******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RFX5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:129350479-129350559 1.0000 80 chr20:30483050-30483130 1.0000 80 chr12:29206634-29206714 1.0000 80 chr10:72147417-72147497 1.0000 80 chr6:33043613-33043693 1.0000 80 chr19:55840447-55840527 1.0000 80 chr6:33080087-33080167 1.0000 80 chr18:7830603-7830683 1.0000 80 chr5:149790998-149791078 1.0000 80 chr8:80813238-80813318 1.0000 80 chr21:39235095-39235175 1.0000 80 chr1:215821282-215821362 1.0000 80 chr8:86858683-86858763 1.0000 80 chr6:32784859-32784939 1.0000 80 chr1:175099444-175099524 1.0000 80 chr2:218298937-218299017 1.0000 80 chr1:30788504-30788584 1.0000 80 chr6:33041463-33041543 1.0000 80 chr5:70829646-70829726 1.0000 80 chr6:32441486-32441566 1.0000 80 chr14:102630859-10263093 1.0000 80 chr2:17702202-17702282 1.0000 80 chr6:32405369-32405449 1.0000 80 chr14:94575808-94575888 1.0000 80 chr19:36927629-36927709 1.0000 80 chr11:94987572-94987652 1.0000 80 chr4:77795501-77795581 1.0000 80 chr17:9720573-9720653 1.0000 80 chr8:86158365-86158445 1.0000 80 chr1:16563032-16563112 1.0000 80 chr2:47285670-47285750 1.0000 80 chr4:106631928-106632008 1.0000 80 chrX:106809652-106809732 1.0000 80 chr3:156835801-156835881 1.0000 80 chr8:130926244-130926324 1.0000 80 chr11:10336386-10336466 1.0000 80 chr6:32997341-32997421 1.0000 80 chr17:59647735-59647815 1.0000 80 chr11:3936209-3936289 1.0000 80 chr6:32977418-32977498 1.0000 80 chr15:78128878-78128958 1.0000 80 chr22:44576712-44576792 1.0000 80 chr12:14570774-14570854 1.0000 80 chr22:25534263-25534343 1.0000 80 chr10:11680232-11680312 1.0000 80 chr1:204174768-204174848 1.0000 80 chr6:32595828-32595908 1.0000 80 chr11:33369181-33369261 1.0000 80 chr2:161135017-161135097 1.0000 80 chr14:93640452-93640532 1.0000 80 chr5:134327983-134328063 1.0000 80 chr2:100088238-100088318 1.0000 80 chr6:136641029-136641109 1.0000 80 chr1:164672844-164672924 1.0000 80 chr6:32658157-32658237 1.0000 80 chr6:31325008-31325088 1.0000 80 chr6:29532801-29532881 1.0000 80 chr9:118982181-118982261 1.0000 80 chr7:22911868-22911948 1.0000 80 chr2:196916520-196916600 1.0000 80 chr11:47235900-47235980 1.0000 80 chr5:34592041-34592121 1.0000 80 chr16:50524886-50524966 1.0000 80 chr20:30947986-30948066 1.0000 80 chr6:69345789-69345869 1.0000 80 chr19:3857757-3857837 1.0000 80 chr6:45153269-45153349 1.0000 80 chr12:14561291-14561371 1.0000 80 chr6:32634514-32634594 1.0000 80 chr1:159158367-159158447 1.0000 80 chr16:67196472-67196552 1.0000 80 chr6:30227236-30227316 1.0000 80 chr10:47661861-47661941 1.0000 80 chr1:65935141-65935221 1.0000 80 chr10:97515353-97515433 1.0000 80 chr7:156347282-156347362 1.0000 80 chr4:4341272-4341352 1.0000 80 chrX:16623267-16623347 1.0000 80 chr3:100375952-100376032 1.0000 80 chr8:19607932-19608012 1.0000 80 chr21:21760915-21760995 1.0000 80 chr5:158671332-158671412 1.0000 80 chr6:43137552-43137632 1.0000 80 chr2:24007977-24008057 1.0000 80 chr15:56541408-56541488 1.0000 80 chrX:39060773-39060853 1.0000 80 chr16:53910859-53910939 1.0000 80 chr4:57257592-57257672 1.0000 80 chr1:207927106-207927186 1.0000 80 chr12:14569692-14569772 1.0000 80 chr10:81127642-81127722 1.0000 80 chr2:228250459-228250539 1.0000 80 chr1:156877358-156877438 1.0000 80 chr5:149792497-149792577 1.0000 80 chr3:144812501-144812581 1.0000 80 chr20:25520978-25521058 1.0000 80 chr19:50703420-50703500 1.0000 80 chr6:29520487-29520567 1.0000 80 chr5:118603875-118603955 1.0000 80 chr4:26332005-26332085 1.0000 80 chr19:49163200-49163280 1.0000 80 chr2:32205928-32206008 1.0000 80 chr9:92104985-92105065 1.0000 80 chr16:12074575-12074655 1.0000 80 chr2:170687997-170688077 1.0000 80 chr17:2193307-2193387 1.0000 80 chr7:70390496-70390576 1.0000 80 chr7:44389072-44389152 1.0000 80 chr17:78751256-78751336 1.0000 80 chr6:32557614-32557694 1.0000 80 chr20:47349923-47350003 1.0000 80 chr19:47178239-47178319 1.0000 80 chr6:29691073-29691153 1.0000 80 chr5:133927122-133927202 1.0000 80 chr22:36494073-36494153 1.0000 80 chr7:93144616-93144696 1.0000 80 chr17:33020127-33020207 1.0000 80 chr19:49285850-49285930 1.0000 80 chr6:32920940-32921020 1.0000 80 chr1:229483468-229483548 1.0000 80 chr11:69492665-69492745 1.0000 80 chr17:6265182-6265262 1.0000 80 chr6:32908844-32908924 1.0000 80 chr11:62323744-62323824 1.0000 80 chr7:70172827-70172907 1.0000 80 chr6:31239916-31239996 1.0000 80 chr1:27917568-27917648 1.0000 80 chr17:42728761-42728841 1.0000 80 chr5:149789471-149789551 1.0000 80 chr7:140683748-140683828 1.0000 80 chr1:160323207-160323287 1.0000 80 chr5:8578049-8578129 1.0000 80 chr6:134373787-134373867 1.0000 80 chr6:32812483-32812563 1.0000 80 chr19:38586445-38586525 1.0000 80 chr5:112563645-112563725 1.0000 80 chr12:67835732-67835812 1.0000 80 chr19:42570332-42570412 1.0000 80 chr11:69455844-69455924 1.0000 80 chr3:132843518-132843598 1.0000 80 chr5:133576518-133576598 1.0000 80 chr5:173270962-173271042 1.0000 80 chr6:32407519-32407599 1.0000 80 chr6:131783282-131783362 1.0000 80 chr12:4381215-4381295 1.0000 80 chr19:47082702-47082782 1.0000 80 chr11:72510662-72510742 1.0000 80 chr19:11362068-11362148 1.0000 80 chr2:183507204-183507284 1.0000 80 chr7:150871985-150872065 1.0000 80 chrX:149784758-149784838 1.0000 80 chr1:228263214-228263294 1.0000 80 chr14:100208583-10020866 1.0000 80 chr12:120450232-12045031 1.0000 80 chr11:34975699-34975779 1.0000 80 chr20:34562318-34562398 1.0000 80 chr2:173504689-173504769 1.0000 80 chr15:43738722-43738802 1.0000 80 chr2:198753861-198753941 1.0000 80 chr1:2302822-2302902 1.0000 80 chr9:137341588-137341668 1.0000 80 chr22:29518145-29518225 1.0000 80 chr7:100401299-100401379 1.0000 80 chr7:18297525-18297605 1.0000 80 chr12:66627992-66628072 1.0000 80 chr16:66751170-66751250 1.0000 80 chr10:22792892-22792972 1.0000 80 chr2:197546396-197546476 1.0000 80 chr10:64134935-64135015 1.0000 80 chr19:51109665-51109745 1.0000 80 chr6:168506655-168506735 1.0000 80 chr6:30181248-30181328 1.0000 80 chr19:47854926-47855006 1.0000 80 chr15:80237135-80237215 1.0000 80 chr18:3664368-3664448 1.0000 80 chr11:68574580-68574660 1.0000 80 chr12:54090150-54090230 1.0000 80 chr3:167834314-167834394 1.0000 80 chr1:12626198-12626278 1.0000 80 chr6:32577728-32577808 1.0000 80 chr12:117518716-11751879 1.0000 80 chr10:102241404-10224148 1.0000 80 chr19:41098192-41098272 1.0000 80 chr17:6735035-6735115 1.0000 80 chr6:31430811-31430891 1.0000 80 chr5:149790270-149790350 1.0000 80 chr4:184793797-184793877 1.0000 80 chr4:79566003-79566083 1.0000 80 chr12:50219307-50219387 1.0000 80 chr1:31688021-31688101 1.0000 80 chr17:64807224-64807304 1.0000 80 chr12:57609635-57609715 1.0000 80 chr6:26440627-26440707 1.0000 80 chr11:62272742-62272822 1.0000 80 chr4:99873078-99873158 1.0000 80 chr6:26458017-26458097 1.0000 80 chr11:69453836-69453916 1.0000 80 chr19:18215329-18215409 1.0000 80 chr2:9471940-9472020 1.0000 80 chr10:31074324-31074404 1.0000 80 chr20:305991-306071 1.0000 80 chr19:36822656-36822736 1.0000 80 chr17:79603436-79603516 1.0000 80 chr5:57021607-57021687 1.0000 80 chr16:83929017-83929097 1.0000 80 chr19:41283475-41283555 1.0000 80 chr1:51887785-51887865 1.0000 80 chr6:26365403-26365483 1.0000 80 chr1:203296554-203296634 1.0000 80 chr16:16002088-16002168 1.0000 80 chr19:50934978-50935058 1.0000 80 chr11:72433599-72433679 1.0000 80 chr3:193577190-193577270 1.0000 80 chrX:40791347-40791427 1.0000 80 chr9:99445673-99445753 1.0000 80 chr19:39752532-39752612 1.0000 80 chr5:36417479-36417559 1.0000 80 chr10:73682641-73682721 1.0000 80 chr12:6873545-6873625 1.0000 80 chr4:166319846-166319926 1.0000 80 chr1:7764654-7764734 1.0000 80 chr11:47965362-47965442 1.0000 80 chr13:97910206-97910286 1.0000 80 chr6:116550566-116550646 1.0000 80 chr6:26402469-26402549 1.0000 80 chr13:45009529-45009609 1.0000 80 chr21:15227089-15227169 1.0000 80 chr7:22206668-22206748 1.0000 80 chr17:80309753-80309833 1.0000 80 chr19:6536225-6536305 1.0000 80 chr1:207998104-207998184 1.0000 80 chr10:46168276-46168356 1.0000 80 chr7:65398079-65398159 1.0000 80 chr1:181002980-181003060 1.0000 80 chr17:5765354-5765434 1.0000 80 chr6:26421502-26421582 1.0000 80 chr15:52944252-52944332 1.0000 80 chr1:150534683-150534763 1.0000 80 chr1:46049211-46049291 1.0000 80 chr19:45430453-45430533 1.0000 80 chr1:43195840-43195920 1.0000 80 chr4:187680596-187680676 1.0000 80 chr12:117818078-11781815 1.0000 80 chr14:57476823-57476903 1.0000 80 chr10:103348865-10334894 1.0000 80 chr19:10565109-10565189 1.0000 80 chr19:21688283-21688363 1.0000 80 chr10:112631576-11263165 1.0000 80 chrX:53111322-53111402 1.0000 80 chr11:86454923-86455003 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RFX5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RFX5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.259 C 0.24 G 0.242 T 0.259 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.24 G 0.242 T 0.259 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTAGYAAC MEME-1 width = 8 sites = 113 llr = 849 E-value = 2.0e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAGYAAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:7118a: pos.-specific C 83::6::a probability G ::39:2:: matrix T 17::3::: bits 2.1 * 1.9 ** 1.6 * ** 1.4 * ** Relative 1.2 * * *** Entropy 1.0 **** *** (10.8 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAGCAAC consensus CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGYAAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:86454923-86455003 34 1.49e-05 TCATTATCCC CTAGCAAC TGCTTATGCT chr1:181002980-181003060 39 1.49e-05 TTTTTTTAAC CTAGCAAC TGATGACACT chr13:45009529-45009609 43 1.49e-05 CAGAGTTTGC CTAGCAAC AGTGGGCAGA chr10:31074324-31074404 50 1.49e-05 TGTCGCCATC CTAGCAAC TCGAGCTTAC chr4:99873078-99873158 44 1.49e-05 gtacatctgc ctagcaac tgcctgtcca chr11:62272742-62272822 34 1.49e-05 AAAAATCTGC CTAGCAAC GGGTCATGAG chr1:31688021-31688101 59 1.49e-05 GGAAGTCTGC CTAGCAAC AGCAGTGGGT chr19:41098192-41098272 32 1.49e-05 tctttcttcc ctagcaac agcaaaaatc chr3:167834314-167834394 37 1.49e-05 TCTCTTCTAC CTAGCAAC TGCTTGTCTG chr12:54090150-54090230 30 1.49e-05 CGATTTCTGC CTAGCAAC ATCACAACCA chr19:47854926-47855006 20 1.49e-05 cttttctgtc ctagcaac cgagtgtaaa chr1:228263214-228263294 20 1.49e-05 TAGTCTGATC CTAGCAAC CAGAGTCACC chr6:32407519-32407599 38 1.49e-05 AACCCTTCCC CTAGCAAC AGATGCGTCA chr7:70172827-70172907 31 1.49e-05 GGGCATTTCC CTAGCAAC CGATGACATA chr7:44389072-44389152 39 1.49e-05 TGAACTCTAC CTAGCAAC AAGATTAGCA chr2:32205928-32206008 27 1.49e-05 ACCCTTCCAT CTAGCAAC AGATGACTAA chr3:144812501-144812581 47 1.49e-05 caaatcctac ctagcaac tgctgacact chr16:50524886-50524966 38 1.49e-05 tccgctctcc ctagcaac tggtgatggt chr15:78128878-78128958 13 1.49e-05 CCTCCTGCAC CTAGCAAC GGAGAAACCA chr19:45430453-45430533 34 3.09e-05 CAGGAGAGCC CTAGTAAC CGATGACGTA chr6:26421502-26421582 43 3.09e-05 TGTATTCTAC CTAGTAAC TGCTGAGAAA chr11:69453836-69453916 38 3.09e-05 CCCGGTCCGC CTAGTAAC AGCGCCGCGC chr12:50219307-50219387 35 3.09e-05 CAGCTTCTGC CTAGTAAC AGCTGCATCC chr11:69492665-69492745 56 3.09e-05 cgcagcctca ctagtaac caaagcaatg chr7:70390496-70390576 32 3.09e-05 gaaatcttcc ctagtaac cgtctggctt chr2:24007977-24008057 30 3.09e-05 CTCATTCTTC CTAGTAAC AGATGAGGTA chr8:86158365-86158445 32 3.09e-05 AGGACTTTGC CTAGTAAC AGCCACGTAT chr4:77795501-77795581 35 3.09e-05 CAGCTTCTGC CTAGTAAC AGGCCATTTG chr19:6536225-6536305 24 4.49e-05 AATAAGACCc ctggcaac aggtgattca chr12:6873545-6873625 38 4.49e-05 AGCATTCCAC CTGGCAAC AGGGTTTCTA chr10:73682641-73682721 41 4.49e-05 ggacatctgc ctggcaac tgcctgtcca chr11:72433599-72433679 33 4.49e-05 AAGTTCTGCC CTGGCAAC AAGTGATCAG chr19:50934978-50935058 30 4.49e-05 GGCAGTCTGC CTGGCAAC CCGTGACATC chr19:51109665-51109745 20 4.49e-05 TCGTGTCATC CTGGCAAC CCTGTCCTAC chr1:229483468-229483548 32 4.49e-05 tcttatgccc ctggcaac agctgcgcat chr11:33369181-33369261 32 4.49e-05 TGGTGCCTGC CTGGCAAC AGGTGACACC chr19:36927629-36927709 33 4.49e-05 caaatcctac ctggcaac taatgacaca chr5:149790998-149791078 45 4.49e-05 CCCTTTCTGC CTGGCAAC AGCTGACATC chr19:21688283-21688363 34 5.87e-05 TTCATTCTGC CCAGCAAC TGATCACCCT chr17:80309753-80309833 19 5.87e-05 TCAGTTCTTC CCAGCAAC CAGTCCAGAG chr11:47965362-47965442 3 5.87e-05 tc ccagcaac caattaggtc chr20:305991-306071 39 5.87e-05 GCTTCTCTGC CCAGCAAC GGGTGACGCG chr6:26458017-26458097 51 5.87e-05 TGTATTCTAC CCAGCAAC TGCTGAGAAA chr6:26440627-26440707 40 5.87e-05 TGGTTTCCTC CCAGCAAC TGATGAGAAA chr17:64807224-64807304 27 5.87e-05 CAAGGGATGC CCAGCAAC TGATGACATC chr6:32812483-32812563 24 5.87e-05 CCTCATCTAC CCAGCAAC TGTCGACGTC chr11:62323744-62323824 14 5.87e-05 AGAAAACTGC CCAGCAAC CACAGACATC chr11:94987572-94987652 23 5.87e-05 AGTTTTCCAC CCAGCAAC AGGATGATGT chr1:215821282-215821362 35 5.87e-05 TGCTGTTTAC CCAGCAAC TAGTGATCCT chr12:67835732-67835812 49 8.77e-05 TCTAATCTGC CTGGTAAC AGGCGCTCTT chr5:149789471-149789551 30 8.77e-05 TCCCTTGTGC CTGGTAAC TCATGACATC chr2:218298937-218299017 33 8.77e-05 GAGGCTCTGC CTGGTAAC AGAGCTCTGA chr15:52944252-52944332 22 1.04e-04 AAGAGCGCAC ATAGCAAC AGCACTCACA chr12:57609635-57609715 22 1.04e-04 GCCTCAGTGC ATAGCAAC AGCTGACAGC chr5:133576518-133576598 47 1.04e-04 TGTCGTCTGC ATAGCAAC ATGCAGCCCA chr5:112563645-112563725 38 1.04e-04 CAGGTATTAC ATAGCAAC AGATGATGCT chr6:32920940-32921020 64 1.19e-04 ACGCCTGGGG CCAGTAAC CTCCTGAAG chr4:26332005-26332085 56 1.35e-04 GTTTTTCTAC CTAGAAAC CCACGTAGAA chr6:45153269-45153349 33 1.35e-04 caagttttac ctagaaac tgtcactcac chr12:66627992-66628072 34 1.63e-04 CCGGTGCTGC CTAGTGAC AGATGACTCA chr9:137341588-137341668 27 1.63e-04 CAGAGTGCAC CCGGCAAC CAAACTGGTG chr17:6265182-6265262 33 1.63e-04 tgtattttac ccggcaac tcaatatggg chr19:49285850-49285930 30 1.63e-04 TGCCCAGCCA CTAGTGAC GTCATGGGCT chr22:36494073-36494153 46 1.63e-04 gtacatttcc ctagtgac taatgacgtg chr16:12074575-12074655 21 1.63e-04 ttgcatttcc ctagtgac tagtgatgtt chr10:47661861-47661941 47 1.63e-04 tggcatttcc ctagtgac tagtgatgtg chr2:161135017-161135097 56 1.63e-04 CCGGTGCTGC CTAGTGAC AGATGACTCA chr11:3936209-3936289 25 1.63e-04 ttgtgtttcc ctagtgac taatgatgtt chr6:32997341-32997421 32 1.63e-04 CTGCCAGAAA CTAGTGAC ACTGCCTTTC chr19:55840447-55840527 21 1.63e-04 ttgtattgcc ctagtgac taatgacgtt chr4:166319846-166319926 33 1.92e-04 ACAGAACGGC TTAGCAAC TGAAGACAGA chr17:33020127-33020207 18 1.92e-04 AGTAAGTTCC TTAGCAAC TGATGACACA chr11:10336386-10336466 21 1.92e-04 gtttaaacac ttagcaac ctgtgagtag chr2:197546396-197546476 34 2.09e-04 ttgtatttcc atagtaac taatgacgtt chr17:59647735-59647815 35 2.09e-04 ttgcatttcc atagtaac aagtgatgct chr7:150871985-150872065 24 2.38e-04 GGAACTCTGT CCAGCGAC CCTTGACGTC chr9:92104985-92105065 31 2.38e-04 tcacatttcc ctaacaac taatgatgtt chr5:158671332-158671412 36 2.38e-04 ttgcatttcc ctaacaac tgatgatgtt chr4:106631928-106632008 34 2.53e-04 TTATGACTCC ATGGCAAC AGATGATTCC chr12:4381215-4381295 17 2.67e-04 aGTAATCTGC CCGGTAAC AATCAGCGCG chr2:9471940-9472020 30 2.97e-04 CCAATACCTG CTGGAAAC CACTGTGACC chr10:103348865-10334894 35 3.28e-04 AAGATAACAA CTGGTGAC TCATGTTCAC chr13:97910206-97910286 45 3.28e-04 ATGATGACAA CTGGTGAC GGCAGGGAAG chr15:80237135-80237215 25 3.28e-04 AGCTTTCTTC CTGGTGAC AGATGACATC chrX:149784758-149784838 28 3.58e-04 AATTGTCTCC CCAGAAAC ACTGACGTCA chr1:203296554-203296634 29 4.04e-04 AAGCCCCACC TTGGCAAC AAGCCGCTGA chr1:65935141-65935221 35 4.04e-04 ATATATACTG TTGGCAAC AGATGACTAA chr6:116550566-116550646 55 4.35e-04 AGCGGTTGTC ATGGTAAC AGGGGCAAAG chr1:207998104-207998184 73 4.77e-04 CCAAGAAGAT CTGACAAC chr11:68574580-68574660 34 4.77e-04 CATTTAATGC CTGACAAC AAGTGAGTCA chr2:173504689-173504769 36 4.77e-04 GACATTTGCC TCAGCAAC AGATGACTAG chr11:69455844-69455924 19 4.93e-04 TTGCTTAACA ACAGTAAC GTCACACGGA chr5:57021607-57021687 28 5.40e-04 ATTGCCGTGC ATAGAAAC TGATGACTGC chr6:168506655-168506735 32 5.40e-04 ccagagatgt atagaaac cctagttact chr2:100088238-100088318 63 5.40e-04 ggaaatgcaa atagaaac cacaatgaga chr2:198753861-198753941 37 5.70e-04 tccgagaagc atagtgac tagtgagtca chr16:83929017-83929097 23 6.01e-04 ttacatttcc ctaacgac taatgacgtt chr17:78751256-78751336 40 6.01e-04 ttgcatctcc ctaacgac taatgacatc chr19:10565109-10565189 42 6.29e-04 TCCCATCGCC ATGGCGAC GGGATTCTCC chr19:36822656-36822736 9 6.29e-04 GCGGGCTT CCGGAAAC GGCGGCCAAT chr6:136641029-136641109 32 6.74e-04 ctccatgtca tcagtaac caaggaaatg chr4:4341272-4341352 18 7.37e-04 cataagctgc ttagaaac agagttcatt chr1:175099444-175099524 24 7.37e-04 TATTATCTGC ACAGCGAC ATCTGACGGT chr19:39752532-39752612 35 7.83e-04 aaaatgtcag ccaataac cagtcaacta chr17:79603436-79603516 44 7.83e-04 GCTGCTCTCC TTAGTGAC TCATGACAAG chr10:102241404-10224148 29 7.83e-04 AAGAATCCAC TCGGCAAC TACTTACGTC chr1:207927106-207927186 68 7.83e-04 TATTTAGGAT CCAATAAC ATGTA chr10:97515353-97515433 12 7.83e-04 AGCCTTCCAA CCAATAAC GCAGCGTCTC chr8:86858683-86858763 2 7.83e-04 a ccaataac aagtctggca chr20:25520978-25521058 20 8.29e-04 GGATGCTGCC CCAGAGAC ATATGACGTT chr19:3857757-3857837 73 8.29e-04 CTGTACTACA CCAGAGAC chr5:118603875-118603955 10 8.89e-04 TCTCCGCAA ATGGAAAC CAGGAATCGG chr19:47082702-47082782 55 9.04e-04 ATCTGTTGCC ATGGTGAC AGCCATCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGYAAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:86454923-86455003 1.5e-05 33_[+1]_39 chr1:181002980-181003060 1.5e-05 38_[+1]_34 chr13:45009529-45009609 1.5e-05 42_[+1]_30 chr10:31074324-31074404 1.5e-05 49_[+1]_23 chr4:99873078-99873158 1.5e-05 43_[+1]_29 chr11:62272742-62272822 1.5e-05 33_[+1]_39 chr1:31688021-31688101 1.5e-05 58_[+1]_14 chr19:41098192-41098272 1.5e-05 31_[+1]_41 chr3:167834314-167834394 1.5e-05 36_[+1]_36 chr12:54090150-54090230 1.5e-05 29_[+1]_43 chr19:47854926-47855006 1.5e-05 19_[+1]_53 chr1:228263214-228263294 1.5e-05 19_[+1]_53 chr6:32407519-32407599 1.5e-05 37_[+1]_35 chr7:70172827-70172907 1.5e-05 30_[+1]_42 chr7:44389072-44389152 1.5e-05 38_[+1]_34 chr2:32205928-32206008 1.5e-05 26_[+1]_46 chr3:144812501-144812581 1.5e-05 46_[+1]_26 chr16:50524886-50524966 1.5e-05 37_[+1]_35 chr15:78128878-78128958 1.5e-05 12_[+1]_60 chr19:45430453-45430533 3.1e-05 33_[+1]_39 chr6:26421502-26421582 3.1e-05 42_[+1]_30 chr11:69453836-69453916 3.1e-05 37_[+1]_35 chr12:50219307-50219387 3.1e-05 34_[+1]_38 chr11:69492665-69492745 3.1e-05 55_[+1]_17 chr7:70390496-70390576 3.1e-05 31_[+1]_41 chr2:24007977-24008057 3.1e-05 29_[+1]_43 chr8:86158365-86158445 3.1e-05 31_[+1]_41 chr4:77795501-77795581 3.1e-05 34_[+1]_38 chr19:6536225-6536305 4.5e-05 23_[+1]_49 chr12:6873545-6873625 4.5e-05 37_[+1]_35 chr10:73682641-73682721 4.5e-05 40_[+1]_32 chr11:72433599-72433679 4.5e-05 32_[+1]_40 chr19:50934978-50935058 4.5e-05 29_[+1]_43 chr19:51109665-51109745 4.5e-05 19_[+1]_53 chr1:229483468-229483548 4.5e-05 31_[+1]_41 chr11:33369181-33369261 4.5e-05 31_[+1]_41 chr19:36927629-36927709 4.5e-05 32_[+1]_40 chr5:149790998-149791078 4.5e-05 44_[+1]_28 chr19:21688283-21688363 5.9e-05 33_[+1]_39 chr17:80309753-80309833 5.9e-05 18_[+1]_54 chr11:47965362-47965442 5.9e-05 2_[+1]_70 chr20:305991-306071 5.9e-05 38_[+1]_34 chr6:26458017-26458097 5.9e-05 50_[+1]_22 chr6:26440627-26440707 5.9e-05 39_[+1]_33 chr17:64807224-64807304 5.9e-05 26_[+1]_46 chr6:32812483-32812563 5.9e-05 23_[+1]_49 chr11:62323744-62323824 5.9e-05 13_[+1]_59 chr11:94987572-94987652 5.9e-05 22_[+1]_50 chr1:215821282-215821362 5.9e-05 34_[+1]_38 chr12:67835732-67835812 8.8e-05 48_[+1]_24 chr5:149789471-149789551 8.8e-05 29_[+1]_43 chr2:218298937-218299017 8.8e-05 32_[+1]_40 chr15:52944252-52944332 0.0001 21_[+1]_51 chr12:57609635-57609715 0.0001 21_[+1]_51 chr5:133576518-133576598 0.0001 46_[+1]_26 chr5:112563645-112563725 0.0001 37_[+1]_35 chr6:32920940-32921020 0.00012 63_[+1]_9 chr4:26332005-26332085 0.00013 55_[+1]_17 chr6:45153269-45153349 0.00013 32_[+1]_40 chr12:66627992-66628072 0.00016 33_[+1]_39 chr9:137341588-137341668 0.00016 26_[+1]_46 chr17:6265182-6265262 0.00016 32_[+1]_40 chr19:49285850-49285930 0.00016 29_[+1]_43 chr22:36494073-36494153 0.00016 45_[+1]_27 chr16:12074575-12074655 0.00016 20_[+1]_52 chr10:47661861-47661941 0.00016 46_[+1]_26 chr2:161135017-161135097 0.00016 55_[+1]_17 chr11:3936209-3936289 0.00016 24_[+1]_48 chr6:32997341-32997421 0.00016 31_[+1]_41 chr19:55840447-55840527 0.00016 20_[+1]_52 chr4:166319846-166319926 0.00019 32_[+1]_40 chr17:33020127-33020207 0.00019 17_[+1]_55 chr11:10336386-10336466 0.00019 20_[+1]_52 chr2:197546396-197546476 0.00021 33_[+1]_39 chr17:59647735-59647815 0.00021 34_[+1]_38 chr7:150871985-150872065 0.00024 23_[+1]_49 chr9:92104985-92105065 0.00024 30_[+1]_42 chr5:158671332-158671412 0.00024 35_[+1]_37 chr4:106631928-106632008 0.00025 33_[+1]_39 chr12:4381215-4381295 0.00027 16_[+1]_56 chr2:9471940-9472020 0.0003 29_[+1]_43 chr10:103348865-10334894 0.00033 34_[+1]_38 chr13:97910206-97910286 0.00033 44_[+1]_28 chr15:80237135-80237215 0.00033 24_[+1]_48 chrX:149784758-149784838 0.00036 27_[+1]_45 chr1:203296554-203296634 0.0004 28_[+1]_44 chr1:65935141-65935221 0.0004 34_[+1]_38 chr6:116550566-116550646 0.00044 54_[+1]_18 chr1:207998104-207998184 0.00048 72_[+1] chr11:68574580-68574660 0.00048 33_[+1]_39 chr2:173504689-173504769 0.00048 35_[+1]_37 chr11:69455844-69455924 0.00049 18_[+1]_54 chr5:57021607-57021687 0.00054 27_[+1]_45 chr6:168506655-168506735 0.00054 31_[+1]_41 chr2:100088238-100088318 0.00054 62_[+1]_10 chr2:198753861-198753941 0.00057 36_[+1]_36 chr16:83929017-83929097 0.0006 22_[+1]_50 chr17:78751256-78751336 0.0006 39_[+1]_33 chr19:10565109-10565189 0.00063 41_[+1]_31 chr19:36822656-36822736 0.00063 8_[+1]_64 chr6:136641029-136641109 0.00067 31_[+1]_41 chr4:4341272-4341352 0.00074 17_[+1]_55 chr1:175099444-175099524 0.00074 23_[+1]_49 chr19:39752532-39752612 0.00078 34_[+1]_38 chr17:79603436-79603516 0.00078 43_[+1]_29 chr10:102241404-10224148 0.00078 28_[+1]_44 chr1:207927106-207927186 0.00078 67_[+1]_5 chr10:97515353-97515433 0.00078 11_[+1]_61 chr8:86858683-86858763 0.00078 1_[+1]_71 chr20:25520978-25521058 0.00083 19_[+1]_53 chr19:3857757-3857837 0.00083 72_[+1] chr5:118603875-118603955 0.00089 9_[+1]_63 chr19:47082702-47082782 0.0009 54_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGYAAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAGYAAC width=8 seqs=113 chr11:86454923-86455003 ( 34) CTAGCAAC 1 chr1:181002980-181003060 ( 39) CTAGCAAC 1 chr13:45009529-45009609 ( 43) CTAGCAAC 1 chr10:31074324-31074404 ( 50) CTAGCAAC 1 chr4:99873078-99873158 ( 44) CTAGCAAC 1 chr11:62272742-62272822 ( 34) CTAGCAAC 1 chr1:31688021-31688101 ( 59) CTAGCAAC 1 chr19:41098192-41098272 ( 32) CTAGCAAC 1 chr3:167834314-167834394 ( 37) CTAGCAAC 1 chr12:54090150-54090230 ( 30) CTAGCAAC 1 chr19:47854926-47855006 ( 20) CTAGCAAC 1 chr1:228263214-228263294 ( 20) CTAGCAAC 1 chr6:32407519-32407599 ( 38) CTAGCAAC 1 chr7:70172827-70172907 ( 31) CTAGCAAC 1 chr7:44389072-44389152 ( 39) CTAGCAAC 1 chr2:32205928-32206008 ( 27) CTAGCAAC 1 chr3:144812501-144812581 ( 47) CTAGCAAC 1 chr16:50524886-50524966 ( 38) CTAGCAAC 1 chr15:78128878-78128958 ( 13) CTAGCAAC 1 chr19:45430453-45430533 ( 34) CTAGTAAC 1 chr6:26421502-26421582 ( 43) CTAGTAAC 1 chr11:69453836-69453916 ( 38) CTAGTAAC 1 chr12:50219307-50219387 ( 35) CTAGTAAC 1 chr11:69492665-69492745 ( 56) CTAGTAAC 1 chr7:70390496-70390576 ( 32) CTAGTAAC 1 chr2:24007977-24008057 ( 30) CTAGTAAC 1 chr8:86158365-86158445 ( 32) CTAGTAAC 1 chr4:77795501-77795581 ( 35) CTAGTAAC 1 chr19:6536225-6536305 ( 24) CTGGCAAC 1 chr12:6873545-6873625 ( 38) CTGGCAAC 1 chr10:73682641-73682721 ( 41) CTGGCAAC 1 chr11:72433599-72433679 ( 33) CTGGCAAC 1 chr19:50934978-50935058 ( 30) CTGGCAAC 1 chr19:51109665-51109745 ( 20) CTGGCAAC 1 chr1:229483468-229483548 ( 32) CTGGCAAC 1 chr11:33369181-33369261 ( 32) CTGGCAAC 1 chr19:36927629-36927709 ( 33) CTGGCAAC 1 chr5:149790998-149791078 ( 45) CTGGCAAC 1 chr19:21688283-21688363 ( 34) CCAGCAAC 1 chr17:80309753-80309833 ( 19) CCAGCAAC 1 chr11:47965362-47965442 ( 3) CCAGCAAC 1 chr20:305991-306071 ( 39) CCAGCAAC 1 chr6:26458017-26458097 ( 51) CCAGCAAC 1 chr6:26440627-26440707 ( 40) CCAGCAAC 1 chr17:64807224-64807304 ( 27) CCAGCAAC 1 chr6:32812483-32812563 ( 24) CCAGCAAC 1 chr11:62323744-62323824 ( 14) CCAGCAAC 1 chr11:94987572-94987652 ( 23) CCAGCAAC 1 chr1:215821282-215821362 ( 35) CCAGCAAC 1 chr12:67835732-67835812 ( 49) CTGGTAAC 1 chr5:149789471-149789551 ( 30) CTGGTAAC 1 chr2:218298937-218299017 ( 33) CTGGTAAC 1 chr15:52944252-52944332 ( 22) ATAGCAAC 1 chr12:57609635-57609715 ( 22) ATAGCAAC 1 chr5:133576518-133576598 ( 47) ATAGCAAC 1 chr5:112563645-112563725 ( 38) ATAGCAAC 1 chr6:32920940-32921020 ( 64) CCAGTAAC 1 chr4:26332005-26332085 ( 56) CTAGAAAC 1 chr6:45153269-45153349 ( 33) CTAGAAAC 1 chr12:66627992-66628072 ( 34) CTAGTGAC 1 chr9:137341588-137341668 ( 27) CCGGCAAC 1 chr17:6265182-6265262 ( 33) CCGGCAAC 1 chr19:49285850-49285930 ( 30) CTAGTGAC 1 chr22:36494073-36494153 ( 46) CTAGTGAC 1 chr16:12074575-12074655 ( 21) CTAGTGAC 1 chr10:47661861-47661941 ( 47) CTAGTGAC 1 chr2:161135017-161135097 ( 56) CTAGTGAC 1 chr11:3936209-3936289 ( 25) CTAGTGAC 1 chr6:32997341-32997421 ( 32) CTAGTGAC 1 chr19:55840447-55840527 ( 21) CTAGTGAC 1 chr4:166319846-166319926 ( 33) TTAGCAAC 1 chr17:33020127-33020207 ( 18) TTAGCAAC 1 chr11:10336386-10336466 ( 21) TTAGCAAC 1 chr2:197546396-197546476 ( 34) ATAGTAAC 1 chr17:59647735-59647815 ( 35) ATAGTAAC 1 chr7:150871985-150872065 ( 24) CCAGCGAC 1 chr9:92104985-92105065 ( 31) CTAACAAC 1 chr5:158671332-158671412 ( 36) CTAACAAC 1 chr4:106631928-106632008 ( 34) ATGGCAAC 1 chr12:4381215-4381295 ( 17) CCGGTAAC 1 chr2:9471940-9472020 ( 30) CTGGAAAC 1 chr10:103348865-10334894 ( 35) CTGGTGAC 1 chr13:97910206-97910286 ( 45) CTGGTGAC 1 chr15:80237135-80237215 ( 25) CTGGTGAC 1 chrX:149784758-149784838 ( 28) CCAGAAAC 1 chr1:203296554-203296634 ( 29) TTGGCAAC 1 chr1:65935141-65935221 ( 35) TTGGCAAC 1 chr6:116550566-116550646 ( 55) ATGGTAAC 1 chr1:207998104-207998184 ( 73) CTGACAAC 1 chr11:68574580-68574660 ( 34) CTGACAAC 1 chr2:173504689-173504769 ( 36) TCAGCAAC 1 chr11:69455844-69455924 ( 19) ACAGTAAC 1 chr5:57021607-57021687 ( 28) ATAGAAAC 1 chr6:168506655-168506735 ( 32) ATAGAAAC 1 chr2:100088238-100088318 ( 63) ATAGAAAC 1 chr2:198753861-198753941 ( 37) ATAGTGAC 1 chr16:83929017-83929097 ( 23) CTAACGAC 1 chr17:78751256-78751336 ( 40) CTAACGAC 1 chr19:10565109-10565189 ( 42) ATGGCGAC 1 chr19:36822656-36822736 ( 9) CCGGAAAC 1 chr6:136641029-136641109 ( 32) TCAGTAAC 1 chr4:4341272-4341352 ( 18) TTAGAAAC 1 chr1:175099444-175099524 ( 24) ACAGCGAC 1 chr19:39752532-39752612 ( 35) CCAATAAC 1 chr17:79603436-79603516 ( 44) TTAGTGAC 1 chr10:102241404-10224148 ( 29) TCGGCAAC 1 chr1:207927106-207927186 ( 68) CCAATAAC 1 chr10:97515353-97515433 ( 12) CCAATAAC 1 chr8:86858683-86858763 ( 2) CCAATAAC 1 chr20:25520978-25521058 ( 20) CCAGAGAC 1 chr19:3857757-3857837 ( 73) CCAGAGAC 1 chr5:118603875-118603955 ( 10) ATGGAAAC 1 chr19:47082702-47082782 ( 55) ATGGTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGYAAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.56083 E= 2.0e-062 -78 166 -1346 -155 -1346 9 -1346 152 149 -1346 18 -1346 -155 -1346 191 -1346 -128 121 -1346 37 164 -1346 -31 -1346 195 -1346 -1346 -1346 -1346 206 -1346 -1346 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGYAAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 113 E= 2.0e-062 0.150442 0.761062 0.000000 0.088496 0.000000 0.256637 0.000000 0.743363 0.725664 0.000000 0.274336 0.000000 0.088496 0.000000 0.911504 0.000000 0.106195 0.557522 0.000000 0.336283 0.805310 0.000000 0.194690 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGYAAC MEME-1 regular expression -------------------------------------------------------------------------------- C[TC][AG]G[CT]AAC -------------------------------------------------------------------------------- Time 4.95 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTGCYAG MEME-2 width = 8 sites = 99 llr = 737 E-value = 9.4e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTGCYAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::2::71 pos.-specific C ::2:94:: probability G a::6::38 matrix T :a8216:2 bits 2.1 * 1.9 ** 1.6 ** * 1.4 ** * Relative 1.2 *** * * Entropy 1.0 *** **** (10.7 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTGCTAG consensus CA CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:99445673-99445753 52 1.52e-05 agtgtcagca gttgctag ataggacttg chr16:16002088-16002168 68 1.52e-05 ttgccttggg gttgctag gtagg chr19:41283475-41283555 39 1.52e-05 AACGTCAGTG GTTGCTAG GCAGAGTTTC chr4:184793797-184793877 32 1.52e-05 TGACATAGCT GTTGCTAG GGTAAGCGTG chr10:64134935-64135015 22 1.52e-05 ACAGTCATCT GTTGCTAG GGTGAAGATA chr12:120450232-12045031 45 1.52e-05 CTCGTCATCA GTTGCTAG GTTACGGCTT chr3:132843518-132843598 7 1.52e-05 CTAGTA GTTGCTAG GCAAGTTAAA chr17:2193307-2193387 36 1.52e-05 cacatcatta gttgctag gagaatccaa chr4:57257592-57257672 27 1.52e-05 tagataggca gttgctag gcagatgtcg chrX:16623267-16623347 33 1.52e-05 aattttggtg gttgctag gtagaaaatg chr22:44576712-44576792 48 1.52e-05 CCAGTCACCT GTTGCTAG GGAAACTCAC chr14:94575808-94575888 41 1.52e-05 agtgtcagta gttgctag gtaggactgg chr8:80813238-80813318 65 1.52e-05 aatgtcagta gttgctag gtaggatt chr18:7830603-7830683 43 1.52e-05 ATATGTCATA GTTGCTAG GAGGAGATAT chr20:30483050-30483130 42 1.52e-05 agtgtcagta gttgctag gtaggacttg chr5:149790270-149790350 38 2.94e-05 TGACACAGAT GTTGCCAG GCAGAAGCAT chr17:6735035-6735115 55 2.94e-05 CAAGTGACGC GTTGCCAG GGCAAAGAGG chr1:27917568-27917648 43 2.94e-05 TCCATCAGCT GTTGCCAG GGAGTTTCCA chr12:14561291-14561371 17 2.94e-05 TTTTTAGGCT GTTGCCAG GCAGATTTAA chr4:77795501-77795581 13 2.94e-05 AACTTTCCCT GTTGCCAG GATCCAGCTT chr14:102630859-10263093 57 2.94e-05 tcaacttcat gttgccag atccattgga chr21:39235095-39235175 51 2.94e-05 GACATCATTT GTTGCCAG GAGGAAAAAG chr12:117818078-11781815 43 4.37e-05 ctaatatact gttgctgg gtgaaggaag chr1:150534683-150534763 38 4.37e-05 GCTCAGGGCT GTTGCTGG GCAGGTTTGG chr19:39752532-39752612 60 4.37e-05 ctacctaaca gttgctgg ggagaaaaaa chr11:72510662-72510742 35 4.37e-05 tagccaggca gttgctgg gcagattccc chr2:228250459-228250539 37 4.37e-05 TGACAAGGTT GTTGCTGG GGAAGTGTCA chr12:14569692-14569772 8 4.37e-05 TTCCCTT GTTGCTGG GCAAGGTTTG chr19:3857757-3857837 41 4.37e-05 GGAGTCACCT GTTGCTGG AAGGAACTGT chr6:69345789-69345869 37 4.37e-05 CTCCGTCACT GTTGCTGG GACGCGTGCC chr12:14570774-14570854 27 4.37e-05 TCTGTCTCCT GTTGCTGG GCAGGAATCA chr6:32977418-32977498 46 4.37e-05 GAATGTATCT GTTGCTGG GTAAAGAGGG chr6:33041463-33041543 57 4.37e-05 GACATTCTCT GTTGCTGG GTAAAGAGGA chr8:86858683-86858763 42 4.37e-05 tggataagca gttgctgg gcagatgtct chr19:36822656-36822736 44 5.99e-05 GTGATCAGAT GTTACTAG GCAGACAGTC chr19:42570332-42570412 40 5.99e-05 GCAGGCAGCC GTTACTAG GCAACAGAAA chr7:140683748-140683828 9 5.99e-05 GGTAAATT GTTACTAG GCAAAGAAAC chr6:32908844-32908924 44 5.99e-05 AGCATCATCA GTTACTAG GTAAACGTCA chr15:56541408-56541488 21 5.99e-05 ggaactttgt gttACTAG GCAGAAAGTT chr6:29691073-29691153 68 9.04e-05 TGGGCGTCGC GTTTCTAG AGAAG chr7:22911868-22911948 63 9.04e-05 ATTTGTCACT GTTTCTAG GCACATTTGC chr10:46168276-46168356 62 1.04e-04 GACGTGGGCG GTTGCCGG GGCGCCAGGG chr1:51887785-51887865 40 1.35e-04 TGATGTCACT GTTGCTAT GGAAATAGTG chr19:18215329-18215409 43 1.35e-04 GGCGTCACTG GTTGCTAT GGCGAACACC chr15:43738722-43738802 33 1.35e-04 GACATCACTG GTTGCTAT GGTGCTTTCT chr6:134373787-134373867 25 1.35e-04 GACACAGGCT GTTGCTAT TCCAAGCAGC chr7:93144616-93144696 36 1.35e-04 GGCATCATCA GTTGCTAT CTCCCTGACT chr19:50703420-50703500 69 1.35e-04 GACATCACCA GTTACCAG GCAG chr1:204174768-204174848 50 1.35e-04 TCCATCATCT GTTGCTAT GCAGATTTTA chr19:11362068-11362148 42 1.48e-04 tttGTTCACT GTCGCCAG GGAAGGAGAG chr9:118982181-118982261 70 1.48e-04 GCCCAATCAA GTCGCCAG AAT chr21:15227089-15227169 70 1.63e-04 ACCCCTCGCT GTTtccag gcg chr1:12626198-12626278 54 1.63e-04 tgacagtgtt gtttccag gtggaaactt chr6:43137552-43137632 22 1.63e-04 cttgtcactt gtttccag gcacagggct chr14:93640452-93640532 44 1.63e-04 tggatcactt gtttccag gggaaatcag chr10:112631576-11263165 65 1.78e-04 TCGCCCCCGT GTTACTGG GTAGAAGA chr4:166319846-166319926 11 2.07e-04 TGAAGTAGGT GTTGCCAT GGTGACAGAA chr4:79566003-79566083 35 2.07e-04 CCTCATCACT GTTGCCAT GCAGGTCTGC chr12:117518716-11751879 50 2.07e-04 TGAGGTCACA GTTGCCAT GCGGATGATG chr2:170687997-170688077 34 2.07e-04 TGTGTCAGCA GTTGCCAT GTCCAGTTTC chr10:72147417-72147497 34 2.07e-04 agcgtcagtt gttgccat accaccttcc chr5:149792497-149792577 52 2.22e-04 CTCATCACTT GTTTCTGG GCAGGCCTTT chr11:34975699-34975779 30 2.54e-04 tctgtcagta gtcactag gtagctttca chr17:42728761-42728841 39 2.54e-04 aacatcatta gtcactag ggaaatgtaa chr16:53910859-53910939 46 2.54e-04 aacgtcatta gtcactag ggaaatacaa chr8:130926244-130926324 47 2.54e-04 tttaaagtga gtcactag tcactgcata chr19:10565109-10565189 18 3.14e-04 TGGAGGGGGA GTTGCTAA GGAGACTCCC chr20:47349923-47350003 63 3.58e-04 gatttttgct gttactat ggggaaaggg chr17:5765354-5765434 36 4.03e-04 TGACTCACCA GTCACCAG GTGCCAGGGG chr22:29518145-29518225 69 4.03e-04 agcatcacca gttgtcag ggaa chr20:34562318-34562398 42 4.03e-04 AGAGTCACTT GTTGTCAG GGGAATGTGA chr5:133927122-133927202 30 4.03e-04 TGACTCATCT GTCACCAG GTGAGTGTGC chr10:81127642-81127722 37 4.03e-04 aacctcatta gtcaccag ggaaacacaa chr4:4341272-4341352 61 4.03e-04 agccagagtt gttgtcag tgctttggtg chr1:30788504-30788584 39 4.03e-04 GACATCAGCA GTCACCAG GCAGAACAGC chrX:129350479-129350559 40 4.03e-04 cacgtcatta gtcaccag ggaaatgcaa chr12:6873545-6873625 49 4.20e-04 TGGCAACAGG GTTTCTAT TGGCTATCAG chrX:40791347-40791427 45 4.63e-04 AGAGTCATCT GTCTCCAG TAGTTGGAGC chr6:32577728-32577808 42 4.63e-04 AGCATCACTT GTCTCCAG CAGATACATC chr14:100208583-10020866 30 4.63e-04 GACGTCAGTG GTTGCCAA GGCTGGAGGC chr19:38586445-38586525 30 4.63e-04 TAAGTCACCC GTCTCCAG GGAGGAAGAA chr7:65398079-65398159 20 5.24e-04 tgtgtcggct gttgttgg gcagaatatt chr11:69453836-69453916 10 5.24e-04 ATCAACGAA GTTCCTAG TCGAGATCTG chr6:32920940-32921020 42 5.24e-04 AACATCATCA GTCACTGG GGAGACGCCT chr3:100375952-100376032 30 5.24e-04 TACGGTGTTA GTTGTTGG GGAAGATACG chr1:164672844-164672924 52 5.24e-04 TACCGCTTCC GTCACTGG CTGTTAATCA chrX:106809652-106809732 48 5.24e-04 CTCCTCAGAT GTTGTTGG GTAAAAAGCC chr10:31074324-31074404 41 5.38e-04 TGCGTCATTT GTCGCCAT CCTAGCAACT chr1:46049211-46049291 11 6.01e-04 TGCGTCAGTT GTTGCTGA GGCCTAGATC chr1:207998104-207998184 44 6.01e-04 AGAGATTTGG GTTGCTGA GTCATTTGTT chr3:193577190-193577270 40 6.01e-04 TGCATAGGTT GTTTCCAT GCACTTCTTG chr6:32634514-32634594 36 6.01e-04 GACCTCATCT GTCTCTGG GCAGACATTT chr6:32658157-32658237 49 6.01e-04 AGAGTCACTT GTCTCTGG CAGTCCAAGC chr6:32595828-32595908 51 6.01e-04 AGCATCATCT GTCTCTGG CAGACTAAGC chr6:32405369-32405449 57 6.01e-04 AGTGTCATAA GTTGCTGA GCAACAACTT chr5:134327983-134328063 63 6.17e-04 gacatcacta gtcgttag ggaaatgcaa chr6:29520487-29520567 29 6.68e-04 ggaagtccta gttactaa ttacgttttt chr6:30227236-30227316 61 6.68e-04 TGGGTGCCGG GTTTTTAG AGAAGCCAAT chr1:156877358-156877438 58 7.38e-04 GACGTGTCCT GTTCCCAG GGCACTTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:99445673-99445753 1.5e-05 51_[+2]_21 chr16:16002088-16002168 1.5e-05 67_[+2]_5 chr19:41283475-41283555 1.5e-05 38_[+2]_34 chr4:184793797-184793877 1.5e-05 31_[+2]_41 chr10:64134935-64135015 1.5e-05 21_[+2]_51 chr12:120450232-12045031 1.5e-05 44_[+2]_28 chr3:132843518-132843598 1.5e-05 6_[+2]_66 chr17:2193307-2193387 1.5e-05 35_[+2]_37 chr4:57257592-57257672 1.5e-05 26_[+2]_46 chrX:16623267-16623347 1.5e-05 32_[+2]_40 chr22:44576712-44576792 1.5e-05 47_[+2]_25 chr14:94575808-94575888 1.5e-05 40_[+2]_32 chr8:80813238-80813318 1.5e-05 64_[+2]_8 chr18:7830603-7830683 1.5e-05 42_[+2]_30 chr20:30483050-30483130 1.5e-05 41_[+2]_31 chr5:149790270-149790350 2.9e-05 37_[+2]_35 chr17:6735035-6735115 2.9e-05 54_[+2]_18 chr1:27917568-27917648 2.9e-05 42_[+2]_30 chr12:14561291-14561371 2.9e-05 16_[+2]_56 chr4:77795501-77795581 2.9e-05 12_[+2]_60 chr14:102630859-10263093 2.9e-05 56_[+2]_16 chr21:39235095-39235175 2.9e-05 50_[+2]_22 chr12:117818078-11781815 4.4e-05 42_[+2]_30 chr1:150534683-150534763 4.4e-05 37_[+2]_35 chr19:39752532-39752612 4.4e-05 59_[+2]_13 chr11:72510662-72510742 4.4e-05 34_[+2]_38 chr2:228250459-228250539 4.4e-05 36_[+2]_36 chr12:14569692-14569772 4.4e-05 7_[+2]_65 chr19:3857757-3857837 4.4e-05 40_[+2]_32 chr6:69345789-69345869 4.4e-05 36_[+2]_36 chr12:14570774-14570854 4.4e-05 26_[+2]_46 chr6:32977418-32977498 4.4e-05 45_[+2]_27 chr6:33041463-33041543 4.4e-05 56_[+2]_16 chr8:86858683-86858763 4.4e-05 41_[+2]_31 chr19:36822656-36822736 6e-05 43_[+2]_29 chr19:42570332-42570412 6e-05 39_[+2]_33 chr7:140683748-140683828 6e-05 8_[+2]_64 chr6:32908844-32908924 6e-05 43_[+2]_29 chr15:56541408-56541488 6e-05 20_[+2]_52 chr6:29691073-29691153 9e-05 67_[+2]_5 chr7:22911868-22911948 9e-05 62_[+2]_10 chr10:46168276-46168356 0.0001 61_[+2]_11 chr1:51887785-51887865 0.00014 39_[+2]_33 chr19:18215329-18215409 0.00014 42_[+2]_30 chr15:43738722-43738802 0.00014 32_[+2]_40 chr6:134373787-134373867 0.00014 24_[+2]_48 chr7:93144616-93144696 0.00014 35_[+2]_37 chr19:50703420-50703500 0.00014 68_[+2]_4 chr1:204174768-204174848 0.00014 49_[+2]_23 chr19:11362068-11362148 0.00015 41_[+2]_31 chr9:118982181-118982261 0.00015 69_[+2]_3 chr21:15227089-15227169 0.00016 69_[+2]_3 chr1:12626198-12626278 0.00016 53_[+2]_19 chr6:43137552-43137632 0.00016 21_[+2]_51 chr14:93640452-93640532 0.00016 43_[+2]_29 chr10:112631576-11263165 0.00018 64_[+2]_8 chr4:166319846-166319926 0.00021 10_[+2]_62 chr4:79566003-79566083 0.00021 34_[+2]_38 chr12:117518716-11751879 0.00021 49_[+2]_23 chr2:170687997-170688077 0.00021 33_[+2]_39 chr10:72147417-72147497 0.00021 33_[+2]_39 chr5:149792497-149792577 0.00022 51_[+2]_21 chr11:34975699-34975779 0.00025 29_[+2]_43 chr17:42728761-42728841 0.00025 38_[+2]_34 chr16:53910859-53910939 0.00025 45_[+2]_27 chr8:130926244-130926324 0.00025 46_[+2]_26 chr19:10565109-10565189 0.00031 17_[+2]_55 chr20:47349923-47350003 0.00036 62_[+2]_10 chr17:5765354-5765434 0.0004 35_[+2]_37 chr22:29518145-29518225 0.0004 68_[+2]_4 chr20:34562318-34562398 0.0004 41_[+2]_31 chr5:133927122-133927202 0.0004 29_[+2]_43 chr10:81127642-81127722 0.0004 36_[+2]_36 chr4:4341272-4341352 0.0004 60_[+2]_12 chr1:30788504-30788584 0.0004 38_[+2]_34 chrX:129350479-129350559 0.0004 39_[+2]_33 chr12:6873545-6873625 0.00042 48_[+2]_24 chrX:40791347-40791427 0.00046 44_[+2]_28 chr6:32577728-32577808 0.00046 41_[+2]_31 chr14:100208583-10020866 0.00046 29_[+2]_43 chr19:38586445-38586525 0.00046 29_[+2]_43 chr7:65398079-65398159 0.00052 19_[+2]_53 chr11:69453836-69453916 0.00052 9_[+2]_63 chr6:32920940-32921020 0.00052 41_[+2]_31 chr3:100375952-100376032 0.00052 29_[+2]_43 chr1:164672844-164672924 0.00052 51_[+2]_21 chrX:106809652-106809732 0.00052 47_[+2]_25 chr10:31074324-31074404 0.00054 40_[+2]_32 chr1:46049211-46049291 0.0006 10_[+2]_62 chr1:207998104-207998184 0.0006 43_[+2]_29 chr3:193577190-193577270 0.0006 39_[+2]_33 chr6:32634514-32634594 0.0006 35_[+2]_37 chr6:32658157-32658237 0.0006 48_[+2]_24 chr6:32595828-32595908 0.0006 50_[+2]_22 chr6:32405369-32405449 0.0006 56_[+2]_16 chr5:134327983-134328063 0.00062 62_[+2]_10 chr6:29520487-29520567 0.00067 28_[+2]_44 chr6:30227236-30227316 0.00067 60_[+2]_12 chr1:156877358-156877438 0.00074 57_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTGCYAG width=8 seqs=99 chr9:99445673-99445753 ( 52) GTTGCTAG 1 chr16:16002088-16002168 ( 68) GTTGCTAG 1 chr19:41283475-41283555 ( 39) GTTGCTAG 1 chr4:184793797-184793877 ( 32) GTTGCTAG 1 chr10:64134935-64135015 ( 22) GTTGCTAG 1 chr12:120450232-12045031 ( 45) GTTGCTAG 1 chr3:132843518-132843598 ( 7) GTTGCTAG 1 chr17:2193307-2193387 ( 36) GTTGCTAG 1 chr4:57257592-57257672 ( 27) GTTGCTAG 1 chrX:16623267-16623347 ( 33) GTTGCTAG 1 chr22:44576712-44576792 ( 48) GTTGCTAG 1 chr14:94575808-94575888 ( 41) GTTGCTAG 1 chr8:80813238-80813318 ( 65) GTTGCTAG 1 chr18:7830603-7830683 ( 43) GTTGCTAG 1 chr20:30483050-30483130 ( 42) GTTGCTAG 1 chr5:149790270-149790350 ( 38) GTTGCCAG 1 chr17:6735035-6735115 ( 55) GTTGCCAG 1 chr1:27917568-27917648 ( 43) GTTGCCAG 1 chr12:14561291-14561371 ( 17) GTTGCCAG 1 chr4:77795501-77795581 ( 13) GTTGCCAG 1 chr14:102630859-10263093 ( 57) GTTGCCAG 1 chr21:39235095-39235175 ( 51) GTTGCCAG 1 chr12:117818078-11781815 ( 43) GTTGCTGG 1 chr1:150534683-150534763 ( 38) GTTGCTGG 1 chr19:39752532-39752612 ( 60) GTTGCTGG 1 chr11:72510662-72510742 ( 35) GTTGCTGG 1 chr2:228250459-228250539 ( 37) GTTGCTGG 1 chr12:14569692-14569772 ( 8) GTTGCTGG 1 chr19:3857757-3857837 ( 41) GTTGCTGG 1 chr6:69345789-69345869 ( 37) GTTGCTGG 1 chr12:14570774-14570854 ( 27) GTTGCTGG 1 chr6:32977418-32977498 ( 46) GTTGCTGG 1 chr6:33041463-33041543 ( 57) GTTGCTGG 1 chr8:86858683-86858763 ( 42) GTTGCTGG 1 chr19:36822656-36822736 ( 44) GTTACTAG 1 chr19:42570332-42570412 ( 40) GTTACTAG 1 chr7:140683748-140683828 ( 9) GTTACTAG 1 chr6:32908844-32908924 ( 44) GTTACTAG 1 chr15:56541408-56541488 ( 21) GTTACTAG 1 chr6:29691073-29691153 ( 68) GTTTCTAG 1 chr7:22911868-22911948 ( 63) GTTTCTAG 1 chr10:46168276-46168356 ( 62) GTTGCCGG 1 chr1:51887785-51887865 ( 40) GTTGCTAT 1 chr19:18215329-18215409 ( 43) GTTGCTAT 1 chr15:43738722-43738802 ( 33) GTTGCTAT 1 chr6:134373787-134373867 ( 25) GTTGCTAT 1 chr7:93144616-93144696 ( 36) GTTGCTAT 1 chr19:50703420-50703500 ( 69) GTTACCAG 1 chr1:204174768-204174848 ( 50) GTTGCTAT 1 chr19:11362068-11362148 ( 42) GTCGCCAG 1 chr9:118982181-118982261 ( 70) GTCGCCAG 1 chr21:15227089-15227169 ( 70) GTTTCCAG 1 chr1:12626198-12626278 ( 54) GTTTCCAG 1 chr6:43137552-43137632 ( 22) GTTTCCAG 1 chr14:93640452-93640532 ( 44) GTTTCCAG 1 chr10:112631576-11263165 ( 65) GTTACTGG 1 chr4:166319846-166319926 ( 11) GTTGCCAT 1 chr4:79566003-79566083 ( 35) GTTGCCAT 1 chr12:117518716-11751879 ( 50) GTTGCCAT 1 chr2:170687997-170688077 ( 34) GTTGCCAT 1 chr10:72147417-72147497 ( 34) GTTGCCAT 1 chr5:149792497-149792577 ( 52) GTTTCTGG 1 chr11:34975699-34975779 ( 30) GTCACTAG 1 chr17:42728761-42728841 ( 39) GTCACTAG 1 chr16:53910859-53910939 ( 46) GTCACTAG 1 chr8:130926244-130926324 ( 47) GTCACTAG 1 chr19:10565109-10565189 ( 18) GTTGCTAA 1 chr20:47349923-47350003 ( 63) GTTACTAT 1 chr17:5765354-5765434 ( 36) GTCACCAG 1 chr22:29518145-29518225 ( 69) GTTGTCAG 1 chr20:34562318-34562398 ( 42) GTTGTCAG 1 chr5:133927122-133927202 ( 30) GTCACCAG 1 chr10:81127642-81127722 ( 37) GTCACCAG 1 chr4:4341272-4341352 ( 61) GTTGTCAG 1 chr1:30788504-30788584 ( 39) GTCACCAG 1 chrX:129350479-129350559 ( 40) GTCACCAG 1 chr12:6873545-6873625 ( 49) GTTTCTAT 1 chrX:40791347-40791427 ( 45) GTCTCCAG 1 chr6:32577728-32577808 ( 42) GTCTCCAG 1 chr14:100208583-10020866 ( 30) GTTGCCAA 1 chr19:38586445-38586525 ( 30) GTCTCCAG 1 chr7:65398079-65398159 ( 20) GTTGTTGG 1 chr11:69453836-69453916 ( 10) GTTCCTAG 1 chr6:32920940-32921020 ( 42) GTCACTGG 1 chr3:100375952-100376032 ( 30) GTTGTTGG 1 chr1:164672844-164672924 ( 52) GTCACTGG 1 chrX:106809652-106809732 ( 48) GTTGTTGG 1 chr10:31074324-31074404 ( 41) GTCGCCAT 1 chr1:46049211-46049291 ( 11) GTTGCTGA 1 chr1:207998104-207998184 ( 44) GTTGCTGA 1 chr3:193577190-193577270 ( 40) GTTTCCAT 1 chr6:32634514-32634594 ( 36) GTCTCTGG 1 chr6:32658157-32658237 ( 49) GTCTCTGG 1 chr6:32595828-32595908 ( 51) GTCTCTGG 1 chr6:32405369-32405449 ( 57) GTTGCTGA 1 chr5:134327983-134328063 ( 63) GTCGTTAG 1 chr6:29520487-29520567 ( 29) GTTACTAA 1 chr6:30227236-30227316 ( 61) GTTTTTAG 1 chr1:156877358-156877438 ( 58) GTTCCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.00024 E= 9.4e-043 -1327 -1327 205 -1327 -1327 -1327 -1327 195 -1327 -18 -1327 160 -36 -357 135 -68 -1327 194 -1327 -168 -1327 56 -1327 132 151 -1327 12 -1327 -209 -1327 170 -78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 9.4e-043 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.212121 0.000000 0.787879 0.202020 0.020202 0.616162 0.161616 0.000000 0.919192 0.000000 0.080808 0.000000 0.353535 0.000000 0.646465 0.737374 0.000000 0.262626 0.000000 0.060606 0.000000 0.787879 0.151515 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAG MEME-2 regular expression -------------------------------------------------------------------------------- GT[TC][GA]C[TC][AG]G -------------------------------------------------------------------------------- Time 8.58 secs. ******************************************************************************** ******************************************************************************** MOTIF SATTGGCT MEME-3 width = 8 sites = 66 llr = 540 E-value = 7.7e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif SATTGGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::::1: pos.-specific C 3:::::62 probability G 5:::aa1: matrix T 2:aa::27 bits 2.1 ** 1.9 ***** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ***** * (11.8 bits) 0.8 ***** * 0.6 ***** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GATTGGCT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATTGGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:45430453-45430533 71 1.52e-05 ACACCTCTGG GATTGGCT GT chr17:5765354-5765434 2 1.52e-05 G GATTGGCT CCCCCTGTGT chr12:6873545-6873625 10 1.52e-05 AGGCTTCTG GATTGGCT GATTCAAATG chr11:72433599-72433679 68 1.52e-05 GAAGACCAGG GATTGGCT GGACT chr19:50934978-50935058 65 1.52e-05 ACTGACGCCG GATTGGCT GGACGCTC chr1:203296554-203296634 45 1.52e-05 ACAAGCCGCT GATTGGCT GGCTCGGGGG chr10:102241404-10224148 65 1.52e-05 CTGAGCAGGG GATTGGCT GAACCTGG chr6:30181248-30181328 3 1.52e-05 GG GATTGGCT CCTGCCGAAC chr7:150871985-150872065 60 1.52e-05 CGGTGCACTT GATTGGCT GCTCTGTCCC chr6:31239916-31239996 4 1.52e-05 GCT GATTGGCT TCTCTAGAAC chr11:62323744-62323824 48 1.52e-05 CGCAGGCTCT GATTGGCT GCCCACAGCA chr1:159158367-159158447 60 1.52e-05 TTGCGCACTT GATTGGCT ACTTCGGGGC chr12:14570774-14570854 59 1.52e-05 GCTGGCTGCT GATTGGCT GAGTTTGTGA chr11:10336386-10336466 57 1.52e-05 tggcttctgt gattggct gagacttggc chr1:175099444-175099524 58 1.52e-05 GCAGTAATTG GATTGGCT GGGGGAAATT chr4:166319846-166319926 54 3.04e-05 AGACAGATTT CATTGGCT GGCTGTCTGC chr11:69453836-69453916 59 3.04e-05 GCCGCGCCCC CATTGGCT CATGCTAATT chr19:41098192-41098272 64 3.04e-05 gactgatttt cattggct tgaattaag chr5:149789471-149789551 65 3.04e-05 GGCTCATTCT CATTGGCT TGCTGCGT chr7:70390496-70390576 57 3.04e-05 cttatttccc cattggct agagctgtag chr19:49163200-49163280 7 3.04e-05 ACTCCC CATTGGCT GAGAGGCCCA chr5:149792497-149792577 24 3.04e-05 AGCACGATCC CATTGGCT GCCCAGGGCC chr16:67196472-67196552 47 3.04e-05 CCTAAAATAT CATTGGCT CTCCATGTCC chr22:25534263-25534343 50 3.04e-05 gcttgcattt cattggct agggcaagtc chr4:77795501-77795581 60 3.04e-05 TTGAGGTTCC CATTGGCT GGGACTAACC chr19:55840447-55840527 58 3.04e-05 tccatgcatt cattggct atttgcatat chr10:112631576-11263165 9 4.45e-05 GCCGCCAC GATTGGCC AGCCGACCAC chr19:47854926-47855006 55 4.45e-05 aaagggccct gattggcc cttcttggat chr6:32407519-32407599 73 4.45e-05 ATATTTTTCT GATTGGCC chr2:218298937-218299017 49 4.45e-05 ACAGAGCTCT GATTGGCC AGACCTGTGC chr19:10565109-10565189 68 6.08e-05 CCTGCTTCCC TATTGGCT CCCTG chr12:4381215-4381295 56 6.08e-05 GCCCCAGAGC TATTGGCT ATGCAAATAG chr5:158671332-158671412 73 6.08e-05 tttacgtgct tattggct chr17:59647735-59647815 71 6.08e-05 ttcatgtgct tattggct ac chr19:47082702-47082782 25 7.73e-05 CTGCAATTCT GATTGGTT TTCTTCCTGA chr6:29520487-29520567 60 7.73e-05 ggctgcttct gattggtt gagcttaagt chr12:14569692-14569772 40 7.73e-05 ACTGATGTCT GATTGGTT TTAGACTATT chr12:14561291-14561371 73 7.73e-05 CTATCTTCCT GATTGGTT chr1:160323207-160323287 12 1.08e-04 AGTGACATTC CATTGGTT CCCTGGACTG chr4:4341272-4341352 32 1.08e-04 aaacagagtt cattggtt cccgaggtcg chr6:33080087-33080167 54 1.08e-04 GCTCAGTGCC CATTGGTT CTTTTCTCAG chr6:33043613-33043693 54 1.08e-04 GCTCAGTGTC CATTGGTT CTTTTCTCAG chr19:51109665-51109745 40 1.24e-04 TGTCCTACCT GATTGGAT GCCTGCTGCA chr19:6536225-6536305 59 1.39e-04 cgtcccagct gattgggt caggttggac chr9:92104985-92105065 68 1.54e-04 ctcgcatgtt tattggcc gtttg chr11:3936209-3936289 62 1.54e-04 ctcatgtgct tattggcc atttgtatgt chr5:70829646-70829726 51 1.54e-04 tttatgttcc tattggcc atttgtatat chr2:183507204-183507284 62 1.86e-04 gcagcgctct gattggtc aggcctggAG chr17:6265182-6265262 59 1.86e-04 ggagaaatct gattggtc ctgcctgagt chr15:78128878-78128958 41 1.86e-04 GACCAAATAT GATTGGTC ACTTCTCTCT chr8:19607932-19608012 67 2.04e-04 CGGACActgc tattggtt ggtacc chr6:31430811-31430891 68 2.19e-04 TTCTCACTTC CATTGGGT GTTGG chr6:30227236-30227316 48 2.19e-04 TTCTCACTCC CATTGGGT GCCGGGTTTT chr17:9720573-9720653 68 2.34e-04 AGCTCCCTCC CATTGGTC TAATT chr15:52944252-52944332 43 2.49e-04 ACTCACAGCT GATTGGAC AGAGGGTGTG chr1:7764654-7764734 35 2.49e-04 CGCATCCTCC GATTGGAC CACGCGGCCT chr5:57021607-57021687 12 2.67e-04 GCTAGAAGGA TATTGGAT TGCCGTGCAT chr6:32997341-32997421 60 2.67e-04 ACCCACTTTT TATTGGAT AGAGAGAAAT chr19:49285850-49285930 60 2.97e-04 CAGTCATTCC TATTGGGT GCTCTTAGTG chr10:11680232-11680312 58 3.12e-04 caaccaatca cattggac agtgggtgtt chr14:102630859-10263093 68 3.12e-04 ttgccagatc cattggac accgc chr9:137341588-137341668 54 3.43e-04 GGCCCCTGCT GACTGGCT AAGCTCTGAT chr21:39235095-39235175 72 3.43e-04 GAAAAAGCAG GACTGGCT C chr6:29691073-29691153 55 3.57e-04 TTCTCACTCC CATTGGGC GTCGCGTTTC chr19:18215329-18215409 13 3.73e-04 GGCCCCCTCC AATTGGCT GTAGGGGCCG chrX:53111322-53111402 13 4.02e-04 TCAGCCCGTT GATTGGCG GGCCCGAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATTGGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:45430453-45430533 1.5e-05 70_[+3]_2 chr17:5765354-5765434 1.5e-05 1_[+3]_71 chr12:6873545-6873625 1.5e-05 9_[+3]_63 chr11:72433599-72433679 1.5e-05 67_[+3]_5 chr19:50934978-50935058 1.5e-05 64_[+3]_8 chr1:203296554-203296634 1.5e-05 44_[+3]_28 chr10:102241404-10224148 1.5e-05 64_[+3]_8 chr6:30181248-30181328 1.5e-05 2_[+3]_70 chr7:150871985-150872065 1.5e-05 59_[+3]_13 chr6:31239916-31239996 1.5e-05 3_[+3]_69 chr11:62323744-62323824 1.5e-05 47_[+3]_25 chr1:159158367-159158447 1.5e-05 59_[+3]_13 chr12:14570774-14570854 1.5e-05 58_[+3]_14 chr11:10336386-10336466 1.5e-05 56_[+3]_16 chr1:175099444-175099524 1.5e-05 57_[+3]_15 chr4:166319846-166319926 3e-05 53_[+3]_19 chr11:69453836-69453916 3e-05 58_[+3]_14 chr19:41098192-41098272 3e-05 63_[+3]_9 chr5:149789471-149789551 3e-05 64_[+3]_8 chr7:70390496-70390576 3e-05 56_[+3]_16 chr19:49163200-49163280 3e-05 6_[+3]_66 chr5:149792497-149792577 3e-05 23_[+3]_49 chr16:67196472-67196552 3e-05 46_[+3]_26 chr22:25534263-25534343 3e-05 49_[+3]_23 chr4:77795501-77795581 3e-05 59_[+3]_13 chr19:55840447-55840527 3e-05 57_[+3]_15 chr10:112631576-11263165 4.4e-05 8_[+3]_64 chr19:47854926-47855006 4.4e-05 54_[+3]_18 chr6:32407519-32407599 4.4e-05 72_[+3] chr2:218298937-218299017 4.4e-05 48_[+3]_24 chr19:10565109-10565189 6.1e-05 67_[+3]_5 chr12:4381215-4381295 6.1e-05 55_[+3]_17 chr5:158671332-158671412 6.1e-05 72_[+3] chr17:59647735-59647815 6.1e-05 70_[+3]_2 chr19:47082702-47082782 7.7e-05 24_[+3]_48 chr6:29520487-29520567 7.7e-05 59_[+3]_13 chr12:14569692-14569772 7.7e-05 39_[+3]_33 chr12:14561291-14561371 7.7e-05 72_[+3] chr1:160323207-160323287 0.00011 11_[+3]_61 chr4:4341272-4341352 0.00011 31_[+3]_41 chr6:33080087-33080167 0.00011 53_[+3]_19 chr6:33043613-33043693 0.00011 53_[+3]_19 chr19:51109665-51109745 0.00012 39_[+3]_33 chr19:6536225-6536305 0.00014 58_[+3]_14 chr9:92104985-92105065 0.00015 67_[+3]_5 chr11:3936209-3936289 0.00015 61_[+3]_11 chr5:70829646-70829726 0.00015 50_[+3]_22 chr2:183507204-183507284 0.00019 61_[+3]_11 chr17:6265182-6265262 0.00019 58_[+3]_14 chr15:78128878-78128958 0.00019 40_[+3]_32 chr8:19607932-19608012 0.0002 66_[+3]_6 chr6:31430811-31430891 0.00022 67_[+3]_5 chr6:30227236-30227316 0.00022 47_[+3]_25 chr17:9720573-9720653 0.00023 67_[+3]_5 chr15:52944252-52944332 0.00025 42_[+3]_30 chr1:7764654-7764734 0.00025 34_[+3]_38 chr5:57021607-57021687 0.00027 11_[+3]_61 chr6:32997341-32997421 0.00027 59_[+3]_13 chr19:49285850-49285930 0.0003 59_[+3]_13 chr10:11680232-11680312 0.00031 57_[+3]_15 chr14:102630859-10263093 0.00031 67_[+3]_5 chr9:137341588-137341668 0.00034 53_[+3]_19 chr21:39235095-39235175 0.00034 71_[+3]_1 chr6:29691073-29691153 0.00036 54_[+3]_18 chr19:18215329-18215409 0.00037 12_[+3]_60 chrX:53111322-53111402 0.0004 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATTGGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SATTGGCT width=8 seqs=66 chr19:45430453-45430533 ( 71) GATTGGCT 1 chr17:5765354-5765434 ( 2) GATTGGCT 1 chr12:6873545-6873625 ( 10) GATTGGCT 1 chr11:72433599-72433679 ( 68) GATTGGCT 1 chr19:50934978-50935058 ( 65) GATTGGCT 1 chr1:203296554-203296634 ( 45) GATTGGCT 1 chr10:102241404-10224148 ( 65) GATTGGCT 1 chr6:30181248-30181328 ( 3) GATTGGCT 1 chr7:150871985-150872065 ( 60) GATTGGCT 1 chr6:31239916-31239996 ( 4) GATTGGCT 1 chr11:62323744-62323824 ( 48) GATTGGCT 1 chr1:159158367-159158447 ( 60) GATTGGCT 1 chr12:14570774-14570854 ( 59) GATTGGCT 1 chr11:10336386-10336466 ( 57) GATTGGCT 1 chr1:175099444-175099524 ( 58) GATTGGCT 1 chr4:166319846-166319926 ( 54) CATTGGCT 1 chr11:69453836-69453916 ( 59) CATTGGCT 1 chr19:41098192-41098272 ( 64) CATTGGCT 1 chr5:149789471-149789551 ( 65) CATTGGCT 1 chr7:70390496-70390576 ( 57) CATTGGCT 1 chr19:49163200-49163280 ( 7) CATTGGCT 1 chr5:149792497-149792577 ( 24) CATTGGCT 1 chr16:67196472-67196552 ( 47) CATTGGCT 1 chr22:25534263-25534343 ( 50) CATTGGCT 1 chr4:77795501-77795581 ( 60) CATTGGCT 1 chr19:55840447-55840527 ( 58) CATTGGCT 1 chr10:112631576-11263165 ( 9) GATTGGCC 1 chr19:47854926-47855006 ( 55) GATTGGCC 1 chr6:32407519-32407599 ( 73) GATTGGCC 1 chr2:218298937-218299017 ( 49) GATTGGCC 1 chr19:10565109-10565189 ( 68) TATTGGCT 1 chr12:4381215-4381295 ( 56) TATTGGCT 1 chr5:158671332-158671412 ( 73) TATTGGCT 1 chr17:59647735-59647815 ( 71) TATTGGCT 1 chr19:47082702-47082782 ( 25) GATTGGTT 1 chr6:29520487-29520567 ( 60) GATTGGTT 1 chr12:14569692-14569772 ( 40) GATTGGTT 1 chr12:14561291-14561371 ( 73) GATTGGTT 1 chr1:160323207-160323287 ( 12) CATTGGTT 1 chr4:4341272-4341352 ( 32) CATTGGTT 1 chr6:33080087-33080167 ( 54) CATTGGTT 1 chr6:33043613-33043693 ( 54) CATTGGTT 1 chr19:51109665-51109745 ( 40) GATTGGAT 1 chr19:6536225-6536305 ( 59) GATTGGGT 1 chr9:92104985-92105065 ( 68) TATTGGCC 1 chr11:3936209-3936289 ( 62) TATTGGCC 1 chr5:70829646-70829726 ( 51) TATTGGCC 1 chr2:183507204-183507284 ( 62) GATTGGTC 1 chr17:6265182-6265262 ( 59) GATTGGTC 1 chr15:78128878-78128958 ( 41) GATTGGTC 1 chr8:19607932-19608012 ( 67) TATTGGTT 1 chr6:31430811-31430891 ( 68) CATTGGGT 1 chr6:30227236-30227316 ( 48) CATTGGGT 1 chr17:9720573-9720653 ( 68) CATTGGTC 1 chr15:52944252-52944332 ( 43) GATTGGAC 1 chr1:7764654-7764734 ( 35) GATTGGAC 1 chr5:57021607-57021687 ( 12) TATTGGAT 1 chr6:32997341-32997421 ( 60) TATTGGAT 1 chr19:49285850-49285930 ( 60) TATTGGGT 1 chr10:11680232-11680312 ( 58) CATTGGAC 1 chr14:102630859-10263093 ( 68) CATTGGAC 1 chr9:137341588-137341668 ( 54) GACTGGCT 1 chr21:39235095-39235175 ( 72) GACTGGCT 1 chr6:29691073-29691153 ( 55) CATTGGGC 1 chr19:18215329-18215409 ( 13) AATTGGCT 1 chrX:53111322-53111402 ( 13) GATTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATTGGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.87455 E= 7.7e-032 -409 40 105 -64 195 -1269 -1269 -1269 -1269 -299 -1269 190 -1269 -1269 -1269 195 -1269 -1269 205 -1269 -1269 -1269 205 -1269 -128 137 -167 -40 -1269 1 -399 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATTGGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 7.7e-032 0.015152 0.318182 0.500000 0.166667 1.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.969697 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.106061 0.621212 0.075758 0.196970 0.000000 0.242424 0.015152 0.742424 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SATTGGCT MEME-3 regular expression -------------------------------------------------------------------------------- [GC]ATTGGC[TC] -------------------------------------------------------------------------------- Time 12.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAATSAG MEME-4 width = 8 sites = 54 llr = 463 E-value = 1.7e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAATSAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a9:282 pos.-specific C aa:::5:: probability G :::1:327 matrix T ::::a::: bits 2.1 ** 1.9 *** * 1.6 ***** 1.4 ***** Relative 1.2 ***** * Entropy 1.0 ***** ** (12.4 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAATCAG consensus GGA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:103348865-10334894 62 1.49e-05 CAGGCAGGGG CCAATCAG GGAAGCCTGG chr12:117818078-11781815 10 1.49e-05 caagcaggg ccaatcag gcctcttccc chr10:46168276-46168356 17 1.49e-05 TCGCTGCCCT CCAATCAG CGCGGGCGGG chr7:100401299-100401379 10 1.49e-05 GATTGTAAG CCAATCAG AAAAGCCAGC chr11:69492665-69492745 28 1.49e-05 caacagctgg ccaatcag gaaaagcaga chr1:229483468-229483548 10 1.49e-05 tgggcttgg ccaatcag atcatcttat chr6:32920940-32921020 9 1.49e-05 TGTCTAAA CCAATCAG AGAAGCGTAG chr6:32557614-32557694 53 1.49e-05 TGTTGGAGAA CCAATCAG CATCTGAGTT chr12:14569692-14569772 69 1.49e-05 CGGCTTTGAG CCAATCAG ACAG chrX:39060773-39060853 55 1.49e-05 GAGAGAAGCA CCAATCAG CCTGCTTCTT chr6:32634514-32634594 4 1.49e-05 GAA CCAATCAG CACTGGAGCT chr6:45153269-45153349 50 1.49e-05 ctgtcactca ccaatcag aattcaccag chr11:94987572-94987652 60 1.49e-05 GGGAGAACGA CCAATCAG CAGGCAGAAT chr19:36927629-36927709 53 1.49e-05 atgacacaca ccaatcag aactctccag chr6:32405369-32405449 23 1.49e-05 ACAAGAAGAA CCAATCAG TGTTCTAGGA chr18:7830603-7830683 10 1.49e-05 TGAGTTCAT CCAATCAG AGTGAATAAT chr16:16002088-16002168 2 2.99e-05 g ccaatgag gctcaaaccc chr6:32658157-32658237 15 2.99e-05 ATCTCTCCAA CCAATGAG AAGCATATGA chr10:112631576-11263165 37 4.59e-05 CCGGCCTCGG CCAATAAG CGCCGCCCTC chr17:42728761-42728841 4 4.59e-05 ata ccaataag cacatgaaaa chr10:81127642-81127722 2 4.59e-05 g ccaataag cacatgagaa chr2:100088238-100088318 10 4.59e-05 gacaaatgg ccaataag cacacaaaaa chr5:134327983-134328063 28 4.59e-05 ttacaaatgg ccaataag cacatgaaaa chrX:129350479-129350559 5 4.59e-05 acgg ccaataag cacacaaaga chrX:53111322-53111402 34 7.57e-05 CCGAGGGGAG CCAATCGG AAACTGATGA chr6:26440627-26440707 71 7.57e-05 CACCTCTGAG CCAATCAA AA chr12:54090150-54090230 45 7.57e-05 AACATCACAA CCAATCAA GATGCAATTA chr1:2302822-2302902 20 7.57e-05 aaacaaacag ccaatcaa cacagcgaga chr5:34592041-34592121 25 7.57e-05 ATGAAACTGT CCAATCAA TGATTTCTCA chr2:196916520-196916600 27 7.57e-05 ctgacactca ccaatcaa aactcgccag chr9:118982181-118982261 62 7.57e-05 TCCTTCACGC CCAATCAA GTCGCCAGAA chr6:32784859-32784939 14 7.57e-05 AGATTGACAA CCAATCAA GATAGAAGAG chr1:51887785-51887865 59 1.06e-04 GAAATAGTGT CCAATGAA AATTGCTGGT chr19:36822656-36822736 22 1.06e-04 GAAACGGCGG CCAATGGG AAACGTGATC chr6:30181248-30181328 29 1.06e-04 ACTTCGCCAT CCAATGGG AACCTTAGTC chr19:11362068-11362148 9 1.06e-04 gggctggg ccaatgaa agccttccct chr1:27917568-27917648 63 1.06e-04 AGTTTCCACC CCAATGGG TTCCAAAGGG chr6:31239916-31239996 29 1.06e-04 AACCCGACAC CCAATGGG AGTGGGAATT chr19:47178239-47178319 21 1.06e-04 TCCAATCCAG CCAATGGG CCAGCCCTGC chr21:21760915-21760995 59 1.06e-04 CATCTCTCAC CCAATGGG GACAGATCTG chr7:156347282-156347362 17 1.06e-04 gcacaaatgg ccaatgaa cacatgacaa chr6:29532801-29532881 33 1.06e-04 AAGCTATGCA CCAATGGG AACCAGTTTC chr6:31325008-31325088 25 1.06e-04 TATCCAATAC CCAATGGG AGTGGGAAGT chr6:32577728-32577808 9 1.38e-04 TTCTCCAA CCAATAGG AATAGAGAAT chr22:29518145-29518225 34 1.38e-04 acatagatgg ccaataaa cacatgaaaa chr17:2193307-2193387 50 1.38e-04 ctaggagaat ccaataaa aaaccacaat chr12:29206634-29206714 8 1.38e-04 caaatgg ccaatagg cacatggaaa chr10:31074324-31074404 8 1.67e-04 GCGGGGA CCAGTCAG GCGAGGAGAA chr7:18297525-18297605 14 1.67e-04 TAGAGCCGGG CCAGTCAG TGTCAGTTCA chrX:40791347-40791427 62 2.11e-04 GTAGTTGGAG CCAATCAC CAGGAAGGAG chr3:193577190-193577270 68 2.11e-04 GTCAACCCAG CCAGTGAG ACACT chr6:32977418-32977498 13 2.11e-04 CTGTCTTCAG CCAATCAC AGAAATTCTC chr6:33080087-33080167 20 2.11e-04 AACTTTCTGC CCAGTGAG CAATGACTCA chr16:53910859-53910939 12 2.42e-04 atacaaatgg ccaataga caaatgaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:103348865-10334894 1.5e-05 61_[+4]_11 chr12:117818078-11781815 1.5e-05 9_[+4]_63 chr10:46168276-46168356 1.5e-05 16_[+4]_56 chr7:100401299-100401379 1.5e-05 9_[+4]_63 chr11:69492665-69492745 1.5e-05 27_[+4]_45 chr1:229483468-229483548 1.5e-05 9_[+4]_63 chr6:32920940-32921020 1.5e-05 8_[+4]_64 chr6:32557614-32557694 1.5e-05 52_[+4]_20 chr12:14569692-14569772 1.5e-05 68_[+4]_4 chrX:39060773-39060853 1.5e-05 54_[+4]_18 chr6:32634514-32634594 1.5e-05 3_[+4]_69 chr6:45153269-45153349 1.5e-05 49_[+4]_23 chr11:94987572-94987652 1.5e-05 59_[+4]_13 chr19:36927629-36927709 1.5e-05 52_[+4]_20 chr6:32405369-32405449 1.5e-05 22_[+4]_50 chr18:7830603-7830683 1.5e-05 9_[+4]_63 chr16:16002088-16002168 3e-05 1_[+4]_71 chr6:32658157-32658237 3e-05 14_[+4]_58 chr10:112631576-11263165 4.6e-05 36_[+4]_36 chr17:42728761-42728841 4.6e-05 3_[+4]_69 chr10:81127642-81127722 4.6e-05 1_[+4]_71 chr2:100088238-100088318 4.6e-05 9_[+4]_63 chr5:134327983-134328063 4.6e-05 27_[+4]_45 chrX:129350479-129350559 4.6e-05 4_[+4]_68 chrX:53111322-53111402 7.6e-05 33_[+4]_39 chr6:26440627-26440707 7.6e-05 70_[+4]_2 chr12:54090150-54090230 7.6e-05 44_[+4]_28 chr1:2302822-2302902 7.6e-05 19_[+4]_53 chr5:34592041-34592121 7.6e-05 24_[+4]_48 chr2:196916520-196916600 7.6e-05 26_[+4]_46 chr9:118982181-118982261 7.6e-05 61_[+4]_11 chr6:32784859-32784939 7.6e-05 13_[+4]_59 chr1:51887785-51887865 0.00011 58_[+4]_14 chr19:36822656-36822736 0.00011 21_[+4]_51 chr6:30181248-30181328 0.00011 28_[+4]_44 chr19:11362068-11362148 0.00011 8_[+4]_64 chr1:27917568-27917648 0.00011 62_[+4]_10 chr6:31239916-31239996 0.00011 28_[+4]_44 chr19:47178239-47178319 0.00011 20_[+4]_52 chr21:21760915-21760995 0.00011 58_[+4]_14 chr7:156347282-156347362 0.00011 16_[+4]_56 chr6:29532801-29532881 0.00011 32_[+4]_40 chr6:31325008-31325088 0.00011 24_[+4]_48 chr6:32577728-32577808 0.00014 8_[+4]_64 chr22:29518145-29518225 0.00014 33_[+4]_39 chr17:2193307-2193387 0.00014 49_[+4]_23 chr12:29206634-29206714 0.00014 7_[+4]_65 chr10:31074324-31074404 0.00017 7_[+4]_65 chr7:18297525-18297605 0.00017 13_[+4]_59 chrX:40791347-40791427 0.00021 61_[+4]_11 chr3:193577190-193577270 0.00021 67_[+4]_5 chr6:32977418-32977498 0.00021 12_[+4]_60 chr6:33080087-33080167 0.00021 19_[+4]_53 chr16:53910859-53910939 0.00024 11_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAATSAG width=8 seqs=54 chr10:103348865-10334894 ( 62) CCAATCAG 1 chr12:117818078-11781815 ( 10) CCAATCAG 1 chr10:46168276-46168356 ( 17) CCAATCAG 1 chr7:100401299-100401379 ( 10) CCAATCAG 1 chr11:69492665-69492745 ( 28) CCAATCAG 1 chr1:229483468-229483548 ( 10) CCAATCAG 1 chr6:32920940-32921020 ( 9) CCAATCAG 1 chr6:32557614-32557694 ( 53) CCAATCAG 1 chr12:14569692-14569772 ( 69) CCAATCAG 1 chrX:39060773-39060853 ( 55) CCAATCAG 1 chr6:32634514-32634594 ( 4) CCAATCAG 1 chr6:45153269-45153349 ( 50) CCAATCAG 1 chr11:94987572-94987652 ( 60) CCAATCAG 1 chr19:36927629-36927709 ( 53) CCAATCAG 1 chr6:32405369-32405449 ( 23) CCAATCAG 1 chr18:7830603-7830683 ( 10) CCAATCAG 1 chr16:16002088-16002168 ( 2) CCAATGAG 1 chr6:32658157-32658237 ( 15) CCAATGAG 1 chr10:112631576-11263165 ( 37) CCAATAAG 1 chr17:42728761-42728841 ( 4) CCAATAAG 1 chr10:81127642-81127722 ( 2) CCAATAAG 1 chr2:100088238-100088318 ( 10) CCAATAAG 1 chr5:134327983-134328063 ( 28) CCAATAAG 1 chrX:129350479-129350559 ( 5) CCAATAAG 1 chrX:53111322-53111402 ( 34) CCAATCGG 1 chr6:26440627-26440707 ( 71) CCAATCAA 1 chr12:54090150-54090230 ( 45) CCAATCAA 1 chr1:2302822-2302902 ( 20) CCAATCAA 1 chr5:34592041-34592121 ( 25) CCAATCAA 1 chr2:196916520-196916600 ( 27) CCAATCAA 1 chr9:118982181-118982261 ( 62) CCAATCAA 1 chr6:32784859-32784939 ( 14) CCAATCAA 1 chr1:51887785-51887865 ( 59) CCAATGAA 1 chr19:36822656-36822736 ( 22) CCAATGGG 1 chr6:30181248-30181328 ( 29) CCAATGGG 1 chr19:11362068-11362148 ( 9) CCAATGAA 1 chr1:27917568-27917648 ( 63) CCAATGGG 1 chr6:31239916-31239996 ( 29) CCAATGGG 1 chr19:47178239-47178319 ( 21) CCAATGGG 1 chr21:21760915-21760995 ( 59) CCAATGGG 1 chr7:156347282-156347362 ( 17) CCAATGAA 1 chr6:29532801-29532881 ( 33) CCAATGGG 1 chr6:31325008-31325088 ( 25) CCAATGGG 1 chr6:32577728-32577808 ( 9) CCAATAGG 1 chr22:29518145-29518225 ( 34) CCAATAAA 1 chr17:2193307-2193387 ( 50) CCAATAAA 1 chr12:29206634-29206714 ( 8) CCAATAGG 1 chr10:31074324-31074404 ( 8) CCAGTCAG 1 chr7:18297525-18297605 ( 14) CCAGTCAG 1 chrX:40791347-40791427 ( 62) CCAATCAC 1 chr3:193577190-193577270 ( 68) CCAGTGAG 1 chr6:32977418-32977498 ( 13) CCAATCAC 1 chr6:33080087-33080167 ( 20) CCAGTGAG 1 chr16:53910859-53910939 ( 12) CCAATAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 1.7e-027 -1240 206 -1240 -1240 -1240 206 -1240 -1240 195 -1240 -1240 -1240 184 -1240 -171 -1240 -1240 -1240 -1240 195 -34 111 20 -1240 159 -1240 -12 -1240 -10 -270 158 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.7e-027 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.925926 0.000000 0.074074 0.000000 0.000000 0.000000 0.000000 1.000000 0.203704 0.518519 0.277778 0.000000 0.777778 0.000000 0.222222 0.000000 0.240741 0.037037 0.722222 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-4 regular expression -------------------------------------------------------------------------------- CCAAT[CGA][AG][GA] -------------------------------------------------------------------------------- Time 15.37 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACATCA MEME-5 width = 8 sites = 20 llr = 207 E-value = 2.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACATCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:8::a pos.-specific C :::a::a: probability G :a::21:: matrix T a::::a:: bits 2.1 * * * 1.9 **** ** 1.6 **** *** 1.4 **** *** Relative 1.2 ******** Entropy 1.0 ******** (14.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACATCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:50934978-50935058 41 1.61e-05 TGGCAACCCG TGACATCA CATGGAACTG chr17:64807224-64807304 38 1.61e-05 CAGCAACTGA TGACATCA TCTAAGGCTG chr15:80237135-80237215 36 1.61e-05 TGGTGACAGA TGACATCA TGGATTCATC chr15:43738722-43738802 22 1.61e-05 CTTTCAGACA TGACATCA CTGGTTGCTA chr1:228263214-228263294 49 1.61e-05 TGGCAACAGG TGACATCA GAGCCCAGCA chr5:8578049-8578129 44 1.61e-05 aaaagatgta tgacatca ctggtcgtca chr5:149789471-149789551 41 1.61e-05 TGGTAACTCA TGACATCA CAGACTGGCT chr17:78751256-78751336 51 1.61e-05 taacgactaa tgacatca ggcatctttt chr19:50703420-50703500 58 1.61e-05 GTAGTGTTGA TGACATCA CCAGTTACCA chrX:39060773-39060853 28 1.61e-05 AGCCTGCTAC TGACATCA CCATATCCGG chr21:21760915-21760995 35 1.61e-05 TGGTGGCAGG TGACATCA CAGATTCATC chr5:134327983-134328063 52 1.61e-05 aaaagatgtt tgacatca ctagtcgtta chr1:30788504-30788584 28 1.61e-05 TGTTCCTGTG TGACATCA GCAGTCACCA chr21:39235095-39235175 40 1.61e-05 GACTGATGTG TGACATCA TTTGTTGCCA chr5:149790998-149791078 56 1.61e-05 TGGCAACAGC TGACATCA CACCTAGCTG chr6:116550566-116550646 38 3.11e-05 CGCACAGGTT TGACGTCA GCGGTTGTCA chr14:100208583-10020866 19 3.11e-05 TGGTTTTATG TGACGTCA GTGGTTGCCA chrX:149784758-149784838 38 3.11e-05 CCAGAAACAC TGACGTCA CAGAGTCATA chr7:150871985-150872065 35 3.11e-05 CAGCGACCCT TGACGTCA GGGATCACGG chr22:25534263-25534343 26 4.61e-05 tggaaatgag tgacagca ctttttgctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:50934978-50935058 1.6e-05 40_[+5]_32 chr17:64807224-64807304 1.6e-05 37_[+5]_35 chr15:80237135-80237215 1.6e-05 35_[+5]_37 chr15:43738722-43738802 1.6e-05 21_[+5]_51 chr1:228263214-228263294 1.6e-05 48_[+5]_24 chr5:8578049-8578129 1.6e-05 43_[+5]_29 chr5:149789471-149789551 1.6e-05 40_[+5]_32 chr17:78751256-78751336 1.6e-05 50_[+5]_22 chr19:50703420-50703500 1.6e-05 57_[+5]_15 chrX:39060773-39060853 1.6e-05 27_[+5]_45 chr21:21760915-21760995 1.6e-05 34_[+5]_38 chr5:134327983-134328063 1.6e-05 51_[+5]_21 chr1:30788504-30788584 1.6e-05 27_[+5]_45 chr21:39235095-39235175 1.6e-05 39_[+5]_33 chr5:149790998-149791078 1.6e-05 55_[+5]_17 chr6:116550566-116550646 3.1e-05 37_[+5]_35 chr14:100208583-10020866 3.1e-05 18_[+5]_54 chrX:149784758-149784838 3.1e-05 37_[+5]_35 chr7:150871985-150872065 3.1e-05 34_[+5]_38 chr22:25534263-25534343 4.6e-05 25_[+5]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACATCA width=8 seqs=20 chr19:50934978-50935058 ( 41) TGACATCA 1 chr17:64807224-64807304 ( 38) TGACATCA 1 chr15:80237135-80237215 ( 36) TGACATCA 1 chr15:43738722-43738802 ( 22) TGACATCA 1 chr1:228263214-228263294 ( 49) TGACATCA 1 chr5:8578049-8578129 ( 44) TGACATCA 1 chr5:149789471-149789551 ( 41) TGACATCA 1 chr17:78751256-78751336 ( 51) TGACATCA 1 chr19:50703420-50703500 ( 58) TGACATCA 1 chrX:39060773-39060853 ( 28) TGACATCA 1 chr21:21760915-21760995 ( 35) TGACATCA 1 chr5:134327983-134328063 ( 52) TGACATCA 1 chr1:30788504-30788584 ( 28) TGACATCA 1 chr21:39235095-39235175 ( 40) TGACATCA 1 chr5:149790998-149791078 ( 56) TGACATCA 1 chr6:116550566-116550646 ( 38) TGACGTCA 1 chr14:100208583-10020866 ( 19) TGACGTCA 1 chrX:149784758-149784838 ( 38) TGACGTCA 1 chr7:150871985-150872065 ( 35) TGACGTCA 1 chr22:25534263-25534343 ( 26) TGACAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 2.1e-009 -1097 -1097 -1097 195 -1097 -1097 205 -1097 195 -1097 -1097 -1097 -1097 206 -1097 -1097 163 -1097 -27 -1097 -1097 -1097 -227 187 -1097 206 -1097 -1097 195 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.1e-009 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 0.050000 0.950000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACATCA MEME-5 regular expression -------------------------------------------------------------------------------- TGAC[AG]TCA -------------------------------------------------------------------------------- Time 18.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:129350479-129350559 4.33e-03 4_[+4(4.59e-05)]_68 chr20:30483050-30483130 4.98e-03 41_[+2(1.52e-05)]_31 chr12:29206634-29206714 3.87e-02 80 chr10:72147417-72147497 4.40e-01 80 chr6:33043613-33043693 9.17e-02 80 chr19:55840447-55840527 3.05e-03 57_[+3(3.04e-05)]_15 chr6:33080087-33080167 2.18e-02 80 chr18:7830603-7830683 3.76e-04 9_[+4(1.49e-05)]_25_[+2(1.52e-05)]_\ 30 chr5:149790998-149791078 3.73e-03 44_[+1(4.49e-05)]_3_[+5(1.61e-05)]_\ 17 chr8:80813238-80813318 1.50e-02 64_[+2(1.52e-05)]_8 chr21:39235095-39235175 1.12e-04 39_[+5(1.61e-05)]_3_[+2(2.94e-05)]_\ 22 chr1:215821282-215821362 2.21e-02 34_[+1(5.87e-05)]_38 chr8:86858683-86858763 3.28e-04 41_[+2(4.37e-05)]_31 chr6:32784859-32784939 3.27e-03 13_[+4(7.57e-05)]_59 chr1:175099444-175099524 7.36e-03 57_[+3(1.52e-05)]_15 chr2:218298937-218299017 3.07e-03 32_[+1(8.77e-05)]_8_[+3(4.45e-05)]_\ 24 chr1:30788504-30788584 7.67e-03 27_[+5(1.61e-05)]_45 chr6:33041463-33041543 1.79e-02 56_[+2(4.37e-05)]_16 chr5:70829646-70829726 3.76e-03 80 chr6:32441486-32441566 5.67e-01 80 chr14:102630859-10263093 1.47e-03 56_[+2(2.94e-05)]_16 chr2:17702202-17702282 5.53e-01 80 chr6:32405369-32405449 3.24e-03 22_[+4(1.49e-05)]_50 chr14:94575808-94575888 3.99e-02 40_[+2(1.52e-05)]_32 chr19:36927629-36927709 1.20e-03 32_[+1(4.49e-05)]_12_[+4(1.49e-05)]_\ 20 chr11:94987572-94987652 2.98e-04 22_[+1(5.87e-05)]_29_[+4(1.49e-05)]_\ 13 chr4:77795501-77795581 1.62e-05 12_[+2(2.94e-05)]_14_[+1(3.09e-05)]_\ 17_[+3(3.04e-05)]_13 chr17:9720573-9720653 3.86e-02 80 chr8:86158365-86158445 4.04e-02 31_[+1(3.09e-05)]_41 chr1:16563032-16563112 7.95e-01 80 chr2:47285670-47285750 2.10e-01 80 chr4:106631928-106632008 6.13e-02 80 chrX:106809652-106809732 1.61e-01 80 chr3:156835801-156835881 3.66e-01 80 chr8:130926244-130926324 1.80e-02 80 chr11:10336386-10336466 2.58e-03 56_[+3(1.52e-05)]_16 chr6:32997341-32997421 2.39e-02 80 chr17:59647735-59647815 2.32e-02 70_[+3(6.08e-05)]_2 chr11:3936209-3936289 2.06e-02 80 chr6:32977418-32977498 3.33e-03 45_[+2(4.37e-05)]_27 chr15:78128878-78128958 7.62e-03 12_[+1(1.49e-05)]_60 chr22:44576712-44576792 5.16e-03 47_[+2(1.52e-05)]_25 chr12:14570774-14570854 6.60e-04 26_[+2(4.37e-05)]_24_[+3(1.52e-05)]_\ 14 chr22:25534263-25534343 1.10e-03 25_[+5(4.61e-05)]_16_[+3(3.04e-05)]_\ 23 chr10:11680232-11680312 8.36e-03 80 chr1:204174768-204174848 3.46e-01 80 chr6:32595828-32595908 8.79e-02 80 chr11:33369181-33369261 2.88e-02 31_[+1(4.49e-05)]_41 chr2:161135017-161135097 7.34e-02 80 chr14:93640452-93640532 1.41e-01 80 chr5:134327983-134328063 2.09e-04 27_[+4(4.59e-05)]_16_[+5(1.61e-05)]_\ 21 chr2:100088238-100088318 4.05e-03 9_[+4(4.59e-05)]_63 chr6:136641029-136641109 6.36e-03 80 chr1:164672844-164672924 9.16e-03 80 chr6:32658157-32658237 2.77e-02 14_[+4(2.99e-05)]_58 chr6:31325008-31325088 1.48e-01 80 chr6:29532801-29532881 5.54e-02 80 chr9:118982181-118982261 2.53e-03 61_[+4(7.57e-05)]_11 chr7:22911868-22911948 1.02e-02 62_[+2(9.04e-05)]_10 chr2:196916520-196916600 6.30e-02 26_[+4(7.57e-05)]_46 chr11:47235900-47235980 5.57e-01 80 chr5:34592041-34592121 5.37e-02 24_[+4(7.57e-05)]_48 chr16:50524886-50524966 3.62e-03 37_[+1(1.49e-05)]_35 chr20:30947986-30948066 1.84e-01 80 chr6:69345789-69345869 4.77e-02 36_[+2(4.37e-05)]_36 chr19:3857757-3857837 6.61e-03 40_[+2(4.37e-05)]_32 chr6:45153269-45153349 2.47e-03 49_[+4(1.49e-05)]_23 chr12:14561291-14561371 3.70e-03 16_[+2(2.94e-05)]_48_[+3(7.73e-05)] chr6:32634514-32634594 1.16e-03 3_[+4(1.49e-05)]_69 chr1:159158367-159158447 2.16e-02 59_[+3(1.52e-05)]_13 chr16:67196472-67196552 1.09e-02 46_[+3(3.04e-05)]_26 chr6:30227236-30227316 1.63e-03 80 chr10:47661861-47661941 5.13e-02 80 chr1:65935141-65935221 9.30e-02 80 chr10:97515353-97515433 3.80e-02 80 chr7:156347282-156347362 2.05e-02 80 chr4:4341272-4341352 4.99e-03 80 chrX:16623267-16623347 1.22e-02 32_[+2(1.52e-05)]_40 chr3:100375952-100376032 4.77e-01 80 chr8:19607932-19608012 2.33e-01 80 chr21:21760915-21760995 2.58e-03 34_[+5(1.61e-05)]_38 chr5:158671332-158671412 9.25e-03 72_[+3(6.08e-05)] chr6:43137552-43137632 6.36e-02 80 chr2:24007977-24008057 3.39e-02 29_[+1(3.09e-05)]_43 chr15:56541408-56541488 5.05e-02 20_[+2(5.99e-05)]_52 chrX:39060773-39060853 6.64e-04 27_[+5(1.61e-05)]_19_[+4(1.49e-05)]_\ 18 chr16:53910859-53910939 1.32e-02 80 chr4:57257592-57257672 1.30e-01 26_[+2(1.52e-05)]_46 chr1:207927106-207927186 1.28e-02 80 chr12:14569692-14569772 2.97e-05 7_[+2(4.37e-05)]_24_[+3(7.73e-05)]_\ 21_[+4(1.49e-05)]_4 chr10:81127642-81127722 8.60e-03 1_[+4(4.59e-05)]_71 chr2:228250459-228250539 4.85e-02 36_[+2(4.37e-05)]_36 chr1:156877358-156877438 7.91e-02 80 chr5:149792497-149792577 6.91e-03 23_[+3(3.04e-05)]_49 chr3:144812501-144812581 3.91e-02 46_[+1(1.49e-05)]_26 chr20:25520978-25521058 2.07e-02 80 chr19:50703420-50703500 5.79e-04 57_[+5(1.61e-05)]_15 chr6:29520487-29520567 3.85e-03 59_[+3(7.73e-05)]_13 chr5:118603875-118603955 4.34e-01 80 chr4:26332005-26332085 6.40e-02 80 chr19:49163200-49163280 3.27e-02 6_[+3(3.04e-05)]_66 chr2:32205928-32206008 1.46e-02 26_[+1(1.49e-05)]_46 chr9:92104985-92105065 2.27e-02 80 chr16:12074575-12074655 9.09e-02 80 chr2:170687997-170688077 1.81e-02 80 chr17:2193307-2193387 9.51e-04 35_[+2(1.52e-05)]_37 chr7:70390496-70390576 9.40e-04 31_[+1(3.09e-05)]_17_[+3(3.04e-05)]_\ 16 chr7:44389072-44389152 8.77e-02 38_[+1(1.49e-05)]_34 chr17:78751256-78751336 3.07e-03 50_[+5(1.61e-05)]_22 chr6:32557614-32557694 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16_[+3(3.04e-05)]_8 chr7:140683748-140683828 1.02e-02 8_[+2(5.99e-05)]_64 chr1:160323207-160323287 3.60e-02 80 chr5:8578049-8578129 1.53e-04 43_[+5(1.61e-05)]_29 chr6:134373787-134373867 1.58e-02 80 chr6:32812483-32812563 6.15e-03 23_[+1(5.87e-05)]_49 chr19:38586445-38586525 2.66e-01 80 chr5:112563645-112563725 1.24e-01 80 chr12:67835732-67835812 1.08e-01 48_[+1(8.77e-05)]_24 chr19:42570332-42570412 3.39e-02 39_[+2(5.99e-05)]_33 chr11:69455844-69455924 7.62e-02 80 chr3:132843518-132843598 5.10e-02 6_[+2(1.52e-05)]_66 chr5:133576518-133576598 1.73e-02 80 chr5:173270962-173271042 3.99e-01 80 chr6:32407519-32407599 2.55e-03 37_[+1(1.49e-05)]_27_[+3(4.45e-05)] chr6:131783282-131783362 6.56e-01 80 chr12:4381215-4381295 4.80e-03 55_[+3(6.08e-05)]_17 chr19:47082702-47082782 3.98e-04 24_[+3(7.73e-05)]_48 chr11:72510662-72510742 4.22e-03 34_[+2(4.37e-05)]_38 chr19:11362068-11362148 1.24e-02 80 chr2:183507204-183507284 2.05e-02 80 chr7:150871985-150872065 6.83e-05 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chr6:30181248-30181328 8.65e-05 2_[+3(1.52e-05)]_70 chr19:47854926-47855006 1.69e-03 19_[+1(1.49e-05)]_27_[+3(4.45e-05)]_\ 18 chr15:80237135-80237215 1.09e-02 35_[+5(1.61e-05)]_37 chr18:3664368-3664448 2.81e-01 80 chr11:68574580-68574660 3.35e-02 80 chr12:54090150-54090230 1.41e-03 29_[+1(1.49e-05)]_7_[+4(7.57e-05)]_\ 28 chr3:167834314-167834394 4.05e-03 36_[+1(1.49e-05)]_36 chr1:12626198-12626278 9.36e-02 80 chr6:32577728-32577808 3.58e-02 80 chr12:117518716-11751879 5.81e-02 80 chr10:102241404-10224148 1.01e-03 64_[+3(1.52e-05)]_8 chr19:41098192-41098272 1.13e-03 31_[+1(1.49e-05)]_24_[+3(3.04e-05)]_\ 9 chr17:6735035-6735115 1.43e-03 54_[+2(2.94e-05)]_18 chr6:31430811-31430891 7.94e-02 80 chr5:149790270-149790350 2.16e-02 37_[+2(2.94e-05)]_35 chr4:184793797-184793877 3.39e-03 31_[+2(1.52e-05)]_41 chr4:79566003-79566083 1.89e-01 80 chr12:50219307-50219387 1.53e-02 34_[+1(3.09e-05)]_38 chr1:31688021-31688101 1.18e-02 58_[+1(1.49e-05)]_14 chr17:64807224-64807304 2.01e-03 26_[+1(5.87e-05)]_3_[+5(1.61e-05)]_\ 35 chr12:57609635-57609715 4.63e-02 80 chr6:26440627-26440707 2.02e-03 39_[+1(5.87e-05)]_23_[+4(7.57e-05)]_\ 2 chr11:62272742-62272822 1.35e-02 33_[+1(1.49e-05)]_39 chr4:99873078-99873158 5.54e-02 43_[+1(1.49e-05)]_29 chr6:26458017-26458097 5.71e-02 50_[+1(5.87e-05)]_22 chr11:69453836-69453916 1.59e-04 37_[+1(3.09e-05)]_13_[+3(3.04e-05)]_\ 14 chr19:18215329-18215409 1.06e-03 80 chr2:9471940-9472020 1.26e-01 80 chr10:31074324-31074404 2.09e-04 49_[+1(1.49e-05)]_23 chr20:305991-306071 9.82e-02 38_[+1(5.87e-05)]_34 chr19:36822656-36822736 1.72e-03 43_[+2(5.99e-05)]_29 chr17:79603436-79603516 2.02e-01 80 chr5:57021607-57021687 5.98e-02 80 chr16:83929017-83929097 4.34e-02 80 chr19:41283475-41283555 5.30e-04 38_[+2(1.52e-05)]_34 chr1:51887785-51887865 1.56e-03 80 chr6:26365403-26365483 2.57e-01 80 chr1:203296554-203296634 9.60e-04 44_[+3(1.52e-05)]_28 chr16:16002088-16002168 5.67e-05 1_[+4(2.99e-05)]_58_[+2(1.52e-05)]_\ 5 chr19:50934978-50935058 7.50e-06 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23_[+1(4.49e-05)]_49 chr1:207998104-207998184 4.54e-03 80 chr10:46168276-46168356 3.39e-03 16_[+4(1.49e-05)]_56 chr7:65398079-65398159 2.80e-01 80 chr1:181002980-181003060 2.10e-02 38_[+1(1.49e-05)]_34 chr17:5765354-5765434 3.86e-04 1_[+3(1.52e-05)]_71 chr6:26421502-26421582 8.73e-03 42_[+1(3.09e-05)]_30 chr15:52944252-52944332 3.27e-02 80 chr1:150534683-150534763 3.26e-02 37_[+2(4.37e-05)]_35 chr1:46049211-46049291 5.09e-01 80 chr19:45430453-45430533 5.99e-04 33_[+1(3.09e-05)]_29_[+3(1.52e-05)]_\ 2 chr1:43195840-43195920 2.93e-02 37_[+5(9.13e-05)]_35 chr4:187680596-187680676 5.00e-01 80 chr12:117818078-11781815 2.24e-03 9_[+4(1.49e-05)]_25_[+2(4.37e-05)]_\ 30 chr14:57476823-57476903 4.32e-01 80 chr10:103348865-10334894 1.52e-03 61_[+4(1.49e-05)]_11 chr19:10565109-10565189 1.84e-03 67_[+3(6.08e-05)]_5 chr19:21688283-21688363 1.72e-01 33_[+1(5.87e-05)]_39 chr10:112631576-11263165 3.12e-04 8_[+3(4.45e-05)]_20_[+4(4.59e-05)]_\ 36 chrX:53111322-53111402 6.19e-03 33_[+4(7.57e-05)]_39 chr11:86454923-86455003 8.77e-02 33_[+1(1.49e-05)]_39 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************