******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RNF2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:112979-113059 1.0000 80 chr5:179364137-179364217 1.0000 80 chr1:151964862-151964942 1.0000 80 chr9:110841-110921 1.0000 80 chr7:101397835-101397915 1.0000 80 chr6:7548212-7548292 1.0000 80 chr2:175202327-175202407 1.0000 80 chr17:46826583-46826663 1.0000 80 chr17:43661207-43661287 1.0000 80 chr17:42906534-42906614 1.0000 80 chr7:130419676-130419756 1.0000 80 chr7:101398040-101398120 1.0000 80 chr3:195445200-195445280 1.0000 80 chr7:130419875-130419955 1.0000 80 chr22:23178762-23178842 1.0000 80 chr1:25254647-25254727 1.0000 80 chr1:110473874-110473954 1.0000 80 chr1:145109488-145109568 1.0000 80 chr3:150481825-150481905 1.0000 80 chr6:30434175-30434255 1.0000 80 chr7:27251546-27251626 1.0000 80 chr12:4377321-4377401 1.0000 80 chr3:56717443-56717523 1.0000 80 chr15:69139354-69139434 1.0000 80 chr5:124082023-124082103 1.0000 80 chr9:99983956-99984036 1.0000 80 chr1:120195928-120196008 1.0000 80 chr3:32876070-32876150 1.0000 80 chr17:47755690-47755770 1.0000 80 chr4:185913148-185913228 1.0000 80 chr15:69136043-69136123 1.0000 80 chr2:175202548-175202628 1.0000 80 chr18:19747824-19747904 1.0000 80 chr16:87903287-87903367 1.0000 80 chr7:130833629-130833709 1.0000 80 chr21:44909728-44909808 1.0000 80 chrX:133682387-133682467 1.0000 80 chr17:21454505-21454585 1.0000 80 chr7:155069287-155069367 1.0000 80 chr16:21531932-21532012 1.0000 80 chr19:38943515-38943595 1.0000 80 chr11:15671741-15671821 1.0000 80 chr8:71581607-71581687 1.0000 80 chr19:46094357-46094437 1.0000 80 chr5:174945012-174945092 1.0000 80 chr6:159460838-159460918 1.0000 80 chr17:42906737-42906817 1.0000 80 chr5:176794505-176794585 1.0000 80 chr17:77776513-77776593 1.0000 80 chr16:29625201-29625281 1.0000 80 chr10:6183568-6183648 1.0000 80 chr9:37079453-37079533 1.0000 80 chr2:176997071-176997151 1.0000 80 chr3:197807780-197807860 1.0000 80 chr5:154062563-154062643 1.0000 80 chr6:151575804-151575884 1.0000 80 chr18:158209-158289 1.0000 80 chr20:34359672-34359752 1.0000 80 chr17:40897199-40897279 1.0000 80 chr19:56151578-56151658 1.0000 80 chr3:186545472-186545552 1.0000 80 chr16:82203991-82204071 1.0000 80 chr16:24611344-24611424 1.0000 80 chr7:148400617-148400697 1.0000 80 chr15:34908969-34909049 1.0000 80 chr5:8457420-8457500 1.0000 80 chr19:49631172-49631252 1.0000 80 chr6:3912279-3912359 1.0000 80 chr8:146052060-146052140 1.0000 80 chr19:47746263-47746343 1.0000 80 chr10:103986157-10398623 1.0000 80 chr7:1687900-1687980 1.0000 80 chr21:38089256-38089336 1.0000 80 chr7:100025804-100025884 1.0000 80 chr1:32816640-32816720 1.0000 80 chr20:60721305-60721385 1.0000 80 chr16:66586565-66586645 1.0000 80 chr9:95571445-95571525 1.0000 80 chr19:9186410-9186490 1.0000 80 chr6:42472513-42472593 1.0000 80 chr11:34289145-34289225 1.0000 80 chr1:52035601-52035681 1.0000 80 chr5:43416523-43416603 1.0000 80 chr10:124714013-12471409 1.0000 80 chr3:195445399-195445479 1.0000 80 chr7:142985084-142985164 1.0000 80 chr7:155414247-155414327 1.0000 80 chr8:30770567-30770647 1.0000 80 chr1:38999684-38999764 1.0000 80 chr11:67250769-67250849 1.0000 80 chr5:37672427-37672507 1.0000 80 chr20:34189473-34189553 1.0000 80 chr8:126676818-126676898 1.0000 80 chr1:153377293-153377373 1.0000 80 chr22:22948983-22949063 1.0000 80 chr2:219433217-219433297 1.0000 80 chr10:49514357-49514437 1.0000 80 chr3:148804499-148804579 1.0000 80 chr15:83316000-83316080 1.0000 80 chr5:134370283-134370363 1.0000 80 chr1:182573695-182573775 1.0000 80 chr20:247444-247524 1.0000 80 chr1:6489873-6489953 1.0000 80 chr6:13874140-13874220 1.0000 80 chr8:97657178-97657258 1.0000 80 chr7:133768838-133768918 1.0000 80 chr2:65233789-65233869 1.0000 80 chr5:32444905-32444985 1.0000 80 chr1:67420691-67420771 1.0000 80 chr2:202652358-202652438 1.0000 80 chr11:64258534-64258614 1.0000 80 chr7:101398244-101398324 1.0000 80 chr5:70681203-70681283 1.0000 80 chr3:127347685-127347765 1.0000 80 chr3:32634788-32634868 1.0000 80 chr19:18700369-18700449 1.0000 80 chr1:247241893-247241973 1.0000 80 chr4:129566590-129566670 1.0000 80 chr9:37840740-37840820 1.0000 80 chr17:58042317-58042397 1.0000 80 chr6:28655554-28655634 1.0000 80 chr19:50837219-50837299 1.0000 80 chr1:93250941-93251021 1.0000 80 chr6:10348096-10348176 1.0000 80 chr2:11605957-11606037 1.0000 80 chr1:23437362-23437442 1.0000 80 chr19:13029942-13030022 1.0000 80 chr16:8238000-8238080 1.0000 80 chr22:41107709-41107789 1.0000 80 chr1:225562873-225562953 1.0000 80 chr6:45262241-45262321 1.0000 80 chr5:179499247-179499327 1.0000 80 chr5:127374509-127374589 1.0000 80 chr8:66629738-66629818 1.0000 80 chr17:42015582-42015662 1.0000 80 chr9:125164844-125164924 1.0000 80 chr4:39368025-39368105 1.0000 80 chr10:80218907-80218987 1.0000 80 chr13:100648136-10064821 1.0000 80 chr7:23636837-23636917 1.0000 80 chr2:176961491-176961571 1.0000 80 chr22:21392299-21392379 1.0000 80 chr6:11144056-11144136 1.0000 80 chrX:69653748-69653828 1.0000 80 chr7:72722890-72722970 1.0000 80 chr6:160225619-160225699 1.0000 80 chr16:28891460-28891540 1.0000 80 chr17:62919212-62919292 1.0000 80 chr5:112378694-112378774 1.0000 80 chr1:142816373-142816453 1.0000 80 chr11:59570303-59570383 1.0000 80 chrX:129402980-129403060 1.0000 80 chr7:2393625-2393705 1.0000 80 chr1:120809559-120809639 1.0000 80 chr1:35602519-35602599 1.0000 80 chr19:14016820-14016900 1.0000 80 chr1:205290559-205290639 1.0000 80 chr1:8122122-8122202 1.0000 80 chr1:182758597-182758677 1.0000 80 chr15:41523068-41523148 1.0000 80 chr17:61538284-61538364 1.0000 80 chr1:45501468-45501548 1.0000 80 chr11:36171417-36171497 1.0000 80 chr3:43812277-43812357 1.0000 80 chr5:153121757-153121837 1.0000 80 chr5:34924190-34924270 1.0000 80 chr6:4647964-4648044 1.0000 80 chr11:9025396-9025476 1.0000 80 chr20:57199059-57199139 1.0000 80 chr12:111284896-11128497 1.0000 80 chr8:30585601-30585681 1.0000 80 chr3:183128224-183128304 1.0000 80 chr1:57693107-57693187 1.0000 80 chr7:88319280-88319360 1.0000 80 chr16:24610244-24610324 1.0000 80 chr2:239147737-239147817 1.0000 80 chr7:151217333-151217413 1.0000 80 chr19:55987572-55987652 1.0000 80 chr9:125209212-125209292 1.0000 80 chr6:28514932-28515012 1.0000 80 chr11:58507324-58507404 1.0000 80 chr16:231435-231515 1.0000 80 chr17:47269380-47269460 1.0000 80 chr5:176421991-176422071 1.0000 80 chr10:12307935-12308015 1.0000 80 chr2:101476507-101476587 1.0000 80 chr7:92515494-92515574 1.0000 80 chr1:154909031-154909111 1.0000 80 chr7:22162902-22162982 1.0000 80 chr6:27741787-27741867 1.0000 80 chr5:180479708-180479788 1.0000 80 chr18:20248078-20248158 1.0000 80 chr22:21910434-21910514 1.0000 80 chr17:66470790-66470870 1.0000 80 chr2:153428926-153429006 1.0000 80 chr12:104802486-10480256 1.0000 80 chr5:96519559-96519639 1.0000 80 chr1:26564195-26564275 1.0000 80 chr8:61566428-61566508 1.0000 80 chr2:114261822-114261902 1.0000 80 chr4:48128829-48128909 1.0000 80 chr4:8338343-8338423 1.0000 80 chr19:6425628-6425708 1.0000 80 chr19:21641015-21641095 1.0000 80 chr22:21448061-21448141 1.0000 80 chr20:61493497-61493577 1.0000 80 chr1:37980628-37980708 1.0000 80 chr8:98788676-98788756 1.0000 80 chr9:130461542-130461622 1.0000 80 chr1:153031928-153032008 1.0000 80 chr1:110955894-110955974 1.0000 80 chr6:89738563-89738643 1.0000 80 chr3:47388911-47388991 1.0000 80 chr17:45929760-45929840 1.0000 80 chr16:8192724-8192804 1.0000 80 chr8:144951155-144951235 1.0000 80 chr1:203296849-203296929 1.0000 80 chr11:94842359-94842439 1.0000 80 chr1:28051997-28052077 1.0000 80 chr9:108409930-108410010 1.0000 80 chr8:142036952-142037032 1.0000 80 chr1:92446363-92446443 1.0000 80 chr19:50393346-50393426 1.0000 80 chr19:4247681-4247761 1.0000 80 chr14:34513196-34513276 1.0000 80 chr6:114292649-114292729 1.0000 80 chr3:195443205-195443285 1.0000 80 chr1:39583045-39583125 1.0000 80 chr3:38191315-38191395 1.0000 80 chr6:40683624-40683704 1.0000 80 chr17:41074550-41074630 1.0000 80 chr6:35993442-35993522 1.0000 80 chr11:58912276-58912356 1.0000 80 chr16:3200348-3200428 1.0000 80 chr1:41405233-41405313 1.0000 80 chr8:74284047-74284127 1.0000 80 chr11:107436882-10743696 1.0000 80 chr2:38591478-38591558 1.0000 80 chr3:45709724-45709804 1.0000 80 chr11:93394601-93394681 1.0000 80 chr6:139818556-139818636 1.0000 80 chr1:179941155-179941235 1.0000 80 chr12:125389398-12538947 1.0000 80 chr1:36023575-36023655 1.0000 80 chr3:196758434-196758514 1.0000 80 chr15:75248658-75248738 1.0000 80 chr17:21220096-21220176 1.0000 80 chr2:170870534-170870614 1.0000 80 chr20:33301344-33301424 1.0000 80 chr9:37120064-37120144 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RNF2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RNF2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.231 C 0.269 G 0.268 T 0.232 Background letter frequencies (from file dataset with add-one prior applied): A 0.231 C 0.269 G 0.268 T 0.232 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGATAAG MEME-1 width = 8 sites = 38 llr = 332 E-value = 3.2e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGATAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:a3aa2 pos.-specific C 1::::::: probability G 5:a::::7 matrix T 1:::7::1 bits 2.1 * * ** 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 ****** Entropy 1.1 ****** (12.6 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GAGATAAG consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:33301344-33301424 28 1.27e-05 AGGAAGAGGG GAGATAAG CTTACTGGGA chr1:179941155-179941235 43 1.27e-05 CTGGATGACT GAGATAAG GAATACCTCG chr8:142036952-142037032 18 1.27e-05 ggccatggga gagataag gttatgagta chr22:21448061-21448141 33 1.27e-05 tcttgcagtt gagataag aggaaggcct chr12:104802486-10480256 49 1.27e-05 CTCGGGGtta gagataag gaagctaggc chr1:35602519-35602599 53 1.27e-05 ttggggcaaa gagataag aggttggggc chr22:41107709-41107789 24 1.27e-05 tatctaaacc gagataag ctgcagtgca chr6:28655554-28655634 59 1.27e-05 ctttgcagtt gagataag aggaaggcat chr4:129566590-129566670 40 1.27e-05 ctgggacaca gagataag aggtcggggc chr20:247444-247524 39 1.27e-05 gaccgggcgg gagataag cttggctggc chr5:37672427-37672507 38 1.27e-05 tcttgtggtt gagataag aggaaggcct chr6:28514932-28515012 25 2.37e-05 tctgcacagc aagataag taatcagcag chr5:153121757-153121837 41 2.37e-05 atggggaagC AAGATAAG AAGAAGGTAG chr1:45501468-45501548 35 2.37e-05 CTCCTGGAGG AAGATAAG CCAGCCAGTT chr5:127374509-127374589 23 2.37e-05 CTGTGGTCCC AAGATAAG GATTGAAAGC chr5:43416523-43416603 52 2.37e-05 GTGTGCTCTG AAGATAAG AGTCAGGAgg chr2:38591478-38591558 45 3.46e-05 CTGTGTTGCA GAGATAAA CTCAAAGTGA chr11:107436882-10743696 11 3.46e-05 tctgctcact gagataaa tgcatatctg chr5:112378694-112378774 67 3.46e-05 CTTGCAGGAG GAGATAAA GAACTG chr7:130419676-130419756 28 3.46e-05 GTCTAGCGGC GAGATAAA CACATTAAAA chr5:34924190-34924270 56 4.73e-05 ACTCATTCAG GAGAAAAG AGGAGGTGAC chr17:61538284-61538364 15 4.73e-05 TAGGCAATAG GAGAAAAG ACAGATATGA chr1:57693107-57693187 26 5.83e-05 gctgggtaaa tagataag gagcaacaga chr8:66629738-66629818 48 5.83e-05 GAGTCATTAG TAGATAAG CTCGGACTGA chr7:1687900-1687980 36 6.93e-05 GTTAGCATGG GAGATAAT GGGACGTGAA chr11:58507324-58507404 61 9.15e-05 tgtttttgtg cagataag ggaacccaca chr7:88319280-88319360 28 9.15e-05 ctgaaaagca aagataaa gcagaatcac chr16:8238000-8238080 27 1.02e-04 ggaaggaagg aagaaaag aaagagggaa chr7:100025804-100025884 71 1.02e-04 TCCCGCCACC AAGAAAAG GC chr11:15671741-15671821 44 1.13e-04 ACCCAGCCTG GAGAAAAA CGTGGCTGGG chr6:11144056-11144136 3 1.43e-04 GG TAGAAAAG CTTCGACATG chr3:38191315-38191395 29 1.54e-04 CCAGAGTGTG GAGAAAAT TAGTTTAGTG chr1:39583045-39583125 34 1.65e-04 GGACTCTTAT CAGATAAA CTTGCCATGA chr2:202652358-202652438 13 1.97e-04 taagagccag tagataat gatctggtaa chr7:155069287-155069367 9 1.97e-04 GTTTTACT TAGATAAT TCTTCAAAGA chr7:27251546-27251626 32 1.97e-04 TAGGGGTTTG CAGAAAAG GCCCACAAAT chr6:160225619-160225699 4 2.17e-04 GAG AAGAAAAT TAGACACGAT chr3:32634788-32634868 34 2.38e-04 CTATTGTGTT CAGAAAAA GAAAGTTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:33301344-33301424 1.3e-05 27_[+1]_45 chr1:179941155-179941235 1.3e-05 42_[+1]_30 chr8:142036952-142037032 1.3e-05 17_[+1]_55 chr22:21448061-21448141 1.3e-05 32_[+1]_40 chr12:104802486-10480256 1.3e-05 48_[+1]_24 chr1:35602519-35602599 1.3e-05 52_[+1]_20 chr22:41107709-41107789 1.3e-05 23_[+1]_49 chr6:28655554-28655634 1.3e-05 58_[+1]_14 chr4:129566590-129566670 1.3e-05 39_[+1]_33 chr20:247444-247524 1.3e-05 38_[+1]_34 chr5:37672427-37672507 1.3e-05 37_[+1]_35 chr6:28514932-28515012 2.4e-05 24_[+1]_48 chr5:153121757-153121837 2.4e-05 40_[+1]_32 chr1:45501468-45501548 2.4e-05 34_[+1]_38 chr5:127374509-127374589 2.4e-05 22_[+1]_50 chr5:43416523-43416603 2.4e-05 51_[+1]_21 chr2:38591478-38591558 3.5e-05 44_[+1]_28 chr11:107436882-10743696 3.5e-05 10_[+1]_62 chr5:112378694-112378774 3.5e-05 66_[+1]_6 chr7:130419676-130419756 3.5e-05 27_[+1]_45 chr5:34924190-34924270 4.7e-05 55_[+1]_17 chr17:61538284-61538364 4.7e-05 14_[+1]_58 chr1:57693107-57693187 5.8e-05 25_[+1]_47 chr8:66629738-66629818 5.8e-05 47_[+1]_25 chr7:1687900-1687980 6.9e-05 35_[+1]_37 chr11:58507324-58507404 9.2e-05 60_[+1]_12 chr7:88319280-88319360 9.2e-05 27_[+1]_45 chr16:8238000-8238080 0.0001 26_[+1]_46 chr7:100025804-100025884 0.0001 70_[+1]_2 chr11:15671741-15671821 0.00011 43_[+1]_29 chr6:11144056-11144136 0.00014 2_[+1]_70 chr3:38191315-38191395 0.00015 28_[+1]_44 chr1:39583045-39583125 0.00017 33_[+1]_39 chr2:202652358-202652438 0.0002 12_[+1]_60 chr7:155069287-155069367 0.0002 8_[+1]_64 chr7:27251546-27251626 0.0002 31_[+1]_41 chr6:160225619-160225699 0.00022 3_[+1]_69 chr3:32634788-32634868 0.00024 33_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGATAAG width=8 seqs=38 chr20:33301344-33301424 ( 28) GAGATAAG 1 chr1:179941155-179941235 ( 43) GAGATAAG 1 chr8:142036952-142037032 ( 18) GAGATAAG 1 chr22:21448061-21448141 ( 33) GAGATAAG 1 chr12:104802486-10480256 ( 49) GAGATAAG 1 chr1:35602519-35602599 ( 53) GAGATAAG 1 chr22:41107709-41107789 ( 24) GAGATAAG 1 chr6:28655554-28655634 ( 59) GAGATAAG 1 chr4:129566590-129566670 ( 40) GAGATAAG 1 chr20:247444-247524 ( 39) GAGATAAG 1 chr5:37672427-37672507 ( 38) GAGATAAG 1 chr6:28514932-28515012 ( 25) AAGATAAG 1 chr5:153121757-153121837 ( 41) AAGATAAG 1 chr1:45501468-45501548 ( 35) AAGATAAG 1 chr5:127374509-127374589 ( 23) AAGATAAG 1 chr5:43416523-43416603 ( 52) AAGATAAG 1 chr2:38591478-38591558 ( 45) GAGATAAA 1 chr11:107436882-10743696 ( 11) GAGATAAA 1 chr5:112378694-112378774 ( 67) GAGATAAA 1 chr7:130419676-130419756 ( 28) GAGATAAA 1 chr5:34924190-34924270 ( 56) GAGAAAAG 1 chr17:61538284-61538364 ( 15) GAGAAAAG 1 chr1:57693107-57693187 ( 26) TAGATAAG 1 chr8:66629738-66629818 ( 48) TAGATAAG 1 chr7:1687900-1687980 ( 36) GAGATAAT 1 chr11:58507324-58507404 ( 61) CAGATAAG 1 chr7:88319280-88319360 ( 28) AAGATAAA 1 chr16:8238000-8238080 ( 27) AAGAAAAG 1 chr7:100025804-100025884 ( 71) AAGAAAAG 1 chr11:15671741-15671821 ( 44) GAGAAAAA 1 chr6:11144056-11144136 ( 3) TAGAAAAG 1 chr3:38191315-38191395 ( 29) GAGAAAAT 1 chr1:39583045-39583125 ( 34) CAGATAAA 1 chr2:202652358-202652438 ( 13) TAGATAAT 1 chr7:155069287-155069367 ( 9) TAGATAAT 1 chr7:27251546-27251626 ( 32) CAGAAAAG 1 chr6:160225619-160225699 ( 4) AAGAAAAT 1 chr3:32634788-32634868 ( 34) CAGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 3.2e-012 3 -135 97 -82 211 -1189 -1189 -1189 -1189 -1189 190 -1189 211 -1189 -1189 -1189 19 -1189 -1189 167 211 -1189 -1189 -1189 211 -1189 -1189 -1189 -14 -1189 130 -82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 3.2e-012 0.236842 0.105263 0.526316 0.131579 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.263158 0.000000 0.000000 0.736842 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.210526 0.000000 0.657895 0.131579 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-1 regular expression -------------------------------------------------------------------------------- [GA]AGA[TA]AA[GA] -------------------------------------------------------------------------------- Time 5.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TGASTCAY MEME-2 width = 8 sites = 37 llr = 331 E-value = 9.6e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :::6:9:4 probability G :a:4:1:1 matrix T a::1a::5 bits 2.1 * * * 1.9 *** * * 1.7 *** * * 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.9 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACTCAT consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:33301344-33301424 67 1.29e-05 CAATGGGGTC TGACTCAT AAATGA chr4:8338343-8338423 23 1.29e-05 acaaccttct tgactcat cccactgact chr18:20248078-20248158 20 1.29e-05 AGTCATGCAG TGACTCAT AGCATCATCA chr5:34924190-34924270 44 1.29e-05 AGTCACACAG TGACTCAT TCAGGAGAAA chr11:36171417-36171497 29 1.29e-05 TCATGACTCA TGACTCAT GAATGTGGCT chr2:11605957-11606037 41 1.29e-05 CGGCCGCTGC TGACTCAT GCTGCCCGGC chr6:10348096-10348176 57 1.29e-05 AATCTCTCTG TGACTCAT TCGATGAGGA chr7:133768838-133768918 57 1.29e-05 CCTGGAAACA TGACTCAT CCAAGGGTGT chr5:174945012-174945092 9 1.29e-05 ATTCAGCA TGACTCAT CCATCCCCCT chr20:57199059-57199139 16 2.79e-05 GCAGAGCCGC TGACTCAC GCAGTGTCTG chr9:125164844-125164924 36 2.79e-05 TTCTAATCTA TGACTCAC ACTCTGCATC chr1:23437362-23437442 61 2.79e-05 ccaggcacgg tgactcac gcctgtaatc chr9:37840740-37840820 30 2.79e-05 cctcactcac tgactcac ccagagcaac chr2:65233789-65233869 14 2.79e-05 ccaggcatgg tgactcac gcttgtaatc chr8:126676818-126676898 70 2.79e-05 TCTAGCTGCA TGACTCAC CCG chr19:9186410-9186490 27 2.79e-05 CCACTGCCCA TGACTCAC TCGGCCCCCC chr1:26564195-26564275 18 4.08e-05 gtggaattgc tgagtcat agggtaactc chr3:43812277-43812357 63 4.08e-05 AGGCGAGTGG TGAGTCAT CACACTGGGG chr8:66629738-66629818 37 4.08e-05 ACTTGCAAGG TGAGTCAT TAGTAGATAA chr5:127374509-127374589 54 4.08e-05 AGGAAACAAG TGAGTCAT TACAACTATT chr1:52035601-52035681 13 4.08e-05 atcaggaggc tgagtcat aaggaggtga chr1:39583045-39583125 49 5.57e-05 AAACTTGCCA TGAGTCAC ACTGGGGAGT chr1:153031928-153032008 9 5.57e-05 ACACAGTC TGAGTCAC ACCCTGCGAC chr12:104802486-10480256 30 5.57e-05 GCTGGAATAG TGAGTCAC CCTCGGGGtt chr22:21910434-21910514 40 5.57e-05 gagccatgag tgagtcac cgcactcctg chr1:67420691-67420771 23 5.57e-05 TTTTACAAAG TGAGTCAC ACTTCTTATC chr6:3912279-3912359 37 5.57e-05 CAGGCACTAG TGAGTCAC TTTTTGAGGC chr3:183128224-183128304 3 7.06e-05 GG TGACTCAG CCAGTGTTAA chr1:6489873-6489953 37 7.06e-05 GCGCTGGTGC TGACTCAG TGGCCAGATG chr3:45709724-45709804 11 8.18e-05 GGGAAGTGGC TGATTCAT CTTACCAGTC chr17:77776513-77776593 17 8.18e-05 GAGGCAGTTT TGATTCAT TCCTTGGGCA chr20:60721305-60721385 28 1.10e-04 GTTTGGCATG TGACTGAT TATTCTTTGC chr15:34908969-34909049 43 1.10e-04 GCAGTGTAAA TGAGTCAG ACCCATGCGC chr19:14016820-14016900 5 1.37e-04 TCGG TGACTGAC AGACGCTCTG chr2:202652358-202652438 61 1.61e-04 agggtttatc tgagtgat acaggcaacc chr15:69139354-69139434 65 1.61e-04 catgattatt tgaatcat gcagatta chr20:247444-247524 9 2.34e-04 aaagctga tgacccac cggccctgca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:33301344-33301424 1.3e-05 66_[+2]_6 chr4:8338343-8338423 1.3e-05 22_[+2]_50 chr18:20248078-20248158 1.3e-05 19_[+2]_53 chr5:34924190-34924270 1.3e-05 43_[+2]_29 chr11:36171417-36171497 1.3e-05 28_[+2]_44 chr2:11605957-11606037 1.3e-05 40_[+2]_32 chr6:10348096-10348176 1.3e-05 56_[+2]_16 chr7:133768838-133768918 1.3e-05 56_[+2]_16 chr5:174945012-174945092 1.3e-05 8_[+2]_64 chr20:57199059-57199139 2.8e-05 15_[+2]_57 chr9:125164844-125164924 2.8e-05 35_[+2]_37 chr1:23437362-23437442 2.8e-05 60_[+2]_12 chr9:37840740-37840820 2.8e-05 29_[+2]_43 chr2:65233789-65233869 2.8e-05 13_[+2]_59 chr8:126676818-126676898 2.8e-05 69_[+2]_3 chr19:9186410-9186490 2.8e-05 26_[+2]_46 chr1:26564195-26564275 4.1e-05 17_[+2]_55 chr3:43812277-43812357 4.1e-05 62_[+2]_10 chr8:66629738-66629818 4.1e-05 36_[+2]_36 chr5:127374509-127374589 4.1e-05 53_[+2]_19 chr1:52035601-52035681 4.1e-05 12_[+2]_60 chr1:39583045-39583125 5.6e-05 48_[+2]_24 chr1:153031928-153032008 5.6e-05 8_[+2]_64 chr12:104802486-10480256 5.6e-05 29_[+2]_43 chr22:21910434-21910514 5.6e-05 39_[+2]_33 chr1:67420691-67420771 5.6e-05 22_[+2]_50 chr6:3912279-3912359 5.6e-05 36_[+2]_36 chr3:183128224-183128304 7.1e-05 2_[+2]_70 chr1:6489873-6489953 7.1e-05 36_[+2]_36 chr3:45709724-45709804 8.2e-05 10_[+2]_62 chr17:77776513-77776593 8.2e-05 16_[+2]_56 chr20:60721305-60721385 0.00011 27_[+2]_45 chr15:34908969-34909049 0.00011 42_[+2]_30 chr19:14016820-14016900 0.00014 4_[+2]_68 chr2:202652358-202652438 0.00016 60_[+2]_12 chr15:69139354-69139434 0.00016 64_[+2]_8 chr20:247444-247524 0.00023 8_[+2]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAY width=8 seqs=37 chr20:33301344-33301424 ( 67) TGACTCAT 1 chr4:8338343-8338423 ( 23) TGACTCAT 1 chr18:20248078-20248158 ( 20) TGACTCAT 1 chr5:34924190-34924270 ( 44) TGACTCAT 1 chr11:36171417-36171497 ( 29) TGACTCAT 1 chr2:11605957-11606037 ( 41) TGACTCAT 1 chr6:10348096-10348176 ( 57) TGACTCAT 1 chr7:133768838-133768918 ( 57) TGACTCAT 1 chr5:174945012-174945092 ( 9) TGACTCAT 1 chr20:57199059-57199139 ( 16) TGACTCAC 1 chr9:125164844-125164924 ( 36) TGACTCAC 1 chr1:23437362-23437442 ( 61) TGACTCAC 1 chr9:37840740-37840820 ( 30) TGACTCAC 1 chr2:65233789-65233869 ( 14) TGACTCAC 1 chr8:126676818-126676898 ( 70) TGACTCAC 1 chr19:9186410-9186490 ( 27) TGACTCAC 1 chr1:26564195-26564275 ( 18) TGAGTCAT 1 chr3:43812277-43812357 ( 63) TGAGTCAT 1 chr8:66629738-66629818 ( 37) TGAGTCAT 1 chr5:127374509-127374589 ( 54) TGAGTCAT 1 chr1:52035601-52035681 ( 13) TGAGTCAT 1 chr1:39583045-39583125 ( 49) TGAGTCAC 1 chr1:153031928-153032008 ( 9) TGAGTCAC 1 chr12:104802486-10480256 ( 30) TGAGTCAC 1 chr22:21910434-21910514 ( 40) TGAGTCAC 1 chr1:67420691-67420771 ( 23) TGAGTCAC 1 chr6:3912279-3912359 ( 37) TGAGTCAC 1 chr3:183128224-183128304 ( 3) TGACTCAG 1 chr1:6489873-6489953 ( 37) TGACTCAG 1 chr3:45709724-45709804 ( 11) TGATTCAT 1 chr17:77776513-77776593 ( 17) TGATTCAT 1 chr20:60721305-60721385 ( 28) TGACTGAT 1 chr15:34908969-34909049 ( 43) TGAGTCAG 1 chr19:14016820-14016900 ( 5) TGACTGAC 1 chr2:202652358-202652438 ( 61) TGAGTGAT 1 chr15:69139354-69139434 ( 65) TGAATCAT 1 chr20:247444-247524 ( 9) TGACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3679 E= 9.6e-014 -1185 -1185 -1185 211 -1185 -1185 190 -1185 211 -1185 -1185 -1185 -309 108 39 -210 -1185 -331 -1185 207 -1185 177 -172 -1185 211 -1185 -1185 -1185 -1185 59 -172 115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 9.6e-014 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.027027 0.567568 0.351351 0.054054 0.000000 0.027027 0.000000 0.972973 0.000000 0.918919 0.081081 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.405405 0.081081 0.513514 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-2 regular expression -------------------------------------------------------------------------------- TGA[CG]TCA[TC] -------------------------------------------------------------------------------- Time 9.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTSTTTY MEME-3 width = 8 sites = 31 llr = 256 E-value = 4.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTSTTTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:1:::: pos.-specific C 1:13::23 probability G :::6:::1 matrix T 999:aa86 bits 2.1 ** 1.9 ** 1.7 ** ** 1.5 *** ** Relative 1.3 *** *** Entropy 1.1 *** *** (11.9 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTSTTTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:179941155-179941235 61 9.70e-06 GAATACCTCG TTTGTTTT TTGTGCgata chr19:4247681-4247761 15 9.70e-06 gtgtgtgtgt TTTGTTTt ttttactggg chr7:148400617-148400697 14 9.70e-06 ttttttgttt tttgtttt ttttgagaca chr22:23178762-23178842 45 9.70e-06 tagattgtct tttgtttt gctcttaact chr17:46826583-46826663 29 9.70e-06 gttctcgtaa tttgtTTT TATCGTATTT chr3:45709724-45709804 39 1.94e-05 TGGGTTTAAC TTTCTTTT CTTTTTCTTC chr11:64258534-64258614 14 1.94e-05 ctcttcttgg tttctttt gaataatttc chr7:130419875-130419955 19 1.94e-05 GCATGTACGG TTTCTTTT ACGTGTCTTC chr13:100648136-10064821 46 3.07e-05 TTTCGATTTG TTTGTTTC GCGCATTTCC chr16:24611344-24611424 1 3.07e-05 . tttgtttc aatttcattt chr17:45929760-45929840 66 4.20e-05 AATTTCCCTA TTTCTTTC ATTTTTC chr2:176961491-176961571 21 4.20e-05 CCCAGCTTGA TTTCTTTC ATATCTTACT chr22:41107709-41107789 52 4.20e-05 gtgatgacag tttctttc cacttccccg chr19:9186410-9186490 53 5.32e-05 CCTTGCGTTC TTTGTTCT TCGCCTCCTT chr21:38089256-38089336 36 5.32e-05 CATTCCAAAA TTTGTTCT GTAAAGACAT chr10:80218907-80218987 47 6.44e-05 TTGCTAAACC TTTGTTTG TACAGCAGTC chr3:148804499-148804579 63 6.44e-05 GTGCCGGTGT TTTGTTTG ATTCCCTGCC chr7:101398244-101398324 56 8.40e-05 TCGCGGTTTT TTTATTTT TCTACAAAAG chr2:176997071-176997151 45 8.40e-05 TTAACTTGCT TTCGTTTT GAACCGCCCT chr8:98788676-98788756 18 9.53e-05 ACGTGTTTCC TTTCTTCT TAAAGCCCGT chr3:43812277-43812357 6 1.20e-04 AGTAA TTTGTTCC ATTTCTTAAT chr1:39583045-39583125 8 1.74e-04 TGCGCTC CTTGTTTT GTGAAGCTGG chr1:110955894-110955974 1 1.74e-04 . cttgtttt tctgtctgtg chr8:61566428-61566508 29 1.74e-04 CCCTGCTTCT TTCGTTTC CTGCACCTCC chr7:101397835-101397915 21 1.74e-04 ACTCCTGAGA TTCGTTTC TGGCAAGGTT chr9:110841-110921 70 1.74e-04 ACATGGAAAT TTTATTTC ATA chr3:195445399-195445479 17 1.88e-04 ttcacttact tttcttcc tccctatacc chr1:92446363-92446443 15 2.07e-04 AGAAAGTAAG TATCTTTT ATTATGATAG chr8:126676818-126676898 50 2.07e-04 TTTACCCATG TTTGTTAT TTTCTAGCTG chr1:38999684-38999764 17 2.07e-04 tttcactttt tatctttT GAAGGCACAC chr6:151575804-151575884 42 3.59e-04 CGATCGGTTA TTCGTTTG ATATTCGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTSTTTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:179941155-179941235 9.7e-06 60_[+3]_12 chr19:4247681-4247761 9.7e-06 14_[+3]_58 chr7:148400617-148400697 9.7e-06 13_[+3]_59 chr22:23178762-23178842 9.7e-06 44_[+3]_28 chr17:46826583-46826663 9.7e-06 28_[+3]_44 chr3:45709724-45709804 1.9e-05 38_[+3]_34 chr11:64258534-64258614 1.9e-05 13_[+3]_59 chr7:130419875-130419955 1.9e-05 18_[+3]_54 chr13:100648136-10064821 3.1e-05 45_[+3]_27 chr16:24611344-24611424 3.1e-05 [+3]_72 chr17:45929760-45929840 4.2e-05 65_[+3]_7 chr2:176961491-176961571 4.2e-05 20_[+3]_52 chr22:41107709-41107789 4.2e-05 51_[+3]_21 chr19:9186410-9186490 5.3e-05 52_[+3]_20 chr21:38089256-38089336 5.3e-05 35_[+3]_37 chr10:80218907-80218987 6.4e-05 46_[+3]_26 chr3:148804499-148804579 6.4e-05 62_[+3]_10 chr7:101398244-101398324 8.4e-05 55_[+3]_17 chr2:176997071-176997151 8.4e-05 44_[+3]_28 chr8:98788676-98788756 9.5e-05 17_[+3]_55 chr3:43812277-43812357 0.00012 5_[+3]_67 chr1:39583045-39583125 0.00017 7_[+3]_65 chr1:110955894-110955974 0.00017 [+3]_72 chr8:61566428-61566508 0.00017 28_[+3]_44 chr7:101397835-101397915 0.00017 20_[+3]_52 chr9:110841-110921 0.00017 69_[+3]_3 chr3:195445399-195445479 0.00019 16_[+3]_56 chr1:92446363-92446443 0.00021 14_[+3]_58 chr8:126676818-126676898 0.00021 49_[+3]_23 chr1:38999684-38999764 0.00021 16_[+3]_56 chr6:151575804-151575884 0.00036 41_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTSTTTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTSTTTY width=8 seqs=31 chr1:179941155-179941235 ( 61) TTTGTTTT 1 chr19:4247681-4247761 ( 15) TTTGTTTT 1 chr7:148400617-148400697 ( 14) TTTGTTTT 1 chr22:23178762-23178842 ( 45) TTTGTTTT 1 chr17:46826583-46826663 ( 29) TTTGTTTT 1 chr3:45709724-45709804 ( 39) TTTCTTTT 1 chr11:64258534-64258614 ( 14) TTTCTTTT 1 chr7:130419875-130419955 ( 19) TTTCTTTT 1 chr13:100648136-10064821 ( 46) TTTGTTTC 1 chr16:24611344-24611424 ( 1) TTTGTTTC 1 chr17:45929760-45929840 ( 66) TTTCTTTC 1 chr2:176961491-176961571 ( 21) TTTCTTTC 1 chr22:41107709-41107789 ( 52) TTTCTTTC 1 chr19:9186410-9186490 ( 53) TTTGTTCT 1 chr21:38089256-38089336 ( 36) TTTGTTCT 1 chr10:80218907-80218987 ( 47) TTTGTTTG 1 chr3:148804499-148804579 ( 63) TTTGTTTG 1 chr7:101398244-101398324 ( 56) TTTATTTT 1 chr2:176997071-176997151 ( 45) TTCGTTTT 1 chr8:98788676-98788756 ( 18) TTTCTTCT 1 chr3:43812277-43812357 ( 6) TTTGTTCC 1 chr1:39583045-39583125 ( 8) CTTGTTTT 1 chr1:110955894-110955974 ( 1) CTTGTTTT 1 chr8:61566428-61566508 ( 29) TTCGTTTC 1 chr7:101397835-101397915 ( 21) TTCGTTTC 1 chr9:110841-110921 ( 70) TTTATTTC 1 chr3:195445399-195445479 ( 17) TTTCTTCC 1 chr1:92446363-92446443 ( 15) TATCTTTT 1 chr8:126676818-126676898 ( 50) TTTGTTAT 1 chr1:38999684-38999764 ( 17) TATCTTTT 1 chr6:151575804-151575884 ( 42) TTCGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTSTTTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 4.0e+002 -1160 -206 -1160 201 -184 -1160 -1160 201 -1160 -106 -1160 191 -184 26 119 -1160 -1160 -1160 -1160 211 -1160 -1160 -1160 211 -284 -74 -1160 180 -1160 26 -147 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTSTTTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 4.0e+002 0.000000 0.064516 0.000000 0.935484 0.064516 0.000000 0.000000 0.935484 0.000000 0.129032 0.000000 0.870968 0.064516 0.322581 0.612903 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.032258 0.161290 0.000000 0.806452 0.000000 0.322581 0.096774 0.580645 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTSTTTY MEME-3 regular expression -------------------------------------------------------------------------------- TTT[GC]TTT[TC] -------------------------------------------------------------------------------- Time 12.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCTC MEME-4 width = 8 sites = 10 llr = 105 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C a::::a:7 probability G :::::::2 matrix T :aa:a:a1 bits 2.1 **** * 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCTC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:139818556-139818636 60 1.30e-05 cacatgaact cttatctc agggtaccat chr8:74284047-74284127 1 1.30e-05 . CTTATCTC CCATTCAGCA chr1:41405233-41405313 29 1.30e-05 ATTGCCCATG CTTATCTC CAGAGACAGT chr1:110955894-110955974 29 1.30e-05 gctagtgagc cttatctc tccctttccc chr10:12307935-12308015 7 1.30e-05 CCAGTT CTTATCTC CCTCTTGAGG chr10:80218907-80218987 18 1.30e-05 CCTCCCTCCA CTTATCTC TGTTTGAACA chr5:174945012-174945092 31 1.30e-05 CCCCCTACGC CTTATCTC TCCCCAAGTG chr9:108409930-108410010 43 2.60e-05 AGGCTGCACT CTTATCTG CTGCCCACAG chr1:67420691-67420771 35 2.60e-05 AGTCACACTT CTTATCTG TATATCCAGG chr9:125209212-125209292 33 3.72e-05 aaggaaatca cttatctt ctaacaataa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:139818556-139818636 1.3e-05 59_[+4]_13 chr8:74284047-74284127 1.3e-05 [+4]_72 chr1:41405233-41405313 1.3e-05 28_[+4]_44 chr1:110955894-110955974 1.3e-05 28_[+4]_44 chr10:12307935-12308015 1.3e-05 6_[+4]_66 chr10:80218907-80218987 1.3e-05 17_[+4]_55 chr5:174945012-174945092 1.3e-05 30_[+4]_42 chr9:108409930-108410010 2.6e-05 42_[+4]_30 chr1:67420691-67420771 2.6e-05 34_[+4]_38 chr9:125209212-125209292 3.7e-05 32_[+4]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCTC width=8 seqs=10 chr6:139818556-139818636 ( 60) CTTATCTC 1 chr8:74284047-74284127 ( 1) CTTATCTC 1 chr1:41405233-41405313 ( 29) CTTATCTC 1 chr1:110955894-110955974 ( 29) CTTATCTC 1 chr10:12307935-12308015 ( 7) CTTATCTC 1 chr10:80218907-80218987 ( 18) CTTATCTC 1 chr5:174945012-174945092 ( 31) CTTATCTC 1 chr9:108409930-108410010 ( 43) CTTATCTG 1 chr1:67420691-67420771 ( 35) CTTATCTG 1 chr9:125209212-125209292 ( 33) CTTATCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 3.4e+003 -997 189 -997 -997 -997 -997 -997 211 -997 -997 -997 211 211 -997 -997 -997 -997 -997 -997 211 -997 189 -997 -997 -997 -997 -997 211 -997 138 -42 -121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.700000 0.200000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-4 regular expression -------------------------------------------------------------------------------- CTTATCT[CG] -------------------------------------------------------------------------------- Time 16.50 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAHGAA MEME-5 width = 8 sites = 19 llr = 171 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAHGAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7aaa33aa pos.-specific C 3:::4::: probability G ::::17:: matrix T ::::3::: bits 2.1 *** ** 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 **** *** (12.9 bits) 0.8 **** *** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel AAAACGAA consensus C AA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAHGAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:130833629-130833709 9 1.10e-05 TGGTTTTT AAAACGAA TGAAGGAGTT chr12:4377321-4377401 68 1.10e-05 CAGCAATCAT AAAACGAA AAAGA chr5:179364137-179364217 45 1.10e-05 aagtatcatc aaaacgaa atatcatcaa chr6:89738563-89738643 66 2.98e-05 caacaacgaa aaaaagaa TTTAAAG chr7:88319280-88319360 61 2.98e-05 gcagctaggg aaaaagaa acactacaca chr22:22948983-22949063 70 2.98e-05 tttataccga aaaatgaa aac chr17:42906534-42906614 70 2.98e-05 CAATCGCAAA AAAAAGAA CAA chr9:112979-113059 53 2.98e-05 TTATTCAGTA AAAATGAA TGAAACGGGG chr1:8122122-8122202 44 5.20e-05 AAATTaaaac aaaacaaa ataaaaccaa chr21:44909728-44909808 41 5.20e-05 acaccaacac caaacgaa aagaaggaga chr5:124082023-124082103 53 5.20e-05 CCCCTTTTGG CAAACGAA TCAGTCCTTT chr11:107436882-10743696 61 9.02e-05 atcagaaact caaaagaa tgcaaccatt chr14:34513196-34513276 6 9.02e-05 GTGCT CAAATGAA GTGTGGCAAA chr6:28514932-28515012 46 9.02e-05 tcagcagagt aaaataaa ctaaaaagct chr16:66586565-66586645 72 9.02e-05 CGTGCAGCCG AAAATAAA A chr12:111284896-11128497 71 1.01e-04 CCTGCCAGGG AAAAGGAA AG chr11:34289145-34289225 17 1.01e-04 TGAAGGTTTG AAAAGGAA TCACCCTAGT chr8:144951155-144951235 29 1.12e-04 TCAAGTTCCC CAAACAAA GAGGAGATCC chr3:195445399-195445479 62 1.31e-04 tctgcgggac caaaaaaa tctagagaag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAHGAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:130833629-130833709 1.1e-05 8_[+5]_64 chr12:4377321-4377401 1.1e-05 67_[+5]_5 chr5:179364137-179364217 1.1e-05 44_[+5]_28 chr6:89738563-89738643 3e-05 65_[+5]_7 chr7:88319280-88319360 3e-05 60_[+5]_12 chr22:22948983-22949063 3e-05 69_[+5]_3 chr17:42906534-42906614 3e-05 69_[+5]_3 chr9:112979-113059 3e-05 52_[+5]_20 chr1:8122122-8122202 5.2e-05 43_[+5]_29 chr21:44909728-44909808 5.2e-05 40_[+5]_32 chr5:124082023-124082103 5.2e-05 52_[+5]_20 chr11:107436882-10743696 9e-05 60_[+5]_12 chr14:34513196-34513276 9e-05 5_[+5]_67 chr6:28514932-28515012 9e-05 45_[+5]_27 chr16:66586565-66586645 9e-05 71_[+5]_1 chr12:111284896-11128497 0.0001 70_[+5]_2 chr11:34289145-34289225 0.0001 16_[+5]_56 chr8:144951155-144951235 0.00011 28_[+5]_44 chr3:195445399-195445479 0.00013 61_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAHGAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAHGAA width=8 seqs=19 chr7:130833629-130833709 ( 9) AAAACGAA 1 chr12:4377321-4377401 ( 68) AAAACGAA 1 chr5:179364137-179364217 ( 45) AAAACGAA 1 chr6:89738563-89738643 ( 66) AAAAAGAA 1 chr7:88319280-88319360 ( 61) AAAAAGAA 1 chr22:22948983-22949063 ( 70) AAAATGAA 1 chr17:42906534-42906614 ( 70) AAAAAGAA 1 chr9:112979-113059 ( 53) AAAATGAA 1 chr1:8122122-8122202 ( 44) AAAACAAA 1 chr21:44909728-44909808 ( 41) CAAACGAA 1 chr5:124082023-124082103 ( 53) CAAACGAA 1 chr11:107436882-10743696 ( 61) CAAAAGAA 1 chr14:34513196-34513276 ( 6) CAAATGAA 1 chr6:28514932-28515012 ( 46) AAAATAAA 1 chr16:66586565-66586645 ( 72) AAAATAAA 1 chr12:111284896-11128497 ( 71) AAAAGGAA 1 chr11:34289145-34289225 ( 17) AAAAGGAA 1 chr8:144951155-144951235 ( 29) CAAACAAA 1 chr3:195445399-195445479 ( 62) CAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAHGAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 4.8e+003 156 23 -1089 -1089 211 -1089 -1089 -1089 211 -1089 -1089 -1089 211 -1089 -1089 -1089 19 46 -135 18 19 -1089 146 -1089 211 -1089 -1089 -1089 211 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAHGAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.8e+003 0.684211 0.315789 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.263158 0.368421 0.105263 0.263158 0.263158 0.000000 0.736842 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAHGAA MEME-5 regular expression -------------------------------------------------------------------------------- [AC]AAA[CAT][GA]AA -------------------------------------------------------------------------------- Time 20.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:112979-113059 4.95e-03 52_[+5(2.98e-05)]_20 chr5:179364137-179364217 1.31e-01 12_[+5(1.10e-05)]_8_[+5(1.10e-05)]_\ 8_[+5(1.10e-05)]_8_[+5(1.10e-05)]_12 chr1:151964862-151964942 1.78e-01 80 chr9:110841-110921 1.24e-02 80 chr7:101397835-101397915 8.81e-02 80 chr6:7548212-7548292 5.39e-01 80 chr2:175202327-175202407 9.75e-01 80 chr17:46826583-46826663 7.65e-02 28_[+3(9.70e-06)]_31_[+3(9.70e-06)]_\ 5 chr17:43661207-43661287 5.00e-03 80 chr17:42906534-42906614 4.99e-02 6_[+5(2.98e-05)]_55_[+5(2.98e-05)]_\ 3 chr7:130419676-130419756 3.52e-02 27_[+1(3.46e-05)]_45 chr7:101398040-101398120 9.04e-01 80 chr3:195445200-195445280 6.35e-01 80 chr7:130419875-130419955 1.86e-02 18_[+3(1.94e-05)]_34_[+3(1.94e-05)]_\ 12 chr22:23178762-23178842 1.85e-02 44_[+3(9.70e-06)]_28 chr1:25254647-25254727 9.59e-01 80 chr1:110473874-110473954 6.26e-01 80 chr1:145109488-145109568 1.15e-01 80 chr3:150481825-150481905 7.71e-01 80 chr6:30434175-30434255 9.95e-01 80 chr7:27251546-27251626 2.67e-01 80 chr12:4377321-4377401 2.38e-03 67_[+5(1.10e-05)]_5 chr3:56717443-56717523 1.00e+00 80 chr15:69139354-69139434 5.48e-02 80 chr5:124082023-124082103 3.88e-03 52_[+5(5.20e-05)]_20 chr9:99983956-99984036 9.96e-01 80 chr1:120195928-120196008 6.31e-02 80 chr3:32876070-32876150 3.62e-02 80 chr17:47755690-47755770 8.72e-01 80 chr4:185913148-185913228 2.75e-02 80 chr15:69136043-69136123 6.22e-01 80 chr2:175202548-175202628 9.98e-01 80 chr18:19747824-19747904 4.01e-01 80 chr16:87903287-87903367 9.75e-01 80 chr7:130833629-130833709 6.97e-04 8_[+5(1.10e-05)]_64 chr21:44909728-44909808 1.25e-01 40_[+5(5.20e-05)]_21_[+5(5.20e-05)]_\ 3 chrX:133682387-133682467 2.29e-01 80 chr17:21454505-21454585 2.43e-01 80 chr7:155069287-155069367 2.41e-02 80 chr16:21531932-21532012 9.79e-01 80 chr19:38943515-38943595 9.44e-01 80 chr11:15671741-15671821 1.95e-01 80 chr8:71581607-71581687 9.99e-01 80 chr19:46094357-46094437 9.79e-01 80 chr5:174945012-174945092 5.72e-05 8_[+2(1.29e-05)]_14_[+4(1.30e-05)]_\ 42 chr6:159460838-159460918 7.47e-02 80 chr17:42906737-42906817 3.21e-01 80 chr5:176794505-176794585 9.77e-01 80 chr17:77776513-77776593 4.06e-02 16_[+2(8.18e-05)]_56 chr16:29625201-29625281 9.79e-01 80 chr10:6183568-6183648 2.88e-01 80 chr9:37079453-37079533 1.00e+00 80 chr2:176997071-176997151 1.30e-01 44_[+3(8.40e-05)]_28 chr3:197807780-197807860 1.00e+00 80 chr5:154062563-154062643 9.67e-01 80 chr6:151575804-151575884 1.22e-01 80 chr18:158209-158289 8.90e-01 80 chr20:34359672-34359752 4.45e-01 80 chr17:40897199-40897279 1.00e+00 80 chr19:56151578-56151658 9.29e-01 80 chr3:186545472-186545552 7.90e-01 80 chr16:82203991-82204071 4.03e-01 80 chr16:24611344-24611424 4.82e-02 [+3(3.07e-05)]_37_[+3(9.53e-05)]_17_\ [+3(5.32e-05)]_2 chr7:148400617-148400697 1.03e-02 6_[+3(9.70e-06)]_66 chr15:34908969-34909049 4.19e-02 80 chr5:8457420-8457500 7.78e-01 80 chr19:49631172-49631252 1.00e+00 80 chr6:3912279-3912359 1.12e-01 36_[+2(5.57e-05)]_36 chr8:146052060-146052140 9.89e-01 80 chr19:47746263-47746343 3.63e-01 80 chr10:103986157-10398623 3.57e-01 80 chr7:1687900-1687980 9.62e-02 35_[+1(6.93e-05)]_37 chr21:38089256-38089336 3.13e-02 35_[+3(5.32e-05)]_37 chr7:100025804-100025884 1.08e-01 80 chr1:32816640-32816720 4.91e-01 80 chr20:60721305-60721385 9.63e-02 80 chr16:66586565-66586645 1.18e-01 71_[+5(9.02e-05)]_1 chr9:95571445-95571525 1.00e+00 80 chr19:9186410-9186490 7.60e-03 26_[+2(2.79e-05)]_18_[+3(5.32e-05)]_\ 20 chr6:42472513-42472593 5.95e-01 80 chr11:34289145-34289225 9.76e-03 80 chr1:52035601-52035681 1.05e-01 12_[+2(4.08e-05)]_7_[+2(5.57e-05)]_\ 45 chr5:43416523-43416603 7.14e-02 51_[+1(2.37e-05)]_21 chr10:124714013-12471409 7.75e-01 80 chr3:195445399-195445479 9.20e-04 80 chr7:142985084-142985164 2.81e-01 80 chr7:155414247-155414327 1.68e-01 80 chr8:30770567-30770647 9.27e-01 80 chr1:38999684-38999764 6.05e-02 80 chr11:67250769-67250849 1.00e+00 80 chr5:37672427-37672507 2.63e-02 37_[+1(1.27e-05)]_35 chr20:34189473-34189553 1.00e+00 80 chr8:126676818-126676898 2.75e-03 9_[+2(5.57e-05)]_52_[+2(2.79e-05)]_\ 3 chr1:153377293-153377373 6.08e-01 80 chr22:22948983-22949063 5.50e-02 69_[+5(2.98e-05)]_3 chr2:219433217-219433297 9.98e-01 80 chr10:49514357-49514437 9.80e-01 80 chr3:148804499-148804579 1.39e-01 62_[+3(6.44e-05)]_10 chr15:83316000-83316080 9.83e-01 80 chr5:134370283-134370363 2.14e-01 80 chr1:182573695-182573775 5.63e-01 80 chr20:247444-247524 9.04e-04 38_[+1(1.27e-05)]_34 chr1:6489873-6489953 3.27e-01 36_[+2(7.06e-05)]_36 chr6:13874140-13874220 8.57e-01 80 chr8:97657178-97657258 8.47e-01 80 chr7:133768838-133768918 4.54e-02 56_[+2(1.29e-05)]_16 chr2:65233789-65233869 3.49e-02 13_[+2(2.79e-05)]_14_[+2(7.06e-05)]_\ 37 chr5:32444905-32444985 1.00e+00 80 chr1:67420691-67420771 9.40e-06 22_[+2(5.57e-05)]_4_[+4(2.60e-05)]_\ 38 chr2:202652358-202652438 1.92e-04 80 chr11:64258534-64258614 1.42e-02 13_[+3(1.94e-05)]_7_[+3(8.40e-05)]_\ 44 chr7:101398244-101398324 3.92e-02 55_[+3(8.40e-05)]_17 chr5:70681203-70681283 2.01e-01 80 chr3:127347685-127347765 9.14e-01 80 chr3:32634788-32634868 2.36e-04 36_[+5(2.98e-05)]_36 chr19:18700369-18700449 1.00e+00 80 chr1:247241893-247241973 7.46e-01 80 chr4:129566590-129566670 1.01e-01 39_[+1(1.27e-05)]_33 chr9:37840740-37840820 1.16e-01 10_[+2(2.79e-05)]_11_[+2(2.79e-05)]_\ 43 chr17:58042317-58042397 9.73e-01 80 chr6:28655554-28655634 3.82e-02 58_[+1(1.27e-05)]_14 chr19:50837219-50837299 2.65e-01 80 chr1:93250941-93251021 9.68e-01 80 chr6:10348096-10348176 1.35e-03 56_[+2(1.29e-05)]_16 chr2:11605957-11606037 1.20e-01 40_[+2(1.29e-05)]_32 chr1:23437362-23437442 4.58e-03 60_[+2(2.79e-05)]_12 chr19:13029942-13030022 2.23e-01 80 chr16:8238000-8238080 4.21e-02 80 chr22:41107709-41107789 9.19e-04 23_[+1(1.27e-05)]_20_[+3(4.20e-05)]_\ 21 chr1:225562873-225562953 4.34e-02 80 chr6:45262241-45262321 1.89e-01 80 chr5:179499247-179499327 7.88e-01 80 chr5:127374509-127374589 1.33e-03 22_[+1(2.37e-05)]_23_[+2(4.08e-05)]_\ 19 chr8:66629738-66629818 4.18e-03 36_[+2(4.08e-05)]_3_[+1(5.83e-05)]_\ 25 chr17:42015582-42015662 8.02e-01 80 chr9:125164844-125164924 6.26e-03 35_[+2(2.79e-05)]_37 chr4:39368025-39368105 9.86e-01 80 chr10:80218907-80218987 2.82e-03 17_[+4(1.30e-05)]_21_[+3(6.44e-05)]_\ 26 chr13:100648136-10064821 1.28e-01 45_[+3(3.07e-05)]_27 chr7:23636837-23636917 3.56e-01 80 chr2:176961491-176961571 2.69e-02 20_[+3(4.20e-05)]_52 chr22:21392299-21392379 5.22e-01 80 chr6:11144056-11144136 1.01e-01 80 chrX:69653748-69653828 9.75e-01 80 chr7:72722890-72722970 9.15e-01 80 chr6:160225619-160225699 7.65e-02 80 chr16:28891460-28891540 9.13e-01 80 chr17:62919212-62919292 5.61e-02 80 chr5:112378694-112378774 1.14e-03 66_[+1(3.46e-05)]_6 chr1:142816373-142816453 1.77e-01 80 chr11:59570303-59570383 1.33e-01 80 chrX:129402980-129403060 7.63e-01 80 chr7:2393625-2393705 8.51e-01 80 chr1:120809559-120809639 4.02e-01 80 chr1:35602519-35602599 5.76e-02 10_[+1(1.27e-05)]_34_[+1(1.27e-05)]_\ 20 chr19:14016820-14016900 3.17e-01 80 chr1:205290559-205290639 9.91e-01 80 chr1:8122122-8122202 7.44e-03 38_[+5(5.20e-05)]_2_[+5(9.02e-05)]_\ 24 chr1:182758597-182758677 9.84e-01 80 chr15:41523068-41523148 6.08e-01 80 chr17:61538284-61538364 5.28e-03 14_[+1(4.73e-05)]_58 chr1:45501468-45501548 6.32e-03 34_[+1(2.37e-05)]_38 chr11:36171417-36171497 1.62e-02 5_[+2(1.29e-05)]_8_[+2(1.29e-05)]_\ 51 chr3:43812277-43812357 8.84e-03 62_[+2(4.08e-05)]_10 chr5:153121757-153121837 3.78e-02 40_[+1(2.37e-05)]_32 chr5:34924190-34924270 1.66e-03 31_[+2(5.57e-05)]_4_[+2(1.29e-05)]_\ 4_[+1(4.73e-05)]_17 chr6:4647964-4648044 9.99e-01 80 chr11:9025396-9025476 9.61e-01 80 chr20:57199059-57199139 2.49e-01 15_[+2(2.79e-05)]_13_[+2(5.57e-05)]_\ 36 chr12:111284896-11128497 3.54e-02 80 chr8:30585601-30585681 3.74e-01 80 chr3:183128224-183128304 8.68e-02 2_[+2(7.06e-05)]_70 chr1:57693107-57693187 1.14e-01 25_[+1(5.83e-05)]_47 chr7:88319280-88319360 5.13e-03 27_[+1(9.15e-05)]_25_[+5(2.98e-05)]_\ 12 chr16:24610244-24610324 6.96e-02 9_[+3(6.44e-05)]_[+3(6.44e-05)]_55 chr2:239147737-239147817 8.55e-01 80 chr7:151217333-151217413 9.90e-01 80 chr19:55987572-55987652 3.49e-01 80 chr9:125209212-125209292 2.67e-03 32_[+4(3.72e-05)]_40 chr6:28514932-28515012 7.71e-03 24_[+1(2.37e-05)]_13_[+5(9.02e-05)]_\ 27 chr11:58507324-58507404 1.68e-01 60_[+1(9.15e-05)]_12 chr16:231435-231515 9.82e-01 80 chr17:47269380-47269460 8.88e-01 80 chr5:176421991-176422071 2.92e-01 80 chr10:12307935-12308015 4.89e-03 6_[+4(1.30e-05)]_66 chr2:101476507-101476587 9.12e-01 80 chr7:92515494-92515574 2.12e-01 80 chr1:154909031-154909111 7.25e-01 80 chr7:22162902-22162982 2.55e-01 80 chr6:27741787-27741867 5.67e-02 80 chr5:180479708-180479788 5.20e-01 80 chr18:20248078-20248158 1.82e-02 7_[+2(4.08e-05)]_4_[+2(1.29e-05)]_\ 53 chr22:21910434-21910514 1.01e-01 39_[+2(5.57e-05)]_33 chr17:66470790-66470870 9.22e-01 80 chr2:153428926-153429006 2.93e-01 80 chr12:104802486-10480256 1.12e-03 29_[+2(5.57e-05)]_11_[+1(1.27e-05)]_\ 24 chr5:96519559-96519639 1.39e-01 80 chr1:26564195-26564275 1.18e-02 17_[+2(4.08e-05)]_55 chr8:61566428-61566508 1.04e-01 80 chr2:114261822-114261902 6.98e-02 80 chr4:48128829-48128909 7.27e-02 80 chr4:8338343-8338423 1.53e-02 22_[+2(1.29e-05)]_5_[+2(2.79e-05)]_\ 37 chr19:6425628-6425708 9.92e-01 80 chr19:21641015-21641095 4.38e-02 80 chr22:21448061-21448141 1.56e-02 32_[+1(1.27e-05)]_40 chr20:61493497-61493577 8.77e-01 80 chr1:37980628-37980708 2.78e-01 80 chr8:98788676-98788756 2.96e-01 17_[+3(9.53e-05)]_55 chr9:130461542-130461622 9.97e-01 80 chr1:153031928-153032008 1.94e-02 8_[+2(5.57e-05)]_64 chr1:110955894-110955974 5.04e-03 28_[+4(1.30e-05)]_44 chr6:89738563-89738643 6.04e-02 65_[+5(2.98e-05)]_7 chr3:47388911-47388991 5.42e-01 80 chr17:45929760-45929840 1.36e-02 65_[+3(4.20e-05)]_7 chr16:8192724-8192804 1.10e-01 80 chr8:144951155-144951235 1.84e-01 80 chr1:203296849-203296929 5.23e-01 80 chr11:94842359-94842439 8.15e-02 22_[+4(4.84e-05)]_50 chr1:28051997-28052077 2.13e-01 80 chr9:108409930-108410010 4.48e-02 42_[+4(2.60e-05)]_30 chr8:142036952-142037032 4.08e-02 17_[+1(1.27e-05)]_55 chr1:92446363-92446443 2.80e-02 80 chr19:50393346-50393426 9.94e-01 80 chr19:4247681-4247761 1.93e-02 14_[+3(9.70e-06)]_58 chr14:34513196-34513276 2.41e-02 5_[+5(9.02e-05)]_67 chr6:114292649-114292729 1.00e+00 80 chr3:195443205-195443285 9.31e-02 80 chr1:39583045-39583125 3.38e-05 48_[+2(5.57e-05)]_24 chr3:38191315-38191395 2.44e-01 80 chr6:40683624-40683704 7.19e-01 80 chr17:41074550-41074630 1.98e-01 80 chr6:35993442-35993522 5.67e-01 80 chr11:58912276-58912356 5.27e-01 80 chr16:3200348-3200428 8.99e-01 80 chr1:41405233-41405313 6.60e-03 28_[+4(1.30e-05)]_44 chr8:74284047-74284127 3.54e-02 [+4(1.30e-05)]_72 chr11:107436882-10743696 1.07e-04 10_[+1(3.46e-05)]_42_[+5(9.02e-05)]_\ 12 chr2:38591478-38591558 4.05e-02 44_[+1(3.46e-05)]_28 chr3:45709724-45709804 1.27e-03 10_[+2(8.18e-05)]_20_[+3(1.94e-05)]_\ 3_[+3(9.53e-05)]_23 chr11:93394601-93394681 6.90e-01 80 chr6:139818556-139818636 6.89e-03 59_[+4(1.30e-05)]_13 chr1:179941155-179941235 1.53e-06 42_[+1(1.27e-05)]_10_[+3(9.70e-06)]_\ 12 chr12:125389398-12538947 5.58e-01 80 chr1:36023575-36023655 8.73e-01 80 chr3:196758434-196758514 2.82e-01 80 chr15:75248658-75248738 9.70e-01 80 chr17:21220096-21220176 9.99e-01 80 chr2:170870534-170870614 4.26e-01 80 chr20:33301344-33301424 1.12e-03 27_[+1(1.27e-05)]_31_[+2(1.29e-05)]_\ 6 chr9:37120064-37120144 9.82e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************