******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM39.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:68630672-68630752 1.0000 80 chr9:123652151-123652231 1.0000 80 chr6:27094098-27094178 1.0000 80 chr20:47897142-47897222 1.0000 80 chr2:168796630-168796710 1.0000 80 chr10:98561402-98561482 1.0000 80 chr8:128750752-128750832 1.0000 80 chr5:180669141-180669221 1.0000 80 chr3:23973264-23973344 1.0000 80 chr11:62620434-62620514 1.0000 80 chr6:27113305-27113385 1.0000 80 chr6:28832381-28832461 1.0000 80 chr7:132383658-132383738 1.0000 80 chr16:2204137-2204217 1.0000 80 chr19:51300100-51300180 1.0000 80 chr19:3983321-3983401 1.0000 80 chr19:47761033-47761113 1.0000 80 chr19:11698560-11698640 1.0000 80 chr19:54672419-54672499 1.0000 80 chr4:41992928-41993008 1.0000 80 chr19:5790264-5790344 1.0000 80 chr9:139923944-139924024 1.0000 80 chr1:36183982-36184062 1.0000 80 chr17:39847381-39847461 1.0000 80 chr22:19496104-19496184 1.0000 80 chr7:134854625-134854705 1.0000 80 chr7:147959973-147960053 1.0000 80 chr9:133587079-133587159 1.0000 80 chr22:20016038-20016118 1.0000 80 chr22:21130655-21130735 1.0000 80 chr22:22081559-22081639 1.0000 80 chr1:150549690-150549770 1.0000 80 chr15:65611377-65611457 1.0000 80 chr19:18898582-18898662 1.0000 80 chr19:51661840-51661920 1.0000 80 chr6:31698587-31698667 1.0000 80 chr22:21922760-21922840 1.0000 80 chr20:50809151-50809231 1.0000 80 chr1:11954161-11954241 1.0000 80 chrX:47519381-47519461 1.0000 80 chr7:1501849-1501929 1.0000 80 chr17:35767608-35767688 1.0000 80 chr22:22274331-22274411 1.0000 80 chr19:49993244-49993324 1.0000 80 chr17:74732267-74732347 1.0000 80 chr15:75744693-75744773 1.0000 80 chr1:28838770-28838850 1.0000 80 chr12:56499077-56499157 1.0000 80 chr9:130683715-130683795 1.0000 80 chr22:21399674-21399754 1.0000 80 chr7:157668011-157668091 1.0000 80 chr22:23252224-23252304 1.0000 80 chr5:137803542-137803622 1.0000 80 chr7:142636845-142636925 1.0000 80 chr6:31701917-31701997 1.0000 80 chr1:226899063-226899143 1.0000 80 chr11:60666651-60666731 1.0000 80 chr6:27468216-27468296 1.0000 80 chr1:100111800-100111880 1.0000 80 chr22:19462251-19462331 1.0000 80 chr6:39197788-39197868 1.0000 80 chr1:36982137-36982217 1.0000 80 chr11:65192818-65192898 1.0000 80 chr6:147534478-147534558 1.0000 80 chr22:22377540-22377620 1.0000 80 chr17:40729342-40729422 1.0000 80 chr7:140353376-140353456 1.0000 80 chr3:142837702-142837782 1.0000 80 chr19:1270118-1270198 1.0000 80 chr7:73062721-73062801 1.0000 80 chr19:46905621-46905701 1.0000 80 chr6:33386579-33386659 1.0000 80 chr1:54518337-54518417 1.0000 80 chr1:173834101-173834181 1.0000 80 chr11:47198969-47199049 1.0000 80 chr12:112280758-11228083 1.0000 80 chr22:22936558-22936638 1.0000 80 chr8:120992615-120992695 1.0000 80 chr16:228159-228239 1.0000 80 chr1:51442380-51442460 1.0000 80 chr11:44545130-44545210 1.0000 80 chr19:35758468-35758548 1.0000 80 chr17:74262531-74262611 1.0000 80 chr22:22415566-22415646 1.0000 80 chr6:45890597-45890677 1.0000 80 chr5:138533556-138533636 1.0000 80 chr12:6645830-6645910 1.0000 80 chr6:30583993-30584073 1.0000 80 chr22:22373734-22373814 1.0000 80 chr16:30933186-30933266 1.0000 80 chr22:22325458-22325538 1.0000 80 chr7:98062808-98062888 1.0000 80 chr22:21802927-21803007 1.0000 80 chr22:23239193-23239273 1.0000 80 chr11:62342059-62342139 1.0000 80 chr7:5568163-5568243 1.0000 80 chr19:56155882-56155962 1.0000 80 chr7:150021325-150021405 1.0000 80 chr7:150066461-150066541 1.0000 80 chr16:89059624-89059704 1.0000 80 chr17:27071812-27071892 1.0000 80 chr2:91815140-91815220 1.0000 80 chr22:23032699-23032779 1.0000 80 chr22:22454790-22454870 1.0000 80 chr7:100878475-100878555 1.0000 80 chr9:139379487-139379567 1.0000 80 chr22:21271030-21271110 1.0000 80 chr19:13133815-13133895 1.0000 80 chr7:137583958-137584038 1.0000 80 chr22:19880168-19880248 1.0000 80 chr3:172208115-172208195 1.0000 80 chr1:31504645-31504725 1.0000 80 chr5:43213178-43213258 1.0000 80 chr22:19595937-19596017 1.0000 80 chr5:141706003-141706083 1.0000 80 chr22:20944854-20944934 1.0000 80 chr17:56407905-56407985 1.0000 80 chr17:76348385-76348465 1.0000 80 chr17:79603431-79603511 1.0000 80 chr6:30693738-30693818 1.0000 80 chr6:27113567-27113647 1.0000 80 chr22:23088279-23088359 1.0000 80 chr6:27861608-27861688 1.0000 80 chr17:25418270-25418350 1.0000 80 chr1:28573674-28573754 1.0000 80 chr6:161560244-161560324 1.0000 80 chr3:15310799-15310879 1.0000 80 chr22:22235567-22235647 1.0000 80 chr17:36860946-36861026 1.0000 80 chr11:65272789-65272869 1.0000 80 chr19:17457122-17457202 1.0000 80 chr16:2203915-2203995 1.0000 80 chr1:207222615-207222695 1.0000 80 chr20:62326808-62326888 1.0000 80 chr17:62223951-62224031 1.0000 80 chr5:137802579-137802659 1.0000 80 chr22:22376684-22376764 1.0000 80 chr11:65197467-65197547 1.0000 80 chr11:62433083-62433163 1.0000 80 chr9:130538780-130538860 1.0000 80 chr13:115046340-11504642 1.0000 80 chr22:23421530-23421610 1.0000 80 chr6:26131335-26131415 1.0000 80 chr9:136024162-136024242 1.0000 80 chr6:158294959-158295039 1.0000 80 chr22:19506432-19506512 1.0000 80 chr15:90701186-90701266 1.0000 80 chr7:100238542-100238622 1.0000 80 chr3:45167426-45167506 1.0000 80 chr7:150758649-150758729 1.0000 80 chr1:149860104-149860184 1.0000 80 chr8:82754692-82754772 1.0000 80 chr22:20925869-20925949 1.0000 80 chr19:38270229-38270309 1.0000 80 chr12:8235202-8235282 1.0000 80 chr22:19915271-19915351 1.0000 80 chr10:70988809-70988889 1.0000 80 chr19:56165712-56165792 1.0000 80 chr3:160167093-160167173 1.0000 80 chr19:54662801-54662881 1.0000 80 chr6:138026601-138026681 1.0000 80 chr7:130912013-130912093 1.0000 80 chr6:74226965-74227045 1.0000 80 chr11:118964895-11896497 1.0000 80 chr17:56084195-56084275 1.0000 80 chr21:45445047-45445127 1.0000 80 chr6:13328111-13328191 1.0000 80 chr16:81130632-81130712 1.0000 80 chr11:116603551-11660363 1.0000 80 chr22:22067559-22067639 1.0000 80 chr8:74961183-74961263 1.0000 80 chr18:6682865-6682945 1.0000 80 chr16:30547122-30547202 1.0000 80 chr17:74731191-74731271 1.0000 80 chr11:65269119-65269199 1.0000 80 chr17:41400242-41400322 1.0000 80 chr1:21695099-21695179 1.0000 80 chr21:33909371-33909451 1.0000 80 chr8:22553449-22553529 1.0000 80 chr1:46986211-46986291 1.0000 80 chr6:143771131-143771211 1.0000 80 chr3:9439874-9439954 1.0000 80 chr10:46983752-46983832 1.0000 80 chr17:80452351-80452431 1.0000 80 chr6:27835127-27835207 1.0000 80 chr16:68098753-68098833 1.0000 80 chr16:89988609-89988689 1.0000 80 chr12:125075799-12507587 1.0000 80 chr6:13575204-13575284 1.0000 80 chr15:73076625-73076705 1.0000 80 chr19:44259515-44259595 1.0000 80 chr8:146012092-146012172 1.0000 80 chr11:118977586-11897766 1.0000 80 chr10:63510860-63510940 1.0000 80 chr3:186938154-186938234 1.0000 80 chr1:175094585-175094665 1.0000 80 chr6:31695298-31695378 1.0000 80 chr1:165798178-165798258 1.0000 80 chr12:53553289-53553369 1.0000 80 chr6:26123685-26123765 1.0000 80 chr1:204662266-204662346 1.0000 80 chr1:16941988-16942068 1.0000 80 chr12:50236495-50236575 1.0000 80 chr19:8389898-8389978 1.0000 80 chr11:118186578-11818665 1.0000 80 chr5:108063146-108063226 1.0000 80 chr6:30646831-30646911 1.0000 80 chr1:16951559-16951639 1.0000 80 chr19:42612818-42612898 1.0000 80 chr6:119558583-119558663 1.0000 80 chr1:32573988-32574068 1.0000 80 chr11:65197685-65197765 1.0000 80 chr1:48192045-48192125 1.0000 80 chr7:129076342-129076422 1.0000 80 chr2:57987077-57987157 1.0000 80 chr7:5534422-5534502 1.0000 80 chr11:75156544-75156624 1.0000 80 chr10:46998689-46998769 1.0000 80 chr2:113484482-113484562 1.0000 80 chr19:41860169-41860249 1.0000 80 chr4:146019819-146019899 1.0000 80 chr9:131452825-131452905 1.0000 80 chr16:231112-231192 1.0000 80 chr20:48599549-48599629 1.0000 80 chr11:14929453-14929533 1.0000 80 chr17:38514835-38514915 1.0000 80 chr5:40825809-40825889 1.0000 80 chr22:22555369-22555449 1.0000 80 chr22:23096190-23096270 1.0000 80 chr19:10655320-10655400 1.0000 80 chr22:21411182-21411262 1.0000 80 chr19:46283282-46283362 1.0000 80 chr6:18263909-18263989 1.0000 80 chr17:27039929-27040009 1.0000 80 chr22:19434582-19434662 1.0000 80 chr6:68598797-68598877 1.0000 80 chr1:110452985-110453065 1.0000 80 chr11:72436376-72436456 1.0000 80 chr17:56072919-56072999 1.0000 80 chr20:39763989-39764069 1.0000 80 chr1:200254767-200254847 1.0000 80 chr22:22918935-22919015 1.0000 80 chr21:34961302-34961382 1.0000 80 chrX:129300136-129300216 1.0000 80 chr2:216153978-216154058 1.0000 80 chr16:57716810-57716890 1.0000 80 chr4:6548464-6548544 1.0000 80 chr11:65270590-65270670 1.0000 80 chr10:74096890-74096970 1.0000 80 chr11:119194344-11919442 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RBM39/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM39.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.223 C 0.278 G 0.276 T 0.224 Background letter frequencies (from file dataset with add-one prior applied): A 0.223 C 0.278 G 0.276 T 0.224 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGCTGCAG MEME-1 width = 8 sites = 27 llr = 241 E-value = 6.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCTGCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7:2:::a1 pos.-specific C ::8::8:: probability G 3a::a2:9 matrix T :::a:::: bits 2.2 * * 2.0 * ** * 1.7 * ** * 1.5 * ** ** Relative 1.3 ** ** ** Entropy 1.1 ******** (12.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCTGCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:30547122-30547202 69 1.81e-05 GTCTCCCTCT AGCTGCAG CCAG chr22:23088279-23088359 68 1.81e-05 GGGGCAGCAG AGCTGCAG CCAGG chr9:139379487-139379567 43 1.81e-05 GAGAGACCAT AGCTGCAG AAACCAACCC chr22:23032699-23032779 36 1.81e-05 AGCTGGTTGG AGCTGCAG GAACCTCTGT chr6:45890597-45890677 18 1.81e-05 TGTGGGAGGA AGCTGCAG AGCTAGCGAG chr9:130683715-130683795 40 1.81e-05 ATGAGGACCA AGCTGCAG GAGCTGGTGG chr15:65611377-65611457 73 1.81e-05 AGGCCAGGCC AGCTGCAG chr7:147959973-147960053 66 1.81e-05 atccgccgtc agctgcag agctgct chr1:16941988-16942068 48 4.05e-05 aggaggttga ggctgcag tgagccatga chr8:22553449-22553529 22 4.05e-05 CCCCAGGAGG GGCTGCAG AGTGAGGAGC chr22:19506432-19506512 27 4.05e-05 CTGCAGGGGT GGCTGCAG CAGCCCCCTC chr16:89059624-89059704 65 4.05e-05 CCCAGCCCCG GGCTGCAG CTGGGCAG chr1:36982137-36982217 71 4.05e-05 CGGGGGTCTG GGCTGCAG TC chr9:139923944-139924024 5 4.05e-05 CCCT GGCTGCAG CCGCATCCCC chr6:30693738-30693818 31 5.50e-05 GCATAGGCTT AGATGCAG GATCCAGGGA chr1:226899063-226899143 4 5.50e-05 ACC AGATGCAG TACCTGCCTC chr1:11954161-11954241 26 5.50e-05 CACCTGCTGG AGATGCAG TAGCAGCGCC chr7:132383658-132383738 8 5.50e-05 gaaagaT AGATGCAG AGCCGAAGGT chr6:27094098-27094178 61 5.50e-05 TCTTCAGAGA AGATGCAG CCATTGTGGG chr11:14929453-14929533 56 7.30e-05 AAGGCCAGTG AGCTGGAG CAGGAGCAGG chr11:116603551-11660363 8 7.30e-05 CAGGCGC AGCTGGAG GGTAGGAAGC chr8:128750752-128750832 49 7.30e-05 ACGGCCGACC AGCTGGAG ATGGTGACCG chr5:108063146-108063226 25 1.06e-04 gtcaggtcac agctgcaa tattacttcc chr10:46983752-46983832 25 1.06e-04 cgagacagcc agctgcaa gggaagaagc chr5:40825809-40825889 43 1.28e-04 ctgtcactga ggctggag tgcagtggtg chr7:150021325-150021405 41 1.28e-04 AGAGCAGAGG GGCTGGAG AGGGACTGGG chr9:133587079-133587159 2 1.60e-04 C AGGTGCAG CGCTCTGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:30547122-30547202 1.8e-05 68_[+1]_4 chr22:23088279-23088359 1.8e-05 67_[+1]_5 chr9:139379487-139379567 1.8e-05 42_[+1]_30 chr22:23032699-23032779 1.8e-05 35_[+1]_37 chr6:45890597-45890677 1.8e-05 17_[+1]_55 chr9:130683715-130683795 1.8e-05 39_[+1]_33 chr15:65611377-65611457 1.8e-05 72_[+1] chr7:147959973-147960053 1.8e-05 65_[+1]_7 chr1:16941988-16942068 4.1e-05 47_[+1]_25 chr8:22553449-22553529 4.1e-05 21_[+1]_51 chr22:19506432-19506512 4.1e-05 26_[+1]_46 chr16:89059624-89059704 4.1e-05 64_[+1]_8 chr1:36982137-36982217 4.1e-05 70_[+1]_2 chr9:139923944-139924024 4.1e-05 4_[+1]_68 chr6:30693738-30693818 5.5e-05 30_[+1]_42 chr1:226899063-226899143 5.5e-05 3_[+1]_69 chr1:11954161-11954241 5.5e-05 25_[+1]_47 chr7:132383658-132383738 5.5e-05 7_[+1]_65 chr6:27094098-27094178 5.5e-05 60_[+1]_12 chr11:14929453-14929533 7.3e-05 55_[+1]_17 chr11:116603551-11660363 7.3e-05 7_[+1]_65 chr8:128750752-128750832 7.3e-05 48_[+1]_24 chr5:108063146-108063226 0.00011 24_[+1]_48 chr10:46983752-46983832 0.00011 24_[+1]_48 chr5:40825809-40825889 0.00013 42_[+1]_30 chr7:150021325-150021405 0.00013 40_[+1]_32 chr9:133587079-133587159 0.00016 1_[+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCTGCAG width=8 seqs=27 chr16:30547122-30547202 ( 69) AGCTGCAG 1 chr22:23088279-23088359 ( 68) AGCTGCAG 1 chr9:139379487-139379567 ( 43) AGCTGCAG 1 chr22:23032699-23032779 ( 36) AGCTGCAG 1 chr6:45890597-45890677 ( 18) AGCTGCAG 1 chr9:130683715-130683795 ( 40) AGCTGCAG 1 chr15:65611377-65611457 ( 73) AGCTGCAG 1 chr7:147959973-147960053 ( 66) AGCTGCAG 1 chr1:16941988-16942068 ( 48) GGCTGCAG 1 chr8:22553449-22553529 ( 22) GGCTGCAG 1 chr22:19506432-19506512 ( 27) GGCTGCAG 1 chr16:89059624-89059704 ( 65) GGCTGCAG 1 chr1:36982137-36982217 ( 71) GGCTGCAG 1 chr9:139923944-139924024 ( 5) GGCTGCAG 1 chr6:30693738-30693818 ( 31) AGATGCAG 1 chr1:226899063-226899143 ( 4) AGATGCAG 1 chr1:11954161-11954241 ( 26) AGATGCAG 1 chr7:132383658-132383738 ( 8) AGATGCAG 1 chr6:27094098-27094178 ( 61) AGATGCAG 1 chr11:14929453-14929533 ( 56) AGCTGGAG 1 chr11:116603551-11660363 ( 8) AGCTGGAG 1 chr8:128750752-128750832 ( 49) AGCTGGAG 1 chr5:108063146-108063226 ( 25) AGCTGCAA 1 chr10:46983752-46983832 ( 25) AGCTGCAA 1 chr5:40825809-40825889 ( 43) GGCTGGAG 1 chr7:150021325-150021405 ( 41) GGCTGGAG 1 chr9:133587079-133587159 ( 2) AGGTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 6.8e-003 166 -1140 10 -1140 -1140 -1140 186 -1140 -27 149 -289 -1140 -1140 -1140 -1140 216 -1140 -1140 186 -1140 -1140 155 -58 -1140 217 -1140 -1140 -1140 -159 -1140 175 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 6.8e-003 0.703704 0.000000 0.296296 0.000000 0.000000 0.000000 1.000000 0.000000 0.185185 0.777778 0.037037 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.814815 0.185185 0.000000 1.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.925926 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGCAG MEME-1 regular expression -------------------------------------------------------------------------------- [AG]GCTGCAG -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF DGRGRVAG MEME-2 width = 8 sites = 81 llr = 551 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGRGRVAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:5333a: pos.-specific C :::::2:: probability G 4a5775:a matrix T 3::::::: bits 2.2 * 2.0 * ** 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.1 **** ** (9.8 bits) 0.9 **** ** 0.7 **** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGAG consensus T AAAA sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRGRVAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:38514835-38514915 15 2.20e-05 GGCCTAGCCG GGAGGGAG TAAGGCAAAG chr11:75156544-75156624 71 2.20e-05 AGGGAAGGAG GGAGGGAG GA chr17:79603431-79603511 7 2.20e-05 TGGTGG GGAGGGAG CTCTGTAACG chr6:27468216-27468296 30 2.20e-05 aggaagagag ggagggag ggaCAagcca chr19:51300100-51300180 56 2.20e-05 TCTGGCCCTG GGAGGGAG CCTGGCTTCC chr1:204662266-204662346 13 6.70e-05 gaaagagGGC TGAGGGAG GTGTGGCCTG chr22:21802927-21803007 45 6.70e-05 CTTTTGGGGG TGAGGGAG CTTGGGTAGA chr6:31698587-31698667 11 6.70e-05 TGGAGGGGGT TGAGGGAG TCCCAGGAGG chr6:119558583-119558663 48 1.25e-04 GGTACTTTTA AGAGGGAG TCACTGCTGC chr10:63510860-63510940 24 1.25e-04 CTCCCCCAGC AGAGGGAG CAGCACAGGC chr11:118964895-11896497 26 1.25e-04 CAGTCACTCG GGAGGAAG ATGTGCCTGT chr22:23421530-23421610 29 1.25e-04 gagttttcca ggaggaag gaacagccag chr17:27071812-27071892 11 1.25e-04 ATCACACAAT GGAGGAAG GACTGAATCC chr7:5568163-5568243 33 1.25e-04 CAGGATGGCA TGGGGGAG GGCATACCCC chr22:23239193-23239273 31 1.25e-04 ATTGATTGCC TGGGGGAG GCTAATCAGA chr17:74732267-74732347 60 1.25e-04 TCTTGGACAC TGGGGGAG GACTCCTGGA chr9:139923944-139924024 47 1.25e-04 ACTGGCCACC AGAGGGAG CTACAAGGCA chr16:57716810-57716890 64 1.86e-04 AAAGACCCGA GGAGAGAG AGGATGGGG chr22:23096190-23096270 31 1.86e-04 GCAGCCACCA GGGGGAAG CAGAGAATCA chr19:44259515-44259595 57 1.86e-04 CGAAGACCCC GGGGGAAG AGGTCTAGAC chr22:23032699-23032779 20 1.86e-04 TGAGTGGACA GGGGGAAG CTGGTTGGAG chr15:75744693-75744773 4 1.86e-04 AGG AGGGGGAG CGGAGCTCAT chr17:35767608-35767688 64 1.86e-04 CTCTTGTGAA AGGGGGAG AAAGAAGAT chr19:51661840-51661920 15 1.86e-04 TCACACCACC AGGGGGAG CCATGGAGTT chr2:57987077-57987157 51 2.23e-04 CCAGCTGGCA GGGGAGAG ATGGCCACTA chr1:165798178-165798258 38 2.23e-04 TCTCCCGGCT GGGGAGAG CAGAGCAGGA chr1:175094585-175094665 29 2.23e-04 AGTGTTTGGG TGAGGAAG TACATAGAAG chr19:35758468-35758548 39 2.23e-04 gaggaggctg tgaggaag aaggggtcgg chr22:22918935-22919015 65 2.91e-04 GGCTTGGATT TGGGGAAG GGAATTGC chr3:45167426-45167506 23 2.91e-04 GCTGAACTCA GGAGGCAG CTGGGACATT chr6:30693738-30693818 13 2.91e-04 GAGTCTTAAC TGGGGAAG GCATAGGCTT chr7:1501849-1501929 67 2.91e-04 actttgttgg agaggaag gggaaa chr6:27113305-27113385 30 2.91e-04 CCTGTGCTGC TGGGGAAG TTCCCTTCTC chr17:27039929-27040009 8 4.01e-04 AAGAGGA GGAGAAAG GATGGGGTCC chr19:41860169-41860249 25 4.01e-04 GACCCAGAAC GGAAGGAG AGTCAGGCTG chr12:53553289-53553369 52 4.01e-04 CCAGCCAACA GGGGGCAG AAGCGCATCA chr19:56165712-56165792 14 4.01e-04 TCCCGAAGCC GGAAGGAG CCGAGGTACC chr20:62326808-62326888 36 4.01e-04 GTGAGCCTCA TGGGAGAG ACATCGCTGG chr22:22235567-22235647 8 4.01e-04 aaagaaa agagagag gctgggcatg chr22:23088279-23088359 57 4.01e-04 TCCACCAGCT GGGGGCAG CAGAGCTGCA chr17:56407905-56407985 68 4.01e-04 GGGTATGTAG GGGGGCAG GATAG chr22:21271030-21271110 1 4.01e-04 . AGGGGAAG CCTCGGGGCC chr9:139379487-139379567 30 4.01e-04 CACTAAGCTA TGGGAGAG ACCATAGCTG chr7:100878475-100878555 38 4.01e-04 GTAACAGGTA GGGGGCAG CGGTGCTGTA chr2:91815140-91815220 52 4.01e-04 AGCCCTGCTA TGGGAGAG CGCAACCAGC chr6:33386579-33386659 64 4.01e-04 TGAATCAGAG GGAAGGAG AACGAGGGC chr6:39197788-39197868 32 4.01e-04 CCCTGCATCT GGAAGGAG TGGGCAGCTC chr19:54672419-54672499 2 4.01e-04 C AGAGAGAG GCTCAGGTTC chr13:115046340-11504642 38 4.76e-04 AAAAAGAGAA GGGGAAAG CCATTTTAAA chr22:22325458-22325538 56 4.76e-04 CGCCCTGCAG GGGAGGAG AGGGTATCTG chr22:21130655-21130735 29 4.76e-04 CACTGCAGCC TGAGGCAG GTGCTGAGAT chr1:28573674-28573754 7 5.43e-04 AGCAGA TGGGGCAG TTCAGCCTCT chr7:150021325-150021405 64 5.43e-04 CTGGGCGGAG TGAGAAAG GCCTGGCAT chr5:68630672-68630752 28 5.43e-04 GTTCAGAGGT AGAGGCAG TCATTGAAAA chr2:216153978-216154058 23 6.55e-04 tttgaccaga aggggcag tcactgtgta chr11:14929453-14929533 72 6.55e-04 AGCAGGAGCA GGAGACAG A chr12:50236495-50236575 39 6.55e-04 ATACTCGTTT TGGGAAAG TTTCGATGGG chr6:27861608-27861688 68 6.55e-04 TCACGCTTCC AGAGAAAG AGCCT chr22:20944854-20944934 22 6.55e-04 GAGCTCTGCT TGGAGGAG GGAAGGTCTG chr10:46983752-46983832 70 7.42e-04 aggtgccact aggaggag ctg chr1:21695099-21695179 30 7.42e-04 CTGGGCTGGC AGGAGGAG CCACCTGCCA chr7:150066461-150066541 19 7.42e-04 TTTGGCCATC AGGGAAAG CCCAGACTCT chr6:45890597-45890677 51 7.42e-04 GAGTGATCAG GGGAGAAG TTCTGGTTAG chr7:147959973-147960053 19 7.42e-04 tgttcggcag ggggacag caccacctgg chr10:74096890-74096970 42 7.85e-04 TGTCAGCTGT GGGAAGAG CCTTGACACC chr5:40825809-40825889 20 7.85e-04 tttctttttt tgagacag tctcgctgtc chr6:30583993-30584073 57 7.85e-04 CAGCAAGGCA GGGAAGAG ATAGGTGGTA chr5:138533556-138533636 19 7.85e-04 AATTCCACAT GGGAAGAG ACACACGGGT chr11:116603551-11660363 31 8.73e-04 GAAGCATGAA GGAAGCAG AACGCTATGA chr11:65270590-65270670 41 9.65e-04 CATTTCATCT GGGAGCAG AAAACAGCAG chr11:65269119-65269199 40 9.65e-04 CTTTTATCCT TGGAAGAG TATTCCCAGT chr22:19595937-19596017 40 9.65e-04 TGTCTTTGGC AGAAAGAG ACTGAAGTTT chr22:19496104-19496184 69 9.65e-04 AGGATGGCTC AGGGACAG ATCA chr19:38270229-38270309 64 1.01e-03 GGTGGCTTGT GGGAAAAG TGGCTCGGA chr6:27835127-27835207 19 1.05e-03 TGCGCTCCTT AGAAGCAG CCACAGCCTT chr17:25418270-25418350 16 1.05e-03 gcagctcaac tggagcag taggagggca chr16:231112-231192 60 1.10e-03 AGCCTCTCCC AGGAGCAG CCTTCTTGCC chr21:33909371-33909451 54 1.10e-03 tgaactaaac agaaaaag tcctgcccac chr6:26131335-26131415 59 1.15e-03 agggcatctt tgaaacag gtagagtcag chr12:112280758-11228083 50 1.17e-03 TGTGCTCAGC TGGAACAG AGGTGAGTGG chr22:22377540-22377620 68 1.21e-03 GGCGATGGGT GGAGGGTG AGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRGRVAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:38514835-38514915 2.2e-05 14_[+2]_58 chr11:75156544-75156624 2.2e-05 70_[+2]_2 chr17:79603431-79603511 2.2e-05 6_[+2]_66 chr6:27468216-27468296 2.2e-05 29_[+2]_43 chr19:51300100-51300180 2.2e-05 55_[+2]_17 chr1:204662266-204662346 6.7e-05 12_[+2]_60 chr22:21802927-21803007 6.7e-05 44_[+2]_28 chr6:31698587-31698667 6.7e-05 10_[+2]_62 chr6:119558583-119558663 0.00012 47_[+2]_25 chr10:63510860-63510940 0.00012 23_[+2]_49 chr11:118964895-11896497 0.00012 25_[+2]_47 chr22:23421530-23421610 0.00012 28_[+2]_44 chr17:27071812-27071892 0.00012 10_[+2]_62 chr7:5568163-5568243 0.00012 32_[+2]_40 chr22:23239193-23239273 0.00012 30_[+2]_42 chr17:74732267-74732347 0.00012 59_[+2]_13 chr9:139923944-139924024 0.00012 46_[+2]_26 chr16:57716810-57716890 0.00019 63_[+2]_9 chr22:23096190-23096270 0.00019 30_[+2]_42 chr19:44259515-44259595 0.00019 56_[+2]_16 chr22:23032699-23032779 0.00019 19_[+2]_53 chr15:75744693-75744773 0.00019 3_[+2]_69 chr17:35767608-35767688 0.00019 63_[+2]_9 chr19:51661840-51661920 0.00019 14_[+2]_58 chr2:57987077-57987157 0.00022 50_[+2]_22 chr1:165798178-165798258 0.00022 37_[+2]_35 chr1:175094585-175094665 0.00022 28_[+2]_44 chr19:35758468-35758548 0.00022 38_[+2]_34 chr22:22918935-22919015 0.00029 64_[+2]_8 chr3:45167426-45167506 0.00029 22_[+2]_50 chr6:30693738-30693818 0.00029 12_[+2]_60 chr7:1501849-1501929 0.00029 66_[+2]_6 chr6:27113305-27113385 0.00029 29_[+2]_43 chr17:27039929-27040009 0.0004 7_[+2]_65 chr19:41860169-41860249 0.0004 24_[+2]_48 chr12:53553289-53553369 0.0004 51_[+2]_21 chr19:56165712-56165792 0.0004 13_[+2]_59 chr20:62326808-62326888 0.0004 35_[+2]_37 chr22:22235567-22235647 0.0004 7_[+2]_65 chr22:23088279-23088359 0.0004 56_[+2]_16 chr17:56407905-56407985 0.0004 67_[+2]_5 chr22:21271030-21271110 0.0004 [+2]_72 chr9:139379487-139379567 0.0004 29_[+2]_43 chr7:100878475-100878555 0.0004 37_[+2]_35 chr2:91815140-91815220 0.0004 51_[+2]_21 chr6:33386579-33386659 0.0004 63_[+2]_9 chr6:39197788-39197868 0.0004 31_[+2]_41 chr19:54672419-54672499 0.0004 1_[+2]_71 chr13:115046340-11504642 0.00048 37_[+2]_35 chr22:22325458-22325538 0.00048 55_[+2]_17 chr22:21130655-21130735 0.00048 28_[+2]_44 chr1:28573674-28573754 0.00054 6_[+2]_66 chr7:150021325-150021405 0.00054 63_[+2]_9 chr5:68630672-68630752 0.00054 27_[+2]_45 chr2:216153978-216154058 0.00066 22_[+2]_50 chr11:14929453-14929533 0.00066 71_[+2]_1 chr12:50236495-50236575 0.00066 38_[+2]_34 chr6:27861608-27861688 0.00066 67_[+2]_5 chr22:20944854-20944934 0.00066 21_[+2]_51 chr10:46983752-46983832 0.00074 69_[+2]_3 chr1:21695099-21695179 0.00074 29_[+2]_43 chr7:150066461-150066541 0.00074 18_[+2]_54 chr6:45890597-45890677 0.00074 50_[+2]_22 chr7:147959973-147960053 0.00074 18_[+2]_54 chr10:74096890-74096970 0.00079 41_[+2]_31 chr5:40825809-40825889 0.00079 19_[+2]_53 chr6:30583993-30584073 0.00079 56_[+2]_16 chr5:138533556-138533636 0.00079 18_[+2]_54 chr11:116603551-11660363 0.00087 30_[+2]_42 chr11:65270590-65270670 0.00097 40_[+2]_32 chr11:65269119-65269199 0.00097 39_[+2]_33 chr22:19595937-19596017 0.00097 39_[+2]_33 chr22:19496104-19496184 0.00097 68_[+2]_4 chr19:38270229-38270309 0.001 63_[+2]_9 chr6:27835127-27835207 0.0011 18_[+2]_54 chr17:25418270-25418350 0.0011 15_[+2]_57 chr16:231112-231192 0.0011 59_[+2]_13 chr21:33909371-33909451 0.0011 53_[+2]_19 chr6:26131335-26131415 0.0011 58_[+2]_14 chr12:112280758-11228083 0.0012 49_[+2]_23 chr22:22377540-22377620 0.0012 67_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRGRVAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGRGRVAG width=8 seqs=81 chr17:38514835-38514915 ( 15) GGAGGGAG 1 chr11:75156544-75156624 ( 71) GGAGGGAG 1 chr17:79603431-79603511 ( 7) GGAGGGAG 1 chr6:27468216-27468296 ( 30) GGAGGGAG 1 chr19:51300100-51300180 ( 56) GGAGGGAG 1 chr1:204662266-204662346 ( 13) TGAGGGAG 1 chr22:21802927-21803007 ( 45) TGAGGGAG 1 chr6:31698587-31698667 ( 11) TGAGGGAG 1 chr6:119558583-119558663 ( 48) AGAGGGAG 1 chr10:63510860-63510940 ( 24) AGAGGGAG 1 chr11:118964895-11896497 ( 26) GGAGGAAG 1 chr22:23421530-23421610 ( 29) GGAGGAAG 1 chr17:27071812-27071892 ( 11) GGAGGAAG 1 chr7:5568163-5568243 ( 33) TGGGGGAG 1 chr22:23239193-23239273 ( 31) TGGGGGAG 1 chr17:74732267-74732347 ( 60) TGGGGGAG 1 chr9:139923944-139924024 ( 47) AGAGGGAG 1 chr16:57716810-57716890 ( 64) GGAGAGAG 1 chr22:23096190-23096270 ( 31) GGGGGAAG 1 chr19:44259515-44259595 ( 57) GGGGGAAG 1 chr22:23032699-23032779 ( 20) GGGGGAAG 1 chr15:75744693-75744773 ( 4) AGGGGGAG 1 chr17:35767608-35767688 ( 64) AGGGGGAG 1 chr19:51661840-51661920 ( 15) AGGGGGAG 1 chr2:57987077-57987157 ( 51) GGGGAGAG 1 chr1:165798178-165798258 ( 38) GGGGAGAG 1 chr1:175094585-175094665 ( 29) TGAGGAAG 1 chr19:35758468-35758548 ( 39) TGAGGAAG 1 chr22:22918935-22919015 ( 65) TGGGGAAG 1 chr3:45167426-45167506 ( 23) GGAGGCAG 1 chr6:30693738-30693818 ( 13) TGGGGAAG 1 chr7:1501849-1501929 ( 67) AGAGGAAG 1 chr6:27113305-27113385 ( 30) TGGGGAAG 1 chr17:27039929-27040009 ( 8) GGAGAAAG 1 chr19:41860169-41860249 ( 25) GGAAGGAG 1 chr12:53553289-53553369 ( 52) GGGGGCAG 1 chr19:56165712-56165792 ( 14) GGAAGGAG 1 chr20:62326808-62326888 ( 36) TGGGAGAG 1 chr22:22235567-22235647 ( 8) AGAGAGAG 1 chr22:23088279-23088359 ( 57) GGGGGCAG 1 chr17:56407905-56407985 ( 68) GGGGGCAG 1 chr22:21271030-21271110 ( 1) AGGGGAAG 1 chr9:139379487-139379567 ( 30) TGGGAGAG 1 chr7:100878475-100878555 ( 38) GGGGGCAG 1 chr2:91815140-91815220 ( 52) TGGGAGAG 1 chr6:33386579-33386659 ( 64) GGAAGGAG 1 chr6:39197788-39197868 ( 32) GGAAGGAG 1 chr19:54672419-54672499 ( 2) AGAGAGAG 1 chr13:115046340-11504642 ( 38) GGGGAAAG 1 chr22:22325458-22325538 ( 56) GGGAGGAG 1 chr22:21130655-21130735 ( 29) TGAGGCAG 1 chr1:28573674-28573754 ( 7) TGGGGCAG 1 chr7:150021325-150021405 ( 64) TGAGAAAG 1 chr5:68630672-68630752 ( 28) AGAGGCAG 1 chr2:216153978-216154058 ( 23) AGGGGCAG 1 chr11:14929453-14929533 ( 72) GGAGACAG 1 chr12:50236495-50236575 ( 39) TGGGAAAG 1 chr6:27861608-27861688 ( 68) AGAGAAAG 1 chr22:20944854-20944934 ( 22) TGGAGGAG 1 chr10:46983752-46983832 ( 70) AGGAGGAG 1 chr1:21695099-21695179 ( 30) AGGAGGAG 1 chr7:150066461-150066541 ( 19) AGGGAAAG 1 chr6:45890597-45890677 ( 51) GGGAGAAG 1 chr7:147959973-147960053 ( 19) GGGGACAG 1 chr10:74096890-74096970 ( 42) GGGAAGAG 1 chr5:40825809-40825889 ( 20) TGAGACAG 1 chr6:30583993-30584073 ( 57) GGGAAGAG 1 chr5:138533556-138533636 ( 19) GGGAAGAG 1 chr11:116603551-11660363 ( 31) GGAAGCAG 1 chr11:65270590-65270670 ( 41) GGGAGCAG 1 chr11:65269119-65269199 ( 40) TGGAAGAG 1 chr22:19595937-19596017 ( 40) AGAAAGAG 1 chr22:19496104-19496184 ( 69) AGGGACAG 1 chr19:38270229-38270309 ( 64) GGGAAAAG 1 chr6:27835127-27835207 ( 19) AGAAGCAG 1 chr17:25418270-25418350 ( 16) TGGAGCAG 1 chr16:231112-231192 ( 60) AGGAGCAG 1 chr21:33909371-33909451 ( 54) AGAAAAAG 1 chr6:26131335-26131415 ( 59) TGAAACAG 1 chr12:112280758-11228083 ( 50) TGGAACAG 1 chr22:22377540-22377620 ( 68) GGAGGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRGRVAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.76687 E= 1.0e+000 22 -1298 69 41 -1298 -1298 186 -1298 108 -1298 94 -1298 35 -1298 137 -1298 58 -1298 127 -1298 29 -17 80 -1298 215 -1298 -1298 -418 -1298 -1298 186 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRGRVAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 1.0e+000 0.259259 0.000000 0.444444 0.296296 0.000000 0.000000 1.000000 0.000000 0.469136 0.000000 0.530864 0.000000 0.283951 0.000000 0.716049 0.000000 0.333333 0.000000 0.666667 0.000000 0.271605 0.246914 0.481481 0.000000 0.987654 0.000000 0.000000 0.012346 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRGRVAG MEME-2 regular expression -------------------------------------------------------------------------------- [GTA]G[GA][GA][GA][GAC]AG -------------------------------------------------------------------------------- Time 8.80 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTTCTTT MEME-3 width = 8 sites = 29 llr = 245 E-value = 9.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTTCTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:::2::: pos.-specific C 4:3:8:22 probability G :::::::: matrix T 5a7a:a88 bits 2.2 * * * 2.0 * * * 1.7 * * * 1.5 * * * Relative 1.3 * ***** Entropy 1.1 ******* (12.2 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTTT consensus C C CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:40825809-40825889 9 7.87e-06 AGTCACtt ttttcttt ttttgagaca chr5:43213178-43213258 73 7.87e-06 AAAATCTCCA Ttttcttt chr8:120992615-120992695 72 7.87e-06 TGCATTTCAt ttttcttt t chr3:142837702-142837782 50 7.87e-06 TGAAAAATGA TTTTCTTT CAACAACGGT chr19:18898582-18898662 68 7.87e-06 CAGCtctgtc ttttcttt tttct chr5:108063146-108063226 54 1.76e-05 cagggaagcc ctttcttt cttcctcttc chr19:47761033-47761113 36 1.76e-05 GGGGTTCGGA CTTTCTTT GAGCGTGGGA chr1:175094585-175094665 72 2.74e-05 CCTATATCCC TTCTCTTT C chr1:31504645-31504725 22 2.74e-05 CCTGCCACCA TTCTCTTT CACCATCTAT chr19:13133815-13133895 63 4.58e-05 GGATCCTtct ctctcttt ctctctctct chr6:30583993-30584073 34 4.58e-05 TCCCTCCACC CTCTCTTT GCCTGCAGCA chr1:36183982-36184062 31 4.58e-05 CGCCCCAATT TTTTATTT TTCCTATACT chr5:141706003-141706083 47 6.53e-05 GTGGCAGTCT TTTTCTTC CTACGCCACT chr6:143771131-143771211 68 7.32e-05 TGAAAGCCCC CTTTATTT CGCAG chr8:74961183-74961263 20 7.32e-05 gaaaagtagc ctttattt tggctgcctt chr22:21411182-21411262 22 1.05e-04 CTCTCCCTTC CTTTCTTC CCTGACCCAG chr11:118977586-11897766 9 1.05e-04 AGGTTCTG CTTTCTCT CTGTTGACAT chr12:125075799-12507587 52 1.05e-04 CATCCCTGAC ATTTCTTT Atctctcttc chr7:130912013-130912093 68 1.05e-04 AGGAGActtc ctttcttc ttttc chr7:150758649-150758729 55 1.05e-04 ATCTTTGTTG CTTTCTCT CCGGGCCTGG chr2:91815140-91815220 21 1.05e-04 CTAACAGCTG ATTTCTTT CTCCCAAAAT chr7:73062721-73062801 57 1.05e-04 tctcccctca ctttctct ctaccccctc chr22:19595937-19596017 56 1.13e-04 AGACTGAAGT TTCTATTT CAGTTCTCTC chr15:73076625-73076705 39 1.37e-04 GCAGAGATCG TTCTCTTC TGGATAACCA chr16:30547122-30547202 6 2.02e-04 GGGCC CTCTCTTC TAGGAGCTTC chr11:47198969-47199049 35 2.02e-04 GACGCTAGGC CTCTCTCT AGATGCCCTC chr19:11698560-11698640 44 2.02e-04 TTTCAGACGT TTTTATCT GTCCACTGCT chr17:27039929-27040009 34 2.24e-04 CCACACCTTG TTTTCTCC ACCATCATCC chr6:158294959-158295039 49 2.24e-04 CTTGGTAAGC TTGTCTTT CATGTTGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:40825809-40825889 7.9e-06 8_[+3]_64 chr5:43213178-43213258 7.9e-06 72_[+3] chr8:120992615-120992695 7.9e-06 71_[+3]_1 chr3:142837702-142837782 7.9e-06 49_[+3]_23 chr19:18898582-18898662 7.9e-06 67_[+3]_5 chr5:108063146-108063226 1.8e-05 53_[+3]_19 chr19:47761033-47761113 1.8e-05 35_[+3]_37 chr1:175094585-175094665 2.7e-05 71_[+3]_1 chr1:31504645-31504725 2.7e-05 21_[+3]_51 chr19:13133815-13133895 4.6e-05 62_[+3]_10 chr6:30583993-30584073 4.6e-05 33_[+3]_39 chr1:36183982-36184062 4.6e-05 30_[+3]_42 chr5:141706003-141706083 6.5e-05 46_[+3]_26 chr6:143771131-143771211 7.3e-05 67_[+3]_5 chr8:74961183-74961263 7.3e-05 19_[+3]_53 chr22:21411182-21411262 0.00011 21_[+3]_51 chr11:118977586-11897766 0.00011 8_[+3]_64 chr12:125075799-12507587 0.00011 51_[+3]_21 chr7:130912013-130912093 0.00011 67_[+3]_5 chr7:150758649-150758729 0.00011 54_[+3]_18 chr2:91815140-91815220 0.00011 20_[+3]_52 chr7:73062721-73062801 0.00011 56_[+3]_16 chr22:19595937-19596017 0.00011 55_[+3]_17 chr15:73076625-73076705 0.00014 38_[+3]_34 chr16:30547122-30547202 0.0002 5_[+3]_67 chr11:47198969-47199049 0.0002 34_[+3]_38 chr19:11698560-11698640 0.0002 43_[+3]_29 chr17:27039929-27040009 0.00022 33_[+3]_39 chr6:158294959-158295039 0.00022 48_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTTCTTT width=8 seqs=29 chr5:40825809-40825889 ( 9) TTTTCTTT 1 chr5:43213178-43213258 ( 73) TTTTCTTT 1 chr8:120992615-120992695 ( 72) TTTTCTTT 1 chr3:142837702-142837782 ( 50) TTTTCTTT 1 chr19:18898582-18898662 ( 68) TTTTCTTT 1 chr5:108063146-108063226 ( 54) CTTTCTTT 1 chr19:47761033-47761113 ( 36) CTTTCTTT 1 chr1:175094585-175094665 ( 72) TTCTCTTT 1 chr1:31504645-31504725 ( 22) TTCTCTTT 1 chr19:13133815-13133895 ( 63) CTCTCTTT 1 chr6:30583993-30584073 ( 34) CTCTCTTT 1 chr1:36183982-36184062 ( 31) TTTTATTT 1 chr5:141706003-141706083 ( 47) TTTTCTTC 1 chr6:143771131-143771211 ( 68) CTTTATTT 1 chr8:74961183-74961263 ( 20) CTTTATTT 1 chr22:21411182-21411262 ( 22) CTTTCTTC 1 chr11:118977586-11897766 ( 9) CTTTCTCT 1 chr12:125075799-12507587 ( 52) ATTTCTTT 1 chr7:130912013-130912093 ( 68) CTTTCTTC 1 chr7:150758649-150758729 ( 55) CTTTCTCT 1 chr2:91815140-91815220 ( 21) ATTTCTTT 1 chr7:73062721-73062801 ( 57) CTTTCTCT 1 chr22:19595937-19596017 ( 56) TTCTATTT 1 chr15:73076625-73076705 ( 39) TTCTCTTC 1 chr16:30547122-30547202 ( 6) CTCTCTTC 1 chr11:47198969-47199049 ( 35) CTCTCTCT 1 chr19:11698560-11698640 ( 44) TTTTATCT 1 chr17:27039929-27040009 ( 34) TTTTCTCC 1 chr6:158294959-158295039 ( 49) TTGTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 9.2e+001 -169 69 -1150 111 -1150 -1150 -1150 216 -1150 -1 -300 162 -1150 -1150 -1150 216 -37 158 -1150 -1150 -1150 -1150 -1150 216 -1150 -42 -1150 183 -1150 -42 -1150 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 9.2e+001 0.068966 0.448276 0.000000 0.482759 0.000000 0.000000 0.000000 1.000000 0.000000 0.275862 0.034483 0.689655 0.000000 0.000000 0.000000 1.000000 0.172414 0.827586 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.206897 0.000000 0.793103 0.000000 0.206897 0.000000 0.793103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTTT MEME-3 regular expression -------------------------------------------------------------------------------- [TC]T[TC]TCT[TC][TC] -------------------------------------------------------------------------------- Time 12.42 secs. ******************************************************************************** ******************************************************************************** MOTIF BCTBCCYY MEME-4 width = 8 sites = 105 llr = 663 E-value = 8.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCTBCCYY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::2:: pos.-specific C 5a:4a766 probability G 3::2:::: matrix T 3:a3:144 bits 2.2 * 2.0 ** 1.7 ** * 1.5 ** * Relative 1.3 ** * Entropy 1.1 ** * * (9.1 bits) 0.9 ** * ** 0.7 ** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCCC consensus T T TT sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTBCCYY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:231112-231192 30 5.19e-05 CCCCAGGCGA CCTTCCCC GTGTTTGAGT chr11:65197685-65197765 5 5.19e-05 CCCT CCTTCCCC GCCTCCCCTG chr3:9439874-9439954 54 5.19e-05 GGACGCTTCC CCTCCCCC AACGCCTCTT chr17:56084195-56084275 53 5.19e-05 GGCCTTGGAG CCTTCCCC AACTACTCGG chr19:54662801-54662881 25 5.19e-05 TTAAAATGTG Ccttcccc tcactgaagc chr3:160167093-160167173 48 5.19e-05 AGTACTCTTC CCTTCCCC TTCTCAAAGC chr9:130538780-130538860 17 5.19e-05 ATGTGAGTTC CCTCCCCC TGCCCCCAGC chr17:27071812-27071892 27 5.19e-05 AGGACTGAAT CCTCCCCC GAAGAAGGAC chr9:130683715-130683795 10 5.19e-05 AGCCTTCAG CCTCCCCC CTTGCCCAGA chr6:30646831-30646911 47 9.37e-05 tacatGTAAT CCTCCCTC CTCTCTCCTG chr7:150758649-150758729 37 9.37e-05 ATTATCACTC CCTCCCTC ATCTTTGTTG chr22:19506432-19506512 73 9.37e-05 CCTGCTCTGT CCTCCCTC chr6:30583993-30584073 22 9.37e-05 ACTTGCTGGC CCTCCCTC CACCCTCTCT chr19:3983321-3983401 54 9.37e-05 CCAGGCTGCT CCTCCCTC CATGACTCAT chr17:62223951-62224031 59 1.36e-04 CCCAGCCCAG CCTTCCCT GAGTGTATCG chr6:27113567-27113647 15 1.36e-04 AAGCTGTGCT CCTCCCCT TACCCTTGCA chr22:22415566-22415646 42 1.36e-04 CCAGAACTGT CCTTCCCT GTTCTGCTTT chr19:35758468-35758548 4 1.36e-04 GGA CCTCCCCT ATGATGGGCG chr1:54518337-54518417 30 1.36e-04 TCATCCATAT CCTCCCCT ATCCTCCTCC chr1:28838770-28838850 8 1.36e-04 ATCCTCA CCTCCCCT TTCCCTAAGG chr11:72436376-72436456 2 2.11e-04 c tctcCCCC CCACAAGCTG chr1:110452985-110453065 34 2.11e-04 AAAGGATTTC CCTCCCTT CCCAGTGCTT chr17:80452351-80452431 7 2.11e-04 AAAACC CCTCCCTT GCTCCCAGGG chr6:13328111-13328191 40 2.11e-04 GGGAGGGCTT CCTTCCTT ATTGAAAAGA chr7:130912013-130912093 15 2.11e-04 ACCAACCACT CCTCCCTT TAGTTCTCCA chr7:100238542-100238622 8 2.11e-04 CCAGAAA TCTCCCCC AGCCCAAGCC chr1:207222615-207222695 42 2.11e-04 ATATCCTGCA TCTTCCCC AAAACGATCA chr19:49993244-49993324 70 2.11e-04 TGCCAGCCAC TCTTCCCC AGG chr19:54672419-54672499 73 2.11e-04 TCCAGCCGCG CCTTCctt chr7:132383658-132383738 73 2.11e-04 CTCTCTGGTC TCTTCCCC chr16:30547122-30547202 60 2.45e-04 CGACCGCCTG TCTCCCTC TAGCTGCAGC chr16:2203915-2203995 19 2.45e-04 AGCAATAGGG TCTTCCTC ACTGACCTTG chr7:137583958-137584038 26 2.45e-04 GGTCGGTCCT TCTCCCTC ACACACCCGG chr17:39847381-39847461 20 2.45e-04 CCTCCTCAGC TCTCCCTC TGCAGAGTTC chr19:46905621-46905701 73 2.78e-04 cgctgtcaat tcttccct chr1:36183982-36184062 13 2.78e-04 TGCCTAGAGA TCTCCCCT CGCCCCAATT chr22:21411182-21411262 13 3.86e-04 ATCGGAGGCC TCTCCCTT CCTTTCTTCC chr10:63510860-63510940 13 3.86e-04 GCAGGGAAAA GCTCCCCC AGCAGAGGGA chr12:125075799-12507587 65 3.86e-04 TCTTTAtctc tcttcctt tccttcct chr9:136024162-136024242 10 3.86e-04 gggcgagtc cctgcccc tctcctgtcc chr11:44545130-44545210 62 3.86e-04 TATCTGCAAA GCTTCCCC TACAGGACAG chr1:100111800-100111880 42 3.86e-04 CTTTGGACTT GCTTCCCC GTCTGACTGT chr5:137803542-137803622 62 3.86e-04 GTGCACAGTG GCTTCCCC TCCCCGTCGG chr12:56499077-56499157 34 3.86e-04 CCTGACACCA GCTTCCCC ACCACCAGCT chr19:8389898-8389978 5 4.50e-04 TCTT CCTGCCTC ACAGAGGTGA chr21:45445047-45445127 47 4.50e-04 TGCTGCCTCA GCTCCCTC CTGAGTGCTT chr1:31504645-31504725 72 4.50e-04 ACTCTCGCTC CCTGCCTC C chr6:147534478-147534558 21 4.50e-04 aaacgatctt cctgcctc agcttgccaa chr11:65192818-65192898 13 4.50e-04 GTCTTTACCA GCTTCCTC CTGGTGGCCA chr1:226899063-226899143 14 4.50e-04 AGATGCAGTA CCTGCCTC CAGCCCTAGA chr7:157668011-157668091 21 4.50e-04 GCGCGTGAGG GCTTCCTC CTATCAGCGT chr6:31695298-31695378 7 5.15e-04 GGAGTT CCTGCCCT CTCTCACCTC chr9:139379487-139379567 59 5.15e-04 AGAAACCAAC CCTGCCCT AGGCATAAAA chr16:228159-228239 9 5.15e-04 CCCACTCA GCTCCCCT GAGGCTGGGG chr12:112280758-11228083 19 5.15e-04 ACTCCCGCCA GCTTCCCT GGTGAGTGTG chr19:1270118-1270198 66 5.15e-04 GAAGTCAGTA CCTGCCCT GAGGTGC chr19:5790264-5790344 30 5.15e-04 CAAGTCTTCT CCTGCCCT TTGGCTTCCA chr1:149860104-149860184 62 6.31e-04 CTTCAAACTT GCTCCCTT GGCTTTCAAA chr22:23088279-23088359 45 6.31e-04 GGCTGAGTCT CCTCCACC AGCTGGGGGC chr22:19880168-19880248 33 6.31e-04 AATGGCAACA GCTCCCTT ATGCTGTGGG chr22:22274331-22274411 52 6.31e-04 GAGGGACTGC CCTCCACC CCTGCAGGCC chr19:51300100-51300180 68 6.31e-04 AGGGAGCCTG GCTTCCTT GCAGG chr22:22918935-22919015 24 6.83e-04 GGCTTGGGCT CCTCCATC TGAGGCCACC chr12:8235202-8235282 22 6.83e-04 GTTATTCCAC TCTGCCTC TCCCGTAATC chr22:19462251-19462331 17 7.36e-04 GATACTTGTA CCTTCACT TAATCCTGAC chr16:68098753-68098833 41 8.39e-04 CTGGCTCTCT GCTGCCCC CGCCTGTCTA chr18:6682865-6682945 61 8.39e-04 GTGGGCACCG GCTGCCCC CAAGCTATTC chr3:45167426-45167506 67 8.39e-04 ACCTCTGCAG TCTCCACC CACCCA chr19:11698560-11698640 59 8.39e-04 TCTGTCCACT GCTGCCCC TGCATGGCCA chr6:27094098-27094178 21 8.39e-04 CACACACTGC CCTTCATT TCAAAGATGA chr11:62433083-62433163 55 9.31e-04 CGCTGTATAC CCTCCTCC ACTTCCCGCT chr7:134854625-134854705 41 9.31e-04 ATTACCAGGC CCTCCTCC TAACCTGCCC chr6:27113305-27113385 41 9.31e-04 GGGGAAGTTC CCTTCTCC TCTACTCCAA chr22:19434582-19434662 72 1.01e-03 ACACCGGACG GCTGCCCT C chr4:146019819-146019899 30 1.01e-03 GATGCCGTAG TCTCCACT CCCCCTTTAC chr5:138533556-138533636 61 1.01e-03 CCAAACCACC CCTTCTTC GGACAGATAC chr4:6548464-6548544 11 1.15e-03 CCCATCATGT GCTCCACC CGCTGTCAGA chr22:22555369-22555449 50 1.15e-03 TCGTCTTGGT GCTCCACC CTGGCATTGT chr8:74961183-74961263 30 1.15e-03 ctttattttg gctgcctt gtgcgtagct chr11:65197467-65197547 12 1.15e-03 TGTCCCTGAC TCTCCATT TCCCCATCTG chr1:28573674-28573754 70 1.15e-03 ACCGCCACAG CCTGCACC AAT chr22:22325458-22325538 9 1.15e-03 GCCCCCAT TCTCCATT CCCAGATGCA chr11:62620434-62620514 62 1.15e-03 TGTGAAAGTT TCTTCATT GGGAATTTTT chr5:108063146-108063226 67 1.27e-03 tctttcttcc tcttctcc atctcc chr6:39197788-39197868 23 1.27e-03 GGGTGAGAAC CCTGCATC TGGAAGGAGT chr1:11954161-11954241 55 1.27e-03 TCCAGGGGAC CCTGCATC CCCAGAGTGT chr1:16951559-16951639 41 1.34e-03 CACCCTGCTT CCTGCACT CCCTACCCCA chr6:28832381-28832461 2 1.34e-03 T TCTCCTTC AAAACCTGAA chr11:65270590-65270670 27 1.43e-03 CAGAAGAGTT GCTTCATT TCATCTGGGA chr17:41400242-41400322 12 1.43e-03 taacagcgca gctccatt agaactgacc chr6:138026601-138026681 14 1.43e-03 TCCAGCATTG TCTTCTCT CATTTCTGCA chr1:165798178-165798258 25 1.53e-03 GCAGGATGAT GCTTCTCC CGGCTGGGGA chr22:23239193-23239273 12 1.53e-03 AAGCTCAAAC TCTGCATC TATTGATTGC chr8:128750752-128750832 31 1.53e-03 GGTGGCGGGA GCTTCTCC ACGGCCGACC chr1:48192045-48192125 15 1.60e-03 TGGTCCCAGA GCTCCTTC AGCCACCCGG chr20:50809151-50809231 6 1.60e-03 TCTGT cctgcttc tgaaggtcag chr11:65272789-65272869 68 1.69e-03 GTACCCCTGG GCTTCTCT TAACA chr11:14929453-14929533 16 1.80e-03 CCTCCTGCTG GCTGCACT GGTGCAGGAC chr1:175094585-175094665 53 1.86e-03 GAAGAAGAGC TCTGCTTT TCCTATATCC chr9:139923944-139924024 27 1.92e-03 ATCCCCAGTG CCTCCCCA GCACTGGCCA chr7:1501849-1501929 1 1.97e-03 . Cctcccta ggaaggacca chr3:15310799-15310879 53 2.02e-03 TTCATCAAGG TCTCCCCA TCACAGATTC chr6:161560244-161560324 70 2.34e-03 TGAAGTCTAA TCTTTCCC TGT chr19:13133815-13133895 72 2.42e-03 tctctctttc tctctctc t chr20:48599549-48599629 57 2.48e-03 TATGCCGCGC TCTTTCCT CGTCAGGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTBCCYY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:231112-231192 5.2e-05 29_[+4]_43 chr11:65197685-65197765 5.2e-05 4_[+4]_68 chr3:9439874-9439954 5.2e-05 53_[+4]_19 chr17:56084195-56084275 5.2e-05 52_[+4]_20 chr19:54662801-54662881 5.2e-05 24_[+4]_48 chr3:160167093-160167173 5.2e-05 47_[+4]_25 chr9:130538780-130538860 5.2e-05 16_[+4]_56 chr17:27071812-27071892 5.2e-05 26_[+4]_46 chr9:130683715-130683795 5.2e-05 9_[+4]_63 chr6:30646831-30646911 9.4e-05 46_[+4]_26 chr7:150758649-150758729 9.4e-05 36_[+4]_36 chr22:19506432-19506512 9.4e-05 72_[+4] chr6:30583993-30584073 9.4e-05 21_[+4]_51 chr19:3983321-3983401 9.4e-05 53_[+4]_19 chr17:62223951-62224031 0.00014 58_[+4]_14 chr6:27113567-27113647 0.00014 14_[+4]_58 chr22:22415566-22415646 0.00014 41_[+4]_31 chr19:35758468-35758548 0.00014 3_[+4]_69 chr1:54518337-54518417 0.00014 29_[+4]_43 chr1:28838770-28838850 0.00014 7_[+4]_65 chr11:72436376-72436456 0.00021 1_[+4]_71 chr1:110452985-110453065 0.00021 33_[+4]_39 chr17:80452351-80452431 0.00021 6_[+4]_66 chr6:13328111-13328191 0.00021 39_[+4]_33 chr7:130912013-130912093 0.00021 14_[+4]_58 chr7:100238542-100238622 0.00021 7_[+4]_65 chr1:207222615-207222695 0.00021 41_[+4]_31 chr19:49993244-49993324 0.00021 69_[+4]_3 chr19:54672419-54672499 0.00021 72_[+4] chr7:132383658-132383738 0.00021 72_[+4] chr16:30547122-30547202 0.00024 59_[+4]_13 chr16:2203915-2203995 0.00024 18_[+4]_54 chr7:137583958-137584038 0.00024 25_[+4]_47 chr17:39847381-39847461 0.00024 19_[+4]_53 chr19:46905621-46905701 0.00028 72_[+4] chr1:36183982-36184062 0.00028 12_[+4]_60 chr22:21411182-21411262 0.00039 12_[+4]_60 chr10:63510860-63510940 0.00039 12_[+4]_60 chr12:125075799-12507587 0.00039 64_[+4]_8 chr9:136024162-136024242 0.00039 9_[+4]_63 chr11:44545130-44545210 0.00039 61_[+4]_11 chr1:100111800-100111880 0.00039 41_[+4]_31 chr5:137803542-137803622 0.00039 61_[+4]_11 chr12:56499077-56499157 0.00039 33_[+4]_39 chr19:8389898-8389978 0.00045 4_[+4]_68 chr21:45445047-45445127 0.00045 46_[+4]_26 chr1:31504645-31504725 0.00045 71_[+4]_1 chr6:147534478-147534558 0.00045 20_[+4]_52 chr11:65192818-65192898 0.00045 12_[+4]_60 chr1:226899063-226899143 0.00045 13_[+4]_59 chr7:157668011-157668091 0.00045 20_[+4]_52 chr6:31695298-31695378 0.00051 6_[+4]_66 chr9:139379487-139379567 0.00051 58_[+4]_14 chr16:228159-228239 0.00051 8_[+4]_64 chr12:112280758-11228083 0.00051 18_[+4]_54 chr19:1270118-1270198 0.00051 65_[+4]_7 chr19:5790264-5790344 0.00051 29_[+4]_43 chr1:149860104-149860184 0.00063 61_[+4]_11 chr22:23088279-23088359 0.00063 44_[+4]_28 chr22:19880168-19880248 0.00063 32_[+4]_40 chr22:22274331-22274411 0.00063 51_[+4]_21 chr19:51300100-51300180 0.00063 67_[+4]_5 chr22:22918935-22919015 0.00068 23_[+4]_49 chr12:8235202-8235282 0.00068 21_[+4]_51 chr22:19462251-19462331 0.00074 16_[+4]_56 chr16:68098753-68098833 0.00084 40_[+4]_32 chr18:6682865-6682945 0.00084 60_[+4]_12 chr3:45167426-45167506 0.00084 66_[+4]_6 chr19:11698560-11698640 0.00084 58_[+4]_14 chr6:27094098-27094178 0.00084 20_[+4]_52 chr11:62433083-62433163 0.00093 54_[+4]_18 chr7:134854625-134854705 0.00093 40_[+4]_32 chr6:27113305-27113385 0.00093 40_[+4]_32 chr22:19434582-19434662 0.001 71_[+4]_1 chr4:146019819-146019899 0.001 29_[+4]_43 chr5:138533556-138533636 0.001 60_[+4]_12 chr4:6548464-6548544 0.0012 10_[+4]_62 chr22:22555369-22555449 0.0012 49_[+4]_23 chr8:74961183-74961263 0.0012 29_[+4]_43 chr11:65197467-65197547 0.0012 11_[+4]_61 chr1:28573674-28573754 0.0012 69_[+4]_3 chr22:22325458-22325538 0.0012 8_[+4]_64 chr11:62620434-62620514 0.0012 61_[+4]_11 chr5:108063146-108063226 0.0013 66_[+4]_6 chr6:39197788-39197868 0.0013 22_[+4]_50 chr1:11954161-11954241 0.0013 54_[+4]_18 chr1:16951559-16951639 0.0013 40_[+4]_32 chr6:28832381-28832461 0.0013 1_[+4]_71 chr11:65270590-65270670 0.0014 26_[+4]_46 chr17:41400242-41400322 0.0014 11_[+4]_61 chr6:138026601-138026681 0.0014 13_[+4]_59 chr1:165798178-165798258 0.0015 24_[+4]_48 chr22:23239193-23239273 0.0015 11_[+4]_61 chr8:128750752-128750832 0.0015 30_[+4]_42 chr1:48192045-48192125 0.0016 14_[+4]_58 chr20:50809151-50809231 0.0016 5_[+4]_67 chr11:65272789-65272869 0.0017 67_[+4]_5 chr11:14929453-14929533 0.0018 15_[+4]_57 chr1:175094585-175094665 0.0019 52_[+4]_20 chr9:139923944-139924024 0.0019 26_[+4]_46 chr7:1501849-1501929 0.002 [+4]_72 chr3:15310799-15310879 0.002 52_[+4]_20 chr6:161560244-161560324 0.0023 69_[+4]_3 chr19:13133815-13133895 0.0024 71_[+4]_1 chr20:48599549-48599629 0.0025 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTBCCYY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCTBCCYY width=8 seqs=105 chr16:231112-231192 ( 30) CCTTCCCC 1 chr11:65197685-65197765 ( 5) CCTTCCCC 1 chr3:9439874-9439954 ( 54) CCTCCCCC 1 chr17:56084195-56084275 ( 53) CCTTCCCC 1 chr19:54662801-54662881 ( 25) CCTTCCCC 1 chr3:160167093-160167173 ( 48) CCTTCCCC 1 chr9:130538780-130538860 ( 17) CCTCCCCC 1 chr17:27071812-27071892 ( 27) CCTCCCCC 1 chr9:130683715-130683795 ( 10) CCTCCCCC 1 chr6:30646831-30646911 ( 47) CCTCCCTC 1 chr7:150758649-150758729 ( 37) CCTCCCTC 1 chr22:19506432-19506512 ( 73) CCTCCCTC 1 chr6:30583993-30584073 ( 22) CCTCCCTC 1 chr19:3983321-3983401 ( 54) CCTCCCTC 1 chr17:62223951-62224031 ( 59) CCTTCCCT 1 chr6:27113567-27113647 ( 15) CCTCCCCT 1 chr22:22415566-22415646 ( 42) CCTTCCCT 1 chr19:35758468-35758548 ( 4) CCTCCCCT 1 chr1:54518337-54518417 ( 30) CCTCCCCT 1 chr1:28838770-28838850 ( 8) CCTCCCCT 1 chr11:72436376-72436456 ( 2) TCTCCCCC 1 chr1:110452985-110453065 ( 34) CCTCCCTT 1 chr17:80452351-80452431 ( 7) CCTCCCTT 1 chr6:13328111-13328191 ( 40) CCTTCCTT 1 chr7:130912013-130912093 ( 15) CCTCCCTT 1 chr7:100238542-100238622 ( 8) TCTCCCCC 1 chr1:207222615-207222695 ( 42) TCTTCCCC 1 chr19:49993244-49993324 ( 70) TCTTCCCC 1 chr19:54672419-54672499 ( 73) CCTTCCTT 1 chr7:132383658-132383738 ( 73) TCTTCCCC 1 chr16:30547122-30547202 ( 60) TCTCCCTC 1 chr16:2203915-2203995 ( 19) TCTTCCTC 1 chr7:137583958-137584038 ( 26) TCTCCCTC 1 chr17:39847381-39847461 ( 20) TCTCCCTC 1 chr19:46905621-46905701 ( 73) TCTTCCCT 1 chr1:36183982-36184062 ( 13) TCTCCCCT 1 chr22:21411182-21411262 ( 13) TCTCCCTT 1 chr10:63510860-63510940 ( 13) GCTCCCCC 1 chr12:125075799-12507587 ( 65) TCTTCCTT 1 chr9:136024162-136024242 ( 10) CCTGCCCC 1 chr11:44545130-44545210 ( 62) GCTTCCCC 1 chr1:100111800-100111880 ( 42) GCTTCCCC 1 chr5:137803542-137803622 ( 62) GCTTCCCC 1 chr12:56499077-56499157 ( 34) GCTTCCCC 1 chr19:8389898-8389978 ( 5) CCTGCCTC 1 chr21:45445047-45445127 ( 47) GCTCCCTC 1 chr1:31504645-31504725 ( 72) CCTGCCTC 1 chr6:147534478-147534558 ( 21) CCTGCCTC 1 chr11:65192818-65192898 ( 13) GCTTCCTC 1 chr1:226899063-226899143 ( 14) CCTGCCTC 1 chr7:157668011-157668091 ( 21) GCTTCCTC 1 chr6:31695298-31695378 ( 7) CCTGCCCT 1 chr9:139379487-139379567 ( 59) CCTGCCCT 1 chr16:228159-228239 ( 9) GCTCCCCT 1 chr12:112280758-11228083 ( 19) GCTTCCCT 1 chr19:1270118-1270198 ( 66) CCTGCCCT 1 chr19:5790264-5790344 ( 30) CCTGCCCT 1 chr1:149860104-149860184 ( 62) GCTCCCTT 1 chr22:23088279-23088359 ( 45) CCTCCACC 1 chr22:19880168-19880248 ( 33) GCTCCCTT 1 chr22:22274331-22274411 ( 52) CCTCCACC 1 chr19:51300100-51300180 ( 68) GCTTCCTT 1 chr22:22918935-22919015 ( 24) CCTCCATC 1 chr12:8235202-8235282 ( 22) TCTGCCTC 1 chr22:19462251-19462331 ( 17) CCTTCACT 1 chr16:68098753-68098833 ( 41) GCTGCCCC 1 chr18:6682865-6682945 ( 61) GCTGCCCC 1 chr3:45167426-45167506 ( 67) TCTCCACC 1 chr19:11698560-11698640 ( 59) GCTGCCCC 1 chr6:27094098-27094178 ( 21) CCTTCATT 1 chr11:62433083-62433163 ( 55) CCTCCTCC 1 chr7:134854625-134854705 ( 41) CCTCCTCC 1 chr6:27113305-27113385 ( 41) CCTTCTCC 1 chr22:19434582-19434662 ( 72) GCTGCCCT 1 chr4:146019819-146019899 ( 30) TCTCCACT 1 chr5:138533556-138533636 ( 61) CCTTCTTC 1 chr4:6548464-6548544 ( 11) GCTCCACC 1 chr22:22555369-22555449 ( 50) GCTCCACC 1 chr8:74961183-74961263 ( 30) GCTGCCTT 1 chr11:65197467-65197547 ( 12) TCTCCATT 1 chr1:28573674-28573754 ( 70) CCTGCACC 1 chr22:22325458-22325538 ( 9) TCTCCATT 1 chr11:62620434-62620514 ( 62) TCTTCATT 1 chr5:108063146-108063226 ( 67) TCTTCTCC 1 chr6:39197788-39197868 ( 23) CCTGCATC 1 chr1:11954161-11954241 ( 55) CCTGCATC 1 chr1:16951559-16951639 ( 41) CCTGCACT 1 chr6:28832381-28832461 ( 2) TCTCCTTC 1 chr11:65270590-65270670 ( 27) GCTTCATT 1 chr17:41400242-41400322 ( 12) GCTCCATT 1 chr6:138026601-138026681 ( 14) TCTTCTCT 1 chr1:165798178-165798258 ( 25) GCTTCTCC 1 chr22:23239193-23239273 ( 12) TCTGCATC 1 chr8:128750752-128750832 ( 31) GCTTCTCC 1 chr1:48192045-48192125 ( 15) GCTCCTTC 1 chr20:50809151-50809231 ( 6) CCTGCTTC 1 chr11:65272789-65272869 ( 68) GCTTCTCT 1 chr11:14929453-14929533 ( 16) GCTGCACT 1 chr1:175094585-175094665 ( 53) TCTGCTTT 1 chr9:139923944-139924024 ( 27) CCTCCCCA 1 chr7:1501849-1501929 ( 1) CCTCCCTA 1 chr3:15310799-15310879 ( 53) TCTCCCCA 1 chr6:161560244-161560324 ( 70) TCTTTCCC 1 chr19:13133815-13133895 ( 72) TCTCTCTC 1 chr20:48599549-48599629 ( 57) TCTTTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTBCCYY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.97596 E= 8.4e+002 -1336 78 -10 25 -1336 185 -1336 -1336 -1336 -1336 -1336 216 -1336 66 -33 62 -1336 181 -1336 -297 -22 130 -1336 -85 -1336 104 -1336 94 -296 109 -1336 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTBCCYY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 8.4e+002 0.000000 0.476190 0.257143 0.266667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.438095 0.219048 0.342857 0.000000 0.971429 0.000000 0.028571 0.190476 0.685714 0.000000 0.123810 0.000000 0.571429 0.000000 0.428571 0.028571 0.590476 0.000000 0.380952 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTBCCYY MEME-4 regular expression -------------------------------------------------------------------------------- [CTG]CT[CTG]CC[CT][CT] -------------------------------------------------------------------------------- Time 15.97 secs. ******************************************************************************** ******************************************************************************** MOTIF RTTGAAAA MEME-5 width = 8 sites = 15 llr = 138 E-value = 7.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTTGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 41::aaaa pos.-specific C :3:::::: probability G 5:3a:::: matrix T 177::::: bits 2.2 **** 2.0 ***** 1.7 ***** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ****** (13.3 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTGAAAA consensus ACG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:13328111-13328191 48 7.64e-06 TTCCTTCCTT ATTGAAAA GATATCCTCT chr6:33386579-33386659 24 7.64e-06 AGCCATCTTA ATTGAAAA CCCAAAGCTT chr5:68630672-68630752 38 7.64e-06 AGAGGCAGTC ATTGAAAA ACAGGCTTTT chr16:2204137-2204217 20 1.71e-05 TGTCTCATCT GTTGAAAA AAATCCACTT chr17:74731191-74731271 55 4.36e-05 TACATCTAGG TTTGAAAA GAAAGAAGTT chr22:22067559-22067639 7 4.36e-05 acgaga actgaaaa cagggtctca chr6:30693738-30693818 48 4.36e-05 GGATCCAGGG ATGGAAAA TGGAAGCTGA chr5:43213178-43213258 56 4.36e-05 GATTCAAAAC TTTGAAAA AAATCTCCAT chr3:142837702-142837782 38 4.36e-05 ACCTAAAGCA ACTGAAAA ATGATTTTCT chr11:119194344-11919442 27 6.70e-05 ttcttgagca gtggaaaa acgatgtgac chr6:18263909-18263989 41 6.70e-05 ACACATTCTC GCTGAAAA TCACTCCGAC chr11:65269119-65269199 62 6.70e-05 CCCAGTTGAA GCTGAAAA GTACAGCACA chr17:40729342-40729422 48 6.70e-05 AGCCAGTGAT GTGGAAAA CGCCCAAGGC chr7:142636845-142636925 11 6.70e-05 CTGCAGGTAG GTGGAAAA AAAGACAGGA chr21:34961302-34961382 41 1.29e-04 TTGGCGCCTG GATGAAAA GGAAACAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:13328111-13328191 7.6e-06 47_[+5]_25 chr6:33386579-33386659 7.6e-06 23_[+5]_49 chr5:68630672-68630752 7.6e-06 37_[+5]_35 chr16:2204137-2204217 1.7e-05 19_[+5]_53 chr17:74731191-74731271 4.4e-05 54_[+5]_18 chr22:22067559-22067639 4.4e-05 6_[+5]_66 chr6:30693738-30693818 4.4e-05 47_[+5]_25 chr5:43213178-43213258 4.4e-05 55_[+5]_17 chr3:142837702-142837782 4.4e-05 37_[+5]_35 chr11:119194344-11919442 6.7e-05 26_[+5]_46 chr6:18263909-18263989 6.7e-05 40_[+5]_32 chr11:65269119-65269199 6.7e-05 61_[+5]_11 chr17:40729342-40729422 6.7e-05 47_[+5]_25 chr7:142636845-142636925 6.7e-05 10_[+5]_62 chr21:34961302-34961382 0.00013 40_[+5]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTTGAAAA width=8 seqs=15 chr6:13328111-13328191 ( 48) ATTGAAAA 1 chr6:33386579-33386659 ( 24) ATTGAAAA 1 chr5:68630672-68630752 ( 38) ATTGAAAA 1 chr16:2204137-2204217 ( 20) GTTGAAAA 1 chr17:74731191-74731271 ( 55) TTTGAAAA 1 chr22:22067559-22067639 ( 7) ACTGAAAA 1 chr6:30693738-30693818 ( 48) ATGGAAAA 1 chr5:43213178-43213258 ( 56) TTTGAAAA 1 chr3:142837702-142837782 ( 38) ACTGAAAA 1 chr11:119194344-11919442 ( 27) GTGGAAAA 1 chr6:18263909-18263989 ( 41) GCTGAAAA 1 chr11:65269119-65269199 ( 62) GCTGAAAA 1 chr17:40729342-40729422 ( 48) GTGGAAAA 1 chr7:142636845-142636925 ( 11) GTGGAAAA 1 chr21:34961302-34961382 ( 41) GATGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 7.0e+004 85 -1055 76 -75 -174 -6 -1055 158 -1055 -1055 -5 171 -1055 -1055 186 -1055 217 -1055 -1055 -1055 217 -1055 -1055 -1055 217 -1055 -1055 -1055 217 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 7.0e+004 0.400000 0.000000 0.466667 0.133333 0.066667 0.266667 0.000000 0.666667 0.000000 0.000000 0.266667 0.733333 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- [GA][TC][TG]GAAAA -------------------------------------------------------------------------------- Time 19.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:68630672-68630752 2.70e-03 37_[+5(7.64e-06)]_35 chr9:123652151-123652231 7.57e-01 80 chr6:27094098-27094178 2.83e-03 60_[+1(5.50e-05)]_12 chr20:47897142-47897222 2.99e-01 80 chr2:168796630-168796710 8.07e-01 80 chr10:98561402-98561482 4.87e-01 80 chr8:128750752-128750832 2.87e-02 48_[+1(7.30e-05)]_24 chr5:180669141-180669221 7.33e-01 80 chr3:23973264-23973344 8.61e-01 80 chr11:62620434-62620514 1.31e-01 80 chr6:27113305-27113385 3.43e-02 80 chr6:28832381-28832461 2.29e-02 80 chr7:132383658-132383738 5.30e-03 7_[+1(5.50e-05)]_65 chr16:2204137-2204217 6.02e-03 19_[+5(1.71e-05)]_53 chr19:51300100-51300180 2.54e-03 55_[+2(2.20e-05)]_17 chr19:3983321-3983401 9.61e-02 53_[+4(9.37e-05)]_19 chr19:47761033-47761113 1.49e-02 35_[+3(1.76e-05)]_37 chr19:11698560-11698640 1.27e-01 80 chr19:54672419-54672499 4.10e-02 80 chr4:41992928-41993008 8.87e-01 80 chr19:5790264-5790344 1.10e-01 80 chr9:139923944-139924024 4.56e-03 4_[+1(4.05e-05)]_68 chr1:36183982-36184062 3.47e-03 30_[+3(4.58e-05)]_42 chr17:39847381-39847461 4.02e-02 80 chr22:19496104-19496184 7.61e-02 80 chr7:134854625-134854705 3.64e-01 80 chr7:147959973-147960053 8.70e-03 65_[+1(1.81e-05)]_7 chr9:133587079-133587159 6.70e-02 80 chr22:20016038-20016118 1.21e-01 80 chr22:21130655-21130735 8.11e-02 80 chr22:22081559-22081639 3.55e-01 80 chr1:150549690-150549770 6.98e-02 80 chr15:65611377-65611457 7.91e-02 72_[+1(1.81e-05)] chr19:18898582-18898662 5.18e-02 67_[+3(7.87e-06)]_5 chr19:51661840-51661920 1.07e-01 80 chr6:31698587-31698667 5.50e-02 10_[+2(6.70e-05)]_62 chr22:21922760-21922840 6.30e-01 80 chr20:50809151-50809231 3.72e-01 80 chr1:11954161-11954241 1.62e-02 25_[+1(5.50e-05)]_47 chrX:47519381-47519461 1.07e-01 80 chr7:1501849-1501929 2.28e-02 80 chr17:35767608-35767688 1.48e-01 80 chr22:22274331-22274411 1.58e-01 80 chr19:49993244-49993324 1.54e-01 80 chr17:74732267-74732347 1.31e-01 80 chr15:75744693-75744773 1.49e-01 80 chr1:28838770-28838850 7.43e-02 80 chr12:56499077-56499157 1.53e-01 80 chr9:130683715-130683795 7.25e-04 9_[+4(5.19e-05)]_22_[+1(1.81e-05)]_\ 33 chr22:21399674-21399754 4.17e-01 80 chr7:157668011-157668091 3.00e-02 80 chr22:23252224-23252304 4.64e-01 80 chr5:137803542-137803622 4.11e-01 80 chr7:142636845-142636925 3.39e-03 10_[+5(6.70e-05)]_62 chr6:31701917-31701997 3.18e-01 80 chr1:226899063-226899143 5.46e-04 3_[+1(5.50e-05)]_69 chr11:60666651-60666731 8.38e-01 80 chr6:27468216-27468296 1.83e-02 29_[+2(2.20e-05)]_43 chr1:100111800-100111880 1.72e-01 80 chr22:19462251-19462331 5.73e-03 80 chr6:39197788-39197868 3.71e-02 80 chr1:36982137-36982217 3.90e-02 70_[+1(4.05e-05)]_2 chr11:65192818-65192898 1.26e-01 80 chr6:147534478-147534558 5.37e-01 80 chr22:22377540-22377620 2.01e-01 80 chr17:40729342-40729422 1.09e-01 47_[+5(6.70e-05)]_25 chr7:140353376-140353456 3.31e-01 80 chr3:142837702-142837782 1.26e-03 37_[+5(4.36e-05)]_4_[+3(7.87e-06)]_\ 23 chr19:1270118-1270198 4.37e-01 80 chr7:73062721-73062801 5.74e-02 80 chr19:46905621-46905701 1.30e-02 80 chr6:33386579-33386659 2.02e-03 23_[+5(7.64e-06)]_49 chr1:54518337-54518417 2.51e-01 80 chr1:173834101-173834181 8.83e-01 80 chr11:47198969-47199049 2.10e-01 80 chr12:112280758-11228083 1.41e-02 80 chr22:22936558-22936638 9.61e-01 80 chr8:120992615-120992695 6.65e-03 71_[+3(7.87e-06)]_1 chr16:228159-228239 1.08e-01 80 chr1:51442380-51442460 1.85e-01 80 chr11:44545130-44545210 7.76e-02 80 chr19:35758468-35758548 1.06e-02 80 chr17:74262531-74262611 6.87e-01 80 chr22:22415566-22415646 4.68e-02 80 chr6:45890597-45890677 5.06e-03 17_[+1(1.81e-05)]_55 chr5:138533556-138533636 8.82e-02 80 chr12:6645830-6645910 6.07e-01 80 chr6:30583993-30584073 1.75e-04 21_[+4(9.37e-05)]_4_[+3(4.58e-05)]_\ 39 chr22:22373734-22373814 3.17e-01 80 chr16:30933186-30933266 2.16e-01 80 chr22:22325458-22325538 3.65e-03 80 chr7:98062808-98062888 4.07e-01 80 chr22:21802927-21803007 2.52e-01 44_[+2(6.70e-05)]_28 chr22:23239193-23239273 7.33e-03 80 chr11:62342059-62342139 3.93e-01 80 chr7:5568163-5568243 1.75e-01 80 chr19:56155882-56155962 4.98e-01 80 chr7:150021325-150021405 7.68e-03 80 chr7:150066461-150066541 1.31e-01 80 chr16:89059624-89059704 1.11e-01 64_[+1(4.05e-05)]_8 chr17:27071812-27071892 1.14e-03 26_[+4(5.19e-05)]_46 chr2:91815140-91815220 5.12e-03 80 chr22:23032699-23032779 4.95e-03 35_[+1(1.81e-05)]_37 chr22:22454790-22454870 5.98e-01 80 chr7:100878475-100878555 5.66e-02 80 chr9:139379487-139379567 1.41e-03 42_[+1(1.81e-05)]_30 chr22:21271030-21271110 1.26e-01 80 chr19:13133815-13133895 9.23e-03 62_[+3(4.58e-05)]_10 chr7:137583958-137584038 2.96e-01 80 chr22:19880168-19880248 3.61e-01 80 chr3:172208115-172208195 3.01e-01 80 chr1:31504645-31504725 2.30e-02 21_[+3(2.74e-05)]_51 chr5:43213178-43213258 1.39e-04 55_[+5(4.36e-05)]_9_[+3(7.87e-06)] chr22:19595937-19596017 5.51e-02 80 chr5:141706003-141706083 5.46e-02 46_[+3(6.53e-05)]_26 chr22:20944854-20944934 3.69e-01 80 chr17:56407905-56407985 1.95e-02 80 chr17:76348385-76348465 3.42e-01 80 chr17:79603431-79603511 2.35e-03 6_[+2(2.20e-05)]_66 chr6:30693738-30693818 5.64e-04 30_[+1(5.50e-05)]_9_[+5(4.36e-05)]_\ 25 chr6:27113567-27113647 3.67e-01 80 chr22:23088279-23088359 1.97e-03 5_[+1(1.81e-05)]_54_[+1(1.81e-05)]_\ 5 chr6:27861608-27861688 8.22e-02 80 chr17:25418270-25418350 3.51e-01 80 chr1:28573674-28573754 1.18e-01 80 chr6:161560244-161560324 1.49e-01 80 chr3:15310799-15310879 3.50e-01 80 chr22:22235567-22235647 2.56e-01 80 chr17:36860946-36861026 4.44e-01 80 chr11:65272789-65272869 3.05e-01 80 chr19:17457122-17457202 8.64e-01 80 chr16:2203915-2203995 4.81e-02 80 chr1:207222615-207222695 2.31e-01 80 chr20:62326808-62326888 1.58e-01 80 chr17:62223951-62224031 3.30e-01 80 chr5:137802579-137802659 7.82e-01 80 chr22:22376684-22376764 9.64e-01 80 chr11:65197467-65197547 2.34e-01 80 chr11:62433083-62433163 4.35e-02 80 chr9:130538780-130538860 4.32e-02 16_[+4(5.19e-05)]_56 chr13:115046340-11504642 1.91e-02 80 chr22:23421530-23421610 5.36e-02 80 chr6:26131335-26131415 2.03e-01 80 chr9:136024162-136024242 3.56e-01 80 chr6:158294959-158295039 2.23e-01 80 chr22:19506432-19506512 5.59e-03 26_[+1(4.05e-05)]_38_[+4(9.37e-05)] chr15:90701186-90701266 2.98e-01 80 chr7:100238542-100238622 5.24e-02 80 chr3:45167426-45167506 3.87e-02 80 chr7:150758649-150758729 3.19e-02 36_[+4(9.37e-05)]_36 chr1:149860104-149860184 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2.25e-01 80 chr11:119194344-11919442 5.99e-02 26_[+5(6.70e-05)]_46 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************