******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM25.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:132313326-13231340 1.0000 80 chr6:21955565-21955645 1.0000 80 chr19:6935813-6935893 1.0000 80 chr3:37802671-37802751 1.0000 80 chr22:43739382-43739462 1.0000 80 chr4:26596655-26596735 1.0000 80 chr13:52531012-52531092 1.0000 80 chr3:154463081-154463161 1.0000 80 chr10:102430915-10243099 1.0000 80 chr6:164239904-164239984 1.0000 80 chr6:136935630-136935710 1.0000 80 chr6:151768557-151768637 1.0000 80 chr4:38328920-38329000 1.0000 80 chr11:34861659-34861739 1.0000 80 chr2:178568061-178568141 1.0000 80 chr7:130592439-130592519 1.0000 80 chr6:107275149-107275229 1.0000 80 chr19:972389-972469 1.0000 80 chr4:185290059-185290139 1.0000 80 chr16:21201508-21201588 1.0000 80 chr16:86306499-86306579 1.0000 80 chr17:31440787-31440867 1.0000 80 chr16:15576765-15576845 1.0000 80 chr1:30982709-30982789 1.0000 80 chr15:64203523-64203603 1.0000 80 chr18:32677934-32678014 1.0000 80 chr2:16921199-16921279 1.0000 80 chr16:13996087-13996167 1.0000 80 chr7:151327585-151327665 1.0000 80 chr6:17878467-17878547 1.0000 80 chr1:68234297-68234377 1.0000 80 chr2:152626286-152626366 1.0000 80 chr8:86971020-86971100 1.0000 80 chr3:170868880-170868960 1.0000 80 chr6:83451211-83451291 1.0000 80 chr12:71080847-71080927 1.0000 80 chr7:116281967-116282047 1.0000 80 chr6:16282719-16282799 1.0000 80 chr7:99224420-99224500 1.0000 80 chr9:123655236-123655316 1.0000 80 chr16:20122633-20122713 1.0000 80 chr21:45662518-45662598 1.0000 80 chr8:26051493-26051573 1.0000 80 chr2:208293443-208293523 1.0000 80 chr9:136344275-136344355 1.0000 80 chr11:11643593-11643673 1.0000 80 chr15:29256460-29256540 1.0000 80 chr3:49447698-49447778 1.0000 80 chr12:111124508-11112458 1.0000 80 chr2:65249497-65249577 1.0000 80 chr2:20811908-20811988 1.0000 80 chr1:158698464-158698544 1.0000 80 chrX:129309053-129309133 1.0000 80 chr7:133872804-133872884 1.0000 80 chr12:11920113-11920193 1.0000 80 chr22:29703248-29703328 1.0000 80 chr12:76497919-76497999 1.0000 80 chr11:73492526-73492606 1.0000 80 chr17:77927300-77927380 1.0000 80 chr17:35785528-35785608 1.0000 80 chr20:51808673-51808753 1.0000 80 chr16:8768378-8768458 1.0000 80 chr16:55086409-55086489 1.0000 80 chr1:61735944-61736024 1.0000 80 chr22:30724219-30724299 1.0000 80 chr20:17906716-17906796 1.0000 80 chr12:114667098-11466717 1.0000 80 chr5:125874421-125874501 1.0000 80 chr9:101864243-101864323 1.0000 80 chr9:125024555-125024635 1.0000 80 chr5:90608668-90608748 1.0000 80 chr12:93894136-93894216 1.0000 80 chr9:129305932-129306012 1.0000 80 chr12:127674696-12767477 1.0000 80 chr2:220339222-220339302 1.0000 80 chr12:114042649-11404272 1.0000 80 chr7:2443452-2443532 1.0000 80 chr3:12784328-12784408 1.0000 80 chrX:30281039-30281119 1.0000 80 chrX:117897614-117897694 1.0000 80 chr7:73632780-73632860 1.0000 80 chr3:71302474-71302554 1.0000 80 chr4:75197821-75197901 1.0000 80 chr6:157875163-157875243 1.0000 80 chr19:1450000-1450080 1.0000 80 chr7:86697260-86697340 1.0000 80 chr16:22231166-22231246 1.0000 80 chr1:17445946-17446026 1.0000 80 chr6:158386577-158386657 1.0000 80 chr17:40834186-40834266 1.0000 80 chr10:63556680-63556760 1.0000 80 chr21:35389757-35389837 1.0000 80 chr11:32441865-32441945 1.0000 80 chr19:1812115-1812195 1.0000 80 chr4:140410952-140411032 1.0000 80 chr1:14975875-14975955 1.0000 80 chr21:31121733-31121813 1.0000 80 chr16:27562003-27562083 1.0000 80 chr9:95821084-95821164 1.0000 80 chr18:53261312-53261392 1.0000 80 chrX:3631346-3631426 1.0000 80 chr6:15899090-15899170 1.0000 80 chr3:24406018-24406098 1.0000 80 chr5:5703197-5703277 1.0000 80 chr5:145322468-145322548 1.0000 80 chr1:15135381-15135461 1.0000 80 chr3:171555607-171555687 1.0000 80 chr12:53770690-53770770 1.0000 80 chr11:45854766-45854846 1.0000 80 chr6:13633733-13633813 1.0000 80 chr5:137443083-137443163 1.0000 80 chr5:173123354-173123434 1.0000 80 chr19:35710063-35710143 1.0000 80 chr17:48637960-48638040 1.0000 80 chr4:6271455-6271535 1.0000 80 chr6:130071781-130071861 1.0000 80 chr5:145087900-145087980 1.0000 80 chr7:139683231-139683311 1.0000 80 chr16:23940707-23940787 1.0000 80 chr11:20048345-20048425 1.0000 80 chr1:117236487-117236567 1.0000 80 chr11:69212630-69212710 1.0000 80 chr16:84293451-84293531 1.0000 80 chr8:48175659-48175739 1.0000 80 chr20:34360200-34360280 1.0000 80 chrX:1571753-1571833 1.0000 80 chr8:41653678-41653758 1.0000 80 chr16:81788599-81788679 1.0000 80 chr1:54204928-54205008 1.0000 80 chr1:226712401-226712481 1.0000 80 chr3:72203689-72203769 1.0000 80 chr11:18380314-18380394 1.0000 80 chr9:131962709-131962789 1.0000 80 chr1:59396847-59396927 1.0000 80 chr22:36937905-36937985 1.0000 80 chr7:75364572-75364652 1.0000 80 chr6:148065304-148065384 1.0000 80 chr13:107188053-10718813 1.0000 80 chr4:81049328-81049408 1.0000 80 chr6:4168200-4168280 1.0000 80 chr17:43955033-43955113 1.0000 80 chr7:3083335-3083415 1.0000 80 chr8:94754475-94754555 1.0000 80 chr16:26727437-26727517 1.0000 80 chr17:62380069-62380149 1.0000 80 chr3:152781305-152781385 1.0000 80 chr5:89932910-89932990 1.0000 80 chr19:35869458-35869538 1.0000 80 chr9:129699876-129699956 1.0000 80 chr17:27569246-27569326 1.0000 80 chr12:102246945-10224702 1.0000 80 chr3:171096502-171096582 1.0000 80 chr3:184289913-184289993 1.0000 80 chr5:173309835-173309915 1.0000 80 chr6:47208192-47208272 1.0000 80 chr20:44614827-44614907 1.0000 80 chr1:204674070-204674150 1.0000 80 chr17:17595748-17595828 1.0000 80 chr1:183958887-183958967 1.0000 80 chr19:13388048-13388128 1.0000 80 chr5:134493538-134493618 1.0000 80 chr9:37301936-37302016 1.0000 80 chr11:45843905-45843985 1.0000 80 chr11:36149284-36149364 1.0000 80 chr1:201558436-201558516 1.0000 80 chr10:135186893-13518697 1.0000 80 chr11:12210273-12210353 1.0000 80 chr11:46230523-46230603 1.0000 80 chrX:106918529-106918609 1.0000 80 chr1:201647527-201647607 1.0000 80 chr1:895967-896047 1.0000 80 chr1:149855599-149855679 1.0000 80 chr2:20707627-20707707 1.0000 80 chr8:68991649-68991729 1.0000 80 chr12:71002170-71002250 1.0000 80 chr4:13528447-13528527 1.0000 80 chr11:45848821-45848901 1.0000 80 chr20:591029-591109 1.0000 80 chr19:16677678-16677758 1.0000 80 chr19:3364633-3364713 1.0000 80 chr9:108457696-108457776 1.0000 80 chr7:856173-856253 1.0000 80 chr5:54049709-54049789 1.0000 80 chr6:106893529-106893609 1.0000 80 chr6:17866743-17866823 1.0000 80 chr12:111845998-11184607 1.0000 80 chr13:20532759-20532839 1.0000 80 chr9:123838083-123838163 1.0000 80 chr21:36396514-36396594 1.0000 80 chr19:4238954-4239034 1.0000 80 chr20:45827165-45827245 1.0000 80 chr12:24864671-24864751 1.0000 80 chr19:45539165-45539245 1.0000 80 chr1:41159314-41159394 1.0000 80 chr6:35698691-35698771 1.0000 80 chr3:12737596-12737676 1.0000 80 chr6:71553177-71553257 1.0000 80 chr19:48111951-48112031 1.0000 80 chr3:152362426-152362506 1.0000 80 chr5:180248708-180248788 1.0000 80 chr19:17635589-17635669 1.0000 80 chr10:63582003-63582083 1.0000 80 chr3:100211337-100211417 1.0000 80 chr6:12014364-12014444 1.0000 80 chr11:36214684-36214764 1.0000 80 chr16:25783718-25783798 1.0000 80 chr1:25868130-25868210 1.0000 80 chr1:18571412-18571492 1.0000 80 chr15:67093726-67093806 1.0000 80 chr3:4697120-4697200 1.0000 80 chr15:64194631-64194711 1.0000 80 chr12:112857736-11285781 1.0000 80 chr6:34546592-34546672 1.0000 80 chr7:13030249-13030329 1.0000 80 chr16:27278683-27278763 1.0000 80 chr8:126555736-126555816 1.0000 80 chr14:81902812-81902892 1.0000 80 chr12:117536917-11753699 1.0000 80 chr1:39280974-39281054 1.0000 80 chr11:88013973-88014053 1.0000 80 chr3:57261670-57261750 1.0000 80 chr16:4743571-4743651 1.0000 80 chr5:76019218-76019298 1.0000 80 chr9:140446289-140446369 1.0000 80 chr1:11125204-11125284 1.0000 80 chr3:4261002-4261082 1.0000 80 chr19:19554816-19554896 1.0000 80 chr4:56221873-56221953 1.0000 80 chr9:135141557-135141637 1.0000 80 chr2:172737424-172737504 1.0000 80 chr14:78104290-78104370 1.0000 80 chr11:60493238-60493318 1.0000 80 chr12:121379388-12137946 1.0000 80 chr7:75361424-75361504 1.0000 80 chr4:10462187-10462267 1.0000 80 chr16:11254673-11254753 1.0000 80 chr1:212462721-212462801 1.0000 80 chr14:24739835-24739915 1.0000 80 chr8:139846812-139846892 1.0000 80 chr1:46955417-46955497 1.0000 80 chr20:17662967-17663047 1.0000 80 chr12:113973052-11397313 1.0000 80 chr13:73633012-73633092 1.0000 80 chr1:117044630-117044710 1.0000 80 chr17:39679311-39679391 1.0000 80 chr5:172192899-172192979 1.0000 80 chr16:10980605-10980685 1.0000 80 chr20:22387974-22388054 1.0000 80 chr12:93735366-93735446 1.0000 80 chr10:97803214-97803294 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RBM25/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM25.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.262 C 0.238 G 0.244 T 0.256 Background letter frequencies (from file dataset with add-one prior applied): A 0.262 C 0.238 G 0.244 T 0.256 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCCAKTTT MEME-1 width = 8 sites = 95 llr = 762 E-value = 1.7e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAKTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 87a::::1 probability G ::::3:1: matrix T 13::6a98 bits 2.1 * 1.9 ** * 1.7 ** * 1.4 ** * Relative 1.2 * ** ** Entropy 1.0 **** *** (11.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCATTTT consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAKTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:93735366-93735446 4 1.52e-05 ggc cccatttt atagatgagg chr1:117044630-117044710 14 1.52e-05 tactatttcc cccatttt acagatgatg chr14:24739835-24739915 26 1.52e-05 aattattagc cccatttt acagatgagc chr1:212462721-212462801 23 1.52e-05 ggtcagtatt cccatttt attgatgaga chr19:19554816-19554896 29 1.52e-05 gggtgctgtt cccatttt acaggtgagg chr3:4261002-4261082 1 1.52e-05 . cccatttt acagatgagg chr15:67093726-67093806 60 1.52e-05 taatgttatg cccatttt acagatgatg chr21:36396514-36396594 43 1.52e-05 ggctggagca cccatttt gagccatgag chr6:106893529-106893609 18 1.52e-05 atttatcact cccatttt gcagatgaag chr12:71002170-71002250 8 1.52e-05 taacact cccatttt acagataaga chr1:201647527-201647607 44 1.52e-05 tgctcttgtc cccatttt acagatgagg chr6:47208192-47208272 8 1.52e-05 tatcagc cccatttt acagatgagg chr3:184289913-184289993 18 1.52e-05 tccaagcagc cccatttt acagatgaca chr3:171096502-171096582 37 1.52e-05 aatatctcta cccatttt acagaagagc chr11:18380314-18380394 43 1.52e-05 gctattggta cccatttt atagatttgg chr6:13633733-13633813 11 1.52e-05 cgttattata cccatttt acagatgaag chr2:220339222-220339302 2 1.52e-05 c cccatttt acagatgagg chr22:30724219-30724299 16 1.52e-05 cattattagt cccatttt acagttaagg chr17:35785528-35785608 21 1.52e-05 gattagtatc cccatttt atagatgaag chr12:76497919-76497999 17 1.52e-05 tgttatcatt cccatttt agagatgagg chrX:129309053-129309133 43 1.52e-05 tgttatcatt cccatttt atagataagg chr7:116281967-116282047 7 1.52e-05 attata cccatttt gcagatgaag chr8:86971020-86971100 2 1.52e-05 t cccatttt acagataagg chr16:15576765-15576845 7 1.52e-05 attata cccatttt acagatatgg chr6:136935630-136935710 48 1.52e-05 tattggtatg cccatttt acagatgagg chr8:48175659-48175739 10 4.59e-05 accattagt ctcatttt atggatgagg chr11:88013973-88014053 50 6.15e-05 tctactgaac ctcagttt tcctatctgt chr1:39280974-39281054 33 6.15e-05 ctctctgacc ctcagttt cttccactgt chr12:111845998-11184607 21 6.15e-05 actgccccac ctcagttt cctcatctgt chr6:17866743-17866823 19 6.15e-05 ttcgctaaac ctcagttt tcttatctgt chr5:54049709-54049789 61 6.15e-05 ctgtctggat ctcagttt ccacatctgt chr12:102246945-10224702 23 6.15e-05 atttctaagt ctcagttt cctcatgtgt chr8:94754475-94754555 12 6.15e-05 ccctctgtgc ctcagttt cttcatctgt chr4:81049328-81049408 55 6.15e-05 gtttcagtac ctcagttt tcctatcttt chr16:23940707-23940787 60 6.15e-05 ctctctgagc ctcagttt tctcatctgt chr6:130071781-130071861 8 6.15e-05 cttaagc ctcagttt tctcatccat chr12:53770690-53770770 56 6.15e-05 atatctgagc ctcagttt tctcatctgt chr3:171555607-171555687 38 6.15e-05 atttcagaac ctcagttt caccatctgt chr5:145322468-145322548 64 6.15e-05 ctctctgatc ctcagttt ctagactta chr11:32441865-32441945 11 6.15e-05 ctccctgccc ctcagttt tctcatctgt chr4:75197821-75197901 32 6.15e-05 ctctcttcac ctcagttt cttcattcat chr5:125874421-125874501 55 6.15e-05 ctctctgtgc ctcagttt ccaaatcaat chr12:114667098-11466717 71 6.15e-05 ctctctgtgc ctcagttt ac chr20:17906716-17906796 49 6.15e-05 ttccctgaac ctcagttt attcatctgt chr12:11920113-11920193 43 6.15e-05 acctcccagc ctcagttt ccttatctct chr1:158698464-158698544 31 6.15e-05 aaactatact ctcagttt cctcatctgt chr3:49447698-49447778 31 6.15e-05 gtctctggga ctcagttt gctcatctgc chr9:123655236-123655316 56 6.15e-05 ctctcttagc ctcagttt cctcgtctgt chr18:32677934-32678014 29 6.15e-05 aattctgagt ctcagttt acccatctgt chr12:113973052-11397313 44 7.56e-05 agtacagttg cccatttc acagattggc chr9:37301936-37302016 31 7.56e-05 atactattat cccatttc acaggtcaga chr1:59396847-59396927 43 7.56e-05 tattatgatc cccatttc tctgatgggt chr8:41653678-41653758 39 7.56e-05 TCACAGCAGA cccatttc ccagacaaga chr1:15135381-15135461 66 7.56e-05 acatcataaa cccatttc caaagca chr9:95821084-95821164 69 7.56e-05 GGGCTCTGCG CCCATTTC ACAG chr21:35389757-35389837 2 7.56e-05 t cccatttc ttctccctgg chr6:151768557-151768637 6 7.56e-05 ATGAT cccatttc actgattagg chr12:132313326-13231340 3 7.56e-05 GA CCCATTTC CTGGGTGGGG chr16:11254673-11254753 56 9.19e-05 agccattgca tccatttt ccaggaagca chr11:45854766-45854846 17 9.19e-05 gattactatc tccatttt atagataagg chr16:27562003-27562083 55 9.19e-05 tcagcgttgt tccatttt acagatgatg chr7:86697260-86697340 46 9.19e-05 tactcttatc tccatttt acagatgagc chr7:73632780-73632860 5 9.19e-05 AGCT TCCATTTT CAAGAGcacc chr1:61735944-61736024 15 9.19e-05 cagtagtgtc tccatttt acagatgaag chr7:99224420-99224500 12 9.19e-05 GAGTGTACAA Tccatttt gaaggtggtg chr6:16282719-16282799 24 9.19e-05 aacttgtttt tccatttt tatagctgtg chr2:16921199-16921279 6 9.19e-05 ttctt tccatttt atgcaggaag chr1:18571412-18571492 49 1.21e-04 ctctctgtgc tccagttt cctcatctca chrX:106918529-106918609 65 1.21e-04 ctctctgagc tccagttt ctgcgtct chr12:112857736-11285781 67 1.35e-04 tactattatc cccattgt aaagat chr5:137443083-137443163 47 1.35e-04 agcaaacttc cccattgt cacagagcta chr6:164239904-164239984 37 1.51e-04 catgaaagtg ctcatttc cccacatctg chr9:129699876-129699956 34 1.82e-04 tgcctcctga cccagtgt ggttgcttga chr8:126555736-126555816 25 2.12e-04 tctcgtaagc ctcagttc ccttatctgt chr20:45827165-45827245 3 2.12e-04 gc cccattta acagagggtg chr9:123838083-123838163 10 2.12e-04 gttatcatc cccattta aaaagtgata chr9:125024555-125024635 33 2.12e-04 agctgttggc ctcagttc cctcatctgt chr1:68234297-68234377 50 2.12e-04 tgatatgatg cccattta acagatgagg chr15:29256460-29256540 32 2.29e-04 gtatggatga ttcagttt ctccacatcc chr19:3364633-3364713 2 2.60e-04 a gccatttt acagatgagg chr4:26596655-26596735 5 2.60e-04 ctgt gccatttt gcattcccac chr22:36937905-36937985 16 3.04e-04 gatcactacc cccattct gcagatgagg chr10:63556680-63556760 43 3.04e-04 gttttaaatg cccattct acagactaac chr5:173123354-173123434 26 3.19e-04 taaaattatg cccattat cctgatgagg chr3:12784328-12784408 47 3.19e-04 acctacccca cccattat acagataagg chr10:63582003-63582083 8 3.49e-04 tttttac ctcagtgt cctcatctga chr6:35698691-35698771 55 3.49e-04 acctctctga gccagttt cttcgtctgt chr8:68991649-68991729 37 3.94e-04 ttttattgcc cccacttt acagatgagg chr4:13528447-13528527 17 4.53e-04 tatcactgca cccaattt acagatgagc chr16:81788599-81788679 21 4.53e-04 tctctgagcc cccattgc ctgatctgtc chr3:37802671-37802751 41 4.84e-04 attgttaaga tccattgt tggttaagat chr16:27278683-27278763 33 5.45e-04 ggtcactgac cccatctt acagatgagg chr6:15899090-15899170 50 5.45e-04 GAtctttggc ctcagtta cttaacctgt chr16:26727437-26727517 7 6.07e-04 tcctcc cctatttt atagagaagg chr9:129305932-129306012 34 6.07e-04 aatgctaaca cccagtgc tggtgagttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAKTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:93735366-93735446 1.5e-05 3_[+1]_69 chr1:117044630-117044710 1.5e-05 13_[+1]_59 chr14:24739835-24739915 1.5e-05 25_[+1]_47 chr1:212462721-212462801 1.5e-05 22_[+1]_50 chr19:19554816-19554896 1.5e-05 28_[+1]_44 chr3:4261002-4261082 1.5e-05 [+1]_72 chr15:67093726-67093806 1.5e-05 59_[+1]_13 chr21:36396514-36396594 1.5e-05 42_[+1]_30 chr6:106893529-106893609 1.5e-05 17_[+1]_55 chr12:71002170-71002250 1.5e-05 7_[+1]_65 chr1:201647527-201647607 1.5e-05 43_[+1]_29 chr6:47208192-47208272 1.5e-05 7_[+1]_65 chr3:184289913-184289993 1.5e-05 17_[+1]_55 chr3:171096502-171096582 1.5e-05 36_[+1]_36 chr11:18380314-18380394 1.5e-05 42_[+1]_30 chr6:13633733-13633813 1.5e-05 10_[+1]_62 chr2:220339222-220339302 1.5e-05 1_[+1]_71 chr22:30724219-30724299 1.5e-05 15_[+1]_57 chr17:35785528-35785608 1.5e-05 20_[+1]_52 chr12:76497919-76497999 1.5e-05 16_[+1]_56 chrX:129309053-129309133 1.5e-05 42_[+1]_30 chr7:116281967-116282047 1.5e-05 6_[+1]_66 chr8:86971020-86971100 1.5e-05 1_[+1]_71 chr16:15576765-15576845 1.5e-05 6_[+1]_66 chr6:136935630-136935710 1.5e-05 47_[+1]_25 chr8:48175659-48175739 4.6e-05 9_[+1]_63 chr11:88013973-88014053 6.1e-05 49_[+1]_23 chr1:39280974-39281054 6.1e-05 32_[+1]_40 chr12:111845998-11184607 6.1e-05 20_[+1]_52 chr6:17866743-17866823 6.1e-05 18_[+1]_54 chr5:54049709-54049789 6.1e-05 60_[+1]_12 chr12:102246945-10224702 6.1e-05 22_[+1]_50 chr8:94754475-94754555 6.1e-05 11_[+1]_61 chr4:81049328-81049408 6.1e-05 54_[+1]_18 chr16:23940707-23940787 6.1e-05 59_[+1]_13 chr6:130071781-130071861 6.1e-05 7_[+1]_65 chr12:53770690-53770770 6.1e-05 55_[+1]_17 chr3:171555607-171555687 6.1e-05 37_[+1]_35 chr5:145322468-145322548 6.1e-05 63_[+1]_9 chr11:32441865-32441945 6.1e-05 10_[+1]_62 chr4:75197821-75197901 6.1e-05 31_[+1]_41 chr5:125874421-125874501 6.1e-05 54_[+1]_18 chr12:114667098-11466717 6.1e-05 70_[+1]_2 chr20:17906716-17906796 6.1e-05 48_[+1]_24 chr12:11920113-11920193 6.1e-05 42_[+1]_30 chr1:158698464-158698544 6.1e-05 30_[+1]_42 chr3:49447698-49447778 6.1e-05 30_[+1]_42 chr9:123655236-123655316 6.1e-05 55_[+1]_17 chr18:32677934-32678014 6.1e-05 28_[+1]_44 chr12:113973052-11397313 7.6e-05 43_[+1]_29 chr9:37301936-37302016 7.6e-05 30_[+1]_42 chr1:59396847-59396927 7.6e-05 42_[+1]_30 chr8:41653678-41653758 7.6e-05 38_[+1]_34 chr1:15135381-15135461 7.6e-05 65_[+1]_7 chr9:95821084-95821164 7.6e-05 68_[+1]_4 chr21:35389757-35389837 7.6e-05 1_[+1]_71 chr6:151768557-151768637 7.6e-05 5_[+1]_67 chr12:132313326-13231340 7.6e-05 2_[+1]_70 chr16:11254673-11254753 9.2e-05 55_[+1]_17 chr11:45854766-45854846 9.2e-05 16_[+1]_56 chr16:27562003-27562083 9.2e-05 54_[+1]_18 chr7:86697260-86697340 9.2e-05 45_[+1]_27 chr7:73632780-73632860 9.2e-05 4_[+1]_68 chr1:61735944-61736024 9.2e-05 14_[+1]_58 chr7:99224420-99224500 9.2e-05 11_[+1]_61 chr6:16282719-16282799 9.2e-05 23_[+1]_49 chr2:16921199-16921279 9.2e-05 5_[+1]_67 chr1:18571412-18571492 0.00012 48_[+1]_24 chrX:106918529-106918609 0.00012 64_[+1]_8 chr12:112857736-11285781 0.00014 66_[+1]_6 chr5:137443083-137443163 0.00014 46_[+1]_26 chr6:164239904-164239984 0.00015 36_[+1]_36 chr9:129699876-129699956 0.00018 33_[+1]_39 chr8:126555736-126555816 0.00021 24_[+1]_48 chr20:45827165-45827245 0.00021 2_[+1]_70 chr9:123838083-123838163 0.00021 9_[+1]_63 chr9:125024555-125024635 0.00021 32_[+1]_40 chr1:68234297-68234377 0.00021 49_[+1]_23 chr15:29256460-29256540 0.00023 31_[+1]_41 chr19:3364633-3364713 0.00026 1_[+1]_71 chr4:26596655-26596735 0.00026 4_[+1]_68 chr22:36937905-36937985 0.0003 15_[+1]_57 chr10:63556680-63556760 0.0003 42_[+1]_30 chr5:173123354-173123434 0.00032 25_[+1]_47 chr3:12784328-12784408 0.00032 46_[+1]_26 chr10:63582003-63582083 0.00035 7_[+1]_65 chr6:35698691-35698771 0.00035 54_[+1]_18 chr8:68991649-68991729 0.00039 36_[+1]_36 chr4:13528447-13528527 0.00045 16_[+1]_56 chr16:81788599-81788679 0.00045 20_[+1]_52 chr3:37802671-37802751 0.00048 40_[+1]_32 chr16:27278683-27278763 0.00055 32_[+1]_40 chr6:15899090-15899170 0.00055 49_[+1]_23 chr16:26727437-26727517 0.00061 6_[+1]_66 chr9:129305932-129306012 0.00061 33_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAKTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAKTTT width=8 seqs=95 chr12:93735366-93735446 ( 4) CCCATTTT 1 chr1:117044630-117044710 ( 14) CCCATTTT 1 chr14:24739835-24739915 ( 26) CCCATTTT 1 chr1:212462721-212462801 ( 23) CCCATTTT 1 chr19:19554816-19554896 ( 29) CCCATTTT 1 chr3:4261002-4261082 ( 1) CCCATTTT 1 chr15:67093726-67093806 ( 60) CCCATTTT 1 chr21:36396514-36396594 ( 43) CCCATTTT 1 chr6:106893529-106893609 ( 18) CCCATTTT 1 chr12:71002170-71002250 ( 8) CCCATTTT 1 chr1:201647527-201647607 ( 44) CCCATTTT 1 chr6:47208192-47208272 ( 8) CCCATTTT 1 chr3:184289913-184289993 ( 18) CCCATTTT 1 chr3:171096502-171096582 ( 37) CCCATTTT 1 chr11:18380314-18380394 ( 43) CCCATTTT 1 chr6:13633733-13633813 ( 11) CCCATTTT 1 chr2:220339222-220339302 ( 2) CCCATTTT 1 chr22:30724219-30724299 ( 16) CCCATTTT 1 chr17:35785528-35785608 ( 21) CCCATTTT 1 chr12:76497919-76497999 ( 17) CCCATTTT 1 chrX:129309053-129309133 ( 43) CCCATTTT 1 chr7:116281967-116282047 ( 7) CCCATTTT 1 chr8:86971020-86971100 ( 2) CCCATTTT 1 chr16:15576765-15576845 ( 7) CCCATTTT 1 chr6:136935630-136935710 ( 48) CCCATTTT 1 chr8:48175659-48175739 ( 10) CTCATTTT 1 chr11:88013973-88014053 ( 50) CTCAGTTT 1 chr1:39280974-39281054 ( 33) CTCAGTTT 1 chr12:111845998-11184607 ( 21) CTCAGTTT 1 chr6:17866743-17866823 ( 19) CTCAGTTT 1 chr5:54049709-54049789 ( 61) CTCAGTTT 1 chr12:102246945-10224702 ( 23) CTCAGTTT 1 chr8:94754475-94754555 ( 12) CTCAGTTT 1 chr4:81049328-81049408 ( 55) CTCAGTTT 1 chr16:23940707-23940787 ( 60) CTCAGTTT 1 chr6:130071781-130071861 ( 8) CTCAGTTT 1 chr12:53770690-53770770 ( 56) CTCAGTTT 1 chr3:171555607-171555687 ( 38) CTCAGTTT 1 chr5:145322468-145322548 ( 64) CTCAGTTT 1 chr11:32441865-32441945 ( 11) CTCAGTTT 1 chr4:75197821-75197901 ( 32) CTCAGTTT 1 chr5:125874421-125874501 ( 55) CTCAGTTT 1 chr12:114667098-11466717 ( 71) CTCAGTTT 1 chr20:17906716-17906796 ( 49) CTCAGTTT 1 chr12:11920113-11920193 ( 43) CTCAGTTT 1 chr1:158698464-158698544 ( 31) CTCAGTTT 1 chr3:49447698-49447778 ( 31) CTCAGTTT 1 chr9:123655236-123655316 ( 56) CTCAGTTT 1 chr18:32677934-32678014 ( 29) CTCAGTTT 1 chr12:113973052-11397313 ( 44) CCCATTTC 1 chr9:37301936-37302016 ( 31) CCCATTTC 1 chr1:59396847-59396927 ( 43) CCCATTTC 1 chr8:41653678-41653758 ( 39) CCCATTTC 1 chr1:15135381-15135461 ( 66) CCCATTTC 1 chr9:95821084-95821164 ( 69) CCCATTTC 1 chr21:35389757-35389837 ( 2) CCCATTTC 1 chr6:151768557-151768637 ( 6) CCCATTTC 1 chr12:132313326-13231340 ( 3) CCCATTTC 1 chr16:11254673-11254753 ( 56) TCCATTTT 1 chr11:45854766-45854846 ( 17) TCCATTTT 1 chr16:27562003-27562083 ( 55) TCCATTTT 1 chr7:86697260-86697340 ( 46) TCCATTTT 1 chr7:73632780-73632860 ( 5) TCCATTTT 1 chr1:61735944-61736024 ( 15) TCCATTTT 1 chr7:99224420-99224500 ( 12) TCCATTTT 1 chr6:16282719-16282799 ( 24) TCCATTTT 1 chr2:16921199-16921279 ( 6) TCCATTTT 1 chr1:18571412-18571492 ( 49) TCCAGTTT 1 chrX:106918529-106918609 ( 65) TCCAGTTT 1 chr12:112857736-11285781 ( 67) CCCATTGT 1 chr5:137443083-137443163 ( 47) CCCATTGT 1 chr6:164239904-164239984 ( 37) CTCATTTC 1 chr9:129699876-129699956 ( 34) CCCAGTGT 1 chr8:126555736-126555816 ( 25) CTCAGTTC 1 chr20:45827165-45827245 ( 3) CCCATTTA 1 chr9:123838083-123838163 ( 10) CCCATTTA 1 chr9:125024555-125024635 ( 33) CTCAGTTC 1 chr1:68234297-68234377 ( 50) CCCATTTA 1 chr15:29256460-29256540 ( 32) TTCAGTTT 1 chr19:3364633-3364713 ( 2) GCCATTTT 1 chr4:26596655-26596735 ( 5) GCCATTTT 1 chr22:36937905-36937985 ( 16) CCCATTCT 1 chr10:63556680-63556760 ( 43) CCCATTCT 1 chr5:173123354-173123434 ( 26) CCCATTAT 1 chr3:12784328-12784408 ( 47) CCCATTAT 1 chr10:63582003-63582083 ( 8) CTCAGTGT 1 chr6:35698691-35698771 ( 55) GCCAGTTT 1 chr8:68991649-68991729 ( 37) CCCACTTT 1 chr4:13528447-13528527 ( 17) CCCAATTT 1 chr16:81788599-81788679 ( 21) CCCATTGC 1 chr3:37802671-37802751 ( 41) TCCATTGT 1 chr16:27278683-27278763 ( 33) CCCATCTT 1 chr6:15899090-15899170 ( 50) CTCAGTTA 1 chr16:26727437-26727517 ( 7) CCTATTTT 1 chr9:129305932-129306012 ( 34) CCCAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAKTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.22236 E= 1.7e-062 -1321 180 -295 -90 -1321 152 -1321 31 -1321 205 -1321 -460 193 -1321 -1321 -1321 -464 -450 51 131 -1321 -450 -1321 195 -364 -350 -173 179 -264 -69 -1321 167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAKTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 1.7e-062 0.000000 0.831579 0.031579 0.136842 0.000000 0.684211 0.000000 0.315789 0.000000 0.989474 0.000000 0.010526 1.000000 0.000000 0.000000 0.000000 0.010526 0.010526 0.347368 0.631579 0.000000 0.010526 0.000000 0.989474 0.021053 0.021053 0.073684 0.884211 0.042105 0.147368 0.000000 0.810526 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAKTTT MEME-1 regular expression -------------------------------------------------------------------------------- C[CT]CA[TG]TTT -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMTGRG MEME-2 width = 8 sites = 85 llr = 698 E-value = 1.6e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8994::61 pos.-specific C :::6:::: probability G 111::a49 matrix T ::::a::: bits 2.1 ** 1.9 ** 1.7 * ** * 1.4 ** ** * Relative 1.2 *** ** * Entropy 1.0 ******** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACTGAG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:93735366-93735446 22 1.71e-05 atagatgagg aaactgag ctccagggag chr1:117044630-117044710 32 1.71e-05 acagatgatg aaactgag gtctggagac chr12:113973052-11397313 62 1.71e-05 acagattggc aaactgag gctcagaata chr14:24739835-24739915 44 1.71e-05 acagatgagc aaactgag gcccaaagag chr16:27278683-27278763 51 1.71e-05 acagatgagg aaactgag actaagaggg chr6:71553177-71553257 7 1.71e-05 aagaga aaactgag gcacagagag chr20:45827165-45827245 21 1.71e-05 acagagggtg aaactgag actcaggagg chr6:106893529-106893609 36 1.71e-05 gcagatgaag aaactgag gcttaaagaa chr4:13528447-13528527 35 1.71e-05 acagatgagc aaactgag gcccaatatc chr12:71002170-71002250 26 1.71e-05 acagataaga aaactgag gcaagaaagg chr9:37301936-37302016 49 1.71e-05 acaggtcaga aaactgag actcagagag chr6:47208192-47208272 26 1.71e-05 acagatgagg aaactgag gctctaagag chr3:184289913-184289993 36 1.71e-05 acagatgaca aaactgag gtataaagat chr1:59396847-59396927 61 1.71e-05 tctgatgggt aaactgag gctcaacaag chr11:18380314-18380394 61 1.71e-05 atagatttgg aaactgag atccagacga chr8:41653678-41653758 57 1.71e-05 ccagacaaga aaactgag acacagagaa chr8:48175659-48175739 28 1.71e-05 atggatgagg aaactgag gctcagcaga chr5:173123354-173123434 45 1.71e-05 ctgatgagga aaactgag gcccgcaact chr5:137443083-137443163 15 1.71e-05 atagatgaag aaactgag actcagcaag chr6:13633733-13633813 29 1.71e-05 acagatgaag aaactgag acacagagca chr3:24406018-24406098 4 1.71e-05 aga aaactgag atctgaaaag chr16:27562003-27562083 73 1.71e-05 acagatgatg aaactgag chr10:63556680-63556760 61 1.71e-05 acagactaac aaactgag gtctagcaat chr12:114042649-11404272 11 1.71e-05 acagataagg aaactgag gctcagagag chr1:61735944-61736024 33 1.71e-05 acagatgaag aaactgag atccagcaca chr16:55086409-55086489 6 1.71e-05 ttgga aaactgag gcacagagag chr8:86971020-86971100 20 1.71e-05 acagataagg aaactgag ataaacaaaa chr1:68234297-68234377 68 1.71e-05 acagatgagg aaactgag actca chr16:15576765-15576845 25 1.71e-05 acagatatgg aaactgag tctATACACA chr17:31440787-31440867 66 1.71e-05 agtagcagaa aaactgag attcaaa chr6:151768557-151768637 24 1.71e-05 actgattagg aaactgag gtttaaagag chr20:22387974-22388054 16 6.93e-05 cttcatctgt aaaatggg agtgacatgg chr2:172737424-172737504 66 6.93e-05 cctcatctgt aaaatggg aatacta chr11:88013973-88014053 68 6.93e-05 tcctatctgt aaaatggg ctttt chr1:39280974-39281054 51 6.93e-05 cttccactgt aaaatggg aataacagta chr11:36214684-36214764 17 6.93e-05 cctcatctgt aaaatggg ggtaatgctg chr10:63582003-63582083 26 6.93e-05 cctcatctga aaaatggg gacaatgata chr5:180248708-180248788 46 6.93e-05 gcttagctgt aaaatggg aacaatcaga chr6:17866743-17866823 37 6.93e-05 tcttatctgt aaaatggg ggcagtaata chr1:149855599-149855679 17 6.93e-05 ccttatctgt aaaatggg tgataataac chr1:201558436-201558516 69 6.93e-05 cctcatccat aaaatggg gata chr1:183958887-183958967 63 6.93e-05 ttccatctgt aaaatggg acaataacat chr12:102246945-10224702 41 6.93e-05 cctcatgtgt aaaatggg tataataata chr17:27569246-27569326 59 6.93e-05 gctcatctgt aaaatggg tattattatc chr17:62380069-62380149 33 6.93e-05 tccctgctct aaaatggg atcatacctt chr8:94754475-94754555 30 6.93e-05 cttcatctgt aaaatggg gatactccta chr4:81049328-81049408 73 6.93e-05 tcctatcttt aaaatggg chr11:20048345-20048425 40 6.93e-05 cctcatctgt aaaatggg tatagtgtta chr4:75197821-75197901 50 6.93e-05 cttcattcat aaaatggg gataatagta chr9:125024555-125024635 51 6.93e-05 cctcatctgt aaaatggg gataatgcct chr20:17906716-17906796 67 6.93e-05 attcatctgt aaaatggg CTCTGC chr12:11920113-11920193 61 6.93e-05 ccttatctct aaaatggg tacagtcata chr2:65249497-65249577 60 6.93e-05 ccccatttgt aaaatggg gctaatgtca chr11:45843905-45843985 8 8.53e-05 cagataa gaactgag gcacagagag chr7:151327585-151327665 27 1.18e-04 ctctatttta gaaatgag aaaaccaagg chr4:26596655-26596735 29 1.18e-04 ccaccagcaa gaaatgag agtgctggtt chr3:37802671-37802751 64 1.18e-04 aagatgaaga gaaatgag cactttcaa chr12:121379388-12137946 68 1.34e-04 cccgttctgt gaaatggg TCTAT chr12:111845998-11184607 39 1.34e-04 cctcatctgt gaaatggg tgtgctaata chr2:20707627-20707707 5 1.34e-04 tgga gaaatggg ttcagagagg chr6:15899090-15899170 68 1.34e-04 cttaacctgt gaaatggg gataa chr21:31121733-31121813 24 1.34e-04 ctccatctgt gaaatggg ctgaagggct chr22:36937905-36937985 35 1.50e-04 cagatgagga agactgag gGCAAGGAAC chr2:220339222-220339302 20 1.50e-04 acagatgagg agactgag gccgaggcta chr22:30724219-30724299 34 1.50e-04 acagttaagg agactgag gtaaagtcag chrX:129309053-129309133 61 1.50e-04 atagataagg agactgag gctaagagag chr12:132313326-13231340 21 1.50e-04 CTGGGTGGGG AGACTGAG GCAGGGACGC chr19:19554816-19554896 47 1.98e-04 acaggtgagg aagctgag gcccttgtgg chr3:4261002-4261082 20 1.98e-04 cagatgagga aagctgag gctcagggaa chr12:76497919-76497999 35 1.98e-04 agagatgagg aagctgag gttaaattgc chr3:170868880-170868960 43 1.98e-04 gcatgtaagg aagctgag gttcagagag chr9:108457696-108457776 49 2.48e-04 CACTATCTGC AGAATGGG GATATAGTCT chr8:68991649-68991729 55 2.48e-04 acagatgagg aaactgaa actcagaggg chr17:17595748-17595828 34 2.48e-04 attatcaagg aaactgaa gcacagagag chr2:16921199-16921279 24 2.48e-04 atgcaggaag aaactgaa gcccagagag chr17:77927300-77927380 5 3.50e-04 gagg caactggg gcccagagag chr3:12784328-12784408 65 3.81e-04 acagataagg acactgag gctcaaat chr20:44614827-44614907 44 4.16e-04 ccctacctag caaatggg cacagctcct chr16:81788599-81788679 38 4.16e-04 cctgatctgt caaatggg tctggaaatc chr11:73492526-73492606 3 4.16e-04 gt aaaatgga aataaCCATG chr1:158698464-158698544 49 4.16e-04 cctcatctgt aaaatgga gacaataaaa chr3:49447698-49447778 48 4.16e-04 tgctcatctg caaatggg gttggacaac chr3:171555607-171555687 56 4.64e-04 caccatctgt acaatggg actaataata chr18:32677934-32678014 47 4.64e-04 acccatctgt acaatggg actaaaaacc chr1:11125204-11125284 59 5.23e-04 ccttgtgttt gagctgag gatggtaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:93735366-93735446 1.7e-05 21_[+2]_51 chr1:117044630-117044710 1.7e-05 31_[+2]_41 chr12:113973052-11397313 1.7e-05 61_[+2]_11 chr14:24739835-24739915 1.7e-05 43_[+2]_29 chr16:27278683-27278763 1.7e-05 50_[+2]_22 chr6:71553177-71553257 1.7e-05 6_[+2]_66 chr20:45827165-45827245 1.7e-05 20_[+2]_52 chr6:106893529-106893609 1.7e-05 35_[+2]_37 chr4:13528447-13528527 1.7e-05 34_[+2]_38 chr12:71002170-71002250 1.7e-05 25_[+2]_47 chr9:37301936-37302016 1.7e-05 48_[+2]_24 chr6:47208192-47208272 1.7e-05 25_[+2]_47 chr3:184289913-184289993 1.7e-05 35_[+2]_37 chr1:59396847-59396927 1.7e-05 60_[+2]_12 chr11:18380314-18380394 1.7e-05 60_[+2]_12 chr8:41653678-41653758 1.7e-05 56_[+2]_16 chr8:48175659-48175739 1.7e-05 27_[+2]_45 chr5:173123354-173123434 1.7e-05 44_[+2]_28 chr5:137443083-137443163 1.7e-05 14_[+2]_58 chr6:13633733-13633813 1.7e-05 28_[+2]_44 chr3:24406018-24406098 1.7e-05 3_[+2]_69 chr16:27562003-27562083 1.7e-05 72_[+2] chr10:63556680-63556760 1.7e-05 60_[+2]_12 chr12:114042649-11404272 1.7e-05 10_[+2]_62 chr1:61735944-61736024 1.7e-05 32_[+2]_40 chr16:55086409-55086489 1.7e-05 5_[+2]_67 chr8:86971020-86971100 1.7e-05 19_[+2]_53 chr1:68234297-68234377 1.7e-05 67_[+2]_5 chr16:15576765-15576845 1.7e-05 24_[+2]_48 chr17:31440787-31440867 1.7e-05 65_[+2]_7 chr6:151768557-151768637 1.7e-05 23_[+2]_49 chr20:22387974-22388054 6.9e-05 15_[+2]_57 chr2:172737424-172737504 6.9e-05 65_[+2]_7 chr11:88013973-88014053 6.9e-05 67_[+2]_5 chr1:39280974-39281054 6.9e-05 50_[+2]_22 chr11:36214684-36214764 6.9e-05 16_[+2]_56 chr10:63582003-63582083 6.9e-05 25_[+2]_47 chr5:180248708-180248788 6.9e-05 45_[+2]_27 chr6:17866743-17866823 6.9e-05 36_[+2]_36 chr1:149855599-149855679 6.9e-05 16_[+2]_56 chr1:201558436-201558516 6.9e-05 68_[+2]_4 chr1:183958887-183958967 6.9e-05 62_[+2]_10 chr12:102246945-10224702 6.9e-05 40_[+2]_32 chr17:27569246-27569326 6.9e-05 58_[+2]_14 chr17:62380069-62380149 6.9e-05 32_[+2]_40 chr8:94754475-94754555 6.9e-05 29_[+2]_43 chr4:81049328-81049408 6.9e-05 72_[+2] chr11:20048345-20048425 6.9e-05 39_[+2]_33 chr4:75197821-75197901 6.9e-05 49_[+2]_23 chr9:125024555-125024635 6.9e-05 50_[+2]_22 chr20:17906716-17906796 6.9e-05 66_[+2]_6 chr12:11920113-11920193 6.9e-05 60_[+2]_12 chr2:65249497-65249577 6.9e-05 59_[+2]_13 chr11:45843905-45843985 8.5e-05 7_[+2]_65 chr7:151327585-151327665 0.00012 26_[+2]_46 chr4:26596655-26596735 0.00012 28_[+2]_44 chr3:37802671-37802751 0.00012 63_[+2]_9 chr12:121379388-12137946 0.00013 67_[+2]_5 chr12:111845998-11184607 0.00013 38_[+2]_34 chr2:20707627-20707707 0.00013 4_[+2]_68 chr6:15899090-15899170 0.00013 67_[+2]_5 chr21:31121733-31121813 0.00013 23_[+2]_49 chr22:36937905-36937985 0.00015 34_[+2]_38 chr2:220339222-220339302 0.00015 19_[+2]_53 chr22:30724219-30724299 0.00015 33_[+2]_39 chrX:129309053-129309133 0.00015 60_[+2]_12 chr12:132313326-13231340 0.00015 20_[+2]_52 chr19:19554816-19554896 0.0002 46_[+2]_26 chr3:4261002-4261082 0.0002 19_[+2]_53 chr12:76497919-76497999 0.0002 34_[+2]_38 chr3:170868880-170868960 0.0002 42_[+2]_30 chr9:108457696-108457776 0.00025 48_[+2]_24 chr8:68991649-68991729 0.00025 54_[+2]_18 chr17:17595748-17595828 0.00025 33_[+2]_39 chr2:16921199-16921279 0.00025 23_[+2]_49 chr17:77927300-77927380 0.00035 4_[+2]_68 chr3:12784328-12784408 0.00038 64_[+2]_8 chr20:44614827-44614907 0.00042 43_[+2]_29 chr16:81788599-81788679 0.00042 37_[+2]_35 chr11:73492526-73492606 0.00042 2_[+2]_70 chr1:158698464-158698544 0.00042 48_[+2]_24 chr3:49447698-49447778 0.00042 47_[+2]_25 chr3:171555607-171555687 0.00046 55_[+2]_17 chr18:32677934-32678014 0.00046 46_[+2]_26 chr1:11125204-11125284 0.00052 58_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMTGRG width=8 seqs=85 chr12:93735366-93735446 ( 22) AAACTGAG 1 chr1:117044630-117044710 ( 32) AAACTGAG 1 chr12:113973052-11397313 ( 62) AAACTGAG 1 chr14:24739835-24739915 ( 44) AAACTGAG 1 chr16:27278683-27278763 ( 51) AAACTGAG 1 chr6:71553177-71553257 ( 7) AAACTGAG 1 chr20:45827165-45827245 ( 21) AAACTGAG 1 chr6:106893529-106893609 ( 36) AAACTGAG 1 chr4:13528447-13528527 ( 35) AAACTGAG 1 chr12:71002170-71002250 ( 26) AAACTGAG 1 chr9:37301936-37302016 ( 49) AAACTGAG 1 chr6:47208192-47208272 ( 26) AAACTGAG 1 chr3:184289913-184289993 ( 36) AAACTGAG 1 chr1:59396847-59396927 ( 61) AAACTGAG 1 chr11:18380314-18380394 ( 61) AAACTGAG 1 chr8:41653678-41653758 ( 57) AAACTGAG 1 chr8:48175659-48175739 ( 28) AAACTGAG 1 chr5:173123354-173123434 ( 45) AAACTGAG 1 chr5:137443083-137443163 ( 15) AAACTGAG 1 chr6:13633733-13633813 ( 29) AAACTGAG 1 chr3:24406018-24406098 ( 4) AAACTGAG 1 chr16:27562003-27562083 ( 73) AAACTGAG 1 chr10:63556680-63556760 ( 61) AAACTGAG 1 chr12:114042649-11404272 ( 11) AAACTGAG 1 chr1:61735944-61736024 ( 33) AAACTGAG 1 chr16:55086409-55086489 ( 6) AAACTGAG 1 chr8:86971020-86971100 ( 20) AAACTGAG 1 chr1:68234297-68234377 ( 68) AAACTGAG 1 chr16:15576765-15576845 ( 25) AAACTGAG 1 chr17:31440787-31440867 ( 66) AAACTGAG 1 chr6:151768557-151768637 ( 24) AAACTGAG 1 chr20:22387974-22388054 ( 16) AAAATGGG 1 chr2:172737424-172737504 ( 66) AAAATGGG 1 chr11:88013973-88014053 ( 68) AAAATGGG 1 chr1:39280974-39281054 ( 51) AAAATGGG 1 chr11:36214684-36214764 ( 17) AAAATGGG 1 chr10:63582003-63582083 ( 26) AAAATGGG 1 chr5:180248708-180248788 ( 46) AAAATGGG 1 chr6:17866743-17866823 ( 37) AAAATGGG 1 chr1:149855599-149855679 ( 17) AAAATGGG 1 chr1:201558436-201558516 ( 69) AAAATGGG 1 chr1:183958887-183958967 ( 63) AAAATGGG 1 chr12:102246945-10224702 ( 41) AAAATGGG 1 chr17:27569246-27569326 ( 59) AAAATGGG 1 chr17:62380069-62380149 ( 33) AAAATGGG 1 chr8:94754475-94754555 ( 30) AAAATGGG 1 chr4:81049328-81049408 ( 73) AAAATGGG 1 chr11:20048345-20048425 ( 40) AAAATGGG 1 chr4:75197821-75197901 ( 50) AAAATGGG 1 chr9:125024555-125024635 ( 51) AAAATGGG 1 chr20:17906716-17906796 ( 67) AAAATGGG 1 chr12:11920113-11920193 ( 61) AAAATGGG 1 chr2:65249497-65249577 ( 60) AAAATGGG 1 chr11:45843905-45843985 ( 8) GAACTGAG 1 chr7:151327585-151327665 ( 27) GAAATGAG 1 chr4:26596655-26596735 ( 29) GAAATGAG 1 chr3:37802671-37802751 ( 64) GAAATGAG 1 chr12:121379388-12137946 ( 68) GAAATGGG 1 chr12:111845998-11184607 ( 39) GAAATGGG 1 chr2:20707627-20707707 ( 5) GAAATGGG 1 chr6:15899090-15899170 ( 68) GAAATGGG 1 chr21:31121733-31121813 ( 24) GAAATGGG 1 chr22:36937905-36937985 ( 35) AGACTGAG 1 chr2:220339222-220339302 ( 20) AGACTGAG 1 chr22:30724219-30724299 ( 34) AGACTGAG 1 chrX:129309053-129309133 ( 61) AGACTGAG 1 chr12:132313326-13231340 ( 21) AGACTGAG 1 chr19:19554816-19554896 ( 47) AAGCTGAG 1 chr3:4261002-4261082 ( 20) AAGCTGAG 1 chr12:76497919-76497999 ( 35) AAGCTGAG 1 chr3:170868880-170868960 ( 43) AAGCTGAG 1 chr9:108457696-108457776 ( 49) AGAATGGG 1 chr8:68991649-68991729 ( 55) AAACTGAA 1 chr17:17595748-17595828 ( 34) AAACTGAA 1 chr2:16921199-16921279 ( 24) AAACTGAA 1 chr17:77927300-77927380 ( 5) CAACTGGG 1 chr3:12784328-12784408 ( 65) ACACTGAG 1 chr20:44614827-44614907 ( 44) CAAATGGG 1 chr16:81788599-81788679 ( 38) CAAATGGG 1 chr11:73492526-73492606 ( 3) AAAATGGA 1 chr1:158698464-158698544 ( 49) AAAATGGA 1 chr3:49447698-49447778 ( 48) CAAATGGG 1 chr3:171555607-171555687 ( 56) ACAATGGG 1 chr18:32677934-32678014 ( 47) ACAATGGG 1 chr1:11125204-11125284 ( 59) GAGCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.05851 E= 1.6e-056 167 -234 -105 -1305 177 -275 -179 -1305 184 -1305 -205 -1305 77 121 -1305 -1305 -1305 -1305 -1305 197 -1305 -1305 204 -1305 114 -1305 80 -1305 -216 -1305 195 -1305 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 1.6e-056 0.835294 0.047059 0.117647 0.000000 0.894118 0.035294 0.070588 0.000000 0.941176 0.000000 0.058824 0.000000 0.447059 0.552941 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.576471 0.000000 0.423529 0.000000 0.058824 0.000000 0.941176 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 regular expression -------------------------------------------------------------------------------- AAA[CA]TG[AG]G -------------------------------------------------------------------------------- Time 8.74 secs. ******************************************************************************** ******************************************************************************** MOTIF YCWCWCWG MEME-3 width = 8 sites = 70 llr = 589 E-value = 5.4e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCWCWCWG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5:5:5: pos.-specific C 6a:a:a:: probability G :::::::a matrix T 4:5:5:5: bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.4 * * * * Relative 1.2 * * * * Entropy 1.0 ******** (12.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCACAG consensus T A T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWCWCWG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:27569246-27569326 30 1.34e-05 acttccctgg cctctcag aacctcagtt chr17:39679311-39679391 47 5.41e-05 agttactgaa cctctctg agcctatttc chr7:75361424-75361504 62 5.41e-05 agtcacttag cctctctg agcctgagct chr11:60493238-60493318 25 5.41e-05 aggcacttaa cctctctg agcctcagag chr9:135141557-135141637 57 5.41e-05 agtcacttga cctctctg agcctgtttc chr5:76019218-76019298 51 5.41e-05 agttacttag cctctctg tgcctccatg chr3:4697120-4697200 37 5.41e-05 agttacttgc cctctctg agcctcaatt chr1:18571412-18571492 38 5.41e-05 agttacttaa cctctctg tgctccagtt chr16:25783718-25783798 44 5.41e-05 agttacagag cctctctg atcctctctt chr6:35698691-35698771 46 5.41e-05 agtctcttaa cctctctg agccagtttc chr11:45848821-45848901 12 5.41e-05 aggaatgttc cctctctg gtctcttgag chrX:106918529-106918609 54 5.41e-05 agttacttaa cctctctg agctccagtt chr1:204674070-204674150 4 5.41e-05 taa cctctctg agttcagaac chr17:62380069-62380149 5 5.41e-05 ttga cctctctg aactttattt chr6:148065304-148065384 53 5.41e-05 agttacttaa cctctctg agtcttagac chr11:18380314-18380394 10 5.41e-05 tcatgtaaa cctcacag catctttatg chr16:81788599-81788679 9 5.41e-05 ttgcttac cctctctg agcccccatt chr8:41653678-41653758 27 5.41e-05 CTCACTTCAG CCTCACAG CAGAcccatt chr16:23940707-23940787 49 5.41e-05 agattattaa cctctctg agcctcagtt chr5:145087900-145087980 31 5.41e-05 agttgcttaa cctctctg ggaaccagtt chr4:6271455-6271535 33 5.41e-05 GCTACACCGG CCACTCAG CAGGCCGAGC chr5:145322468-145322548 53 5.41e-05 agtcacttaa cctctctg atcctcagtt chr5:5703197-5703277 57 5.41e-05 ggtttcttaa cctctctg gtctcaggta chr17:40834186-40834266 28 5.41e-05 agtttcttga cctctctg agcctgaggt chr3:71302474-71302554 30 5.41e-05 attagcttaa cctctctg aacctcaggt chrX:30281039-30281119 46 5.41e-05 agttacttaa cctctctg tgcctctttt chr7:2443452-2443532 60 5.41e-05 CTGCGCGCGC CCTCTCTG AGCCCCGCTC chr12:127674696-12767477 28 5.41e-05 atgctcaatg cctcacag tcccaaaggg chr5:90608668-90608748 64 5.41e-05 agtctcttaa cctctctg agccataat chr5:125874421-125874501 44 5.41e-05 agttactcaa cctctctg tgcctcagtt chr12:114667098-11466717 60 5.41e-05 ggttacttaa cctctctg tgcctcagtt chr22:29703248-29703328 20 5.41e-05 GGCCCCGCAC CCTCTCTG GGCCCAGAGC chrX:129309053-129309133 2 5.41e-05 t cctcacag cagctttatg chr2:208293443-208293523 72 5.41e-05 agttacttac cctctctg a chr13:52531012-52531092 56 5.41e-05 agttgcttag cctctctg aacctcagct chr20:17662967-17663047 28 9.51e-05 CCGCACCCCG CCACTCTG CCGGTCGCTG chr6:12014364-12014444 47 9.51e-05 ctgaacaagg ccacacag taaggggtaa chr11:45854766-45854846 73 9.51e-05 ttgtccaagg ccacacag chrX:117897614-117897694 41 9.51e-05 ttgctacaag ccacacag ctaataagtC chr5:134493538-134493618 1 1.23e-04 . TCTCTCAG GGTCTCAGTG chr1:39280974-39281054 22 1.67e-04 agttaattaa tctctctg accctcagtt chr1:41159314-41159394 29 1.67e-04 ttgtctggtg tcactcag taagtggttg chr20:22387974-22388054 40 2.11e-04 atggaatcca tctcactg gattgccatg chr16:10980605-10980685 69 2.11e-04 atttgcaaag tcacacag caag chr12:117536917-11753699 23 2.11e-04 tggcccaagg tcacacag cgcggcggcg chr6:71553177-71553257 45 2.11e-04 ttgcacaagg tcacacag ctggtagatt chr3:12737596-12737676 36 2.11e-04 tcgtccaagg tcacacag catagtgact chr9:123838083-123838163 66 2.11e-04 ttgcctaaga tcacacag taagtgg chr2:20707627-20707707 42 2.11e-04 ttgcctgagg tcacacag ctagtaagtt chr11:36149284-36149364 54 2.11e-04 ctgcccaaga tcacacag cttgtaagAA chr11:45843905-45843985 46 2.11e-04 ttgtctgagg tcacacag ctaataagta chr17:17595748-17595828 72 2.11e-04 ctgcctgagg tcacacag c chr16:26727437-26727517 63 2.11e-04 tttcctaagg tcacacag ctagtaagtg chr8:48175659-48175739 69 2.11e-04 ttgcctaagg tcacacag cagt chr16:84293451-84293531 57 2.11e-04 ttgtccaagg tcacacag cagtgaggag chr7:139683231-139683311 34 2.11e-04 tttctcaggg tcacacag caaataCAGA chr6:13633733-13633813 67 2.11e-04 ttttccaagg tcacacag ctagta chr1:14975875-14975955 3 2.11e-04 cg tcacacag caggtaacca chr12:114042649-11404272 49 2.11e-04 ttgtgcaagc tcacacag ctggtaagtg chr16:55086409-55086489 44 2.11e-04 ttgtcaaagg tcacacag catgtcaata chr20:51808673-51808753 29 2.11e-04 ttgcagaaag tcacacag ctaataagCA chr17:77927300-77927380 43 2.11e-04 ttgcccaagg tcacacag ctggcaagtg chr2:20811908-20811988 49 2.11e-04 tggcccaggg tcacacag ccaggaagcc chr16:20122633-20122713 45 2.11e-04 ttgcctgagg tcacacag cgagATATAC chr7:99224420-99224500 68 2.11e-04 tttcccatga tcacacag caatt chr7:116281967-116282047 62 2.11e-04 ctgatcaatg tcacacag atagaaaata chr6:83451211-83451291 31 2.11e-04 ttgcccaaga tcacacag ctagcaggtg chr2:16921199-16921279 62 2.11e-04 ttgctcaagg tcacacag cagtttagta chr17:31440787-31440867 46 2.11e-04 ttgcctaagg tcacacag ctagtagcag chr2:178568061-178568141 36 2.11e-04 ttttccaagg tcacacag ctagcttgta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWCWCWG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:27569246-27569326 1.3e-05 29_[+3]_43 chr17:39679311-39679391 5.4e-05 46_[+3]_26 chr7:75361424-75361504 5.4e-05 61_[+3]_11 chr11:60493238-60493318 5.4e-05 24_[+3]_48 chr9:135141557-135141637 5.4e-05 56_[+3]_16 chr5:76019218-76019298 5.4e-05 50_[+3]_22 chr3:4697120-4697200 5.4e-05 36_[+3]_36 chr1:18571412-18571492 5.4e-05 37_[+3]_35 chr16:25783718-25783798 5.4e-05 43_[+3]_29 chr6:35698691-35698771 5.4e-05 45_[+3]_27 chr11:45848821-45848901 5.4e-05 11_[+3]_61 chrX:106918529-106918609 5.4e-05 53_[+3]_19 chr1:204674070-204674150 5.4e-05 3_[+3]_69 chr17:62380069-62380149 5.4e-05 4_[+3]_68 chr6:148065304-148065384 5.4e-05 52_[+3]_20 chr11:18380314-18380394 5.4e-05 9_[+3]_63 chr16:81788599-81788679 5.4e-05 8_[+3]_64 chr8:41653678-41653758 5.4e-05 26_[+3]_46 chr16:23940707-23940787 5.4e-05 48_[+3]_24 chr5:145087900-145087980 5.4e-05 30_[+3]_42 chr4:6271455-6271535 5.4e-05 32_[+3]_40 chr5:145322468-145322548 5.4e-05 52_[+3]_20 chr5:5703197-5703277 5.4e-05 56_[+3]_16 chr17:40834186-40834266 5.4e-05 27_[+3]_45 chr3:71302474-71302554 5.4e-05 29_[+3]_43 chrX:30281039-30281119 5.4e-05 45_[+3]_27 chr7:2443452-2443532 5.4e-05 59_[+3]_13 chr12:127674696-12767477 5.4e-05 27_[+3]_45 chr5:90608668-90608748 5.4e-05 63_[+3]_9 chr5:125874421-125874501 5.4e-05 43_[+3]_29 chr12:114667098-11466717 5.4e-05 59_[+3]_13 chr22:29703248-29703328 5.4e-05 19_[+3]_53 chrX:129309053-129309133 5.4e-05 1_[+3]_71 chr2:208293443-208293523 5.4e-05 71_[+3]_1 chr13:52531012-52531092 5.4e-05 55_[+3]_17 chr20:17662967-17663047 9.5e-05 27_[+3]_45 chr6:12014364-12014444 9.5e-05 46_[+3]_26 chr11:45854766-45854846 9.5e-05 72_[+3] chrX:117897614-117897694 9.5e-05 40_[+3]_32 chr5:134493538-134493618 0.00012 [+3]_72 chr1:39280974-39281054 0.00017 21_[+3]_51 chr1:41159314-41159394 0.00017 28_[+3]_44 chr20:22387974-22388054 0.00021 39_[+3]_33 chr16:10980605-10980685 0.00021 68_[+3]_4 chr12:117536917-11753699 0.00021 22_[+3]_50 chr6:71553177-71553257 0.00021 44_[+3]_28 chr3:12737596-12737676 0.00021 35_[+3]_37 chr9:123838083-123838163 0.00021 65_[+3]_7 chr2:20707627-20707707 0.00021 41_[+3]_31 chr11:36149284-36149364 0.00021 53_[+3]_19 chr11:45843905-45843985 0.00021 45_[+3]_27 chr17:17595748-17595828 0.00021 71_[+3]_1 chr16:26727437-26727517 0.00021 62_[+3]_10 chr8:48175659-48175739 0.00021 68_[+3]_4 chr16:84293451-84293531 0.00021 56_[+3]_16 chr7:139683231-139683311 0.00021 33_[+3]_39 chr6:13633733-13633813 0.00021 66_[+3]_6 chr1:14975875-14975955 0.00021 2_[+3]_70 chr12:114042649-11404272 0.00021 48_[+3]_24 chr16:55086409-55086489 0.00021 43_[+3]_29 chr20:51808673-51808753 0.00021 28_[+3]_44 chr17:77927300-77927380 0.00021 42_[+3]_30 chr2:20811908-20811988 0.00021 48_[+3]_24 chr16:20122633-20122713 0.00021 44_[+3]_28 chr7:99224420-99224500 0.00021 67_[+3]_5 chr7:116281967-116282047 0.00021 61_[+3]_11 chr6:83451211-83451291 0.00021 30_[+3]_42 chr2:16921199-16921279 0.00021 61_[+3]_11 chr17:31440787-31440867 0.00021 45_[+3]_27 chr2:178568061-178568141 0.00021 35_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWCWCWG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCWCWCWG width=8 seqs=70 chr17:27569246-27569326 ( 30) CCTCTCAG 1 chr17:39679311-39679391 ( 47) CCTCTCTG 1 chr7:75361424-75361504 ( 62) CCTCTCTG 1 chr11:60493238-60493318 ( 25) CCTCTCTG 1 chr9:135141557-135141637 ( 57) CCTCTCTG 1 chr5:76019218-76019298 ( 51) CCTCTCTG 1 chr3:4697120-4697200 ( 37) CCTCTCTG 1 chr1:18571412-18571492 ( 38) CCTCTCTG 1 chr16:25783718-25783798 ( 44) CCTCTCTG 1 chr6:35698691-35698771 ( 46) CCTCTCTG 1 chr11:45848821-45848901 ( 12) CCTCTCTG 1 chrX:106918529-106918609 ( 54) CCTCTCTG 1 chr1:204674070-204674150 ( 4) CCTCTCTG 1 chr17:62380069-62380149 ( 5) CCTCTCTG 1 chr6:148065304-148065384 ( 53) CCTCTCTG 1 chr11:18380314-18380394 ( 10) CCTCACAG 1 chr16:81788599-81788679 ( 9) CCTCTCTG 1 chr8:41653678-41653758 ( 27) CCTCACAG 1 chr16:23940707-23940787 ( 49) CCTCTCTG 1 chr5:145087900-145087980 ( 31) CCTCTCTG 1 chr4:6271455-6271535 ( 33) CCACTCAG 1 chr5:145322468-145322548 ( 53) CCTCTCTG 1 chr5:5703197-5703277 ( 57) CCTCTCTG 1 chr17:40834186-40834266 ( 28) CCTCTCTG 1 chr3:71302474-71302554 ( 30) CCTCTCTG 1 chrX:30281039-30281119 ( 46) CCTCTCTG 1 chr7:2443452-2443532 ( 60) CCTCTCTG 1 chr12:127674696-12767477 ( 28) CCTCACAG 1 chr5:90608668-90608748 ( 64) CCTCTCTG 1 chr5:125874421-125874501 ( 44) CCTCTCTG 1 chr12:114667098-11466717 ( 60) CCTCTCTG 1 chr22:29703248-29703328 ( 20) CCTCTCTG 1 chrX:129309053-129309133 ( 2) CCTCACAG 1 chr2:208293443-208293523 ( 72) CCTCTCTG 1 chr13:52531012-52531092 ( 56) CCTCTCTG 1 chr20:17662967-17663047 ( 28) CCACTCTG 1 chr6:12014364-12014444 ( 47) CCACACAG 1 chr11:45854766-45854846 ( 73) CCACACAG 1 chrX:117897614-117897694 ( 41) CCACACAG 1 chr5:134493538-134493618 ( 1) TCTCTCAG 1 chr1:39280974-39281054 ( 22) TCTCTCTG 1 chr1:41159314-41159394 ( 29) TCACTCAG 1 chr20:22387974-22388054 ( 40) TCTCACTG 1 chr16:10980605-10980685 ( 69) TCACACAG 1 chr12:117536917-11753699 ( 23) TCACACAG 1 chr6:71553177-71553257 ( 45) TCACACAG 1 chr3:12737596-12737676 ( 36) TCACACAG 1 chr9:123838083-123838163 ( 66) TCACACAG 1 chr2:20707627-20707707 ( 42) TCACACAG 1 chr11:36149284-36149364 ( 54) TCACACAG 1 chr11:45843905-45843985 ( 46) TCACACAG 1 chr17:17595748-17595828 ( 72) TCACACAG 1 chr16:26727437-26727517 ( 63) TCACACAG 1 chr8:48175659-48175739 ( 69) TCACACAG 1 chr16:84293451-84293531 ( 57) TCACACAG 1 chr7:139683231-139683311 ( 34) TCACACAG 1 chr6:13633733-13633813 ( 67) TCACACAG 1 chr1:14975875-14975955 ( 3) TCACACAG 1 chr12:114042649-11404272 ( 49) TCACACAG 1 chr16:55086409-55086489 ( 44) TCACACAG 1 chr20:51808673-51808753 ( 29) TCACACAG 1 chr17:77927300-77927380 ( 43) TCACACAG 1 chr2:20811908-20811988 ( 49) TCACACAG 1 chr16:20122633-20122713 ( 45) TCACACAG 1 chr7:99224420-99224500 ( 68) TCACACAG 1 chr7:116281967-116282047 ( 62) TCACACAG 1 chr6:83451211-83451291 ( 31) TCACACAG 1 chr2:16921199-16921279 ( 62) TCACACAG 1 chr17:31440787-31440867 ( 46) TCACACAG 1 chr2:178568061-178568141 ( 36) TCACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWCWCWG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.12365 E= 5.4e-043 -1277 123 -1277 79 -1277 207 -1277 -1277 84 -1277 -1277 105 -1277 207 -1277 -1277 93 -1277 -1277 97 -1277 207 -1277 -1277 105 -1277 -1277 84 -1277 -1277 204 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWCWCWG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 5.4e-043 0.000000 0.557143 0.000000 0.442857 0.000000 1.000000 0.000000 0.000000 0.471429 0.000000 0.000000 0.528571 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.542857 0.000000 0.000000 0.457143 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWCWCWG MEME-3 regular expression -------------------------------------------------------------------------------- [CT]C[TA]C[AT]C[AT]G -------------------------------------------------------------------------------- Time 12.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGAGAGG MEME-4 width = 8 sites = 41 llr = 408 E-value = 4.0e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:a:a1: pos.-specific C a::::::: probability G ::a:a:99 matrix T :::::::1 bits 2.1 * * 1.9 *** * 1.7 ******* 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:93735366-93735446 68 1.52e-05 caggcagtac cagagAGG TGGCA chr16:10980605-10980685 42 1.52e-05 ttctgtgact cagagagg ttgagtaaca chr6:12014364-12014444 20 1.52e-05 atctgatctt cagagagg ttaagtaacc chr6:71553177-71553257 18 1.52e-05 aactgaggca cagagagg ttaagtgagt chr3:12737596-12737676 9 1.52e-05 ctgaggct cagagagg gatagtgatt chr9:123838083-123838163 39 1.52e-05 cactgaggac cagagagg ttaagtaatt chr2:20707627-20707707 15 1.52e-05 gaaatgggtt cagagagg ttaagtaact chr11:36149284-36149364 27 1.52e-05 tgtaagggct cagagagg ttaagtgacc chr11:45843905-45843985 19 1.52e-05 aactgaggca cagagagg ttaagtaatt chr9:37301936-37302016 60 1.52e-05 aactgagact cagagagg ttaagtattt chr17:17595748-17595828 45 1.52e-05 aactgaagca cagagagg ttaagtgatc chr5:89932910-89932990 63 1.52e-05 aaattaggat cagagagg ttaagtaact chr16:26727437-26727517 36 1.52e-05 aatggaagca cagagagg ttaagcaact chr8:48175659-48175739 42 1.52e-05 tgaggctcag cagagagg ctaagtaatt chr16:84293451-84293531 30 1.52e-05 aacagaagct cagagagg tcaagcaact chr7:139683231-139683311 7 1.52e-05 gaggct cagagagg ttaagtgttt chr19:1812115-1812195 13 1.52e-05 GGGTGGAGCC CAGAGAGG GTGCGCGGGC chrX:117897614-117897694 14 1.52e-05 aactaaggct cagagagg ttaagtaact chr16:55086409-55086489 17 1.52e-05 aactgaggca cagagagg tcaagtcact chr17:77927300-77927380 16 1.52e-05 aactggggcc cagagagg ttaagtaatt chr2:20811908-20811988 22 1.52e-05 aattggggca cagagagg ttaagtaact chr16:20122633-20122713 18 1.52e-05 ccctgatgtt cagagagg ttaagtaact chr7:99224420-99224500 41 1.52e-05 atgtaaggct cagagagg ttaattgatt chr6:83451211-83451291 4 1.52e-05 gca cagagagg ttaagacact chr3:170868880-170868960 54 1.52e-05 agctgaggtt cagagagg ttaagtaatt chr7:151327585-151327665 47 1.52e-05 aaccaaggca cagagagg ttaagtaact chr2:16921199-16921279 35 1.52e-05 aactgaagcc cagagagg ttaagtaact chr15:64203523-64203603 6 1.52e-05 cagca cagagagg ttaagtaatt chr17:31440787-31440867 19 1.52e-05 aaccaaggcc cagagagg ttaagtgact chr11:60493238-60493318 38 3.11e-05 ctctgagcct cagagagt ttgcccgaga chr1:41159314-41159394 2 3.11e-05 t cagagagt ttaagtagct chr6:17878467-17878547 43 3.11e-05 ggcactgggg cagagagt gcctgtgtgt chr1:201647527-201647607 73 4.74e-05 tgttgaggca cagagaag chr11:45854766-45854846 46 4.74e-05 aactgcagct cagagaag gtaagtaact chr2:178568061-178568141 9 4.74e-05 acagggct cagagaag ttaagtaact chr3:57261670-57261750 59 7.78e-05 GGAGGCGGGG CAGGGAGG CCGAGGGGGC chr5:173123354-173123434 4 7.78e-05 tgc cagggagg acggtaaaat chr12:114042649-11404272 22 7.78e-05 aactgaggct cagagaga tgaaatcact chr7:116281967-116282047 36 7.78e-05 aactaagtca cagagaga taagtaacct chr3:152781305-152781385 3 9.26e-05 ta cagacagg acaactaaga chr1:201558436-201558516 15 1.09e-04 TCCCATGTTA CAGATAGG GAAAggagaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:93735366-93735446 1.5e-05 67_[+4]_5 chr16:10980605-10980685 1.5e-05 41_[+4]_31 chr6:12014364-12014444 1.5e-05 19_[+4]_53 chr6:71553177-71553257 1.5e-05 17_[+4]_55 chr3:12737596-12737676 1.5e-05 8_[+4]_64 chr9:123838083-123838163 1.5e-05 38_[+4]_34 chr2:20707627-20707707 1.5e-05 14_[+4]_58 chr11:36149284-36149364 1.5e-05 26_[+4]_46 chr11:45843905-45843985 1.5e-05 18_[+4]_54 chr9:37301936-37302016 1.5e-05 59_[+4]_13 chr17:17595748-17595828 1.5e-05 44_[+4]_28 chr5:89932910-89932990 1.5e-05 62_[+4]_10 chr16:26727437-26727517 1.5e-05 35_[+4]_37 chr8:48175659-48175739 1.5e-05 41_[+4]_31 chr16:84293451-84293531 1.5e-05 29_[+4]_43 chr7:139683231-139683311 1.5e-05 6_[+4]_66 chr19:1812115-1812195 1.5e-05 12_[+4]_60 chrX:117897614-117897694 1.5e-05 13_[+4]_59 chr16:55086409-55086489 1.5e-05 16_[+4]_56 chr17:77927300-77927380 1.5e-05 15_[+4]_57 chr2:20811908-20811988 1.5e-05 21_[+4]_51 chr16:20122633-20122713 1.5e-05 17_[+4]_55 chr7:99224420-99224500 1.5e-05 40_[+4]_32 chr6:83451211-83451291 1.5e-05 3_[+4]_69 chr3:170868880-170868960 1.5e-05 53_[+4]_19 chr7:151327585-151327665 1.5e-05 46_[+4]_26 chr2:16921199-16921279 1.5e-05 34_[+4]_38 chr15:64203523-64203603 1.5e-05 5_[+4]_67 chr17:31440787-31440867 1.5e-05 18_[+4]_54 chr11:60493238-60493318 3.1e-05 37_[+4]_35 chr1:41159314-41159394 3.1e-05 1_[+4]_71 chr6:17878467-17878547 3.1e-05 42_[+4]_30 chr1:201647527-201647607 4.7e-05 72_[+4] chr11:45854766-45854846 4.7e-05 45_[+4]_27 chr2:178568061-178568141 4.7e-05 8_[+4]_64 chr3:57261670-57261750 7.8e-05 58_[+4]_14 chr5:173123354-173123434 7.8e-05 3_[+4]_69 chr12:114042649-11404272 7.8e-05 21_[+4]_51 chr7:116281967-116282047 7.8e-05 35_[+4]_37 chr3:152781305-152781385 9.3e-05 2_[+4]_70 chr1:201558436-201558516 0.00011 14_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGAGAGG width=8 seqs=41 chr12:93735366-93735446 ( 68) CAGAGAGG 1 chr16:10980605-10980685 ( 42) CAGAGAGG 1 chr6:12014364-12014444 ( 20) CAGAGAGG 1 chr6:71553177-71553257 ( 18) CAGAGAGG 1 chr3:12737596-12737676 ( 9) CAGAGAGG 1 chr9:123838083-123838163 ( 39) CAGAGAGG 1 chr2:20707627-20707707 ( 15) CAGAGAGG 1 chr11:36149284-36149364 ( 27) CAGAGAGG 1 chr11:45843905-45843985 ( 19) CAGAGAGG 1 chr9:37301936-37302016 ( 60) CAGAGAGG 1 chr17:17595748-17595828 ( 45) CAGAGAGG 1 chr5:89932910-89932990 ( 63) CAGAGAGG 1 chr16:26727437-26727517 ( 36) CAGAGAGG 1 chr8:48175659-48175739 ( 42) CAGAGAGG 1 chr16:84293451-84293531 ( 30) CAGAGAGG 1 chr7:139683231-139683311 ( 7) CAGAGAGG 1 chr19:1812115-1812195 ( 13) CAGAGAGG 1 chrX:117897614-117897694 ( 14) CAGAGAGG 1 chr16:55086409-55086489 ( 17) CAGAGAGG 1 chr17:77927300-77927380 ( 16) CAGAGAGG 1 chr2:20811908-20811988 ( 22) CAGAGAGG 1 chr16:20122633-20122713 ( 18) CAGAGAGG 1 chr7:99224420-99224500 ( 41) CAGAGAGG 1 chr6:83451211-83451291 ( 4) CAGAGAGG 1 chr3:170868880-170868960 ( 54) CAGAGAGG 1 chr7:151327585-151327665 ( 47) CAGAGAGG 1 chr2:16921199-16921279 ( 35) CAGAGAGG 1 chr15:64203523-64203603 ( 6) CAGAGAGG 1 chr17:31440787-31440867 ( 19) CAGAGAGG 1 chr11:60493238-60493318 ( 38) CAGAGAGT 1 chr1:41159314-41159394 ( 2) CAGAGAGT 1 chr6:17878467-17878547 ( 43) CAGAGAGT 1 chr1:201647527-201647607 ( 73) CAGAGAAG 1 chr11:45854766-45854846 ( 46) CAGAGAAG 1 chr2:178568061-178568141 ( 9) CAGAGAAG 1 chr3:57261670-57261750 ( 59) CAGGGAGG 1 chr5:173123354-173123434 ( 4) CAGGGAGG 1 chr12:114042649-11404272 ( 22) CAGAGAGA 1 chr7:116281967-116282047 ( 36) CAGAGAGA 1 chr3:152781305-152781385 ( 3) CAGACAGG 1 chr1:201558436-201558516 ( 15) CAGATAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.07398 E= 4.0e-038 -1200 207 -1200 -1200 193 -1200 -1200 -1200 -1200 -1200 204 -1200 186 -1200 -232 -1200 -1200 -329 196 -339 193 -1200 -1200 -1200 -184 -1200 193 -1200 -243 -1200 185 -180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 4.0e-038 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.951220 0.000000 0.048780 0.000000 0.000000 0.024390 0.951220 0.024390 1.000000 0.000000 0.000000 0.000000 0.073171 0.000000 0.926829 0.000000 0.048780 0.000000 0.878049 0.073171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 regular expression -------------------------------------------------------------------------------- CAGAGAGG -------------------------------------------------------------------------------- Time 15.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGTGTG MEME-5 width = 8 sites = 34 llr = 332 E-value = 4.4e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:1::::: pos.-specific C 1a:::::: probability G 9::a:9:a matrix T ::9:a:a: bits 2.1 * * 1.9 * ** ** 1.7 * ***** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:39679311-39679391 19 1.42e-05 ccatgtagtt gctgtgtg gccttggaca chr7:75361424-75361504 34 1.42e-05 cggttcactc gctgtgtg accttggaca chr9:135141557-135141637 29 1.42e-05 GTatttactt gctgtgtg accttggtca chr5:76019218-76019298 23 1.42e-05 ctacttcata gctgtgtg actttggatt chr3:4697120-4697200 9 1.42e-05 tatgagct gctgtgtg accttggaca chr1:18571412-18571492 10 1.42e-05 cacttagaa gctgtgtg acttttaaca chr16:25783718-25783798 16 1.42e-05 ctgtgtttat gctgtgtg atcccgggta chr12:102246945-10224702 71 1.42e-05 ttacaaggct gctgtgtg ga chr6:148065304-148065384 25 1.42e-05 ctatttacta gctgtgtg accttaggta chr7:75364572-75364652 56 1.42e-05 ACCGtttcca gctgtgtg acttctggtg chr1:117236487-117236567 23 1.42e-05 gaatgaggtg gctgtgtG GCTGAAGCAA chr16:23940707-23940787 22 1.42e-05 ccatttcctt gctgtgtg gtcttaggca chr5:145087900-145087980 3 1.42e-05 tg gctgtgtg accttaagca chr5:145322468-145322548 25 1.42e-05 ttgtttgtta gctgtgtg gccttaggca chr5:5703197-5703277 29 1.42e-05 gaatttactg gctgtgtg atcttgtact chr6:15899090-15899170 33 1.42e-05 TTGAACTCCA GCTGTGTG Atctttggcc chr3:71302474-71302554 2 1.42e-05 g gctgtgtg atcttgagta chrX:30281039-30281119 18 1.42e-05 ccatttacta gctgtgtg atcttgtgta chr5:90608668-90608748 36 1.42e-05 agtttgtgga gctgtgtg accttcaata chr5:125874421-125874501 16 1.42e-05 tcatttatca gctgtgtg acttggggaa chr12:114667098-11466717 32 1.42e-05 tacttttctg gctgtgtg acttttggca chr6:16282719-16282799 36 1.42e-05 catttttata gctgtgtg accttaggag chr4:10462187-10462267 30 2.86e-05 aaaaggaaag gcagtgtg gATTTAGATC chr7:2443452-2443532 33 2.86e-05 GCGCCGGCGC GCAGTGTG ACCTTGGCCC chr19:972389-972469 60 2.86e-05 TGGCCCCACA GCAGTGTG GGCCGATCCT chr6:17878467-17878547 52 4.24e-05 gcagagagtg cctgtgtg ttcaaggaCT chr13:52531012-52531092 28 4.24e-05 ttactgaata cctgtgtg accttgggcc chr5:172192899-172192979 37 5.76e-05 tccacggccc actgtgtg ccaggcactt chr4:56221873-56221953 49 5.76e-05 Gctgtcactt actgtgtg acattgaata chr8:139846812-139846892 16 1.12e-04 ctatatcttt gctgggtg accttaggca chr17:48637960-48638040 61 1.12e-04 TGGCTGCGGG GCTGTCTG GGGGCGGGGC chr9:136344275-136344355 13 1.12e-04 GCCGCTATTG GCTGTGGG ACGGCCCTGC chr2:208293443-208293523 44 1.12e-04 tttcttactg gctctgtg actttggata chr6:35698691-35698771 18 1.27e-04 ccaacactta gctgtttg gccctgggta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:39679311-39679391 1.4e-05 18_[+5]_54 chr7:75361424-75361504 1.4e-05 33_[+5]_39 chr9:135141557-135141637 1.4e-05 28_[+5]_44 chr5:76019218-76019298 1.4e-05 22_[+5]_50 chr3:4697120-4697200 1.4e-05 8_[+5]_64 chr1:18571412-18571492 1.4e-05 9_[+5]_63 chr16:25783718-25783798 1.4e-05 15_[+5]_57 chr12:102246945-10224702 1.4e-05 70_[+5]_2 chr6:148065304-148065384 1.4e-05 24_[+5]_48 chr7:75364572-75364652 1.4e-05 55_[+5]_17 chr1:117236487-117236567 1.4e-05 22_[+5]_50 chr16:23940707-23940787 1.4e-05 21_[+5]_51 chr5:145087900-145087980 1.4e-05 2_[+5]_70 chr5:145322468-145322548 1.4e-05 24_[+5]_48 chr5:5703197-5703277 1.4e-05 28_[+5]_44 chr6:15899090-15899170 1.4e-05 32_[+5]_40 chr3:71302474-71302554 1.4e-05 1_[+5]_71 chrX:30281039-30281119 1.4e-05 17_[+5]_55 chr5:90608668-90608748 1.4e-05 35_[+5]_37 chr5:125874421-125874501 1.4e-05 15_[+5]_57 chr12:114667098-11466717 1.4e-05 31_[+5]_41 chr6:16282719-16282799 1.4e-05 35_[+5]_37 chr4:10462187-10462267 2.9e-05 29_[+5]_43 chr7:2443452-2443532 2.9e-05 32_[+5]_40 chr19:972389-972469 2.9e-05 59_[+5]_13 chr6:17878467-17878547 4.2e-05 51_[+5]_21 chr13:52531012-52531092 4.2e-05 27_[+5]_45 chr5:172192899-172192979 5.8e-05 36_[+5]_36 chr4:56221873-56221953 5.8e-05 48_[+5]_24 chr8:139846812-139846892 0.00011 15_[+5]_57 chr17:48637960-48638040 0.00011 60_[+5]_12 chr9:136344275-136344355 0.00011 12_[+5]_60 chr2:208293443-208293523 0.00011 43_[+5]_29 chr6:35698691-35698771 0.00013 17_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGTGTG width=8 seqs=34 chr17:39679311-39679391 ( 19) GCTGTGTG 1 chr7:75361424-75361504 ( 34) GCTGTGTG 1 chr9:135141557-135141637 ( 29) GCTGTGTG 1 chr5:76019218-76019298 ( 23) GCTGTGTG 1 chr3:4697120-4697200 ( 9) GCTGTGTG 1 chr1:18571412-18571492 ( 10) GCTGTGTG 1 chr16:25783718-25783798 ( 16) GCTGTGTG 1 chr12:102246945-10224702 ( 71) GCTGTGTG 1 chr6:148065304-148065384 ( 25) GCTGTGTG 1 chr7:75364572-75364652 ( 56) GCTGTGTG 1 chr1:117236487-117236567 ( 23) GCTGTGTG 1 chr16:23940707-23940787 ( 22) GCTGTGTG 1 chr5:145087900-145087980 ( 3) GCTGTGTG 1 chr5:145322468-145322548 ( 25) GCTGTGTG 1 chr5:5703197-5703277 ( 29) GCTGTGTG 1 chr6:15899090-15899170 ( 33) GCTGTGTG 1 chr3:71302474-71302554 ( 2) GCTGTGTG 1 chrX:30281039-30281119 ( 18) GCTGTGTG 1 chr5:90608668-90608748 ( 36) GCTGTGTG 1 chr5:125874421-125874501 ( 16) GCTGTGTG 1 chr12:114667098-11466717 ( 32) GCTGTGTG 1 chr6:16282719-16282799 ( 36) GCTGTGTG 1 chr4:10462187-10462267 ( 30) GCAGTGTG 1 chr7:2443452-2443532 ( 33) GCAGTGTG 1 chr19:972389-972469 ( 60) GCAGTGTG 1 chr6:17878467-17878547 ( 52) CCTGTGTG 1 chr13:52531012-52531092 ( 28) CCTGTGTG 1 chr5:172192899-172192979 ( 37) ACTGTGTG 1 chr4:56221873-56221953 ( 49) ACTGTGTG 1 chr8:139846812-139846892 ( 16) GCTGGGTG 1 chr17:48637960-48638040 ( 61) GCTGTCTG 1 chr9:136344275-136344355 ( 13) GCTGTGGG 1 chr2:208293443-208293523 ( 44) GCTCTGTG 1 chr6:35698691-35698771 ( 18) GCTGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.13512 E= 4.4e-024 -216 -202 186 -1173 -1173 207 -1173 -1173 -157 -1173 -1173 183 -1173 -302 199 -1173 -1173 -1173 -305 192 -1173 -302 195 -312 -1173 -1173 -305 192 -1173 -1173 204 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 4.4e-024 0.058824 0.058824 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 0.088235 0.000000 0.000000 0.911765 0.000000 0.029412 0.970588 0.000000 0.000000 0.000000 0.029412 0.970588 0.000000 0.029412 0.941176 0.029412 0.000000 0.000000 0.029412 0.970588 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-5 regular expression -------------------------------------------------------------------------------- GCTGTGTG -------------------------------------------------------------------------------- Time 18.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:132313326-13231340 4.72e-04 2_[+1(7.56e-05)]_70 chr6:21955565-21955645 2.53e-02 80 chr19:6935813-6935893 2.07e-01 80 chr3:37802671-37802751 2.25e-02 80 chr22:43739382-43739462 5.45e-01 80 chr4:26596655-26596735 4.42e-03 80 chr13:52531012-52531092 1.76e-03 27_[+5(4.24e-05)]_20_[+3(5.41e-05)]_\ 17 chr3:154463081-154463161 1.77e-01 80 chr10:102430915-10243099 2.53e-01 80 chr6:164239904-164239984 3.92e-02 80 chr6:136935630-136935710 1.18e-02 47_[+1(1.52e-05)]_25 chr6:151768557-151768637 2.11e-04 5_[+1(7.56e-05)]_10_[+2(1.71e-05)]_\ 49 chr4:38328920-38329000 4.89e-01 80 chr11:34861659-34861739 9.73e-01 80 chr2:178568061-178568141 1.26e-02 8_[+4(4.74e-05)]_64 chr7:130592439-130592519 1.68e-01 80 chr6:107275149-107275229 8.41e-01 80 chr19:972389-972469 9.73e-03 59_[+5(2.86e-05)]_13 chr4:185290059-185290139 2.59e-01 80 chr16:21201508-21201588 2.38e-01 80 chr16:86306499-86306579 7.62e-01 80 chr17:31440787-31440867 8.87e-05 18_[+4(1.52e-05)]_39_[+2(1.71e-05)]_\ 7 chr16:15576765-15576845 3.85e-04 6_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 48 chr1:30982709-30982789 1.82e-01 80 chr15:64203523-64203603 1.18e-02 5_[+4(1.52e-05)]_67 chr18:32677934-32678014 2.46e-02 28_[+1(6.15e-05)]_44 chr2:16921199-16921279 6.41e-06 5_[+1(9.19e-05)]_21_[+4(1.52e-05)]_\ 38 chr16:13996087-13996167 1.15e-01 80 chr7:151327585-151327665 1.24e-03 46_[+4(1.52e-05)]_26 chr6:17878467-17878547 7.14e-04 42_[+4(3.11e-05)]_1_[+5(4.24e-05)]_\ 21 chr1:68234297-68234377 1.26e-03 67_[+2(1.71e-05)]_5 chr2:152626286-152626366 4.04e-01 80 chr8:86971020-86971100 9.13e-05 1_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 53 chr3:170868880-170868960 1.06e-02 53_[+4(1.52e-05)]_19 chr6:83451211-83451291 2.62e-03 3_[+4(1.52e-05)]_69 chr12:71080847-71080927 9.09e-01 80 chr7:116281967-116282047 4.04e-05 6_[+1(1.52e-05)]_21_[+4(7.78e-05)]_\ 37 chr6:16282719-16282799 9.88e-04 23_[+1(9.19e-05)]_4_[+5(1.42e-05)]_\ 37 chr7:99224420-99224500 1.55e-04 11_[+1(9.19e-05)]_21_[+4(1.52e-05)]_\ 32 chr9:123655236-123655316 1.72e-02 55_[+1(6.15e-05)]_17 chr16:20122633-20122713 9.42e-03 17_[+4(1.52e-05)]_55 chr21:45662518-45662598 1.64e-01 80 chr8:26051493-26051573 5.49e-01 80 chr2:208293443-208293523 5.65e-03 71_[+3(5.41e-05)]_1 chr9:136344275-136344355 4.00e-02 80 chr11:11643593-11643673 7.50e-01 80 chr15:29256460-29256540 2.00e-01 80 chr3:49447698-49447778 1.31e-02 30_[+1(6.15e-05)]_42 chr12:111124508-11112458 1.67e-01 80 chr2:65249497-65249577 1.53e-02 59_[+2(6.93e-05)]_13 chr2:20811908-20811988 1.63e-03 21_[+4(1.52e-05)]_51 chr1:158698464-158698544 2.29e-03 30_[+1(6.15e-05)]_42 chrX:129309053-129309133 2.72e-05 1_[+3(5.41e-05)]_33_[+1(1.52e-05)]_\ 30 chr7:133872804-133872884 2.26e-02 80 chr12:11920113-11920193 9.37e-04 42_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 12 chr22:29703248-29703328 1.43e-02 19_[+3(5.41e-05)]_53 chr12:76497919-76497999 4.16e-03 16_[+1(1.52e-05)]_56 chr11:73492526-73492606 5.28e-01 80 chr17:77927300-77927380 7.33e-04 15_[+4(1.52e-05)]_57 chr17:35785528-35785608 2.36e-02 20_[+1(1.52e-05)]_52 chr20:51808673-51808753 2.07e-02 80 chr16:8768378-8768458 1.33e-01 80 chr16:55086409-55086489 9.78e-05 5_[+2(1.71e-05)]_3_[+4(1.52e-05)]_\ 56 chr1:61735944-61736024 2.44e-03 14_[+1(9.19e-05)]_10_[+2(1.71e-05)]_\ 40 chr22:30724219-30724299 3.23e-03 15_[+1(1.52e-05)]_57 chr20:17906716-17906796 5.94e-03 48_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 6 chr12:114667098-11466717 8.32e-05 31_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 3_[+1(6.15e-05)]_2 chr5:125874421-125874501 3.30e-05 15_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 3_[+1(6.15e-05)]_18 chr9:101864243-101864323 8.56e-02 80 chr9:125024555-125024635 2.89e-03 50_[+2(6.93e-05)]_22 chr5:90608668-90608748 1.40e-03 35_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 9 chr12:93894136-93894216 3.69e-01 80 chr9:129305932-129306012 1.14e-01 80 chr12:127674696-12767477 4.44e-02 27_[+3(5.41e-05)]_45 chr2:220339222-220339302 3.05e-03 1_[+1(1.52e-05)]_71 chr12:114042649-11404272 2.97e-04 10_[+2(1.71e-05)]_3_[+4(7.78e-05)]_\ 51 chr7:2443452-2443532 2.79e-03 32_[+5(2.86e-05)]_19_[+3(5.41e-05)]_\ 13 chr3:12784328-12784408 6.31e-04 80 chrX:30281039-30281119 3.27e-03 17_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 27 chrX:117897614-117897694 1.08e-03 13_[+4(1.52e-05)]_19_[+3(9.51e-05)]_\ 32 chr7:73632780-73632860 1.75e-02 4_[+1(9.19e-05)]_68 chr3:71302474-71302554 4.92e-04 1_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 43 chr4:75197821-75197901 4.67e-03 31_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 23 chr6:157875163-157875243 4.83e-01 80 chr19:1450000-1450080 7.68e-01 80 chr7:86697260-86697340 1.30e-02 45_[+1(9.19e-05)]_27 chr16:22231166-22231246 5.49e-01 80 chr1:17445946-17446026 1.89e-02 80 chr6:158386577-158386657 7.11e-01 80 chr17:40834186-40834266 1.68e-02 27_[+3(5.41e-05)]_45 chr10:63556680-63556760 4.10e-03 60_[+2(1.71e-05)]_12 chr21:35389757-35389837 1.38e-02 1_[+1(7.56e-05)]_71 chr11:32441865-32441945 1.30e-02 10_[+1(6.15e-05)]_62 chr19:1812115-1812195 3.55e-03 12_[+4(1.52e-05)]_60 chr4:140410952-140411032 7.45e-01 80 chr1:14975875-14975955 2.04e-02 80 chr21:31121733-31121813 4.84e-03 80 chr16:27562003-27562083 2.42e-03 54_[+1(9.19e-05)]_10_[+2(1.71e-05)] chr9:95821084-95821164 1.44e-03 68_[+1(7.56e-05)]_4 chr18:53261312-53261392 2.28e-01 80 chrX:3631346-3631426 7.87e-01 80 chr6:15899090-15899170 4.22e-04 32_[+5(1.42e-05)]_40 chr3:24406018-24406098 3.05e-02 3_[+2(1.71e-05)]_69 chr5:5703197-5703277 2.18e-03 28_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 16 chr5:145322468-145322548 4.62e-05 24_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 3_[+1(6.15e-05)]_9 chr1:15135381-15135461 2.12e-01 65_[+1(7.56e-05)]_7 chr3:171555607-171555687 3.21e-02 37_[+1(6.15e-05)]_35 chr12:53770690-53770770 1.43e-01 55_[+1(6.15e-05)]_17 chr11:45854766-45854846 1.71e-04 16_[+1(9.19e-05)]_21_[+4(4.74e-05)]_\ 19_[+3(9.51e-05)] chr6:13633733-13633813 1.51e-05 10_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 44 chr5:137443083-137443163 1.21e-03 14_[+2(1.71e-05)]_58 chr5:173123354-173123434 1.87e-04 3_[+4(7.78e-05)]_33_[+2(1.71e-05)]_\ 28 chr19:35710063-35710143 1.27e-01 80 chr17:48637960-48638040 1.05e-01 80 chr4:6271455-6271535 8.80e-02 32_[+3(5.41e-05)]_40 chr6:130071781-130071861 1.51e-02 7_[+1(6.15e-05)]_65 chr5:145087900-145087980 1.23e-03 2_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 42 chr7:139683231-139683311 2.40e-04 6_[+4(1.52e-05)]_66 chr16:23940707-23940787 4.24e-05 21_[+5(1.42e-05)]_19_[+3(5.41e-05)]_\ 3_[+1(6.15e-05)]_13 chr11:20048345-20048425 1.01e-01 39_[+2(6.93e-05)]_33 chr1:117236487-117236567 8.62e-03 22_[+5(1.42e-05)]_50 chr11:69212630-69212710 5.42e-02 80 chr16:84293451-84293531 3.89e-04 29_[+4(1.52e-05)]_43 chr8:48175659-48175739 8.09e-07 9_[+1(4.59e-05)]_10_[+2(1.71e-05)]_\ 6_[+4(1.52e-05)]_31 chr20:34360200-34360280 1.89e-01 80 chrX:1571753-1571833 8.33e-01 80 chr8:41653678-41653758 3.85e-06 26_[+3(5.41e-05)]_4_[+1(7.56e-05)]_\ 10_[+2(1.71e-05)]_16 chr16:81788599-81788679 6.91e-04 8_[+3(5.41e-05)]_64 chr1:54204928-54205008 3.90e-01 80 chr1:226712401-226712481 3.07e-01 80 chr3:72203689-72203769 8.09e-01 80 chr11:18380314-18380394 6.61e-06 9_[+3(5.41e-05)]_25_[+1(1.52e-05)]_\ 10_[+2(1.71e-05)]_12 chr9:131962709-131962789 8.82e-02 80 chr1:59396847-59396927 7.39e-04 42_[+1(7.56e-05)]_10_[+2(1.71e-05)]_\ 12 chr22:36937905-36937985 8.70e-04 80 chr7:75364572-75364652 1.22e-02 55_[+5(1.42e-05)]_17 chr6:148065304-148065384 7.57e-04 24_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 20 chr13:107188053-10718813 5.46e-01 80 chr4:81049328-81049408 4.19e-03 54_[+1(6.15e-05)]_10_[+2(6.93e-05)] chr6:4168200-4168280 6.11e-01 80 chr17:43955033-43955113 2.14e-01 80 chr7:3083335-3083415 4.97e-01 80 chr8:94754475-94754555 8.43e-05 11_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 43 chr16:26727437-26727517 1.55e-04 35_[+4(1.52e-05)]_37 chr17:62380069-62380149 5.43e-04 4_[+3(5.41e-05)]_20_[+2(6.93e-05)]_\ 40 chr3:152781305-152781385 6.73e-02 2_[+4(9.26e-05)]_70 chr5:89932910-89932990 1.83e-02 62_[+4(1.52e-05)]_10 chr19:35869458-35869538 4.72e-01 80 chr9:129699876-129699956 1.07e-02 80 chr17:27569246-27569326 3.47e-04 29_[+3(1.34e-05)]_21_[+2(6.93e-05)]_\ 14 chr12:102246945-10224702 5.98e-05 22_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 22_[+5(1.42e-05)]_2 chr3:171096502-171096582 1.31e-03 36_[+1(1.52e-05)]_21_[+4(9.26e-05)]_\ 7 chr3:184289913-184289993 1.35e-03 17_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 37 chr5:173309835-173309915 1.59e-01 80 chr6:47208192-47208272 5.11e-04 7_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 47 chr20:44614827-44614907 8.15e-03 80 chr1:204674070-204674150 1.81e-02 3_[+3(5.41e-05)]_69 chr17:17595748-17595828 9.29e-05 44_[+4(1.52e-05)]_28 chr1:183958887-183958967 1.32e-02 62_[+2(6.93e-05)]_10 chr19:13388048-13388128 1.60e-01 80 chr5:134493538-134493618 1.24e-02 80 chr9:37301936-37302016 1.30e-05 8_[+4(9.26e-05)]_14_[+1(7.56e-05)]_\ 10_[+2(1.71e-05)]_3_[+4(1.52e-05)]_13 chr11:45843905-45843985 3.25e-04 7_[+2(8.53e-05)]_3_[+4(1.52e-05)]_\ 54 chr11:36149284-36149364 4.37e-03 26_[+4(1.52e-05)]_46 chr1:201558436-201558516 2.24e-03 68_[+2(6.93e-05)]_4 chr10:135186893-13518697 1.05e-01 80 chr11:12210273-12210353 1.89e-01 80 chr11:46230523-46230603 6.10e-01 80 chrX:106918529-106918609 1.19e-03 53_[+3(5.41e-05)]_19 chr1:201647527-201647607 7.29e-05 43_[+1(1.52e-05)]_21_[+4(4.74e-05)] chr1:895967-896047 1.56e-01 80 chr1:149855599-149855679 9.06e-03 16_[+2(6.93e-05)]_56 chr2:20707627-20707707 4.08e-04 14_[+4(1.52e-05)]_58 chr8:68991649-68991729 1.98e-02 80 chr12:71002170-71002250 6.38e-05 7_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 47 chr4:13528447-13528527 3.66e-03 34_[+2(1.71e-05)]_38 chr11:45848821-45848901 1.97e-02 11_[+3(5.41e-05)]_61 chr20:591029-591109 7.08e-01 80 chr19:16677678-16677758 1.13e-02 80 chr19:3364633-3364713 3.49e-02 80 chr9:108457696-108457776 1.23e-01 80 chr7:856173-856253 9.91e-01 80 chr5:54049709-54049789 5.01e-03 60_[+1(6.15e-05)]_12 chr6:106893529-106893609 6.20e-04 17_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 37 chr6:17866743-17866823 2.69e-04 18_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 36 chr12:111845998-11184607 5.31e-03 20_[+1(6.15e-05)]_52 chr13:20532759-20532839 2.37e-01 80 chr9:123838083-123838163 2.47e-05 38_[+4(1.52e-05)]_34 chr21:36396514-36396594 2.92e-03 42_[+1(1.52e-05)]_30 chr19:4238954-4239034 1.21e-01 80 chr20:45827165-45827245 8.88e-04 20_[+2(1.71e-05)]_52 chr12:24864671-24864751 7.59e-01 80 chr19:45539165-45539245 2.97e-01 80 chr1:41159314-41159394 8.75e-04 1_[+4(3.11e-05)]_71 chr6:35698691-35698771 9.43e-04 45_[+3(5.41e-05)]_27 chr3:12737596-12737676 7.49e-03 8_[+4(1.52e-05)]_64 chr6:71553177-71553257 5.72e-05 6_[+2(1.71e-05)]_3_[+4(1.52e-05)]_\ 40_[+2(5.18e-05)]_7 chr19:48111951-48112031 2.74e-01 80 chr3:152362426-152362506 5.82e-01 80 chr5:180248708-180248788 2.21e-02 45_[+2(6.93e-05)]_27 chr19:17635589-17635669 1.43e-01 80 chr10:63582003-63582083 3.99e-03 25_[+2(6.93e-05)]_47 chr3:100211337-100211417 3.56e-01 80 chr6:12014364-12014444 2.62e-03 19_[+4(1.52e-05)]_19_[+3(9.51e-05)]_\ 26 chr11:36214684-36214764 7.67e-02 16_[+2(6.93e-05)]_56 chr16:25783718-25783798 2.36e-03 15_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 29 chr1:25868130-25868210 5.56e-01 80 chr1:18571412-18571492 3.17e-05 9_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 35 chr15:67093726-67093806 1.57e-02 59_[+1(1.52e-05)]_13 chr3:4697120-4697200 9.90e-04 8_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 36 chr15:64194631-64194711 3.50e-01 80 chr12:112857736-11285781 1.11e-01 80 chr6:34546592-34546672 6.01e-01 80 chr7:13030249-13030329 4.93e-01 80 chr16:27278683-27278763 2.71e-03 50_[+2(1.71e-05)]_22 chr8:126555736-126555816 2.46e-01 80 chr14:81902812-81902892 5.08e-01 80 chr12:117536917-11753699 2.81e-01 80 chr1:39280974-39281054 2.64e-04 32_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 22 chr11:88013973-88014053 1.73e-03 49_[+1(6.15e-05)]_10_[+2(6.93e-05)]_\ 5 chr3:57261670-57261750 6.54e-02 58_[+4(7.78e-05)]_14 chr16:4743571-4743651 9.15e-01 80 chr5:76019218-76019298 1.21e-03 22_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 22 chr9:140446289-140446369 8.29e-01 80 chr1:11125204-11125284 1.92e-01 80 chr3:4261002-4261082 2.74e-04 [+1(1.52e-05)]_72 chr19:19554816-19554896 3.60e-03 28_[+1(1.52e-05)]_44 chr4:56221873-56221953 4.32e-02 48_[+5(5.76e-05)]_24 chr9:135141557-135141637 2.52e-04 28_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 16 chr2:172737424-172737504 1.49e-02 65_[+2(6.93e-05)]_7 chr14:78104290-78104370 3.14e-01 80 chr11:60493238-60493318 5.27e-04 24_[+3(5.41e-05)]_5_[+4(3.11e-05)]_\ 35 chr12:121379388-12137946 4.99e-02 80 chr7:75361424-75361504 1.06e-03 33_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 11 chr4:10462187-10462267 6.06e-02 29_[+5(2.86e-05)]_43 chr16:11254673-11254753 3.03e-03 55_[+1(9.19e-05)]_17 chr1:212462721-212462801 3.88e-02 22_[+1(1.52e-05)]_50 chr14:24739835-24739915 1.52e-04 25_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 29 chr8:139846812-139846892 2.79e-02 80 chr1:46955417-46955497 6.99e-01 80 chr20:17662967-17663047 2.48e-02 27_[+3(9.51e-05)]_45 chr12:113973052-11397313 4.13e-04 43_[+1(7.56e-05)]_10_[+2(1.71e-05)]_\ 11 chr13:73633012-73633092 1.75e-01 80 chr1:117044630-117044710 2.00e-04 13_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 41 chr17:39679311-39679391 5.17e-04 18_[+5(1.42e-05)]_20_[+3(5.41e-05)]_\ 26 chr5:172192899-172192979 2.23e-03 36_[+5(5.76e-05)]_36 chr16:10980605-10980685 2.51e-04 41_[+4(1.52e-05)]_31 chr20:22387974-22388054 5.99e-03 15_[+2(6.93e-05)]_57 chr12:93735366-93735446 6.84e-07 3_[+1(1.52e-05)]_10_[+2(1.71e-05)]_\ 3_[+4(7.78e-05)]_27_[+4(1.52e-05)]_5 chr10:97803214-97803294 4.94e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************