr3:47822930-47823010 3.93e-01 80 chr12:125473585-12547366 2.35e-02 44_[+5(3.68e-05)]_28 chr2:43449163-43449243 1.05e-02 18_[+1(2.00e-05)]_54 chr11:118305625-11830570 1.78e-01 19_[+1(7.81e-05)]_53 chr14:36004545-36004625 9.59e-03 4_[+1(7.81e-05)]_28_[+1(7.81e-05)]_\ [+3(7.29e-05)]_24 chr8:124553479-124553559 2.14e-02 67_[+5(3.68e-05)]_5 chr4:184427513-184427593 9.22e-01 80 chr1:155248107-155248187 7.21e-04 70_[+4(8.06e-05)]_2 chr19:34012626-34012706 1.88e-01 80 chr20:20033156-20033236 1.99e-01 80 chr16:71501826-71501906 5.54e-02 7_[+4(8.06e-05)]_65 chr19:18344086-18344166 7.24e-05 31_[+4(2.00e-05)]_9_[+2(9.99e-06)]_\ 24 chr1:38230104-38230184 1.40e-02 80 chr6:69942898-69942978 1.52e-03 16_[+3(7.29e-05)]_13_[+1(7.81e-05)]_\ 8_[+3(1.86e-05)]_19 chr12:101673895-10167397 8.88e-02 80 chr16:88627284-88627364 3.63e-08 15_[+1(5.91e-05)]_1_[+3(1.86e-05)]_\ 8_[+4(8.06e-05)]_8_[+2(9.99e-06)]_16 chr1:65775967-65776047 5.46e-03 80 chr12:110151442-11015152 8.68e-01 80 chr19:10806603-10806683 1.76e-03 31_[+4(8.06e-05)]_3_[+2(9.99e-06)]_\ 30 chr5:139780351-139780431 1.02e-03 41_[+4(8.06e-05)]_31 chr20:10200265-10200345 5.24e-03 4_[+1(7.81e-05)]_43_[+1(7.81e-05)]_\ 17 chr16:3156740-3156820 6.24e-02 80 chr8:10847834-10847914 2.71e-04 10_[+2(9.99e-06)]_23_[+4(2.00e-05)]_\ 31 chr14:67826475-67826555 1.51e-01 80 chr19:58874245-58874325 6.77e-01 80 chr12:69202730-69202810 3.07e-02 80 chr16:23464529-23464609 2.08e-01 80 chr10:75545930-75546010 3.26e-02 33_[+4(2.00e-05)]_9_[+4(2.00e-05)]_\ 9_[+4(2.00e-05)]_5 chr21:46237567-46237647 2.28e-01 80 chr22:19166574-19166654 1.31e-01 63_[+5(5.54e-05)]_9 chr17:1933397-1933477 4.99e-02 80 chr17:43394851-43394931 6.82e-02 80 chr1:20512568-20512648 8.73e-02 80 chr19:35760700-35760780 1.64e-02 80 chr16:14728051-14728131 1.90e-03 52_[+2(2.06e-05)]_20 chr15:41708926-41709006 3.42e-01 80 chr16:89992905-89992985 6.25e-03 7_[+1(7.81e-05)]_65 chr9:138391681-138391761 1.83e-01 80 chr7:150759521-150759601 1.42e-01 30_[+5(3.68e-05)]_42 chr17:8054576-8054656 1.34e-02 68_[+1(2.00e-05)]_4 chr19:2151836-2151916 6.01e-04 53_[+5(3.68e-05)]_19 chr16:67219387-67219467 4.01e-01 80 chr8:41908731-41908811 5.31e-02 55_[+3(9.69e-05)]_17 chr3:10501981-10502061 3.12e-04 25_[+4(2.00e-05)]_11_[+2(2.06e-05)]_\ 28 chr9:135282220-135282300 7.68e-01 80 chr19:13096201-13096281 5.09e-03 41_[+5(3.68e-05)]_31 chr15:42787713-42787793 1.65e-01 80 chr15:48623844-48623924 4.97e-02 34_[+4(8.06e-05)]_38 chr11:65194472-65194552 8.62e-01 80 chr7:100423085-100423165 2.11e-02 27_[+1(2.00e-05)]_45 chr12:122710991-12271107 1.95e-01 80 chr1:179335072-179335152 8.19e-01 80 chr6:33291301-33291381 9.82e-04 19_[+4(8.06e-05)]_53 chr6:42013459-42013539 4.26e-02 80 chr17:25409210-25409290 9.54e-01 80 chr5:72861552-72861632 4.73e-01 80 chr1:11919481-11919561 6.99e-03 48_[+4(8.06e-05)]_3_[+2(2.06e-05)]_\ 13 chr11:46414243-46414323 2.42e-02 22_[+1(7.81e-05)]_50 chr17:71088781-71088861 5.10e-02 66_[+5(5.54e-05)]_6 chr15:74284548-74284628 3.61e-01 80 chr16:88637244-88637324 1.25e-02 19_[+4(9.08e-05)]_53 chr2:32853167-32853247 1.39e-01 80 chr16:58718626-58718706 9.39e-02 80 chr19:44293341-44293421 5.85e-02 80 chr15:72612129-72612209 1.55e-03 10_[+4(8.06e-05)]_3_[+2(9.99e-06)]_\ 51 chr5:175815536-175815616 3.02e-02 80 chr17:7836516-7836596 1.71e-01 80 chr9:135457574-135457654 3.05e-03 [+2(4.03e-05)]_72 chr1:78245327-78245407 2.08e-02 80 chr7:1894809-1894889 2.10e-01 80 chr1:245026262-245026342 1.67e-01 30_[+5(7.54e-05)]_42 chr1:35390569-35390649 2.68e-02 51_[+1(7.81e-05)]_21 chr19:7627861-7627941 1.89e-04 20_[+1(7.81e-05)]_14_[+4(8.06e-05)]_\ 30 chr20:35012571-35012651 1.68e-02 15_[+2(2.06e-05)]_19_[+2(9.99e-06)]_\ 30 chr7:65541408-65541488 2.00e-02 12_[+5(7.54e-05)]_60 chr11:59328515-59328595 1.56e-03 80 chr1:100435944-100436024 7.09e-01 80 chr7:44645987-44646067 1.45e-01 80 chr16:89284100-89284180 2.44e-02 80 chr1:25758757-25758837 3.73e-03 80 chr2:29118228-29118308 1.60e-01 57_[+5(7.54e-05)]_15 chr20:3762030-3762110 1.50e-01 80 chr8:143955890-143955970 8.55e-04 5_[+1(7.81e-05)]_67 chr17:33469282-33469362 4.03e-02 21_[+5(3.68e-05)]_51 chr4:8430234-8430314 5.40e-01 80 chr5:137805112-137805192 9.01e-01 80 chr1:16302144-16302224 6.06e-02 80 chr21:47609212-47609292 1.54e-02 27_[+5(3.68e-05)]_6_[+5(5.54e-05)]_\ 31 chr1:156738221-156738301 5.91e-03 80 chr16:5083880-5083960 3.59e-01 80 chr16:53133845-53133925 1.73e-03 43_[+3(9.69e-05)]_29 chr4:81257038-81257118 9.10e-01 80 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************