******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM34.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:575656-575736 1.0000 80 chr10:76994721-76994801 1.0000 80 chr21:37529109-37529189 1.0000 80 chr7:148982311-148982391 1.0000 80 chr13:113344095-11334417 1.0000 80 chr10:15210412-15210492 1.0000 80 chr7:98972006-98972086 1.0000 80 chr4:37687823-37687903 1.0000 80 chr12:120426709-12042678 1.0000 80 chr7:73038722-73038802 1.0000 80 chr11:75526471-75526551 1.0000 80 chr1:45308800-45308880 1.0000 80 chr11:33722437-33722517 1.0000 80 chr19:54695183-54695263 1.0000 80 chr6:15662833-15662913 1.0000 80 chr22:51021536-51021616 1.0000 80 chr1:46767825-46767905 1.0000 80 chr16:22217787-22217867 1.0000 80 chr1:169862503-169862583 1.0000 80 chr3:24563157-24563237 1.0000 80 chr2:64751739-64751819 1.0000 80 chr8:22298760-22298840 1.0000 80 chr1:111681955-111682035 1.0000 80 chr7:106938746-106938826 1.0000 80 chr17:54911664-54911744 1.0000 80 chr1:28286552-28286632 1.0000 80 chr3:150128045-150128125 1.0000 80 chr19:30156235-30156315 1.0000 80 chr5:76012029-76012109 1.0000 80 chr4:2965488-2965568 1.0000 80 chr1:153748360-153748440 1.0000 80 chr19:7985325-7985405 1.0000 80 chr1:78225425-78225505 1.0000 80 chr1:24194513-24194593 1.0000 80 chr3:129345775-129345855 1.0000 80 chr17:77771949-77772029 1.0000 80 chr17:1552746-1552826 1.0000 80 chr17:37910535-37910615 1.0000 80 chr16:2033753-2033833 1.0000 80 chr19:47951047-47951127 1.0000 80 chr5:134210271-134210351 1.0000 80 chr1:165797008-165797088 1.0000 80 chr19:10676570-10676650 1.0000 80 chr1:2574461-2574541 1.0000 80 chr6:157802192-157802272 1.0000 80 chr6:20212726-20212806 1.0000 80 chr22:22179285-22179365 1.0000 80 chr7:148395797-148395877 1.0000 80 chr5:176513939-176514019 1.0000 80 chrX:152989771-152989851 1.0000 80 chr3:195163633-195163713 1.0000 80 chr20:32251369-32251449 1.0000 80 chr2:159314573-159314653 1.0000 80 chr15:90319804-90319884 1.0000 80 chr3:119395984-119396064 1.0000 80 chr1:23857345-23857425 1.0000 80 chr5:139555065-139555145 1.0000 80 chr2:219232544-219232624 1.0000 80 chr1:933727-933807 1.0000 80 chr22:22392359-22392439 1.0000 80 chr6:2989400-2989480 1.0000 80 chr8:126442911-126442991 1.0000 80 chrX:153775410-153775490 1.0000 80 chr2:65216430-65216510 1.0000 80 chr17:18266704-18266784 1.0000 80 chr1:27929867-27929947 1.0000 80 chr7:134855094-134855174 1.0000 80 chr17:76836341-76836421 1.0000 80 chr7:154795366-154795446 1.0000 80 chr7:90894065-90894145 1.0000 80 chr6:119216053-119216133 1.0000 80 chr16:2042090-2042170 1.0000 80 chr19:14142642-14142722 1.0000 80 chr1:1168537-1168617 1.0000 80 chr6:154831522-154831602 1.0000 80 chr16:70285064-70285144 1.0000 80 chr1:62903104-62903184 1.0000 80 chr12:121975295-12197537 1.0000 80 chr8:124286503-124286583 1.0000 80 chr22:23382180-23382260 1.0000 80 chr20:62258605-62258685 1.0000 80 chr17:34091319-34091399 1.0000 80 chr3:12705242-12705322 1.0000 80 chr1:26146926-26147006 1.0000 80 chr21:34100160-34100240 1.0000 80 chr9:37903862-37903942 1.0000 80 chr22:18483833-18483913 1.0000 80 chrX:153991178-153991258 1.0000 80 chr22:23386971-23387051 1.0000 80 chr7:44163124-44163204 1.0000 80 chr1:193074399-193074479 1.0000 80 chr7:128001845-128001925 1.0000 80 chr1:109419710-109419790 1.0000 80 chr16:2933155-2933235 1.0000 80 chr12:121163618-12116369 1.0000 80 chr10:75670974-75671054 1.0000 80 chr17:79455258-79455338 1.0000 80 chr1:22109405-22109485 1.0000 80 chr10:60094947-60095027 1.0000 80 chr18:11980764-11980844 1.0000 80 chr15:83378515-83378595 1.0000 80 chr1:100818238-100818318 1.0000 80 chr5:34007987-34008067 1.0000 80 chr20:39765616-39765696 1.0000 80 chr14:23771543-23771623 1.0000 80 chr9:123963595-123963675 1.0000 80 chr16:88729315-88729395 1.0000 80 chrX:150067145-150067225 1.0000 80 chr5:176924558-176924638 1.0000 80 chr17:72978402-72978482 1.0000 80 chr19:38894209-38894289 1.0000 80 chr22:21271885-21271965 1.0000 80 chr7:128045862-128045942 1.0000 80 chr11:61659172-61659252 1.0000 80 chr8:143820771-143820851 1.0000 80 chr7:97736472-97736552 1.0000 80 chr2:46524160-46524240 1.0000 80 chr6:32163575-32163655 1.0000 80 chr11:125757937-12575801 1.0000 80 chr9:130693062-130693142 1.0000 80 chr7:129074364-129074444 1.0000 80 chr1:902066-902146 1.0000 80 chr6:149887609-149887689 1.0000 80 chr3:9904483-9904563 1.0000 80 chr1:180992008-180992088 1.0000 80 chr4:925945-926025 1.0000 80 chr2:74730366-74730446 1.0000 80 chr14:105487152-10548723 1.0000 80 chr7:140178750-140178830 1.0000 80 chr19:17000808-17000888 1.0000 80 chr16:84150507-84150587 1.0000 80 chr1:1509778-1509858 1.0000 80 chr22:22139223-22139303 1.0000 80 chr11:118662533-11866261 1.0000 80 chr17:2296827-2296907 1.0000 80 chr14:103851888-10385196 1.0000 80 chr1:41707657-41707737 1.0000 80 chr5:176882637-176882717 1.0000 80 chr1:6453636-6453716 1.0000 80 chr16:4526457-4526537 1.0000 80 chr19:17650037-17650117 1.0000 80 chr7:150020505-150020585 1.0000 80 chr17:78388754-78388834 1.0000 80 chr22:22874474-22874554 1.0000 80 chr7:155437461-155437541 1.0000 80 chr7:72992895-72992975 1.0000 80 chr1:28586352-28586432 1.0000 80 chr7:151038805-151038885 1.0000 80 chrX:136520449-136520529 1.0000 80 chr7:150076182-150076262 1.0000 80 chr20:37377214-37377294 1.0000 80 chr1:26232313-26232393 1.0000 80 chr8:22462470-22462550 1.0000 80 chr7:65540743-65540823 1.0000 80 chr1:47903166-47903246 1.0000 80 chr12:104609789-10460986 1.0000 80 chr7:73589063-73589143 1.0000 80 chr15:22892364-22892444 1.0000 80 chr11:117857017-11785709 1.0000 80 chr11:71159413-71159493 1.0000 80 chr22:22090536-22090616 1.0000 80 chr10:1094861-1094941 1.0000 80 chr2:127413909-127413989 1.0000 80 chr3:87841871-87841951 1.0000 80 chr21:43373585-43373665 1.0000 80 chr10:1102543-1102623 1.0000 80 chr15:75230022-75230102 1.0000 80 chr1:26437650-26437730 1.0000 80 chr7:148845172-148845252 1.0000 80 chr9:140335983-140336063 1.0000 80 chr15:52029898-52029978 1.0000 80 chr17:46178687-46178767 1.0000 80 chr9:101984051-101984131 1.0000 80 chr8:27168469-27168549 1.0000 80 chr22:21922198-21922278 1.0000 80 chr3:12917617-12917697 1.0000 80 chr11:77301025-77301105 1.0000 80 chr10:13341972-13342052 1.0000 80 chr5:142149938-142150018 1.0000 80 chr1:212458749-212458829 1.0000 80 chr8:61429607-61429687 1.0000 80 chr2:171133977-171134057 1.0000 80 chr9:35071938-35072018 1.0000 80 chr4:56502319-56502399 1.0000 80 chr19:13264576-13264656 1.0000 80 chr22:22401945-22402025 1.0000 80 chr6:170893319-170893399 1.0000 80 chr1:161696669-161696749 1.0000 80 chr1:52608210-52608290 1.0000 80 chr4:3294179-3294259 1.0000 80 chr1:234744534-234744614 1.0000 80 chr20:47663357-47663437 1.0000 80 chr6:26209308-26209388 1.0000 80 chr21:44313402-44313482 1.0000 80 chr19:36036437-36036517 1.0000 80 chr4:187112512-187112592 1.0000 80 chr4:140097841-140097921 1.0000 80 chr3:5020021-5020101 1.0000 80 chr2:97482103-97482183 1.0000 80 chr1:145073539-145073619 1.0000 80 chr21:38362382-38362462 1.0000 80 chr22:23162771-23162851 1.0000 80 chr8:145137528-145137608 1.0000 80 chr6:44187257-44187337 1.0000 80 chr9:132597708-132597788 1.0000 80 chr1:3541376-3541456 1.0000 80 chr11:3818639-3818719 1.0000 80 chr1:2323123-2323203 1.0000 80 chr8:37756764-37756844 1.0000 80 chr7:76022803-76022883 1.0000 80 chr2:133015246-133015326 1.0000 80 chr1:201508224-201508304 1.0000 80 chr17:64299267-64299347 1.0000 80 chr14:105219411-10521949 1.0000 80 chr9:116163625-116163705 1.0000 80 chr7:156433060-156433140 1.0000 80 chr12:3862301-3862381 1.0000 80 chr11:47788660-47788740 1.0000 80 chr3:48130408-48130488 1.0000 80 chr6:43337448-43337528 1.0000 80 chr2:27593006-27593086 1.0000 80 chr1:151584753-151584833 1.0000 80 chr3:47517419-47517499 1.0000 80 chr1:206808974-206809054 1.0000 80 chr2:38152498-38152578 1.0000 80 chr21:38338530-38338610 1.0000 80 chr22:21259892-21259972 1.0000 80 chr15:40803955-40804035 1.0000 80 chr15:41056215-41056295 1.0000 80 chr2:232790824-232790904 1.0000 80 chr9:95527386-95527466 1.0000 80 chr10:72164101-72164181 1.0000 80 chr1:172502097-172502177 1.0000 80 chr21:34100363-34100443 1.0000 80 chr4:56413148-56413228 1.0000 80 chr22:22909945-22910025 1.0000 80 chr17:80455011-80455091 1.0000 80 chr1:228290736-228290816 1.0000 80 chr12:42538601-42538681 1.0000 80 chr9:139760748-139760828 1.0000 80 chr7:129843587-129843667 1.0000 80 chr16:81129964-81130044 1.0000 80 chrX:152864842-152864922 1.0000 80 chr2:131130081-131130161 1.0000 80 chr1:167691299-167691379 1.0000 80 chr2:183580952-183581032 1.0000 80 chr1:227058629-227058709 1.0000 80 chr7:148787731-148787811 1.0000 80 chr16:67562926-67563006 1.0000 80 chr22:21271650-21271730 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RBM34/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM34.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.138 C 0.367 G 0.363 T 0.131 Background letter frequencies (from file dataset with add-one prior applied): A 0.138 C 0.367 G 0.363 T 0.131 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAWWBWAA MEME-1 width = 8 sites = 14 llr = 146 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAWWBWAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A a944166a pos.-specific C ::::4:1: probability G ::::3:2: matrix T :16634:: bits 2.9 * * 2.6 * * 2.3 ** * 2.0 **** * * Relative 1.8 **** * * Entropy 1.5 **** * * (15.1 bits) 1.2 **** *** 0.9 **** *** 0.6 **** *** 0.3 **** *** 0.0 -------- Multilevel AATTCAAA consensus AAGTG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWWBWAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:22139223-22139303 49 2.19e-07 cactcggctg aattttaa gtttttaatc chr22:22401945-22402025 71 2.52e-06 aaagttaatt aattaaaa ct chr22:22179285-22179365 56 2.52e-06 ctctagtaaa aatacaaa aattagctgg chr2:171133977-171134057 69 3.47e-06 CTGCTTTAAC AAATGAAA GCAG chr22:21259892-21259972 55 4.73e-06 TTCTCTCAGA AAATCTAA ACTGAGTAGG chr7:151038805-151038885 61 5.33e-06 ACCCGGAATG AAAACAAA CGGCGGCCGC chr7:129843587-129843667 8 5.96e-06 TATTGGT AAATGTAA GTTACAGTGA chr22:23386971-23387051 46 6.93e-06 ctgagtcctg aatttaca taccaggtgt chr22:23382180-23382260 52 7.51e-06 tcatgctctc aattttga tagattgacc chr8:124286503-124286583 1 7.51e-06 . ATTTCAAA CCGGCTGCAC chr6:26209308-26209388 37 1.17e-05 TTTCTCCTGT AATTTTCA GAACAAACAA chr7:106938746-106938826 70 1.70e-05 AAGAACATGA ATTAGAAA AAT chr1:145073539-145073619 4 2.31e-05 aga aatagaga gagagagaga chr22:23162771-23162851 18 3.51e-05 ttcggtgcag aaaacaga ctcctccagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWWBWAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22139223-22139303 2.2e-07 48_[+1]_24 chr22:22401945-22402025 2.5e-06 70_[+1]_2 chr22:22179285-22179365 2.5e-06 55_[+1]_17 chr2:171133977-171134057 3.5e-06 68_[+1]_4 chr22:21259892-21259972 4.7e-06 54_[+1]_18 chr7:151038805-151038885 5.3e-06 60_[+1]_12 chr7:129843587-129843667 6e-06 7_[+1]_65 chr22:23386971-23387051 6.9e-06 45_[+1]_27 chr22:23382180-23382260 7.5e-06 51_[+1]_21 chr8:124286503-124286583 7.5e-06 [+1]_72 chr6:26209308-26209388 1.2e-05 36_[+1]_36 chr7:106938746-106938826 1.7e-05 69_[+1]_3 chr1:145073539-145073619 2.3e-05 3_[+1]_69 chr22:23162771-23162851 3.5e-05 17_[+1]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWWBWAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAWWBWAA width=8 seqs=14 chr22:22139223-22139303 ( 49) AATTTTAA 1 chr22:22401945-22402025 ( 71) AATTAAAA 1 chr22:22179285-22179365 ( 56) AATACAAA 1 chr2:171133977-171134057 ( 69) AAATGAAA 1 chr22:21259892-21259972 ( 55) AAATCTAA 1 chr7:151038805-151038885 ( 61) AAAACAAA 1 chr7:129843587-129843667 ( 8) AAATGTAA 1 chr22:23386971-23387051 ( 46) AATTTACA 1 chr22:23382180-23382260 ( 52) AATTTTGA 1 chr8:124286503-124286583 ( 1) ATTTCAAA 1 chr6:26209308-26209388 ( 37) AATTTTCA 1 chr7:106938746-106938826 ( 70) ATTAGAAA 1 chr1:145073539-145073619 ( 4) AATAGAGA 1 chr22:23162771-23162851 ( 18) AAAACAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWWBWAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 1.4e-002 285 -1045 -1045 -1045 263 -1045 -1045 12 137 -1045 -1045 229 137 -1045 -1045 229 -95 -4 -35 112 222 -1045 -1045 144 222 -136 -76 -1045 285 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWWBWAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.4e-002 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.357143 0.000000 0.000000 0.642857 0.357143 0.000000 0.000000 0.642857 0.071429 0.357143 0.285714 0.285714 0.642857 0.000000 0.000000 0.357143 0.642857 0.142857 0.214286 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWWBWAA MEME-1 regular expression -------------------------------------------------------------------------------- AA[TA][TA][CGT][AT][AG]A -------------------------------------------------------------------------------- Time 5.64 secs. ******************************************************************************** ******************************************************************************** MOTIF AMTTACTT MEME-2 width = 8 sites = 11 llr = 114 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMTTACTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A a4:162:: pos.-specific C :5::1621 probability G :2:::2:: matrix T ::a93:89 bits 2.9 * * 2.6 * * 2.3 * ** * 2.0 * ** ** Relative 1.8 * ** ** Entropy 1.5 * *** ** (15.0 bits) 1.2 * *** ** 0.9 * *** ** 0.6 ***** ** 0.3 ******** 0.0 -------- Multilevel ACTTACTT consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTACTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:129843587-129843667 27 2.84e-07 TTACAGTGAA AATTACTT ACTTACCAAT chr21:38362382-38362462 70 1.42e-06 CAGCGCCCCG ACTTACTT CTG chr6:26209308-26209388 2 1.42e-06 C AATTTCTT TCTCCAGTAA chr6:15662833-15662913 26 3.55e-06 CAGGGACCTA AGTTACTT TGCGCCGCCC chr22:22401945-22402025 63 4.10e-06 tatatttcaa agttaatt aattaaaact chr1:201508224-201508304 2 8.00e-06 C ACTTTGTT CAGGATGCCG chr1:111681955-111682035 13 1.40e-05 CAGGACCAGC AATTTCCT TTCTGTGTGG chr22:23382180-23382260 9 1.52e-05 agctttag actaaatt tgatgtaaTG chr14:103851888-10385196 37 1.96e-05 CTTGCGCTCC ACTTCCTT CACATCCTCC chr22:22179285-22179365 64 2.12e-05 aaaatacaaa aattagct gggcgtggt chr1:145073539-145073619 62 2.79e-05 CTGTTACAGC ACTTACTC CATACTCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTACTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:129843587-129843667 2.8e-07 26_[+2]_46 chr21:38362382-38362462 1.4e-06 69_[+2]_3 chr6:26209308-26209388 1.4e-06 1_[+2]_71 chr6:15662833-15662913 3.5e-06 25_[+2]_47 chr22:22401945-22402025 4.1e-06 62_[+2]_10 chr1:201508224-201508304 8e-06 1_[+2]_71 chr1:111681955-111682035 1.4e-05 12_[+2]_60 chr22:23382180-23382260 1.5e-05 8_[+2]_64 chr14:103851888-10385196 2e-05 36_[+2]_36 chr22:22179285-22179365 2.1e-05 63_[+2]_9 chr1:145073539-145073619 2.8e-05 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTACTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMTTACTT width=8 seqs=11 chr7:129843587-129843667 ( 27) AATTACTT 1 chr21:38362382-38362462 ( 70) ACTTACTT 1 chr6:26209308-26209388 ( 2) AATTTCTT 1 chr6:15662833-15662913 ( 26) AGTTACTT 1 chr22:22401945-22402025 ( 63) AGTTAATT 1 chr1:201508224-201508304 ( 2) ACTTTGTT 1 chr1:111681955-111682035 ( 13) AATTTCCT 1 chr22:23382180-23382260 ( 9) ACTAAATT 1 chr14:103851888-10385196 ( 37) ACTTCCTT 1 chr22:22179285-22179365 ( 64) AATTAGCT 1 chr1:145073539-145073619 ( 62) ACTTACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTACTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 2.5e+001 285 -1010 -1010 -1010 140 31 -100 -1010 -1010 -1010 -1010 293 -60 -1010 -1010 279 220 -201 -1010 105 40 79 -100 -1010 -1010 -101 -1010 264 -1010 -201 -1010 279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTACTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.5e+001 1.000000 0.000000 0.000000 0.000000 0.363636 0.454545 0.181818 0.000000 0.000000 0.000000 0.000000 1.000000 0.090909 0.000000 0.000000 0.909091 0.636364 0.090909 0.000000 0.272727 0.181818 0.636364 0.181818 0.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.090909 0.000000 0.909091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMTTACTT MEME-2 regular expression -------------------------------------------------------------------------------- A[CA]TT[AT]CTT -------------------------------------------------------------------------------- Time 9.45 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRARTTT MEME-3 width = 8 sites = 8 llr = 86 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRARTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:494::: pos.-specific C ::::1::: probability G :a5:53:: matrix T ::11:8aa bits 2.9 * ** 2.6 * ** 2.3 * * ** 2.0 * * ** Relative 1.8 * * *** Entropy 1.5 ** * *** (15.6 bits) 1.2 ** * *** 0.9 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGGAGTTT consensus A AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRARTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:22874474-22874554 67 2.96e-07 CACCTCCGGG AGAAATTT GTCCAG chr6:26209308-26209388 15 2.13e-06 TTCTTTCTCC AGTAATTT TCCTTTTCTC chrX:136520449-136520529 50 4.18e-06 tgtcaaggcc aggagttt gagaccagcg chr22:22179285-22179365 5 4.18e-06 ggtc aggagttt gagaccagct chr22:21259892-21259972 39 8.29e-06 TGGAGGGAAA AGATGTTT CTCTCAGAAA chr19:38894209-38894289 6 1.04e-05 GGAGG AGGACTTT CTGCGGCAGC chr15:75230022-75230102 27 1.47e-05 TGGCACAGCC AGGAAGTT GCGCGGGGGG chr1:6453636-6453716 27 1.47e-05 CGCCGCTTCC AGAAGGTT CGGTGGCGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRARTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22874474-22874554 3e-07 66_[+3]_6 chr6:26209308-26209388 2.1e-06 14_[+3]_58 chrX:136520449-136520529 4.2e-06 49_[+3]_23 chr22:22179285-22179365 4.2e-06 4_[+3]_68 chr22:21259892-21259972 8.3e-06 38_[+3]_34 chr19:38894209-38894289 1e-05 5_[+3]_67 chr15:75230022-75230102 1.5e-05 26_[+3]_46 chr1:6453636-6453716 1.5e-05 26_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRARTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRARTTT width=8 seqs=8 chr22:22874474-22874554 ( 67) AGAAATTT 1 chr6:26209308-26209388 ( 15) AGTAATTT 1 chrX:136520449-136520529 ( 50) AGGAGTTT 1 chr22:22179285-22179365 ( 5) AGGAGTTT 1 chr22:21259892-21259972 ( 39) AGATGTTT 1 chr19:38894209-38894289 ( 6) AGGACTTT 1 chr15:75230022-75230102 ( 27) AGGAAGTT 1 chr1:6453636-6453716 ( 27) AGAAGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRARTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.4773 E= 1.3e+003 285 -965 -965 -965 -965 -965 146 -965 144 -965 46 -7 266 -965 -965 -7 144 -155 46 -965 -965 -965 -54 251 -965 -965 -965 293 -965 -965 -965 293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRARTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.3e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.500000 0.125000 0.875000 0.000000 0.000000 0.125000 0.375000 0.125000 0.500000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRARTTT MEME-3 regular expression -------------------------------------------------------------------------------- AG[GA]A[GA][TG]TT -------------------------------------------------------------------------------- Time 13.21 secs. ******************************************************************************** ******************************************************************************** MOTIF TWMATCTT MEME-4 width = 8 sites = 3 llr = 40 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWMATCTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :37a:3:: pos.-specific C ::3::7:: probability G :::::::: matrix T a7::a:aa bits 2.9 * ** ** 2.6 * ** ** 2.3 * ** ** 2.0 ** ** ** Relative 1.8 ** ** ** Entropy 1.5 ***** ** (19.0 bits) 1.2 ***** ** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTAATCTT consensus AC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWMATCTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:22139223-22139303 61 3.71e-07 ttttaagttt ttaatctt gtagagatgg chr6:26209308-26209388 55 4.78e-07 GAACAAACAA TAAATATT ATCCCTATTT chr1:145073539-145073619 43 1.75e-06 agGTCTACAG TTCATCTT TCTGTTACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWMATCTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22139223-22139303 3.7e-07 60_[+4]_12 chr6:26209308-26209388 4.8e-07 54_[+4]_18 chr1:145073539-145073619 1.7e-06 42_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWMATCTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWMATCTT width=8 seqs=3 chr22:22139223-22139303 ( 61) TTAATCTT 1 chr6:26209308-26209388 ( 55) TAAATATT 1 chr1:145073539-145073619 ( 43) TTCATCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWMATCTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 1.7e+003 -823 -823 -823 292 127 -823 -823 234 227 -14 -823 -823 285 -823 -823 -823 -823 -823 -823 292 127 86 -823 -823 -823 -823 -823 292 -823 -823 -823 292 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWMATCTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+003 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.000000 0.666667 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWMATCTT MEME-4 regular expression -------------------------------------------------------------------------------- T[TA][AC]AT[CA]TT -------------------------------------------------------------------------------- Time 16.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTTTCT MEME-5 width = 8 sites = 5 llr = 59 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTTTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa8:::a: probability G :::::::: matrix T ::2aaa:a bits 2.9 *** * 2.6 *** * 2.3 *** * 2.0 *** * Relative 1.8 *** * Entropy 1.5 ** ***** (17.1 bits) 1.2 ** ***** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCTTTCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:23162771-23162851 42 5.34e-06 caggtctatg ccctttct cagtgaggtt chr4:140097841-140097921 44 5.34e-06 gcgcgccTTC CCCTTTCT CCAAGTCCCG chr1:52608210-52608290 5 5.34e-06 TCAG CCCTTTCT CCCCGCGTCC chr19:14142642-14142722 63 5.34e-06 GCAGGGGCGC CCCTTTCT GGCTGTGGCC chr6:26209308-26209388 24 7.25e-06 CAGTAATTTT CCTTTTCT CCTGTAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:23162771-23162851 5.3e-06 41_[+5]_31 chr4:140097841-140097921 5.3e-06 43_[+5]_29 chr1:52608210-52608290 5.3e-06 4_[+5]_68 chr19:14142642-14142722 5.3e-06 62_[+5]_10 chr6:26209308-26209388 7.2e-06 23_[+5]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTTTCT width=8 seqs=5 chr22:23162771-23162851 ( 42) CCCTTTCT 1 chr4:140097841-140097921 ( 44) CCCTTTCT 1 chr1:52608210-52608290 ( 5) CCCTTTCT 1 chr19:14142642-14142722 ( 63) CCCTTTCT 1 chr6:26209308-26209388 ( 24) CCTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0849 E= 5.1e+003 -897 144 -897 -897 -897 144 -897 -897 -897 112 -897 61 -897 -897 -897 293 -897 -897 -897 293 -897 -897 -897 293 -897 144 -897 -897 -897 -897 -897 293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTTCT MEME-5 regular expression -------------------------------------------------------------------------------- CC[CT]TTTCT -------------------------------------------------------------------------------- Time 20.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:575656-575736 3.56e-01 80 chr10:76994721-76994801 9.92e-02 80 chr21:37529109-37529189 3.52e-01 80 chr7:148982311-148982391 6.64e-01 80 chr13:113344095-11334417 7.17e-01 80 chr10:15210412-15210492 9.08e-01 80 chr7:98972006-98972086 7.86e-01 80 chr4:37687823-37687903 9.85e-01 80 chr12:120426709-12042678 9.93e-01 80 chr7:73038722-73038802 9.73e-01 80 chr11:75526471-75526551 5.12e-01 80 chr1:45308800-45308880 6.25e-01 80 chr11:33722437-33722517 4.29e-01 80 chr19:54695183-54695263 2.79e-01 80 chr6:15662833-15662913 3.29e-05 25_[+2(3.55e-06)]_28_[+3(6.27e-05)]_\ [+2(2.47e-05)]_3 chr22:51021536-51021616 5.91e-01 80 chr1:46767825-46767905 3.45e-01 80 chr16:22217787-22217867 4.05e-01 80 chr1:169862503-169862583 9.18e-01 80 chr3:24563157-24563237 7.97e-01 80 chr2:64751739-64751819 7.52e-01 80 chr8:22298760-22298840 8.64e-01 80 chr1:111681955-111682035 1.63e-06 12_[+2(1.40e-05)]_60 chr7:106938746-106938826 2.89e-03 69_[+1(1.70e-05)]_3 chr17:54911664-54911744 1.00e+00 80 chr1:28286552-28286632 9.92e-01 80 chr3:150128045-150128125 1.35e-01 80 chr19:30156235-30156315 9.75e-01 80 chr5:76012029-76012109 6.12e-01 80 chr4:2965488-2965568 8.89e-01 80 chr1:153748360-153748440 8.97e-02 80 chr19:7985325-7985405 9.84e-01 80 chr1:78225425-78225505 9.42e-01 80 chr1:24194513-24194593 9.91e-01 80 chr3:129345775-129345855 9.44e-01 80 chr17:77771949-77772029 7.62e-01 80 chr17:1552746-1552826 8.88e-01 80 chr17:37910535-37910615 8.66e-01 80 chr16:2033753-2033833 3.36e-02 80 chr19:47951047-47951127 7.21e-01 80 chr5:134210271-134210351 3.19e-01 80 chr1:165797008-165797088 9.91e-01 80 chr19:10676570-10676650 2.20e-01 80 chr1:2574461-2574541 7.92e-01 80 chr6:157802192-157802272 3.26e-01 80 chr6:20212726-20212806 1.36e-02 80 chr22:22179285-22179365 4.82e-09 4_[+3(4.18e-06)]_43_[+1(2.52e-06)]_\ [+2(2.12e-05)]_9 chr7:148395797-148395877 3.41e-01 80 chr5:176513939-176514019 9.80e-01 80 chrX:152989771-152989851 1.99e-02 80 chr3:195163633-195163713 9.58e-01 80 chr20:32251369-32251449 9.34e-01 80 chr2:159314573-159314653 6.25e-01 80 chr15:90319804-90319884 8.52e-01 80 chr3:119395984-119396064 7.88e-01 80 chr1:23857345-23857425 3.50e-01 80 chr5:139555065-139555145 8.75e-01 80 chr2:219232544-219232624 8.80e-02 80 chr1:933727-933807 9.77e-01 80 chr22:22392359-22392439 8.76e-02 80 chr6:2989400-2989480 9.96e-01 80 chr8:126442911-126442991 1.00e+00 80 chrX:153775410-153775490 7.09e-01 80 chr2:65216430-65216510 1.55e-01 80 chr17:18266704-18266784 1.00e+00 80 chr1:27929867-27929947 9.94e-01 80 chr7:134855094-134855174 1.75e-01 80 chr17:76836341-76836421 6.53e-01 80 chr7:154795366-154795446 7.41e-01 80 chr7:90894065-90894145 9.31e-01 80 chr6:119216053-119216133 2.53e-01 80 chr16:2042090-2042170 8.78e-02 80 chr19:14142642-14142722 5.72e-02 62_[+5(5.34e-06)]_10 chr1:1168537-1168617 8.43e-01 80 chr6:154831522-154831602 1.00e+00 80 chr16:70285064-70285144 8.66e-01 80 chr1:62903104-62903184 8.40e-01 80 chr12:121975295-12197537 6.18e-01 80 chr8:124286503-124286583 8.06e-04 [+1(7.51e-06)]_72 chr22:23382180-23382260 7.97e-07 11_[+1(1.40e-05)]_32_[+1(7.51e-06)]_\ 21 chr20:62258605-62258685 5.86e-01 80 chr17:34091319-34091399 9.63e-01 80 chr3:12705242-12705322 6.52e-01 80 chr1:26146926-26147006 8.16e-01 80 chr21:34100160-34100240 7.92e-01 80 chr9:37903862-37903942 1.92e-01 80 chr22:18483833-18483913 8.80e-01 80 chrX:153991178-153991258 3.75e-01 80 chr22:23386971-23387051 6.07e-05 45_[+1(6.93e-06)]_27 chr7:44163124-44163204 8.56e-01 80 chr1:193074399-193074479 8.85e-01 80 chr7:128001845-128001925 9.24e-01 80 chr1:109419710-109419790 9.41e-01 80 chr16:2933155-2933235 6.96e-01 80 chr12:121163618-12116369 5.80e-01 80 chr10:75670974-75671054 9.95e-01 80 chr17:79455258-79455338 6.01e-01 80 chr1:22109405-22109485 7.28e-01 80 chr10:60094947-60095027 4.99e-02 80 chr18:11980764-11980844 5.43e-01 80 chr15:83378515-83378595 9.26e-01 80 chr1:100818238-100818318 5.02e-01 80 chr5:34007987-34008067 5.13e-01 80 chr20:39765616-39765696 5.29e-02 80 chr14:23771543-23771623 9.88e-01 80 chr9:123963595-123963675 4.18e-01 80 chr16:88729315-88729395 9.61e-01 80 chrX:150067145-150067225 7.82e-01 80 chr5:176924558-176924638 5.68e-01 80 chr17:72978402-72978482 2.45e-01 80 chr19:38894209-38894289 1.13e-03 5_[+3(1.04e-05)]_67 chr22:21271885-21271965 9.95e-01 80 chr7:128045862-128045942 2.23e-01 80 chr11:61659172-61659252 1.00e+00 80 chr8:143820771-143820851 1.50e-01 80 chr7:97736472-97736552 9.84e-01 80 chr2:46524160-46524240 9.81e-01 80 chr6:32163575-32163655 7.66e-01 80 chr11:125757937-12575801 5.82e-02 1_[+5(4.21e-05)]_71 chr9:130693062-130693142 2.45e-01 80 chr7:129074364-129074444 9.35e-01 80 chr1:902066-902146 8.53e-01 80 chr6:149887609-149887689 9.97e-01 80 chr3:9904483-9904563 4.15e-01 80 chr1:180992008-180992088 1.00e+00 80 chr4:925945-926025 9.99e-01 80 chr2:74730366-74730446 9.64e-01 80 chr14:105487152-10548723 9.99e-01 80 chr7:140178750-140178830 9.82e-01 80 chr19:17000808-17000888 9.52e-01 80 chr16:84150507-84150587 9.86e-01 80 chr1:1509778-1509858 9.99e-01 80 chr22:22139223-22139303 9.28e-10 7_[+3(3.66e-05)]_33_[+1(2.19e-07)]_\ 4_[+4(3.71e-07)]_12 chr11:118662533-11866261 9.96e-01 80 chr17:2296827-2296907 1.41e-02 80 chr14:103851888-10385196 3.40e-03 36_[+2(1.96e-05)]_36 chr1:41707657-41707737 9.08e-02 80 chr5:176882637-176882717 8.95e-01 80 chr1:6453636-6453716 7.10e-02 26_[+3(1.47e-05)]_46 chr16:4526457-4526537 3.99e-01 80 chr19:17650037-17650117 8.70e-01 80 chr7:150020505-150020585 5.42e-01 80 chr17:78388754-78388834 9.92e-01 80 chr22:22874474-22874554 2.16e-07 2_[+2(8.11e-05)]_56_[+3(2.96e-07)]_\ 6 chr7:155437461-155437541 3.99e-01 80 chr7:72992895-72992975 8.89e-01 80 chr1:28586352-28586432 5.04e-01 80 chr7:151038805-151038885 8.25e-02 60_[+1(5.33e-06)]_12 chrX:136520449-136520529 1.26e-03 49_[+3(4.18e-06)]_23 chr7:150076182-150076262 9.72e-01 80 chr20:37377214-37377294 7.18e-01 80 chr1:26232313-26232393 4.46e-01 80 chr8:22462470-22462550 3.37e-01 80 chr7:65540743-65540823 9.97e-01 80 chr1:47903166-47903246 6.58e-03 10_[+2(9.24e-05)]_62 chr12:104609789-10460986 9.94e-01 80 chr7:73589063-73589143 9.92e-01 80 chr15:22892364-22892444 2.61e-01 80 chr11:117857017-11785709 1.00e+00 80 chr11:71159413-71159493 8.55e-01 80 chr22:22090536-22090616 9.87e-01 80 chr10:1094861-1094941 1.00e+00 80 chr2:127413909-127413989 1.00e+00 80 chr3:87841871-87841951 5.61e-01 80 chr21:43373585-43373665 9.14e-01 80 chr10:1102543-1102623 5.76e-01 80 chr15:75230022-75230102 4.90e-03 26_[+3(1.47e-05)]_46 chr1:26437650-26437730 6.16e-01 80 chr7:148845172-148845252 4.09e-02 80 chr9:140335983-140336063 8.27e-01 80 chr15:52029898-52029978 2.18e-02 [+4(5.41e-05)]_72 chr17:46178687-46178767 7.44e-01 80 chr9:101984051-101984131 9.83e-01 80 chr8:27168469-27168549 1.10e-01 80 chr22:21922198-21922278 9.59e-01 80 chr3:12917617-12917697 2.53e-01 80 chr11:77301025-77301105 8.15e-01 80 chr10:13341972-13342052 4.08e-01 80 chr5:142149938-142150018 7.90e-01 80 chr1:212458749-212458829 1.19e-01 80 chr8:61429607-61429687 3.65e-01 80 chr2:171133977-171134057 7.26e-04 68_[+1(3.47e-06)]_4 chr9:35071938-35072018 8.85e-01 80 chr4:56502319-56502399 6.93e-01 80 chr19:13264576-13264656 8.60e-01 80 chr22:22401945-22402025 1.52e-08 62_[+2(4.10e-06)]_[+1(2.52e-06)]_2 chr6:170893319-170893399 5.10e-02 80 chr1:161696669-161696749 1.32e-01 80 chr1:52608210-52608290 7.06e-03 4_[+5(5.34e-06)]_68 chr4:3294179-3294259 6.27e-01 80 chr1:234744534-234744614 8.78e-01 80 chr20:47663357-47663437 9.99e-01 80 chr6:26209308-26209388 3.92e-14 1_[+2(1.42e-06)]_5_[+3(2.13e-06)]_1_\ [+5(7.25e-06)]_5_[+1(1.17e-05)]_10_[+4(4.78e-07)]_6_[+1(3.70e-05)]_4 chr21:44313402-44313482 5.86e-01 80 chr19:36036437-36036517 1.90e-01 80 chr4:187112512-187112592 9.03e-01 80 chr4:140097841-140097921 2.86e-03 43_[+5(5.34e-06)]_29 chr3:5020021-5020101 8.75e-01 80 chr2:97482103-97482183 6.98e-01 80 chr1:145073539-145073619 3.81e-08 3_[+1(2.31e-05)]_31_[+4(1.75e-06)]_\ 11_[+2(2.79e-05)]_11 chr21:38362382-38362462 1.30e-03 69_[+2(1.42e-06)]_3 chr22:23162771-23162851 1.02e-05 17_[+1(3.51e-05)]_16_[+5(5.34e-06)]_\ 31 chr8:145137528-145137608 5.92e-01 80 chr6:44187257-44187337 9.79e-01 80 chr9:132597708-132597788 8.26e-01 80 chr1:3541376-3541456 6.60e-01 80 chr11:3818639-3818719 7.42e-02 80 chr1:2323123-2323203 8.83e-01 80 chr8:37756764-37756844 3.74e-01 80 chr7:76022803-76022883 8.17e-01 80 chr2:133015246-133015326 9.82e-01 80 chr1:201508224-201508304 2.41e-03 1_[+2(8.00e-06)]_71 chr17:64299267-64299347 9.01e-01 80 chr14:105219411-10521949 6.58e-01 80 chr9:116163625-116163705 9.02e-01 80 chr7:156433060-156433140 6.72e-01 80 chr12:3862301-3862381 9.99e-01 80 chr11:47788660-47788740 9.99e-01 80 chr3:48130408-48130488 6.59e-01 80 chr6:43337448-43337528 3.93e-02 80 chr2:27593006-27593086 9.58e-01 80 chr1:151584753-151584833 8.35e-01 80 chr3:47517419-47517499 2.09e-01 80 chr1:206808974-206809054 8.49e-01 80 chr2:38152498-38152578 4.12e-01 80 chr21:38338530-38338610 8.29e-01 80 chr22:21259892-21259972 1.92e-06 38_[+3(8.29e-06)]_8_[+1(4.73e-06)]_\ 18 chr15:40803955-40804035 2.86e-01 80 chr15:41056215-41056295 9.93e-01 80 chr2:232790824-232790904 9.79e-01 80 chr9:95527386-95527466 9.36e-01 80 chr10:72164101-72164181 7.57e-01 80 chr1:172502097-172502177 2.13e-01 80 chr21:34100363-34100443 8.19e-01 80 chr4:56413148-56413228 7.11e-01 80 chr22:22909945-22910025 5.52e-03 61_[+3(9.69e-05)]_11 chr17:80455011-80455091 9.49e-01 80 chr1:228290736-228290816 4.61e-01 80 chr12:42538601-42538681 8.34e-01 80 chr9:139760748-139760828 4.89e-01 80 chr7:129843587-129843667 4.26e-08 7_[+1(5.96e-06)]_11_[+2(2.84e-07)]_\ 46 chr16:81129964-81130044 9.93e-01 80 chrX:152864842-152864922 1.00e+00 80 chr2:131130081-131130161 5.35e-01 80 chr1:167691299-167691379 3.79e-01 80 chr2:183580952-183581032 5.29e-01 80 chr1:227058629-227058709 2.72e-01 18_[+2(9.24e-05)]_54 chr7:148787731-148787811 3.92e-01 80 chr16:67562926-67563006 4.73e-02 80 chr22:21271650-21271730 8.91e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************