******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/SAFB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:52545954-52546034 1.0000 80 chr10:126847486-12684756 1.0000 80 chr19:462117-462197 1.0000 80 chr20:62833303-62833383 1.0000 80 chr18:74534080-74534160 1.0000 80 chr7:1570995-1571075 1.0000 80 chr6:155540038-155540118 1.0000 80 chr19:1719108-1719188 1.0000 80 chr3:126075457-126075537 1.0000 80 chr5:1004830-1004910 1.0000 80 chr19:36450103-36450183 1.0000 80 chr3:27525727-27525807 1.0000 80 chr17:79114646-79114726 1.0000 80 chr8:42752070-42752150 1.0000 80 chr2:238969827-238969907 1.0000 80 chr20:62371423-62371503 1.0000 80 chr19:3359128-3359208 1.0000 80 chr10:80827868-80827948 1.0000 80 chr17:59489793-59489873 1.0000 80 chr6:134273244-134273324 1.0000 80 chr14:103059789-10305986 1.0000 80 chr9:139439893-139439973 1.0000 80 chr15:38856407-38856487 1.0000 80 chr10:112432259-11243233 1.0000 80 chr19:18528877-18528957 1.0000 80 chr13:114515834-11451591 1.0000 80 chr11:43964817-43964897 1.0000 80 chr2:69240090-69240170 1.0000 80 chr16:733930-734010 1.0000 80 chr7:26437903-26437983 1.0000 80 chr12:68043317-68043397 1.0000 80 chr1:875995-876075 1.0000 80 chr1:205649363-205649443 1.0000 80 chr4:967604-967684 1.0000 80 chr9:139886481-139886561 1.0000 80 chr15:66084355-66084435 1.0000 80 chr3:58163589-58163669 1.0000 80 chr22:49698499-49698579 1.0000 80 chr16:1383170-1383250 1.0000 80 chr5:852999-853079 1.0000 80 chr8:116660606-116660686 1.0000 80 chr7:26241917-26241997 1.0000 80 chr2:220253270-220253350 1.0000 80 chr10:35625481-35625561 1.0000 80 chr17:80656934-80657014 1.0000 80 chr19:18314361-18314441 1.0000 80 chr17:55162994-55163074 1.0000 80 chr22:31886100-31886180 1.0000 80 chr16:777346-777426 1.0000 80 chr8:2585430-2585510 1.0000 80 chr1:2398784-2398864 1.0000 80 chr8:144373207-144373287 1.0000 80 chr10:121302847-12130292 1.0000 80 chr1:975883-975963 1.0000 80 chr1:38512043-38512123 1.0000 80 chr22:46410117-46410197 1.0000 80 chr1:1225699-1225779 1.0000 80 chr13:36920535-36920615 1.0000 80 chr22:49564352-49564432 1.0000 80 chr4:6911571-6911651 1.0000 80 chr16:2524789-2524869 1.0000 80 chr5:131825882-131825962 1.0000 80 chr3:71632784-71632864 1.0000 80 chr17:79093244-79093324 1.0000 80 chr19:11253886-11253966 1.0000 80 chr19:10341117-10341197 1.0000 80 chr4:153858908-153858988 1.0000 80 chr17:2296824-2296904 1.0000 80 chr1:11540293-11540373 1.0000 80 chr5:133340659-133340739 1.0000 80 chr1:6268925-6269005 1.0000 80 chr2:100106392-100106472 1.0000 80 chr14:24521038-24521118 1.0000 80 chr18:46067274-46067354 1.0000 80 chr8:30769894-30769974 1.0000 80 chr7:151216128-151216208 1.0000 80 chr20:62130495-62130575 1.0000 80 chr3:11684379-11684459 1.0000 80 chr13:51484490-51484570 1.0000 80 chr19:2494612-2494692 1.0000 80 chr6:6009185-6009265 1.0000 80 chr2:223726202-223726282 1.0000 80 chr3:108836959-108837039 1.0000 80 chr11:69192088-69192168 1.0000 80 chr6:147829295-147829375 1.0000 80 chr9:127020624-127020704 1.0000 80 chr10:111986908-11198698 1.0000 80 chr7:77167152-77167232 1.0000 80 chr22:41940349-41940429 1.0000 80 chr13:111368306-11136838 1.0000 80 chr22:50964844-50964924 1.0000 80 chr1:154974222-154974302 1.0000 80 chrX:48555466-48555546 1.0000 80 chr22:38712975-38713055 1.0000 80 chr19:42787810-42787890 1.0000 80 chr6:43244179-43244259 1.0000 80 chr5:6583207-6583287 1.0000 80 chr9:139964934-139965014 1.0000 80 chr5:149110713-149110793 1.0000 80 chr17:29815080-29815160 1.0000 80 chr16:230753-230833 1.0000 80 chr9:139781234-139781314 1.0000 80 chr17:2295949-2296029 1.0000 80 chr7:158349652-158349732 1.0000 80 chr1:94312242-94312322 1.0000 80 chr11:126152887-12615296 1.0000 80 chr7:100494832-100494912 1.0000 80 chr1:7765133-7765213 1.0000 80 chr8:145734791-145734871 1.0000 80 chr16:432253-432333 1.0000 80 chr16:84001766-84001846 1.0000 80 chr19:10401953-10402033 1.0000 80 chr3:71631834-71631914 1.0000 80 chr3:126702279-126702359 1.0000 80 chrX:152201217-152201297 1.0000 80 chr9:14322722-14322802 1.0000 80 chr1:1136933-1137013 1.0000 80 chr3:52273329-52273409 1.0000 80 chr11:6291369-6291449 1.0000 80 chr5:142783207-142783287 1.0000 80 chr1:21978202-21978282 1.0000 80 chr14:37667129-37667209 1.0000 80 chr2:65216292-65216372 1.0000 80 chr6:170240380-170240460 1.0000 80 chr9:139240453-139240533 1.0000 80 chr17:79917735-79917815 1.0000 80 chr9:130661299-130661379 1.0000 80 chr22:46423309-46423389 1.0000 80 chr12:113495175-11349525 1.0000 80 chr5:74532793-74532873 1.0000 80 chr17:45918290-45918370 1.0000 80 chr16:2867839-2867919 1.0000 80 chr19:1266981-1267061 1.0000 80 chr19:1524419-1524499 1.0000 80 chr20:31331315-31331395 1.0000 80 chr22:46972552-46972632 1.0000 80 chr12:102091961-10209204 1.0000 80 chr9:4984922-4985002 1.0000 80 chr19:34288073-34288153 1.0000 80 chr18:72163898-72163978 1.0000 80 chr6:2971743-2971823 1.0000 80 chr8:11422128-11422208 1.0000 80 chr9:138371071-138371151 1.0000 80 chr21:35987035-35987115 1.0000 80 chr7:101929755-101929835 1.0000 80 chr4:15004590-15004670 1.0000 80 chr15:51200436-51200516 1.0000 80 chr2:242674271-242674351 1.0000 80 chr11:6440583-6440663 1.0000 80 chr16:451001-451081 1.0000 80 chr17:37558116-37558196 1.0000 80 chr7:1397511-1397591 1.0000 80 chr14:101121281-10112136 1.0000 80 chr9:123963492-123963572 1.0000 80 chr16:1833263-1833343 1.0000 80 chr8:41347827-41347907 1.0000 80 chr13:114145152-11414523 1.0000 80 chr7:100493180-100493260 1.0000 80 chr8:145752602-145752682 1.0000 80 chr11:575590-575670 1.0000 80 chr6:164758293-164758373 1.0000 80 chr15:74907180-74907260 1.0000 80 chr20:39765855-39765935 1.0000 80 chr4:37979459-37979539 1.0000 80 chr19:10398446-10398526 1.0000 80 chr4:38665491-38665571 1.0000 80 chr4:1581405-1581485 1.0000 80 chr2:173940493-173940573 1.0000 80 chr9:139606556-139606636 1.0000 80 chr7:92465018-92465098 1.0000 80 chr12:12877920-12878000 1.0000 80 chr10:25463469-25463549 1.0000 80 chr22:39152130-39152210 1.0000 80 chr4:1408957-1409037 1.0000 80 chr6:107436459-107436539 1.0000 80 chr19:17581388-17581468 1.0000 80 chr4:48485833-48485913 1.0000 80 chr2:219265367-219265447 1.0000 80 chr16:84964437-84964517 1.0000 80 chr19:17006716-17006796 1.0000 80 chr3:9932655-9932735 1.0000 80 chr4:129731033-129731113 1.0000 80 chr19:18899426-18899506 1.0000 80 chr5:175843167-175843247 1.0000 80 chr16:5083604-5083684 1.0000 80 chr2:242296046-242296126 1.0000 80 chr15:102029278-10202935 1.0000 80 chr6:107435561-107435641 1.0000 80 chr16:1970170-1970250 1.0000 80 chr17:74236663-74236743 1.0000 80 chr7:44122551-44122631 1.0000 80 chr11:288924-289004 1.0000 80 chr4:177241714-177241794 1.0000 80 chr15:89149088-89149168 1.0000 80 chr16:66639052-66639132 1.0000 80 chr21:44496527-44496607 1.0000 80 chr22:51170722-51170802 1.0000 80 chr2:845826-845906 1.0000 80 chr1:54411292-54411372 1.0000 80 chr19:56159766-56159846 1.0000 80 chr2:46843159-46843239 1.0000 80 chrX:40034987-40035067 1.0000 80 chr3:152880033-152880113 1.0000 80 chr17:48423192-48423272 1.0000 80 chr6:11537736-11537816 1.0000 80 chr4:109094405-109094485 1.0000 80 chr6:43739131-43739211 1.0000 80 chr16:89643026-89643106 1.0000 80 chr11:34073346-34073426 1.0000 80 chr7:100342955-100343035 1.0000 80 chr9:140563843-140563923 1.0000 80 chr19:33668375-33668455 1.0000 80 chr1:6051605-6051685 1.0000 80 chrX:153362828-153362908 1.0000 80 chr14:62217922-62218002 1.0000 80 chr20:62526396-62526476 1.0000 80 chr4:185746568-185746648 1.0000 80 chr17:17585745-17585825 1.0000 80 chr16:1358800-1358880 1.0000 80 chr7:151480199-151480279 1.0000 80 chr22:25801316-25801396 1.0000 80 chr6:110500835-110500915 1.0000 80 chr1:805218-805298 1.0000 80 chr19:17559549-17559629 1.0000 80 chr21:38446036-38446116 1.0000 80 chr1:27687122-27687202 1.0000 80 chr4:48781678-48781758 1.0000 80 chr5:6714113-6714193 1.0000 80 chr20:5107639-5107719 1.0000 80 chr20:62152139-62152219 1.0000 80 chr17:7747483-7747563 1.0000 80 chr5:72747297-72747377 1.0000 80 chr19:36390765-36390845 1.0000 80 chr9:140197237-140197317 1.0000 80 chr4:147443625-147443705 1.0000 80 chr7:148958931-148959011 1.0000 80 chr19:50037479-50037559 1.0000 80 chr19:2900417-2900497 1.0000 80 chr2:201374856-201374936 1.0000 80 chr16:1728685-1728765 1.0000 80 chr16:1202481-1202561 1.0000 80 chr2:189156379-189156459 1.0000 80 chr19:4552582-4552662 1.0000 80 chr19:17666706-17666786 1.0000 80 chr12:48099399-48099479 1.0000 80 chr9:128170785-128170865 1.0000 80 chr4:122618278-122618358 1.0000 80 chr22:50706314-50706394 1.0000 80 chr16:46865272-46865352 1.0000 80 chr19:1567336-1567416 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_SAFB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/SAFB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.127 C 0.367 G 0.379 T 0.127 Background letter frequencies (from file dataset with add-one prior applied): A 0.127 C 0.367 G 0.379 T 0.127 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CRCGCGTG MEME-1 width = 8 sites = 157 llr = 988 E-value = 9.5e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRCGCGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :5::1:1: pos.-specific C a1a19:2: probability G :3:9:a1a matrix T :1::::6: bits 3.0 2.7 2.4 2.1 Relative 1.8 Entropy 1.5 * * * * (9.1 bits) 1.2 * * ** * 0.9 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CACGCGTG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:6051605-6051685 48 4.34e-05 GAGCAGCCTG CACGCGTG GGGAAGGGCA chr19:56159766-56159846 47 4.34e-05 ggcgcACCCC CACGCGTG ACCTTTCCCC chr2:219265367-219265447 27 4.34e-05 AACTTCGCGT CACGCGTG GAGGCGCCGA chr4:1408957-1409037 38 4.34e-05 GCGGGGCATC CACGCGTG TCCGTGTCCG chr12:12877920-12878000 50 4.34e-05 cccggccTGT CACGCGTG GGGACACTGA chr4:1581405-1581485 44 4.34e-05 GAGCCACGGC CACGCGTG TCCCCAGGGC chr9:123963492-123963572 20 4.34e-05 GGCGGCGCGG CACGCGTG GGTACACCCT chr1:21978202-21978282 12 4.34e-05 GGCTCCCCCC CACGCGTG CACACGCACA chr1:94312242-94312322 10 4.34e-05 CAGCGCTCC CACGCGTG CTGACACCCT chr1:154974222-154974302 52 4.34e-05 GGGGCACCGT CACGCGTG GGGAGGGACG chr5:131825882-131825962 10 4.34e-05 CTGGGCGCC CACGCGTG GGCTGACACT chr16:2524789-2524869 49 4.34e-05 GTTCCGGATC CACGCGTG ACCCGGCCGG chr1:975883-975963 16 4.34e-05 TGAGCGCACG CACGCGTG TCCGTGTCCG chr19:18314361-18314441 46 4.34e-05 caggcgcgca cacgcgtg tgcacaccac chr10:35625481-35625561 57 4.34e-05 CCGGCGCGGA CACGCGTG CCCCCGGCTT chr8:116660606-116660686 40 4.34e-05 GGGCGCCGAG CACGCGTG GTGGCGGCCG chr22:49698499-49698579 46 4.34e-05 CAGGGAGACC CACGCGTG TTTACTGTCC chr16:733930-734010 38 4.34e-05 GCCCCAGCCC CACGCGTG CGCGCGAGGT chr2:69240090-69240170 41 4.34e-05 CCGCGGGTCC CACGCGTG CTTTCGCCGC chr7:1570995-1571075 63 4.34e-05 TGGCTGGGGT CACGCGTG CCCGGGAACG chr7:100342955-100343035 66 5.84e-05 GCGCGCTCCC CACGAGTG GCAGCCG chr2:845826-845906 48 5.84e-05 GGGTGTTTCC CACGAGTG TTCACAGGTG chr11:6291369-6291449 30 5.84e-05 CCACTGCAGG CACGAGTG TGGCAGACGC chr14:103059789-10305986 35 5.84e-05 CGCACACGCA CACGAGTG TTCTGCAAAC chr17:59489793-59489873 47 5.84e-05 CCGCCGGGAG CACGAGTG GGAGCGAACC chr19:50037479-50037559 35 1.88e-04 GGCCGAGCTT CGCGCGTG GATCGCGCAC chr20:5107639-5107719 22 1.88e-04 cgTGGGAGTC CGCGCGTG CCCGCGCCGA chr22:25801316-25801396 4 1.88e-04 CCT CGCGCGTG TCCCTGCATC chr2:46843159-46843239 38 1.88e-04 CACGCGCGCG CGCGCGTG GGCGGAGGGG chr17:74236663-74236743 64 1.88e-04 CTGGACTCGG CGCGCGTG GACGCGGCC chr4:129731033-129731113 53 1.88e-04 cgcgtgtgtc cgcgcgtg tccgcgtgtg chr19:17006716-17006796 25 1.88e-04 cacacacacg cgcgcgtg cgcccgcgcA chr22:39152130-39152210 51 1.88e-04 CCTAGGAGTC CGCGCGTG GGAGGCGCTG chr2:173940493-173940573 7 1.88e-04 CTCGCC CGCGCGTG TGAGGGGAGG chr3:52273329-52273409 34 1.88e-04 CGTGGGAGGA CGCGCGTG TGTGTCTGTG chrX:152201217-152201297 50 1.88e-04 TTGGGGTGAC CGCGCGTG GACCGTCGCC chr3:126702279-126702359 29 1.88e-04 GGGACTGCGG CGCGCGTG TCCGCGGCCC chr8:145734791-145734871 38 1.88e-04 CTCTCGCTGA CGCGCGTG GGGCTGGCCA chr5:149110713-149110793 54 1.88e-04 ACTGGCGACA CGCGCGTG ACAGGAGAGG chr19:42787810-42787890 17 1.88e-04 CGGGCCGAGC CGCGCGTG AGCGTGTTCC chr13:111368306-11136838 31 1.88e-04 AGGGTGGGGC CGCGCGTG GCCGTGGAAA chr10:111986908-11198698 67 1.88e-04 GTGAGGGGTG CGCGCGTG GGAGGG chr1:38512043-38512123 29 1.88e-04 GTGCACCAGG CGCGCGTG GAAACCTccg chr8:144373207-144373287 60 1.88e-04 CGGACGGGAA CGCGCGTG GCCGCCCCAC chr19:3359128-3359208 29 1.88e-04 CTGTAGGCGC CGCGCGTG GGGATCTCTG chr3:27525727-27525807 27 1.88e-04 GCGAGGTGTG CGCGCGTG GGGAGAGCCG chr19:36450103-36450183 69 1.88e-04 AGGCGGTGAA CGCGCGTG GGCG chr3:126075457-126075537 57 1.88e-04 GCGAAGGACT CGCGCGTG GAGCCGCCGT chr2:189156379-189156459 50 3.28e-04 GTTCCGCGTG CACGCGCG AGATAGTCCA chr16:1202481-1202561 58 3.28e-04 ccccATCACA CACGCGCG CGCGGGCACA chr4:185746568-185746648 47 3.28e-04 AGTCTCGCCC CACGCGCG GTCCGAACGC chr11:34073346-34073426 38 3.28e-04 CTCAGCTGCC CACTCGTG ATTTCCAGCG chr6:11537736-11537816 42 3.28e-04 CGCCGTCAGC CACGCGCG CTGCAGCGCG chr3:152880033-152880113 49 3.28e-04 GGACTCATGC CACGCGCG TCCCGGCCCG chr5:175843167-175843247 14 3.28e-04 GACTCACCCC CACTCGTG GGGCCCGGCT chr19:10398446-10398526 2 3.28e-04 C CACGCGCG CCTCAATCTC chr21:35987035-35987115 45 3.28e-04 CGTCCACGAA CACGCGCG GGTCCAGGTG chr9:4984922-4985002 19 3.28e-04 CAGGAATCTC CACGCGCG CTCGCCGGCT chr12:102091961-10209204 32 3.28e-04 AGGGCGGACC CACGCGCG GCTGAGCCTC chr17:2295949-2296029 34 3.28e-04 CACCCCGAAG CACGCGCG CACCCACGCG chr6:43244179-43244259 23 3.28e-04 CCGACACGCA CACGCGCG GCGCCGCCAC chrX:48555466-48555546 5 3.28e-04 CGCG CACGCGCG GGGGCTTGTC chr7:151216128-151216208 26 3.28e-04 CAGCCCCGGT CACGCGCG CCCGCGGCGA chr3:71632784-71632864 46 3.28e-04 ctcgcgcaca cacgcgcg cacacacgca chr22:31886100-31886180 24 3.28e-04 GCCGCGTTCC CACGCGCG CTGCAGGGCA chr15:66084355-66084435 53 3.28e-04 CGGAATCCCG CACGCGCG GTAGCGGAAC chr4:967604-967684 23 3.28e-04 CCGGACGCCG CACGCGCG GCGTTGTACC chr16:89643026-89643106 10 3.71e-04 GGTCACCAT CTCGCGTG AAACGCGTGG chr6:107436459-107436539 33 3.71e-04 GCGCTGCGCT CTCGCGTG ACGTGACGGG chr15:74907180-74907260 21 3.71e-04 GTTTCTAGCC CTCGCGTG GCGTGGGGAC chr5:6583207-6583287 11 3.71e-04 CGGCCCGGGA CTCGCGTG TCTCCCCGCG chr2:238969827-238969907 53 3.71e-04 TGTGGCCGCT CTCGCGTG GGGCGTCCCG chr20:62833303-62833383 66 3.71e-04 TCGGGAACCC CTCGCGTG TCGGGAA chr20:62152139-62152219 65 4.13e-04 CCGTCCCCGC CACCCGTG ATCGTGCG chr16:5083604-5083684 50 4.13e-04 TGCCGGCGCG CACCCGTG TGCAGTCCCG chr3:71631834-71631914 13 4.13e-04 CTCCCGCACC CACCCGTG GATCTGGCCA chr11:69192088-69192168 50 4.13e-04 tgcagacgcc cacccgtg aatgcacacg chr6:155540038-155540118 71 4.13e-04 CTCAGCCGCC CACCCGTG TT chr12:52545954-52546034 38 4.13e-04 GCGCCGCCTT CACCCGTG GCCTGCTCGG chr6:110500835-110500915 15 4.58e-04 GTGCTCGACG CGCGAGTG AACAACACCG chr10:25463469-25463549 2 4.58e-04 A CGCGAGTG GGTGCGAGGA chr1:7765133-7765213 68 4.58e-04 GCGTTTCTGG CGCGAGTG GGAAG chr15:38856407-38856487 41 4.58e-04 GCGGAAAGTC CGCGAGTG GGAGTCCCGA chr19:1567336-1567416 4 6.31e-04 GCC CACGCGGG GCGTGTCCGG chr19:4552582-4552662 52 6.31e-04 ACACTCGGGC CACGCGGG ACACCACCAC chr9:140197237-140197317 50 6.31e-04 GGCCTTCAGC CACGCGGG TCCTTCCCGC chr1:805218-805298 8 6.31e-04 ACTCCCC CACGCGGG GAAGGAGCTT chr17:17585745-17585825 51 6.31e-04 GGGCCCCGGA CACGCGAG CCTTGCGCCC chr6:43739131-43739211 15 6.31e-04 CTCCGTGCCC CACGCGGG TCCATGGGCA chr7:44122551-44122631 65 6.31e-04 GCAGGACCGA CACGCGGG TTTCCAAT chr15:102029278-10202935 71 6.31e-04 CGTGGGCGCC CACGCGGG AC chr9:138371071-138371151 15 6.31e-04 GCCGCGGGGA CACGCGGG GGCCGCCCCC chr19:34288073-34288153 47 6.31e-04 GGACCCTCCC CACGCGGG CGGTCTCGGA chr19:1266981-1267061 53 6.31e-04 CCCCCTCTCC CACGCGAG GCGTCTGCGT chr17:29815080-29815160 1 6.31e-04 . CACGCGGG TCTCCCGGCA chr2:223726202-223726282 16 6.31e-04 GCCCTGAGCC CACGCGAG CCGGGAGCTG chr13:51484490-51484570 64 6.31e-04 TGAGGGGAGC CACGCGGG TTCGCGGTC chr3:11684379-11684459 21 6.31e-04 CTTCCGGCCC CACGCGGG AGAGGGACAT chr14:24521038-24521118 39 6.31e-04 CCGGCCAGCT CACGCGGG AGCCAGCGAG chr5:133340659-133340739 62 6.31e-04 TGCGCAGGGA CACGCGGG TTCTTGCTGG chr1:875995-876075 6 6.31e-04 GTGGC CACGCGGG ACAGTGACCC chr19:1719108-1719188 41 6.31e-04 GCCCCCCACC CACGCGAG GCTGCAGCCC chr18:74534080-74534160 24 6.31e-04 GTGACGCGCG CACGCGAG TTCGCGGACA chr7:148958931-148959011 60 8.05e-04 CCTCCCGGCT CCCGCGTG GGACGCAGAG chr17:48423192-48423272 53 8.05e-04 CCGGCGGAGA CACGAGCG CAGAAGGCAC chr21:44496527-44496607 29 8.05e-04 TGCGCAGCGC CCCGCGTG ACCGCGCCCA chr2:242296046-242296126 12 8.05e-04 CGGGGAGTGG CCCGCGTG GACTCCCGGG chr3:9932655-9932735 69 8.05e-04 GGGATCCAGC CCCGCGTG GGCT chr7:92465018-92465098 32 8.05e-04 GACCGCGACT CCCGCGTG TGCGCACACG chr4:37979459-37979539 52 8.05e-04 GGAAGTCGAC CCCGCGTG TCTCCCTCGC chr15:51200436-51200516 37 8.05e-04 GCGCCGGGGA CCCGCGTG AAACCGCCTG chr8:11422128-11422208 64 8.05e-04 GCCAGGGAGT CCCGCGTG GTCTGGGCT chr9:130661299-130661379 52 8.05e-04 CCCCCACGAA CCCGCGTG GGAGGAGGGC chr9:139964934-139965014 7 8.05e-04 CGTCCA CCCGCGTG CGTCCCAGCG chr22:50964844-50964924 28 8.05e-04 GGCCTGAGTC CCCGCGTG TCCGCTGAGC chr5:1004830-1004910 60 8.05e-04 CCCAAGGCCG CACGAGCG CCAAGGCCTC chr22:46410117-46410197 61 8.20e-04 CACCCTGTGT CTCGAGTG GCACCCACGG chr17:7747483-7747563 53 8.94e-04 ATACGCGAGC CACGAGAG AGGGGCCACT chr19:10341117-10341197 3 8.94e-04 CC CACGAGGG GGACTGTGGG chr19:36390765-36390845 47 1.36e-03 CCGATCGTGG CGCTCGTG GAATCCCCGC chr1:27687122-27687202 7 1.36e-03 CCGCTC CGCTCGTG GCCCGGCTCA chr20:62526396-62526476 64 1.36e-03 CTTCCGGGAG CGCGCGCG CCGGTGCGG chr4:109094405-109094485 30 1.36e-03 GGGTCGGGGA CGCGCGCG GAAAGGCCGC chr1:54411292-54411372 63 1.36e-03 AGTCCGGGGT CGCGCGCG CTCCAACTCT chr4:177241714-177241794 42 1.36e-03 CGTCCGGTGC CGCTCGTG GTCCGCATGC chr20:39765855-39765935 24 1.36e-03 GTGACAGGGC CGCTCGTG GCCGCCGGGC chr2:242674271-242674351 1 1.36e-03 . CGCGCGCG CGTCCGCGGG chr5:74532793-74532873 32 1.36e-03 TGGGAGGCCG CGCGCGCG CGCGCAGGCC chr9:14322722-14322802 14 1.36e-03 CGGGAGCGGG CCCGAGTG GGTGTGGCGG chr9:127020624-127020704 62 1.36e-03 CTACCCACTT CCCGAGTG GGGACGACGG chr20:62130495-62130575 68 1.36e-03 ggggcgcgga cgcgcgcg ggcgg chr2:100106392-100106472 66 1.36e-03 CAACCAACCC CGCGCGCG CTCCGCG chr16:1383170-1383250 28 1.36e-03 CGTGGGGCGT CCCGAGTG GATCCCTGCA chr11:43964817-43964897 29 1.36e-03 gcggggggga cgcgcgcg tccgcggtcc chr13:114515834-11451591 14 1.36e-03 GGTCACAGGT CCCGAGTG GGTCACAGGC chr8:42752070-42752150 9 1.36e-03 CGCGCGGT CCCGAGTG AAAGGAGAAG chr6:164758293-164758373 4 1.52e-03 GGG CGCCCGTG TTTTCTCCTC chr4:153858908-153858988 46 1.52e-03 GTGGGCCGCC CACTCGCG TTCAGTTTGC chr22:49564352-49564432 44 1.52e-03 CATGGAGATC CGCCCGTG TACTCTGAAC chr4:147443625-147443705 10 2.18e-03 AGAGGTGTC CGCGCGGG AAAGTGGCTC chr5:72747297-72747377 60 2.18e-03 GAGCTCGGCC CGCGCGGG GAACTCGCCC chr4:48781678-48781758 56 2.18e-03 GAGAAGGCGG CGCGCGAG GGGTACCCGG chr17:79917735-79917815 35 2.18e-03 GGGAACGGGC CGCGCGGG GCTGTGGTCC chr7:77167152-77167232 24 2.18e-03 TCGCGACCCC CGCGCGGG TTCCCGGGAC chr4:6911571-6911651 28 2.18e-03 GCGTCCTCGT CGCGCGAG TTGCCGGTCC chr1:205649363-205649443 2 2.18e-03 T CGCGCGGG GCTCGGCGCG chr12:68043317-68043397 40 2.18e-03 gggTCGCGAA CTCGCGCG CCAGGGCCCC chr19:17666706-17666786 51 2.30e-03 GCGGCTGCGG CACCCGCG GGAGCGCACG chrX:153362828-153362908 40 2.30e-03 CGAGGACGGT CACCCGCG AGCACGGGTG chr2:65216292-65216372 60 2.30e-03 cccccTGCGG CACCCGCG ACACGGGTGG chr16:84001766-84001846 68 2.30e-03 GCTCGCTGGA CACCCGCG CTTCG chr7:100494832-100494912 46 2.30e-03 CAGGCACGGT CACCCGCG CTCCGCTCGC chr22:41940349-41940429 48 2.30e-03 ccacgccccg cACCCGCG CCACGTGCCG chr8:145752602-145752682 29 2.44e-03 ACTAGGCTGC CGCGAGCG CGGGTGGCGC chr3:58163589-58163669 59 2.44e-03 GAAATACGTC CGCGAGCG GAGTCCCTGC chr4:122618278-122618358 47 3.18e-03 TCCCGCTGGT CTCGCGGG CCTGGGTGGG chr16:1358800-1358880 59 3.18e-03 GTCCCGCGCG CTCGCGGG TCTGGGGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:6051605-6051685 4.3e-05 47_[+1]_25 chr19:56159766-56159846 4.3e-05 46_[+1]_26 chr2:219265367-219265447 4.3e-05 26_[+1]_46 chr4:1408957-1409037 4.3e-05 37_[+1]_35 chr12:12877920-12878000 4.3e-05 49_[+1]_23 chr4:1581405-1581485 4.3e-05 43_[+1]_29 chr9:123963492-123963572 4.3e-05 19_[+1]_53 chr1:21978202-21978282 4.3e-05 11_[+1]_61 chr1:94312242-94312322 4.3e-05 9_[+1]_63 chr1:154974222-154974302 4.3e-05 51_[+1]_21 chr5:131825882-131825962 4.3e-05 9_[+1]_63 chr16:2524789-2524869 4.3e-05 48_[+1]_24 chr1:975883-975963 4.3e-05 15_[+1]_57 chr19:18314361-18314441 4.3e-05 45_[+1]_27 chr10:35625481-35625561 4.3e-05 56_[+1]_16 chr8:116660606-116660686 4.3e-05 39_[+1]_33 chr22:49698499-49698579 4.3e-05 45_[+1]_27 chr16:733930-734010 4.3e-05 37_[+1]_35 chr2:69240090-69240170 4.3e-05 40_[+1]_32 chr7:1570995-1571075 4.3e-05 62_[+1]_10 chr7:100342955-100343035 5.8e-05 65_[+1]_7 chr2:845826-845906 5.8e-05 47_[+1]_25 chr11:6291369-6291449 5.8e-05 29_[+1]_43 chr14:103059789-10305986 5.8e-05 34_[+1]_38 chr17:59489793-59489873 5.8e-05 46_[+1]_26 chr19:50037479-50037559 0.00019 34_[+1]_38 chr20:5107639-5107719 0.00019 21_[+1]_51 chr22:25801316-25801396 0.00019 3_[+1]_69 chr2:46843159-46843239 0.00019 37_[+1]_35 chr17:74236663-74236743 0.00019 63_[+1]_9 chr4:129731033-129731113 0.00019 52_[+1]_20 chr19:17006716-17006796 0.00019 24_[+1]_48 chr22:39152130-39152210 0.00019 50_[+1]_22 chr2:173940493-173940573 0.00019 6_[+1]_66 chr3:52273329-52273409 0.00019 33_[+1]_39 chrX:152201217-152201297 0.00019 49_[+1]_23 chr3:126702279-126702359 0.00019 28_[+1]_44 chr8:145734791-145734871 0.00019 37_[+1]_35 chr5:149110713-149110793 0.00019 53_[+1]_19 chr19:42787810-42787890 0.00019 16_[+1]_56 chr13:111368306-11136838 0.00019 30_[+1]_42 chr10:111986908-11198698 0.00019 66_[+1]_6 chr1:38512043-38512123 0.00019 28_[+1]_44 chr8:144373207-144373287 0.00019 59_[+1]_13 chr19:3359128-3359208 0.00019 28_[+1]_44 chr3:27525727-27525807 0.00019 26_[+1]_46 chr19:36450103-36450183 0.00019 68_[+1]_4 chr3:126075457-126075537 0.00019 56_[+1]_16 chr2:189156379-189156459 0.00033 49_[+1]_23 chr16:1202481-1202561 0.00033 57_[+1]_15 chr4:185746568-185746648 0.00033 46_[+1]_26 chr11:34073346-34073426 0.00033 37_[+1]_35 chr6:11537736-11537816 0.00033 41_[+1]_31 chr3:152880033-152880113 0.00033 48_[+1]_24 chr5:175843167-175843247 0.00033 13_[+1]_59 chr19:10398446-10398526 0.00033 1_[+1]_71 chr21:35987035-35987115 0.00033 44_[+1]_28 chr9:4984922-4985002 0.00033 18_[+1]_54 chr12:102091961-10209204 0.00033 31_[+1]_41 chr17:2295949-2296029 0.00033 33_[+1]_39 chr6:43244179-43244259 0.00033 22_[+1]_50 chrX:48555466-48555546 0.00033 4_[+1]_68 chr7:151216128-151216208 0.00033 25_[+1]_47 chr3:71632784-71632864 0.00033 45_[+1]_27 chr22:31886100-31886180 0.00033 23_[+1]_49 chr15:66084355-66084435 0.00033 52_[+1]_20 chr4:967604-967684 0.00033 22_[+1]_50 chr16:89643026-89643106 0.00037 9_[+1]_63 chr6:107436459-107436539 0.00037 32_[+1]_40 chr15:74907180-74907260 0.00037 20_[+1]_52 chr5:6583207-6583287 0.00037 10_[+1]_62 chr2:238969827-238969907 0.00037 52_[+1]_20 chr20:62833303-62833383 0.00037 65_[+1]_7 chr20:62152139-62152219 0.00041 64_[+1]_8 chr16:5083604-5083684 0.00041 49_[+1]_23 chr3:71631834-71631914 0.00041 12_[+1]_60 chr11:69192088-69192168 0.00041 49_[+1]_23 chr6:155540038-155540118 0.00041 70_[+1]_2 chr12:52545954-52546034 0.00041 37_[+1]_35 chr6:110500835-110500915 0.00046 14_[+1]_58 chr10:25463469-25463549 0.00046 1_[+1]_71 chr1:7765133-7765213 0.00046 67_[+1]_5 chr15:38856407-38856487 0.00046 40_[+1]_32 chr19:1567336-1567416 0.00063 3_[+1]_69 chr19:4552582-4552662 0.00063 51_[+1]_21 chr9:140197237-140197317 0.00063 49_[+1]_23 chr1:805218-805298 0.00063 7_[+1]_65 chr17:17585745-17585825 0.00063 50_[+1]_22 chr6:43739131-43739211 0.00063 14_[+1]_58 chr7:44122551-44122631 0.00063 64_[+1]_8 chr15:102029278-10202935 0.00063 70_[+1]_2 chr9:138371071-138371151 0.00063 14_[+1]_58 chr19:34288073-34288153 0.00063 46_[+1]_26 chr19:1266981-1267061 0.00063 52_[+1]_20 chr17:29815080-29815160 0.00063 [+1]_72 chr2:223726202-223726282 0.00063 15_[+1]_57 chr13:51484490-51484570 0.00063 63_[+1]_9 chr3:11684379-11684459 0.00063 20_[+1]_52 chr14:24521038-24521118 0.00063 38_[+1]_34 chr5:133340659-133340739 0.00063 61_[+1]_11 chr1:875995-876075 0.00063 5_[+1]_67 chr19:1719108-1719188 0.00063 40_[+1]_32 chr18:74534080-74534160 0.00063 23_[+1]_49 chr7:148958931-148959011 0.0008 59_[+1]_13 chr17:48423192-48423272 0.0008 52_[+1]_20 chr21:44496527-44496607 0.0008 28_[+1]_44 chr2:242296046-242296126 0.0008 11_[+1]_61 chr3:9932655-9932735 0.0008 68_[+1]_4 chr7:92465018-92465098 0.0008 31_[+1]_41 chr4:37979459-37979539 0.0008 51_[+1]_21 chr15:51200436-51200516 0.0008 36_[+1]_36 chr8:11422128-11422208 0.0008 63_[+1]_9 chr9:130661299-130661379 0.0008 51_[+1]_21 chr9:139964934-139965014 0.0008 6_[+1]_66 chr22:50964844-50964924 0.0008 27_[+1]_45 chr5:1004830-1004910 0.0008 59_[+1]_13 chr22:46410117-46410197 0.00082 60_[+1]_12 chr17:7747483-7747563 0.00089 52_[+1]_20 chr19:10341117-10341197 0.00089 2_[+1]_70 chr19:36390765-36390845 0.0014 46_[+1]_26 chr1:27687122-27687202 0.0014 6_[+1]_66 chr20:62526396-62526476 0.0014 63_[+1]_9 chr4:109094405-109094485 0.0014 29_[+1]_43 chr1:54411292-54411372 0.0014 62_[+1]_10 chr4:177241714-177241794 0.0014 41_[+1]_31 chr20:39765855-39765935 0.0014 23_[+1]_49 chr2:242674271-242674351 0.0014 [+1]_72 chr5:74532793-74532873 0.0014 31_[+1]_41 chr9:14322722-14322802 0.0014 13_[+1]_59 chr9:127020624-127020704 0.0014 61_[+1]_11 chr20:62130495-62130575 0.0014 67_[+1]_5 chr2:100106392-100106472 0.0014 65_[+1]_7 chr16:1383170-1383250 0.0014 27_[+1]_45 chr11:43964817-43964897 0.0014 28_[+1]_44 chr13:114515834-11451591 0.0014 13_[+1]_59 chr8:42752070-42752150 0.0014 8_[+1]_64 chr6:164758293-164758373 0.0015 3_[+1]_69 chr4:153858908-153858988 0.0015 45_[+1]_27 chr22:49564352-49564432 0.0015 43_[+1]_29 chr4:147443625-147443705 0.0022 9_[+1]_63 chr5:72747297-72747377 0.0022 59_[+1]_13 chr4:48781678-48781758 0.0022 55_[+1]_17 chr17:79917735-79917815 0.0022 34_[+1]_38 chr7:77167152-77167232 0.0022 23_[+1]_49 chr4:6911571-6911651 0.0022 27_[+1]_45 chr1:205649363-205649443 0.0022 1_[+1]_71 chr12:68043317-68043397 0.0022 39_[+1]_33 chr19:17666706-17666786 0.0023 50_[+1]_22 chrX:153362828-153362908 0.0023 39_[+1]_33 chr2:65216292-65216372 0.0023 59_[+1]_13 chr16:84001766-84001846 0.0023 67_[+1]_5 chr7:100494832-100494912 0.0023 45_[+1]_27 chr22:41940349-41940429 0.0023 47_[+1]_25 chr8:145752602-145752682 0.0024 28_[+1]_44 chr3:58163589-58163669 0.0024 58_[+1]_14 chr4:122618278-122618358 0.0032 46_[+1]_26 chr16:1358800-1358880 0.0032 58_[+1]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRCGCGTG width=8 seqs=157 chr1:6051605-6051685 ( 48) CACGCGTG 1 chr19:56159766-56159846 ( 47) CACGCGTG 1 chr2:219265367-219265447 ( 27) CACGCGTG 1 chr4:1408957-1409037 ( 38) CACGCGTG 1 chr12:12877920-12878000 ( 50) CACGCGTG 1 chr4:1581405-1581485 ( 44) CACGCGTG 1 chr9:123963492-123963572 ( 20) CACGCGTG 1 chr1:21978202-21978282 ( 12) CACGCGTG 1 chr1:94312242-94312322 ( 10) CACGCGTG 1 chr1:154974222-154974302 ( 52) CACGCGTG 1 chr5:131825882-131825962 ( 10) CACGCGTG 1 chr16:2524789-2524869 ( 49) CACGCGTG 1 chr1:975883-975963 ( 16) CACGCGTG 1 chr19:18314361-18314441 ( 46) CACGCGTG 1 chr10:35625481-35625561 ( 57) CACGCGTG 1 chr8:116660606-116660686 ( 40) CACGCGTG 1 chr22:49698499-49698579 ( 46) CACGCGTG 1 chr16:733930-734010 ( 38) CACGCGTG 1 chr2:69240090-69240170 ( 41) CACGCGTG 1 chr7:1570995-1571075 ( 63) CACGCGTG 1 chr7:100342955-100343035 ( 66) CACGAGTG 1 chr2:845826-845906 ( 48) CACGAGTG 1 chr11:6291369-6291449 ( 30) CACGAGTG 1 chr14:103059789-10305986 ( 35) CACGAGTG 1 chr17:59489793-59489873 ( 47) CACGAGTG 1 chr19:50037479-50037559 ( 35) CGCGCGTG 1 chr20:5107639-5107719 ( 22) CGCGCGTG 1 chr22:25801316-25801396 ( 4) CGCGCGTG 1 chr2:46843159-46843239 ( 38) CGCGCGTG 1 chr17:74236663-74236743 ( 64) CGCGCGTG 1 chr4:129731033-129731113 ( 53) CGCGCGTG 1 chr19:17006716-17006796 ( 25) CGCGCGTG 1 chr22:39152130-39152210 ( 51) CGCGCGTG 1 chr2:173940493-173940573 ( 7) CGCGCGTG 1 chr3:52273329-52273409 ( 34) CGCGCGTG 1 chrX:152201217-152201297 ( 50) CGCGCGTG 1 chr3:126702279-126702359 ( 29) CGCGCGTG 1 chr8:145734791-145734871 ( 38) CGCGCGTG 1 chr5:149110713-149110793 ( 54) CGCGCGTG 1 chr19:42787810-42787890 ( 17) CGCGCGTG 1 chr13:111368306-11136838 ( 31) CGCGCGTG 1 chr10:111986908-11198698 ( 67) CGCGCGTG 1 chr1:38512043-38512123 ( 29) CGCGCGTG 1 chr8:144373207-144373287 ( 60) CGCGCGTG 1 chr19:3359128-3359208 ( 29) CGCGCGTG 1 chr3:27525727-27525807 ( 27) CGCGCGTG 1 chr19:36450103-36450183 ( 69) CGCGCGTG 1 chr3:126075457-126075537 ( 57) CGCGCGTG 1 chr2:189156379-189156459 ( 50) CACGCGCG 1 chr16:1202481-1202561 ( 58) CACGCGCG 1 chr4:185746568-185746648 ( 47) CACGCGCG 1 chr11:34073346-34073426 ( 38) CACTCGTG 1 chr6:11537736-11537816 ( 42) CACGCGCG 1 chr3:152880033-152880113 ( 49) CACGCGCG 1 chr5:175843167-175843247 ( 14) CACTCGTG 1 chr19:10398446-10398526 ( 2) CACGCGCG 1 chr21:35987035-35987115 ( 45) CACGCGCG 1 chr9:4984922-4985002 ( 19) CACGCGCG 1 chr12:102091961-10209204 ( 32) CACGCGCG 1 chr17:2295949-2296029 ( 34) CACGCGCG 1 chr6:43244179-43244259 ( 23) CACGCGCG 1 chrX:48555466-48555546 ( 5) CACGCGCG 1 chr7:151216128-151216208 ( 26) CACGCGCG 1 chr3:71632784-71632864 ( 46) CACGCGCG 1 chr22:31886100-31886180 ( 24) CACGCGCG 1 chr15:66084355-66084435 ( 53) CACGCGCG 1 chr4:967604-967684 ( 23) CACGCGCG 1 chr16:89643026-89643106 ( 10) CTCGCGTG 1 chr6:107436459-107436539 ( 33) CTCGCGTG 1 chr15:74907180-74907260 ( 21) CTCGCGTG 1 chr5:6583207-6583287 ( 11) CTCGCGTG 1 chr2:238969827-238969907 ( 53) CTCGCGTG 1 chr20:62833303-62833383 ( 66) CTCGCGTG 1 chr20:62152139-62152219 ( 65) CACCCGTG 1 chr16:5083604-5083684 ( 50) CACCCGTG 1 chr3:71631834-71631914 ( 13) CACCCGTG 1 chr11:69192088-69192168 ( 50) CACCCGTG 1 chr6:155540038-155540118 ( 71) CACCCGTG 1 chr12:52545954-52546034 ( 38) CACCCGTG 1 chr6:110500835-110500915 ( 15) CGCGAGTG 1 chr10:25463469-25463549 ( 2) CGCGAGTG 1 chr1:7765133-7765213 ( 68) CGCGAGTG 1 chr15:38856407-38856487 ( 41) CGCGAGTG 1 chr19:1567336-1567416 ( 4) CACGCGGG 1 chr19:4552582-4552662 ( 52) CACGCGGG 1 chr9:140197237-140197317 ( 50) CACGCGGG 1 chr1:805218-805298 ( 8) CACGCGGG 1 chr17:17585745-17585825 ( 51) CACGCGAG 1 chr6:43739131-43739211 ( 15) CACGCGGG 1 chr7:44122551-44122631 ( 65) CACGCGGG 1 chr15:102029278-10202935 ( 71) CACGCGGG 1 chr9:138371071-138371151 ( 15) CACGCGGG 1 chr19:34288073-34288153 ( 47) CACGCGGG 1 chr19:1266981-1267061 ( 53) CACGCGAG 1 chr17:29815080-29815160 ( 1) CACGCGGG 1 chr2:223726202-223726282 ( 16) CACGCGAG 1 chr13:51484490-51484570 ( 64) CACGCGGG 1 chr3:11684379-11684459 ( 21) CACGCGGG 1 chr14:24521038-24521118 ( 39) CACGCGGG 1 chr5:133340659-133340739 ( 62) CACGCGGG 1 chr1:875995-876075 ( 6) CACGCGGG 1 chr19:1719108-1719188 ( 41) CACGCGAG 1 chr18:74534080-74534160 ( 24) CACGCGAG 1 chr7:148958931-148959011 ( 60) CCCGCGTG 1 chr17:48423192-48423272 ( 53) CACGAGCG 1 chr21:44496527-44496607 ( 29) CCCGCGTG 1 chr2:242296046-242296126 ( 12) CCCGCGTG 1 chr3:9932655-9932735 ( 69) CCCGCGTG 1 chr7:92465018-92465098 ( 32) CCCGCGTG 1 chr4:37979459-37979539 ( 52) CCCGCGTG 1 chr15:51200436-51200516 ( 37) CCCGCGTG 1 chr8:11422128-11422208 ( 64) CCCGCGTG 1 chr9:130661299-130661379 ( 52) CCCGCGTG 1 chr9:139964934-139965014 ( 7) CCCGCGTG 1 chr22:50964844-50964924 ( 28) CCCGCGTG 1 chr5:1004830-1004910 ( 60) CACGAGCG 1 chr22:46410117-46410197 ( 61) CTCGAGTG 1 chr17:7747483-7747563 ( 53) CACGAGAG 1 chr19:10341117-10341197 ( 3) CACGAGGG 1 chr19:36390765-36390845 ( 47) CGCTCGTG 1 chr1:27687122-27687202 ( 7) CGCTCGTG 1 chr20:62526396-62526476 ( 64) CGCGCGCG 1 chr4:109094405-109094485 ( 30) CGCGCGCG 1 chr1:54411292-54411372 ( 63) CGCGCGCG 1 chr4:177241714-177241794 ( 42) CGCTCGTG 1 chr20:39765855-39765935 ( 24) CGCTCGTG 1 chr2:242674271-242674351 ( 1) CGCGCGCG 1 chr5:74532793-74532873 ( 32) CGCGCGCG 1 chr9:14322722-14322802 ( 14) CCCGAGTG 1 chr9:127020624-127020704 ( 62) CCCGAGTG 1 chr20:62130495-62130575 ( 68) CGCGCGCG 1 chr2:100106392-100106472 ( 66) CGCGCGCG 1 chr16:1383170-1383250 ( 28) CCCGAGTG 1 chr11:43964817-43964897 ( 29) CGCGCGCG 1 chr13:114515834-11451591 ( 14) CCCGAGTG 1 chr8:42752070-42752150 ( 9) CCCGAGTG 1 chr6:164758293-164758373 ( 4) CGCCCGTG 1 chr4:153858908-153858988 ( 46) CACTCGCG 1 chr22:49564352-49564432 ( 44) CGCCCGTG 1 chr4:147443625-147443705 ( 10) CGCGCGGG 1 chr5:72747297-72747377 ( 60) CGCGCGGG 1 chr4:48781678-48781758 ( 56) CGCGCGAG 1 chr17:79917735-79917815 ( 35) CGCGCGGG 1 chr7:77167152-77167232 ( 24) CGCGCGGG 1 chr4:6911571-6911651 ( 28) CGCGCGAG 1 chr1:205649363-205649443 ( 2) CGCGCGGG 1 chr12:68043317-68043397 ( 40) CTCGCGCG 1 chr19:17666706-17666786 ( 51) CACCCGCG 1 chrX:153362828-153362908 ( 40) CACCCGCG 1 chr2:65216292-65216372 ( 60) CACCCGCG 1 chr16:84001766-84001846 ( 68) CACCCGCG 1 chr7:100494832-100494912 ( 46) CACCCGCG 1 chr22:41940349-41940429 ( 48) CACCCGCG 1 chr8:145752602-145752682 ( 29) CGCGAGCG 1 chr3:58163589-58163669 ( 59) CGCGAGCG 1 chr4:122618278-122618358 ( 47) CTCGCGGG 1 chr16:1358800-1358880 ( 59) CTCGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.68614 E= 9.5e-040 -1394 145 -1394 -1394 202 -185 -25 -100 -1394 145 -1394 -1394 -1394 -204 119 -152 8 124 -1394 -1394 -1394 -1394 140 -1394 -131 -64 -137 215 -1394 -1394 140 -1394 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 157 E= 9.5e-040 0.000000 1.000000 0.000000 0.000000 0.515924 0.101911 0.318471 0.063694 0.000000 1.000000 0.000000 0.000000 0.000000 0.089172 0.866242 0.044586 0.133758 0.866242 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.050955 0.235669 0.146497 0.566879 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCGCGTG MEME-1 regular expression -------------------------------------------------------------------------------- C[AG]CGCG[TC]G -------------------------------------------------------------------------------- Time 5.10 secs. ******************************************************************************** ******************************************************************************** MOTIF TTHWSTYT MEME-2 width = 8 sites = 11 llr = 115 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTHWSTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::34:::: pos.-specific C 2:4:6:3: probability G ::::4:2: matrix T 8a46:a5a bits 3.0 * * * 2.7 * * * 2.4 * * * 2.1 ** * * * Relative 1.8 ** * * * Entropy 1.5 ** * * * (15.1 bits) 1.2 ** * * * 0.9 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTCTCTTT consensus TAG C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHWSTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:1833263-1833343 26 1.19e-06 GCTTTTAAAG TTAACTTT GTTGAGCACC chr12:68043317-68043397 60 1.19e-06 AGGGCCCCAC TTAACTTT GCAGCTGCCC chr16:777346-777426 21 1.95e-06 GGAGCCGGGC TTCTCTTT TGGCCCCCAG chr4:147443625-147443705 46 4.43e-06 GCGGGGAGCC TTATCTCT GGCGGTGGGT chr4:153858908-153858988 54 5.60e-06 CCCACTCGCG TTCAGTTT GCTGACCCCA chr16:1728685-1728765 54 6.75e-06 GTGCGGCCCA TTTTGTCT GTGGGATGCG chr21:38446036-38446116 18 1.02e-05 TCGTCGCCCC TTTTGTGT CGGTGTCCGC chr22:49698499-49698579 54 1.02e-05 CCCACGCGTG TTTACTGT CCGGCACAGG chr2:189156379-189156459 8 1.30e-05 GATGGGT TTCTCTCT CATTCCACCC chr7:26241917-26241997 34 1.59e-05 GTGCCGCGGC CTTTGTTT CTCCCCGCGG chr6:107436459-107436539 3 2.55e-05 CC CTCTCTTT GTGTGTGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHWSTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:1833263-1833343 1.2e-06 25_[+2]_47 chr12:68043317-68043397 1.2e-06 59_[+2]_13 chr16:777346-777426 2e-06 20_[+2]_52 chr4:147443625-147443705 4.4e-06 45_[+2]_27 chr4:153858908-153858988 5.6e-06 53_[+2]_19 chr16:1728685-1728765 6.8e-06 53_[+2]_19 chr21:38446036-38446116 1e-05 17_[+2]_55 chr22:49698499-49698579 1e-05 53_[+2]_19 chr2:189156379-189156459 1.3e-05 7_[+2]_65 chr7:26241917-26241997 1.6e-05 33_[+2]_39 chr6:107436459-107436539 2.6e-05 2_[+2]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHWSTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTHWSTYT width=8 seqs=11 chr16:1833263-1833343 ( 26) TTAACTTT 1 chr12:68043317-68043397 ( 60) TTAACTTT 1 chr16:777346-777426 ( 21) TTCTCTTT 1 chr4:147443625-147443705 ( 46) TTATCTCT 1 chr4:153858908-153858988 ( 54) TTCAGTTT 1 chr16:1728685-1728765 ( 54) TTTTGTCT 1 chr21:38446036-38446116 ( 18) TTTTGTGT 1 chr22:49698499-49698579 ( 54) TTTACTGT 1 chr2:189156379-189156459 ( 8) TTCTCTCT 1 chr7:26241917-26241997 ( 34) CTTTGTTT 1 chr6:107436459-107436539 ( 3) CTCTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHWSTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 1.8e+002 -1010 -101 -1010 268 -1010 -1010 -1010 297 110 -1 -1010 151 152 -1010 -1010 232 -1010 79 -6 -1010 -1010 -1010 -1010 297 -1010 -43 -106 210 -1010 -1010 -1010 297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHWSTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.8e+002 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.000000 1.000000 0.272727 0.363636 0.000000 0.363636 0.363636 0.000000 0.000000 0.636364 0.000000 0.636364 0.363636 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.181818 0.545455 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTHWSTYT MEME-2 regular expression -------------------------------------------------------------------------------- TT[CTA][TA][CG]T[TC]T -------------------------------------------------------------------------------- Time 8.61 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAMACT MEME-3 width = 8 sites = 9 llr = 97 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAMACT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a1a7a:1 pos.-specific C 7:6:3:a: probability G ::2::::: matrix T 3:1::::9 bits 3.0 * * * 2.7 * * * 2.4 * * * * 2.1 * * * * Relative 1.8 * * * * Entropy 1.5 * ***** (15.6 bits) 1.2 * ***** 0.9 ** ***** 0.6 ** ***** 0.3 ** ***** 0.0 -------- Multilevel CACAAACT consensus T G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:30769894-30769974 53 5.65e-07 TTCTGCTGAC TACAAACT GCGCCTCCAG chr2:219265367-219265447 13 2.20e-06 CTACGTTCCC CACAAACT TCGCGTCACG chr7:1397511-1397591 48 2.59e-06 GACCCAAGGC TATAAACT GGGAGGGGCC chr1:11540293-11540373 53 3.17e-06 GCGGCCGCCC TAGAAACT CAGAAGCCcg chr3:11684379-11684459 71 4.30e-06 CTCGCGAGCA CAAAAACT CG chr5:142783207-142783287 56 1.29e-05 CCACGGCGCG CACACACT CGCACACACG chr3:71632784-71632864 26 1.29e-05 gcaccccgcg cacacact cactcgcgca chr19:18528877-18528957 1 1.29e-05 . CACACACT TGTGCACGCA chr2:845826-845906 68 2.93e-05 CACAGGTGCA CAGAAACA CGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:30769894-30769974 5.7e-07 52_[+3]_20 chr2:219265367-219265447 2.2e-06 12_[+3]_60 chr7:1397511-1397591 2.6e-06 47_[+3]_25 chr1:11540293-11540373 3.2e-06 52_[+3]_20 chr3:11684379-11684459 4.3e-06 70_[+3]_2 chr5:142783207-142783287 1.3e-05 55_[+3]_17 chr3:71632784-71632864 1.3e-05 25_[+3]_47 chr19:18528877-18528957 1.3e-05 [+3]_72 chr2:845826-845906 2.9e-05 67_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAMACT width=8 seqs=9 chr8:30769894-30769974 ( 53) TACAAACT 1 chr2:219265367-219265447 ( 13) CACAAACT 1 chr7:1397511-1397591 ( 48) TATAAACT 1 chr1:11540293-11540373 ( 53) TAGAAACT 1 chr3:11684379-11684459 ( 71) CAAAAACT 1 chr5:142783207-142783287 ( 56) CACACACT 1 chr3:71632784-71632864 ( 26) CACACACT 1 chr19:18528877-18528957 ( 1) CACACACT 1 chr2:845826-845906 ( 68) CAGAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 2.0e+002 -982 86 -982 139 298 -982 -982 -982 -19 60 -77 -20 298 -982 -982 -982 239 -14 -982 -982 298 -982 -982 -982 -982 145 -982 -982 -19 -982 -982 280 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.0e+002 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.111111 0.555556 0.222222 0.111111 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAMACT MEME-3 regular expression -------------------------------------------------------------------------------- [CT]A[CG]A[AC]ACT -------------------------------------------------------------------------------- Time 12.15 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTYYGT MEME-4 width = 8 sites = 19 llr = 173 E-value = 6.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTYYGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C :1::55:: probability G a:a:2:8: matrix T :9:7352a bits 3.0 * 2.7 * * 2.4 * * 2.1 * * * Relative 1.8 * * * Entropy 1.5 **** * (13.1 bits) 1.2 **** * * 0.9 **** *** 0.6 **** *** 0.3 ******** 0.0 -------- Multilevel GTGTCCGT consensus ATT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTYYGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:451001-451081 21 2.40e-06 GCGGCCCTGC GTGTTTTT CCCCCGTGGC chr4:38665491-38665571 72 7.60e-06 GGAATAATGA GTGTCTGT C chr3:52273329-52273409 43 7.60e-06 ACGCGCGTGT GTGTCTGT GCGCCCTGAT chr4:48485833-48485913 64 1.28e-05 CGGGCTGAAC GTGTTCGT GGGCGCCGC chr11:6291369-6291449 65 1.46e-05 CGCGGCTCGC GTGATTGT AGCCACGT chr6:107436459-107436539 11 2.34e-05 CCCTCTCTTT GTGTGTGT CCGTGCGCTG chr6:155540038-155540118 47 2.34e-05 CCGCCCACCC GTGTTCTT GACCATCTCA chr10:126847486-12684756 1 2.34e-05 . GTGTGTGT CTCGGCGCGG chr9:128170785-128170865 45 3.91e-05 GCTCTGGGCT GTGTCCGT CGGCCGTGTG chr4:1408957-1409037 49 3.91e-05 ACGCGTGTCC GTGTCCGT GTGTGACCGC chr19:1524419-1524499 25 3.91e-05 GCTGTGCGTC GTGTCCGT GGGTTGCGTG chr1:975883-975963 27 3.91e-05 ACGCGTGTCC GTGTCCGT GGTGGACCCC chr2:173940493-173940573 69 4.43e-05 TGCTGTTGCC GTGACTGT CTTC chr10:112432259-11243233 3 4.95e-05 CC GTGATCGT CAGCCAAAGC chr6:147829295-147829375 40 5.63e-05 GCGGCGGGAC GTGTCCTT GGGCTGCCAG chr5:133340659-133340739 45 7.35e-05 TGTGCACCGT GTGTGCGT GCGCAGGGAC chr7:100493180-100493260 66 8.07e-05 GTGGGCGTCG GTGAGTGT GAGGCGG chrX:48555466-48555546 61 9.57e-05 TCGGCCCCTG GTGACCGT TACCCATTCG chr9:139240453-139240533 46 1.28e-04 CCTGCCCCGG GCGTTTGT GTTGGGAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTYYGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:451001-451081 2.4e-06 20_[+4]_52 chr4:38665491-38665571 7.6e-06 71_[+4]_1 chr3:52273329-52273409 7.6e-06 42_[+4]_30 chr4:48485833-48485913 1.3e-05 63_[+4]_9 chr11:6291369-6291449 1.5e-05 64_[+4]_8 chr6:107436459-107436539 2.3e-05 10_[+4]_62 chr6:155540038-155540118 2.3e-05 46_[+4]_26 chr10:126847486-12684756 2.3e-05 [+4]_72 chr9:128170785-128170865 3.9e-05 44_[+4]_28 chr4:1408957-1409037 3.9e-05 48_[+4]_24 chr19:1524419-1524499 3.9e-05 24_[+4]_48 chr1:975883-975963 3.9e-05 26_[+4]_46 chr2:173940493-173940573 4.4e-05 68_[+4]_4 chr10:112432259-11243233 4.9e-05 2_[+4]_70 chr6:147829295-147829375 5.6e-05 39_[+4]_33 chr5:133340659-133340739 7.4e-05 44_[+4]_28 chr7:100493180-100493260 8.1e-05 65_[+4]_7 chrX:48555466-48555546 9.6e-05 60_[+4]_12 chr9:139240453-139240533 0.00013 45_[+4]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTYYGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTYYGT width=8 seqs=19 chr16:451001-451081 ( 21) GTGTTTTT 1 chr4:38665491-38665571 ( 72) GTGTCTGT 1 chr3:52273329-52273409 ( 43) GTGTCTGT 1 chr4:48485833-48485913 ( 64) GTGTTCGT 1 chr11:6291369-6291449 ( 65) GTGATTGT 1 chr6:107436459-107436539 ( 11) GTGTGTGT 1 chr6:155540038-155540118 ( 47) GTGTTCTT 1 chr10:126847486-12684756 ( 1) GTGTGTGT 1 chr9:128170785-128170865 ( 45) GTGTCCGT 1 chr4:1408957-1409037 ( 49) GTGTCCGT 1 chr19:1524419-1524499 ( 25) GTGTCCGT 1 chr1:975883-975963 ( 27) GTGTCCGT 1 chr2:173940493-173940573 ( 69) GTGACTGT 1 chr10:112432259-11243233 ( 3) GTGATCGT 1 chr6:147829295-147829375 ( 40) GTGTCCTT 1 chr5:133340659-133340739 ( 45) GTGTGCGT 1 chr7:100493180-100493260 ( 66) GTGAGTGT 1 chrX:48555466-48555546 ( 61) GTGACCGT 1 chr9:139240453-139240533 ( 46) GCGTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTYYGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 6.0e+003 -1089 -1089 140 -1089 -1089 -280 -1089 289 -1089 -1089 140 -1089 105 -1089 -1089 253 -1089 37 -85 131 -1089 52 -1089 189 -1089 -1089 115 31 -1089 -1089 -1089 297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTYYGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.052632 0.000000 0.947368 0.000000 0.000000 1.000000 0.000000 0.263158 0.000000 0.000000 0.736842 0.000000 0.473684 0.210526 0.315789 0.000000 0.526316 0.000000 0.473684 0.000000 0.000000 0.842105 0.157895 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTYYGT MEME-4 regular expression -------------------------------------------------------------------------------- GTG[TA][CTG][CT]GT -------------------------------------------------------------------------------- Time 15.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGAAAA MEME-5 width = 8 sites = 4 llr = 50 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::aaa8 pos.-specific C :::::::: probability G a:8a:::: matrix T :a3::::3 bits 3.0 * *** 2.7 * *** 2.4 * *** 2.1 * **** Relative 1.8 * **** Entropy 1.5 ** ***** (17.9 bits) 1.2 ** ***** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGGAAAA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:147443625-147443705 62 2.40e-06 CTGGCGGTGG GTTGAAAA TCCGGCGCCG chr17:37558116-37558196 42 2.40e-06 GCCTGTGCGT GTGGAAAA GGGGGTCTGT chr17:79917735-79917815 53 2.40e-06 GCTGTGGTCC GTGGAAAA TCCCCACGTT chr19:10341117-10341197 72 4.80e-06 AGAGGAGGGG GTGGAAAT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:147443625-147443705 2.4e-06 61_[+5]_11 chr17:37558116-37558196 2.4e-06 41_[+5]_31 chr17:79917735-79917815 2.4e-06 52_[+5]_20 chr19:10341117-10341197 4.8e-06 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGAAAA width=8 seqs=4 chr4:147443625-147443705 ( 62) GTTGAAAA 1 chr17:37558116-37558196 ( 42) GTGGAAAA 1 chr17:79917735-79917815 ( 53) GTGGAAAA 1 chr19:10341117-10341197 ( 72) GTGGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.7e+004 -865 -865 140 -865 -865 -865 -865 297 -865 -865 98 97 -865 -865 140 -865 298 -865 -865 -865 298 -865 -865 -865 298 -865 -865 -865 256 -865 -865 97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- GT[GT]GAAA[AT] -------------------------------------------------------------------------------- Time 19.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:52545954-52546034 4.40e-01 80 chr10:126847486-12684756 6.19e-02 [+4(2.34e-05)]_72 chr19:462117-462197 7.92e-01 80 chr20:62833303-62833383 3.76e-01 80 chr18:74534080-74534160 3.81e-01 80 chr7:1570995-1571075 1.83e-01 62_[+1(4.34e-05)]_10 chr6:155540038-155540118 4.76e-03 17_[+4(2.34e-05)]_21_[+4(2.34e-05)]_\ 26 chr19:1719108-1719188 4.31e-01 80 chr3:126075457-126075537 6.24e-02 80 chr5:1004830-1004910 4.48e-01 80 chr19:36450103-36450183 1.39e-01 80 chr3:27525727-27525807 5.03e-02 80 chr17:79114646-79114726 7.29e-01 80 chr8:42752070-42752150 2.51e-01 80 chr2:238969827-238969907 3.27e-01 80 chr20:62371423-62371503 3.11e-03 80 chr19:3359128-3359208 1.81e-04 4_[+4(3.91e-05)]_37_[+4(3.91e-05)]_\ 5_[+4(2.34e-05)]_[+4(3.91e-05)]_2 chr10:80827868-80827948 3.95e-01 80 chr17:59489793-59489873 8.20e-02 46_[+1(5.84e-05)]_26 chr6:134273244-134273324 5.42e-01 80 chr14:103059789-10305986 3.64e-03 34_[+1(5.84e-05)]_38 chr9:139439893-139439973 4.69e-01 80 chr15:38856407-38856487 2.06e-02 80 chr10:112432259-11243233 6.65e-02 2_[+4(4.95e-05)]_70 chr19:18528877-18528957 3.37e-02 [+3(1.29e-05)]_72 chr13:114515834-11451591 7.02e-01 80 chr11:43964817-43964897 4.57e-01 80 chr2:69240090-69240170 6.12e-04 40_[+1(4.34e-05)]_32 chr16:733930-734010 1.20e-01 37_[+1(4.34e-05)]_35 chr7:26437903-26437983 1.17e-01 80 chr12:68043317-68043397 1.18e-03 59_[+2(1.19e-06)]_13 chr1:875995-876075 9.35e-02 80 chr1:205649363-205649443 2.20e-01 80 chr4:967604-967684 2.85e-01 80 chr9:139886481-139886561 8.36e-01 80 chr15:66084355-66084435 2.91e-01 80 chr3:58163589-58163669 3.09e-01 80 chr22:49698499-49698579 7.19e-05 13_[+1(4.34e-05)]_24_[+1(4.34e-05)]_\ [+2(1.02e-05)]_19 chr16:1383170-1383250 3.03e-01 80 chr5:852999-853079 9.65e-01 80 chr8:116660606-116660686 1.84e-01 39_[+1(4.34e-05)]_33 chr7:26241917-26241997 1.94e-02 33_[+2(1.59e-05)]_39 chr2:220253270-220253350 8.95e-01 80 chr10:35625481-35625561 1.19e-01 56_[+1(4.34e-05)]_16 chr17:80656934-80657014 9.59e-01 80 chr19:18314361-18314441 1.71e-02 45_[+1(4.34e-05)]_27 chr17:55162994-55163074 6.34e-01 80 chr22:31886100-31886180 6.32e-01 80 chr16:777346-777426 9.76e-03 20_[+2(1.95e-06)]_52 chr8:2585430-2585510 7.75e-01 80 chr1:2398784-2398864 6.35e-01 80 chr8:144373207-144373287 3.20e-01 80 chr10:121302847-12130292 9.86e-01 80 chr1:975883-975963 2.25e-03 20_[+4(3.91e-05)]_52 chr1:38512043-38512123 4.24e-03 33_[+5(3.15e-05)]_39 chr22:46410117-46410197 1.22e-01 80 chr1:1225699-1225779 7.40e-01 80 chr13:36920535-36920615 9.61e-01 80 chr22:49564352-49564432 8.17e-03 80 chr4:6911571-6911651 8.28e-01 80 chr16:2524789-2524869 1.63e-01 48_[+1(4.34e-05)]_24 chr5:131825882-131825962 1.32e-02 9_[+1(4.34e-05)]_63 chr3:71632784-71632864 4.92e-03 25_[+3(1.29e-05)]_47 chr17:79093244-79093324 7.94e-01 80 chr19:11253886-11253966 5.90e-01 80 chr19:10341117-10341197 4.75e-04 71_[+5(4.80e-06)]_1 chr4:153858908-153858988 3.04e-03 53_[+2(5.60e-06)]_19 chr17:2296824-2296904 4.97e-01 80 chr1:11540293-11540373 2.26e-02 52_[+3(3.17e-06)]_20 chr5:133340659-133340739 2.47e-02 44_[+4(7.35e-05)]_28 chr1:6268925-6269005 2.81e-01 80 chr2:100106392-100106472 5.34e-01 80 chr14:24521038-24521118 4.19e-01 80 chr18:46067274-46067354 3.32e-01 80 chr8:30769894-30769974 5.35e-03 52_[+3(5.65e-07)]_20 chr7:151216128-151216208 3.92e-01 80 chr20:62130495-62130575 8.07e-01 80 chr3:11684379-11684459 1.31e-04 70_[+3(4.30e-06)]_2 chr13:51484490-51484570 8.55e-02 80 chr19:2494612-2494692 2.31e-01 80 chr6:6009185-6009265 9.36e-01 80 chr2:223726202-223726282 7.00e-01 80 chr3:108836959-108837039 3.64e-01 80 chr11:69192088-69192168 2.02e-01 80 chr6:147829295-147829375 8.03e-02 39_[+4(5.63e-05)]_33 chr9:127020624-127020704 4.93e-02 80 chr10:111986908-11198698 5.17e-02 80 chr7:77167152-77167232 6.52e-01 80 chr22:41940349-41940429 9.45e-01 80 chr13:111368306-11136838 6.04e-04 41_[+5(3.15e-05)]_31 chr22:50964844-50964924 3.76e-01 80 chr1:154974222-154974302 3.69e-02 51_[+1(4.34e-05)]_21 chrX:48555466-48555546 2.04e-03 60_[+4(9.57e-05)]_12 chr22:38712975-38713055 2.61e-01 80 chr19:42787810-42787890 3.05e-03 80 chr6:43244179-43244259 2.32e-02 80 chr5:6583207-6583287 2.99e-01 80 chr9:139964934-139965014 4.13e-02 80 chr5:149110713-149110793 9.12e-02 80 chr17:29815080-29815160 4.16e-01 80 chr16:230753-230833 8.09e-01 80 chr9:139781234-139781314 8.91e-01 80 chr17:2295949-2296029 2.96e-01 80 chr7:158349652-158349732 9.96e-01 80 chr1:94312242-94312322 6.43e-02 9_[+1(4.34e-05)]_63 chr11:126152887-12615296 8.87e-01 80 chr7:100494832-100494912 6.47e-01 80 chr1:7765133-7765213 1.39e-02 80 chr8:145734791-145734871 6.73e-02 80 chr16:432253-432333 9.75e-01 80 chr16:84001766-84001846 5.78e-01 80 chr19:10401953-10402033 6.52e-02 80 chr3:71631834-71631914 1.53e-01 80 chr3:126702279-126702359 1.00e-01 80 chrX:152201217-152201297 9.67e-02 80 chr9:14322722-14322802 3.45e-01 80 chr1:1136933-1137013 8.89e-02 80 chr3:52273329-52273409 2.15e-03 42_[+4(7.60e-06)]_30 chr11:6291369-6291449 6.22e-04 29_[+1(5.84e-05)]_27_[+4(1.46e-05)]_\ 8 chr5:142783207-142783287 5.38e-02 55_[+3(1.29e-05)]_17 chr1:21978202-21978282 3.90e-02 11_[+1(4.34e-05)]_61 chr14:37667129-37667209 4.86e-01 80 chr2:65216292-65216372 8.86e-01 80 chr6:170240380-170240460 8.21e-01 80 chr9:139240453-139240533 1.66e-02 80 chr17:79917735-79917815 2.47e-03 52_[+5(2.40e-06)]_20 chr9:130661299-130661379 2.18e-01 80 chr22:46423309-46423389 8.08e-01 80 chr12:113495175-11349525 3.39e-01 80 chr5:74532793-74532873 3.46e-02 80 chr17:45918290-45918370 2.40e-01 80 chr16:2867839-2867919 4.40e-01 80 chr19:1266981-1267061 1.91e-01 80 chr19:1524419-1524499 1.18e-01 24_[+4(3.91e-05)]_48 chr20:31331315-31331395 9.64e-01 80 chr22:46972552-46972632 2.99e-01 80 chr12:102091961-10209204 3.39e-01 80 chr9:4984922-4985002 5.89e-01 80 chr19:34288073-34288153 4.70e-01 80 chr18:72163898-72163978 4.29e-01 80 chr6:2971743-2971823 3.40e-01 80 chr8:11422128-11422208 8.39e-02 80 chr9:138371071-138371151 6.44e-01 80 chr21:35987035-35987115 5.44e-02 80 chr7:101929755-101929835 8.97e-01 80 chr4:15004590-15004670 1.38e-01 52_[+3(6.05e-05)]_20 chr15:51200436-51200516 2.99e-01 80 chr2:242674271-242674351 5.36e-01 80 chr11:6440583-6440663 8.10e-01 80 chr16:451001-451081 4.98e-03 20_[+4(2.40e-06)]_52 chr17:37558116-37558196 4.06e-03 41_[+5(2.40e-06)]_31 chr7:1397511-1397591 3.03e-03 47_[+3(2.59e-06)]_25 chr14:101121281-10112136 4.69e-01 80 chr9:123963492-123963572 2.78e-03 19_[+1(4.34e-05)]_53 chr16:1833263-1833343 6.29e-04 25_[+2(1.19e-06)]_47 chr8:41347827-41347907 1.38e-01 80 chr13:114145152-11414523 9.73e-01 80 chr7:100493180-100493260 4.39e-02 65_[+4(8.07e-05)]_7 chr8:145752602-145752682 6.58e-01 80 chr11:575590-575670 6.24e-01 80 chr6:164758293-164758373 3.68e-03 80 chr15:74907180-74907260 2.61e-02 80 chr20:39765855-39765935 6.78e-02 80 chr4:37979459-37979539 1.71e-01 80 chr19:10398446-10398526 9.67e-02 80 chr4:38665491-38665571 1.12e-02 71_[+4(7.60e-06)]_1 chr4:1581405-1581485 1.33e-01 43_[+1(4.34e-05)]_29 chr2:173940493-173940573 9.99e-03 68_[+4(4.43e-05)]_4 chr9:139606556-139606636 7.27e-01 80 chr7:92465018-92465098 1.35e-01 80 chr12:12877920-12878000 1.22e-01 49_[+1(4.34e-05)]_23 chr10:25463469-25463549 2.36e-01 80 chr22:39152130-39152210 1.78e-01 80 chr4:1408957-1409037 2.84e-03 42_[+4(3.91e-05)]_30 chr6:107436459-107436539 9.54e-05 2_[+2(2.55e-05)]_[+4(2.34e-05)]_62 chr19:17581388-17581468 2.33e-01 80 chr4:48485833-48485913 3.16e-02 63_[+4(1.28e-05)]_9 chr2:219265367-219265447 4.73e-04 12_[+3(2.20e-06)]_6_[+1(4.34e-05)]_\ 46 chr16:84964437-84964517 5.25e-01 80 chr19:17006716-17006796 1.51e-03 [+3(3.56e-05)]_[+3(3.56e-05)]_64 chr3:9932655-9932735 7.25e-02 80 chr4:129731033-129731113 4.81e-02 80 chr19:18899426-18899506 3.33e-01 80 chr5:175843167-175843247 4.15e-01 80 chr16:5083604-5083684 1.64e-01 80 chr2:242296046-242296126 1.74e-01 80 chr15:102029278-10202935 6.42e-01 80 chr6:107435561-107435641 7.60e-01 80 chr16:1970170-1970250 9.99e-01 80 chr17:74236663-74236743 2.70e-01 80 chr7:44122551-44122631 1.02e-01 80 chr11:288924-289004 7.10e-01 80 chr4:177241714-177241794 6.29e-01 80 chr15:89149088-89149168 7.98e-01 80 chr16:66639052-66639132 5.01e-01 80 chr21:44496527-44496607 3.35e-01 80 chr22:51170722-51170802 3.01e-01 80 chr2:845826-845906 4.68e-05 47_[+1(5.84e-05)]_12_[+3(2.93e-05)]_\ 5 chr1:54411292-54411372 9.14e-02 80 chr19:56159766-56159846 2.57e-03 46_[+1(4.34e-05)]_26 chr2:46843159-46843239 1.09e-03 13_[+3(3.09e-05)]_59 chrX:40034987-40035067 3.30e-01 80 chr3:152880033-152880113 4.75e-01 80 chr17:48423192-48423272 4.56e-01 80 chr6:11537736-11537816 4.21e-01 80 chr4:109094405-109094485 1.63e-01 80 chr6:43739131-43739211 2.90e-01 80 chr16:89643026-89643106 4.78e-02 80 chr11:34073346-34073426 1.47e-01 80 chr7:100342955-100343035 4.98e-02 65_[+1(5.84e-05)]_7 chr9:140563843-140563923 9.14e-01 80 chr19:33668375-33668455 2.13e-01 80 chr1:6051605-6051685 7.50e-02 47_[+1(4.34e-05)]_25 chrX:153362828-153362908 8.57e-01 80 chr14:62217922-62218002 3.91e-02 80 chr20:62526396-62526476 5.77e-01 80 chr4:185746568-185746648 1.20e-01 80 chr17:17585745-17585825 2.38e-01 80 chr16:1358800-1358880 7.14e-01 80 chr7:151480199-151480279 5.07e-01 80 chr22:25801316-25801396 2.80e-02 80 chr6:110500835-110500915 3.79e-02 80 chr1:805218-805298 3.41e-01 80 chr19:17559549-17559629 6.84e-01 80 chr21:38446036-38446116 2.24e-02 17_[+2(1.02e-05)]_55 chr1:27687122-27687202 3.96e-01 80 chr4:48781678-48781758 8.11e-01 80 chr5:6714113-6714193 9.25e-01 80 chr20:5107639-5107719 1.36e-01 80 chr20:62152139-62152219 1.48e-04 69_[+4(4.95e-05)]_3 chr17:7747483-7747563 4.04e-01 80 chr5:72747297-72747377 4.06e-01 80 chr19:36390765-36390845 1.45e-01 80 chr9:140197237-140197317 3.64e-02 80 chr4:147443625-147443705 1.63e-06 45_[+2(4.43e-06)]_8_[+5(2.40e-06)]_\ 11 chr7:148958931-148959011 1.07e-01 80 chr19:50037479-50037559 6.94e-02 80 chr19:2900417-2900497 3.01e-01 80 chr2:201374856-201374936 1.00e+00 80 chr16:1728685-1728765 1.01e-02 53_[+2(6.75e-06)]_19 chr16:1202481-1202561 7.65e-02 80 chr2:189156379-189156459 5.16e-03 7_[+2(1.30e-05)]_65 chr19:4552582-4552662 3.01e-02 80 chr19:17666706-17666786 8.23e-01 80 chr12:48099399-48099479 2.46e-01 80 chr9:128170785-128170865 2.88e-02 44_[+4(3.91e-05)]_5_[+4(7.35e-05)]_\ 15 chr4:122618278-122618358 6.47e-01 80 chr22:50706314-50706394 7.86e-01 80 chr16:46865272-46865352 7.54e-01 80 chr19:1567336-1567416 3.78e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************