******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM15.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:2050750-2050830 1.0000 80 chr7:149389870-149389950 1.0000 80 chr6:32940644-32940724 1.0000 80 chr5:137803184-137803264 1.0000 80 chr19:12903181-12903261 1.0000 80 chr9:140136458-140136538 1.0000 80 chr19:13264628-13264708 1.0000 80 chr3:194048128-194048208 1.0000 80 chr9:136242400-136242480 1.0000 80 chr5:137089649-137089729 1.0000 80 chr20:48808240-48808320 1.0000 80 chr6:37138254-37138334 1.0000 80 chr14:88237680-88237760 1.0000 80 chr11:118965175-11896525 1.0000 80 chr1:202857791-202857871 1.0000 80 chr1:182360517-182360597 1.0000 80 chr11:65190843-65190923 1.0000 80 chr7:99725133-99725213 1.0000 80 chr17:79479156-79479236 1.0000 80 chr8:106331804-106331884 1.0000 80 chr18:811854-811934 1.0000 80 chr2:85766850-85766930 1.0000 80 chr5:141704213-141704293 1.0000 80 chr12:64237996-64238076 1.0000 80 chr19:3976618-3976698 1.0000 80 chr2:64880814-64880894 1.0000 80 chr3:195808455-195808535 1.0000 80 chrX:136520450-136520530 1.0000 80 chr6:119558585-119558665 1.0000 80 chr19:18390986-18391066 1.0000 80 chr2:133015263-133015343 1.0000 80 chr13:92458949-92459029 1.0000 80 chr7:75987942-75988022 1.0000 80 chr7:148845344-148845424 1.0000 80 chr10:124897229-12489730 1.0000 80 chr7:150784669-150784749 1.0000 80 chr1:27023229-27023309 1.0000 80 chr2:85766639-85766719 1.0000 80 chr4:56262295-56262375 1.0000 80 chr1:109643214-109643294 1.0000 80 chr9:139923218-139923298 1.0000 80 chr12:122238863-12223894 1.0000 80 chr5:137801578-137801658 1.0000 80 chr5:95067152-95067232 1.0000 80 chr7:66119900-66119980 1.0000 80 chr9:128003310-128003390 1.0000 80 chr7:5569914-5569994 1.0000 80 chr6:167369717-167369797 1.0000 80 chr1:35657887-35657967 1.0000 80 chr15:85524294-85524374 1.0000 80 chr19:42758918-42758998 1.0000 80 chr11:64053211-64053291 1.0000 80 chr1:179198618-179198698 1.0000 80 chr20:48807499-48807579 1.0000 80 chr6:139694878-139694958 1.0000 80 chr16:85204707-85204787 1.0000 80 chr19:39108567-39108647 1.0000 80 chr14:75745756-75745836 1.0000 80 chr6:16760239-16760319 1.0000 80 chr5:179050340-179050420 1.0000 80 chr6:7107404-7107484 1.0000 80 chr7:81343826-81343906 1.0000 80 chr20:48553023-48553103 1.0000 80 chr19:10226555-10226635 1.0000 80 chr6:2903420-2903500 1.0000 80 chr10:77155205-77155285 1.0000 80 chr10:103893013-10389309 1.0000 80 chr17:73150351-73150431 1.0000 80 chr11:64884814-64884894 1.0000 80 chr19:34895557-34895637 1.0000 80 chr17:56408469-56408549 1.0000 80 chr7:108210493-108210573 1.0000 80 chr13:91372670-91372750 1.0000 80 chr12:49524750-49524830 1.0000 80 chr11:71164421-71164501 1.0000 80 chr11:9406470-9406550 1.0000 80 chr6:16129512-16129592 1.0000 80 chr3:42922494-42922574 1.0000 80 chr8:128748536-128748616 1.0000 80 chr19:12903386-12903466 1.0000 80 chr16:56966080-56966160 1.0000 80 chr2:111879451-111879531 1.0000 80 chr6:26199288-26199368 1.0000 80 chr21:46495080-46495160 1.0000 80 chr1:234744303-234744383 1.0000 80 chr3:5229378-5229458 1.0000 80 chr22:22068318-22068398 1.0000 80 chr16:30077261-30077341 1.0000 80 chr15:20546746-20546826 1.0000 80 chr6:43737872-43737952 1.0000 80 chr4:83350599-83350679 1.0000 80 chr17:74733200-74733280 1.0000 80 chr16:685995-686075 1.0000 80 chr9:130213464-130213544 1.0000 80 chr5:60629580-60629660 1.0000 80 chr17:79479429-79479509 1.0000 80 chr6:86352132-86352212 1.0000 80 chr11:34074022-34074102 1.0000 80 chr7:120497712-120497792 1.0000 80 chr22:39715578-39715658 1.0000 80 chr12:45610068-45610148 1.0000 80 chr17:79880617-79880697 1.0000 80 chr12:125399035-12539911 1.0000 80 chr19:1438470-1438550 1.0000 80 chr6:27100989-27101069 1.0000 80 chr12:122461196-12246127 1.0000 80 chr15:52122124-52122204 1.0000 80 chr1:54955109-54955189 1.0000 80 chr6:88411398-88411478 1.0000 80 chr8:124408431-124408511 1.0000 80 chr7:35077553-35077633 1.0000 80 chr5:176918619-176918699 1.0000 80 chr17:39942675-39942755 1.0000 80 chr3:4535270-4535350 1.0000 80 chr19:13264145-13264225 1.0000 80 chr17:40021122-40021202 1.0000 80 chr19:2252133-2252213 1.0000 80 chr6:26032119-26032199 1.0000 80 chr17:73775650-73775730 1.0000 80 chr22:20918707-20918787 1.0000 80 chr18:3012967-3013047 1.0000 80 chr22:21922152-21922232 1.0000 80 chr7:106301244-106301324 1.0000 80 chr1:1309511-1309591 1.0000 80 chr3:31575053-31575133 1.0000 80 chr6:27860679-27860759 1.0000 80 chr1:45097355-45097435 1.0000 80 chr6:34203638-34203718 1.0000 80 chr11:504515-504595 1.0000 80 chr15:69745385-69745465 1.0000 80 chr8:21999159-21999239 1.0000 80 chr8:145150150-145150230 1.0000 80 chr16:90038777-90038857 1.0000 80 chr22:19435034-19435114 1.0000 80 chr3:28390300-28390380 1.0000 80 chr5:176830875-176830955 1.0000 80 chr3:47823128-47823208 1.0000 80 chr6:27115026-27115106 1.0000 80 chr12:6976792-6976872 1.0000 80 chr13:50700110-50700190 1.0000 80 chr13:90673593-90673673 1.0000 80 chr7:100183652-100183732 1.0000 80 chr10:65225680-65225760 1.0000 80 chr15:41245832-41245912 1.0000 80 chr6:35436437-35436517 1.0000 80 chr10:69834597-69834677 1.0000 80 chr19:5719761-5719841 1.0000 80 chr19:12902423-12902503 1.0000 80 chr5:179248064-179248144 1.0000 80 chr16:22308758-22308838 1.0000 80 chr2:111879664-111879744 1.0000 80 chr7:148823405-148823485 1.0000 80 chr22:19419966-19420046 1.0000 80 chr20:37063834-37063914 1.0000 80 chr20:30556351-30556431 1.0000 80 chr3:41240897-41240977 1.0000 80 chr12:49659052-49659132 1.0000 80 chr18:60189982-60190062 1.0000 80 chr6:33588370-33588450 1.0000 80 chr5:81047429-81047509 1.0000 80 chr7:6120947-6121027 1.0000 80 chr10:47656112-47656192 1.0000 80 chr6:151187689-151187769 1.0000 80 chr1:109289623-109289703 1.0000 80 chr22:20255258-20255338 1.0000 80 chr8:142441862-142441942 1.0000 80 chr1:45987384-45987464 1.0000 80 chr1:28908211-28908291 1.0000 80 chr1:205718615-205718695 1.0000 80 chr22:17082065-17082145 1.0000 80 chr2:65455068-65455148 1.0000 80 chr1:202776325-202776405 1.0000 80 chr13:52026879-52026959 1.0000 80 chr2:55647019-55647099 1.0000 80 chr16:28835095-28835175 1.0000 80 chr19:44037596-44037676 1.0000 80 chr17:64299344-64299424 1.0000 80 chr1:24018497-24018577 1.0000 80 chr11:911309-911389 1.0000 80 chr5:177631532-177631612 1.0000 80 chr10:113943553-11394363 1.0000 80 chr1:1079990-1080070 1.0000 80 chr7:134855280-134855360 1.0000 80 chr19:4584319-4584399 1.0000 80 chr1:113498652-113498732 1.0000 80 chr20:49548365-49548445 1.0000 80 chr22:21271578-21271658 1.0000 80 chr16:67063465-67063545 1.0000 80 chr2:70142377-70142457 1.0000 80 chr17:80055742-80055822 1.0000 80 chr19:2252412-2252492 1.0000 80 chr1:27022089-27022169 1.0000 80 chr2:232328628-232328708 1.0000 80 chrX:12993034-12993114 1.0000 80 chr9:127533263-127533343 1.0000 80 chr22:22505257-22505337 1.0000 80 chr8:145158732-145158812 1.0000 80 chr6:158402224-158402304 1.0000 80 chr22:19419328-19419408 1.0000 80 chr7:104653327-104653407 1.0000 80 chr15:23034203-23034283 1.0000 80 chr16:14580892-14580972 1.0000 80 chr1:184723628-184723708 1.0000 80 chr9:139258161-139258241 1.0000 80 chr19:47290851-47290931 1.0000 80 chr21:34960658-34960738 1.0000 80 chr6:105850602-105850682 1.0000 80 chr2:38829374-38829454 1.0000 80 chr1:59248503-59248583 1.0000 80 chr19:2475499-2475579 1.0000 80 chr17:45212518-45212598 1.0000 80 chr7:26240446-26240526 1.0000 80 chr12:124086630-12408671 1.0000 80 chr6:38670655-38670735 1.0000 80 chr1:23695580-23695660 1.0000 80 chr7:135347069-135347149 1.0000 80 chr1:149859304-149859384 1.0000 80 chr19:32896470-32896550 1.0000 80 chr15:20547038-20547118 1.0000 80 chr16:24550957-24551037 1.0000 80 chr16:2014686-2014766 1.0000 80 chr1:1370772-1370852 1.0000 80 chr8:145150469-145150549 1.0000 80 chr21:47601101-47601181 1.0000 80 chr21:46494085-46494165 1.0000 80 chr12:102270963-10227104 1.0000 80 chr17:80055495-80055575 1.0000 80 chr8:11660463-11660543 1.0000 80 chr7:26240148-26240228 1.0000 80 chr5:68665296-68665376 1.0000 80 chr13:91372872-91372952 1.0000 80 chr6:26056393-26056473 1.0000 80 chr6:25992864-25992944 1.0000 80 chr22:37957037-37957117 1.0000 80 chr3:156877427-156877507 1.0000 80 chr7:6098577-6098657 1.0000 80 chr17:43238631-43238711 1.0000 80 chr3:31573618-31573698 1.0000 80 chr17:40021455-40021535 1.0000 80 chr22:20849355-20849435 1.0000 80 chr19:18499496-18499576 1.0000 80 chr6:28891291-28891371 1.0000 80 chr8:22925717-22925797 1.0000 80 chr8:22926090-22926170 1.0000 80 chr19:18391189-18391269 1.0000 80 chr19:13266853-13266933 1.0000 80 chr1:90286944-90287024 1.0000 80 chr1:41708067-41708147 1.0000 80 chr20:48808445-48808525 1.0000 80 chr22:37956688-37956768 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RBM15/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBM15.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.152 C 0.354 G 0.349 T 0.144 Background letter frequencies (from file dataset with add-one prior applied): A 0.152 C 0.354 G 0.349 T 0.144 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WTTKTTTT MEME-1 width = 8 sites = 24 llr = 231 E-value = 4.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTKTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 41::3:2: pos.-specific C 1:22::2: probability G :::31::: matrix T 59856a7a bits 2.8 * 2.5 * * 2.2 * * * 2.0 * * * Relative 1.7 ** * * Entropy 1.4 ** **** (13.9 bits) 1.1 *** **** 0.8 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTTTTTTT consensus A GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:33588370-33588450 4 1.85e-07 CTT TTTTTTTT TTTTTGAAAG chr6:43737872-43737952 41 1.85e-07 CCCCCCCCTT TTTTTTTT AAAAGTCGGC chr6:119558585-119558665 2 3.80e-07 C ATTTTTTT CAGCCCCACT chr7:26240148-26240228 24 4.67e-06 TCAATAACTC ATTGATTT CAAACCCGTT chr17:45212518-45212598 24 4.67e-06 CACATTTCTG ttttatat tattataatt chr5:81047429-81047509 59 4.67e-06 GGTACCCACG ATTGATTT TTGCGGTCCT chr13:90673593-90673673 5 4.67e-06 ATTA TTTTATAT AAATGATGTG chr7:81343826-81343906 70 6.47e-06 GGTAGTTAAG ATTTTTCT AAA chr13:91372872-91372952 31 9.06e-06 TAATGGATAA ATTGTTAT GAGAAAGAAT chr5:60629580-60629660 68 9.06e-06 GCCGCCCGAG TTTTGTTT GCGCT chr8:142441862-142441942 62 1.00e-05 ATGGGCTGGG ATTCATTT GGCAGCTTCT chr12:122461196-12246127 49 1.00e-05 CGTCTCGACC CTTTATTT CGAGCCTGGA chr6:25992864-25992944 60 1.50e-05 CCCCGCGAGG CTTGTTTT CTAGCGCCTC chr9:140136458-140136538 6 2.03e-05 ACAAC TTCGTTTT CGGTGAGCCG chr6:26056393-26056473 34 2.15e-05 GATACGGCTG TTGTTTTT CTCCACATCA chr19:2475499-2475579 33 2.15e-05 CTGTCAGCCG TATTTTAT GCCATGCTCT chr12:45610068-45610148 55 2.15e-05 GATGAGCAGG AATGTTTT GCTACAAATG chr1:24018497-24018577 4 2.31e-05 GCC ATCGTTTT AGGAGCGGCT chr6:27860679-27860759 22 2.43e-05 GATGCGGGTC TTTTTGTT GTCGCGGGCT chr8:124408431-124408511 23 3.30e-05 TCGCCGCGGG TTTCTTCT GCGCCGCGCC chr16:685995-686075 13 4.81e-05 CCCGAGCCGC ATCCTTTT CCTCCGGGGC chr13:91372670-91372750 8 7.26e-05 TCTCCAG ATTCATCT CTAGTAGTTC chr1:184723628-184723708 1 7.72e-05 . TTCTGTTT CTCCTCCCTA chr1:27022089-27022169 6 9.53e-05 CGCGG CTTGTTCT CTCCCCTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:33588370-33588450 1.8e-07 3_[+1]_69 chr6:43737872-43737952 1.8e-07 40_[+1]_32 chr6:119558585-119558665 3.8e-07 1_[+1]_71 chr7:26240148-26240228 4.7e-06 23_[+1]_49 chr17:45212518-45212598 4.7e-06 23_[+1]_49 chr5:81047429-81047509 4.7e-06 58_[+1]_14 chr13:90673593-90673673 4.7e-06 4_[+1]_68 chr7:81343826-81343906 6.5e-06 69_[+1]_3 chr13:91372872-91372952 9.1e-06 30_[+1]_42 chr5:60629580-60629660 9.1e-06 67_[+1]_5 chr8:142441862-142441942 1e-05 61_[+1]_11 chr12:122461196-12246127 1e-05 48_[+1]_24 chr6:25992864-25992944 1.5e-05 59_[+1]_13 chr9:140136458-140136538 2e-05 5_[+1]_67 chr6:26056393-26056473 2.1e-05 33_[+1]_39 chr19:2475499-2475579 2.1e-05 32_[+1]_40 chr12:45610068-45610148 2.1e-05 54_[+1]_18 chr1:24018497-24018577 2.3e-05 3_[+1]_69 chr6:27860679-27860759 2.4e-05 21_[+1]_51 chr8:124408431-124408511 3.3e-05 22_[+1]_50 chr16:685995-686075 4.8e-05 12_[+1]_60 chr13:91372670-91372750 7.3e-05 7_[+1]_65 chr1:184723628-184723708 7.7e-05 [+1]_72 chr1:27022089-27022169 9.5e-05 5_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTKTTTT width=8 seqs=24 chr6:33588370-33588450 ( 4) TTTTTTTT 1 chr6:43737872-43737952 ( 41) TTTTTTTT 1 chr6:119558585-119558665 ( 2) ATTTTTTT 1 chr7:26240148-26240228 ( 24) ATTGATTT 1 chr17:45212518-45212598 ( 24) TTTTATAT 1 chr5:81047429-81047509 ( 59) ATTGATTT 1 chr13:90673593-90673673 ( 5) TTTTATAT 1 chr7:81343826-81343906 ( 70) ATTTTTCT 1 chr13:91372872-91372952 ( 31) ATTGTTAT 1 chr5:60629580-60629660 ( 68) TTTTGTTT 1 chr8:142441862-142441942 ( 62) ATTCATTT 1 chr12:122461196-12246127 ( 49) CTTTATTT 1 chr6:25992864-25992944 ( 60) CTTGTTTT 1 chr9:140136458-140136538 ( 6) TTCGTTTT 1 chr6:26056393-26056473 ( 34) TTGTTTTT 1 chr19:2475499-2475579 ( 33) TATTTTAT 1 chr12:45610068-45610148 ( 55) AATGTTTT 1 chr1:24018497-24018577 ( 4) ATCGTTTT 1 chr6:27860679-27860759 ( 22) TTTTTGTT 1 chr8:124408431-124408511 ( 23) TTTCTTCT 1 chr16:685995-686075 ( 13) ATCCTTTT 1 chr13:91372670-91372750 ( 8) ATTCATCT 1 chr1:184723628-184723708 ( 1) TTCTGTTT 1 chr1:27022089-27022169 ( 6) CTTGTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 4.5e-008 145 -150 -1123 167 -87 -1123 -1123 267 -1123 -109 -306 246 -1123 -109 -7 179 94 -1123 -207 211 -1123 -1123 -306 273 13 -109 -1123 221 -1123 -1123 -1123 279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 4.5e-008 0.416667 0.125000 0.000000 0.458333 0.083333 0.000000 0.000000 0.916667 0.000000 0.166667 0.041667 0.791667 0.000000 0.166667 0.333333 0.500000 0.291667 0.000000 0.083333 0.625000 0.000000 0.000000 0.041667 0.958333 0.166667 0.166667 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKTTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TT[TG][TA]TTT -------------------------------------------------------------------------------- Time 5.17 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGARRA MEME-2 width = 8 sites = 15 llr = 152 E-value = 8.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGARRA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 99a:8469 pos.-specific C :1:::::: probability G :::a2441 matrix T 1::::2:: bits 2.8 * 2.5 * 2.2 *** 2.0 *** * Relative 1.7 *** * * Entropy 1.4 ***** ** (14.6 bits) 1.1 ***** ** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAAGAAAA consensus GGG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGARRA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:122238863-12223894 54 6.54e-07 CGAAGCCTGT AAAGAAAA CTGGTGTTTG chr2:38829374-38829454 67 2.78e-06 TACGAGCCCC AAAGAGAA GAGTGG chr6:16129512-16129592 3 2.78e-06 CC AAAGAGAA GGCGGCTGTG chr6:88411398-88411478 57 4.28e-06 ACGGGTGACG AAAGAAGA GGGTGAGGGA chr1:182360517-182360597 25 4.28e-06 CAAGTAGTGA AAAGAAGA TCAAAACAAC chr22:22505257-22505337 22 5.70e-06 TATTCTTGAC AAAGATGA TAGTTGCAAG chr12:45610068-45610148 42 5.70e-06 GAGACATGAA AAAGATGA GCAGGAATGT chr13:92458949-92459029 38 9.15e-06 AATTTTCACT AAAGAGGA GCTGTGAGTA chr6:33588370-33588450 18 1.07e-05 TTTTTTTTTG AAAGGAAA GACGGAAGGA chr5:179050340-179050420 54 1.07e-05 AGCGTAGAGG AAAGGAAA TGGCGGCGGC chr16:90038777-90038857 21 1.82e-05 ATGCCCGATT TAAGATAA GTCTAAAGGC chr13:90673593-90673673 23 2.95e-05 AAATGATGTG ACAGAAAA ATCACTAATA chr12:49524750-49524830 54 2.95e-05 TTACGCGACA AAAGAGAG CTCCGGATAC chr10:103893013-10389309 41 2.95e-05 ACGCCACAGG AAAGAGAG GAAGCGCCTG chr3:5229378-5229458 14 5.05e-05 GGAGTTCCTT AAAGGGGA AGCGAGCCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGARRA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:122238863-12223894 6.5e-07 53_[+2]_19 chr2:38829374-38829454 2.8e-06 66_[+2]_6 chr6:16129512-16129592 2.8e-06 2_[+2]_70 chr6:88411398-88411478 4.3e-06 56_[+2]_16 chr1:182360517-182360597 4.3e-06 24_[+2]_48 chr22:22505257-22505337 5.7e-06 21_[+2]_51 chr12:45610068-45610148 5.7e-06 41_[+2]_31 chr13:92458949-92459029 9.2e-06 37_[+2]_35 chr6:33588370-33588450 1.1e-05 17_[+2]_55 chr5:179050340-179050420 1.1e-05 53_[+2]_19 chr16:90038777-90038857 1.8e-05 20_[+2]_52 chr13:90673593-90673673 3e-05 22_[+2]_50 chr12:49524750-49524830 3e-05 53_[+2]_19 chr10:103893013-10389309 3e-05 40_[+2]_32 chr3:5229378-5229458 5.1e-05 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGARRA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGARRA width=8 seqs=15 chr12:122238863-12223894 ( 54) AAAGAAAA 1 chr2:38829374-38829454 ( 67) AAAGAGAA 1 chr6:16129512-16129592 ( 3) AAAGAGAA 1 chr6:88411398-88411478 ( 57) AAAGAAGA 1 chr1:182360517-182360597 ( 25) AAAGAAGA 1 chr22:22505257-22505337 ( 22) AAAGATGA 1 chr12:45610068-45610148 ( 42) AAAGATGA 1 chr13:92458949-92459029 ( 38) AAAGAGGA 1 chr6:33588370-33588450 ( 18) AAAGGAAA 1 chr5:179050340-179050420 ( 54) AAAGGAAA 1 chr16:90038777-90038857 ( 21) TAAGATAA 1 chr13:90673593-90673673 ( 23) ACAGAAAA 1 chr12:49524750-49524830 ( 54) AAAGAGAG 1 chr10:103893013-10389309 ( 41) AAAGAGAG 1 chr3:5229378-5229458 ( 14) AAAGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGARRA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 8.2e-002 262 -1055 -1055 -111 262 -241 -1055 -1055 272 -1055 -1055 -1055 -1055 -1055 152 -1055 239 -1055 -80 -1055 139 -1055 20 47 198 -1055 20 -1055 251 -1055 -139 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGARRA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 8.2e-002 0.933333 0.000000 0.000000 0.066667 0.933333 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.400000 0.000000 0.400000 0.200000 0.600000 0.000000 0.400000 0.000000 0.866667 0.000000 0.133333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGARRA MEME-2 regular expression -------------------------------------------------------------------------------- AAAG[AG][AGT][AG]A -------------------------------------------------------------------------------- Time 9.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TTWYAABA MEME-3 width = 8 sites = 8 llr = 87 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTWYAABA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 115:aa:9 pos.-specific C :::5::3: probability G ::::::3: matrix T 9955::51 bits 2.8 ** 2.5 ** 2.2 ** ** * 2.0 ** ** * Relative 1.7 *** ** * Entropy 1.4 *** ** * (15.6 bits) 1.1 ****** * 0.8 ****** * 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTACAATA consensus TT C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWYAABA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:26240148-26240228 12 1.55e-06 GCCATGCCCT TTTCAATA ACTCATTGAT chr3:41240897-41240977 69 3.73e-06 TCTGCGCGAC TTATAAGA GCTC chr6:119558585-119558665 41 3.73e-06 TCCGTGGTAC TTTTAAGA GGGAGTCACT chr17:45212518-45212598 34 4.15e-06 ttttatatta ttataatt ataGCATACA chr13:91372872-91372952 70 5.09e-06 CAGAAACAGC TAATAATA TAT chr22:39715578-39715658 9 1.05e-05 GGCCGCCA TTACAACA CATACCATCA chrX:136520450-136520530 4 1.05e-05 tca tttcaaca accagatggc chr13:92458949-92459029 19 1.38e-05 GCACAAAAAC ATTCAATA GAATTTTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWYAABA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:26240148-26240228 1.5e-06 11_[+3]_61 chr3:41240897-41240977 3.7e-06 68_[+3]_4 chr6:119558585-119558665 3.7e-06 40_[+3]_32 chr17:45212518-45212598 4.2e-06 33_[+3]_39 chr13:91372872-91372952 5.1e-06 69_[+3]_3 chr22:39715578-39715658 1e-05 8_[+3]_64 chrX:136520450-136520530 1e-05 3_[+3]_69 chr13:92458949-92459029 1.4e-05 18_[+3]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWYAABA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTWYAABA width=8 seqs=8 chr7:26240148-26240228 ( 12) TTTCAATA 1 chr3:41240897-41240977 ( 69) TTATAAGA 1 chr6:119558585-119558665 ( 41) TTTTAAGA 1 chr17:45212518-45212598 ( 34) TTATAATT 1 chr13:91372872-91372952 ( 70) TAATAATA 1 chr22:39715578-39715658 ( 9) TTACAACA 1 chrX:136520450-136520530 ( 4) TTTCAACA 1 chr13:92458949-92459029 ( 19) ATTCAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWYAABA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 1.8e+002 -28 -965 -965 260 -28 -965 -965 260 172 -965 -965 179 -965 50 -965 179 272 -965 -965 -965 272 -965 -965 -965 -965 -50 -48 179 252 -965 -965 -21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWYAABA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.8e+002 0.125000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.500000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.500000 0.875000 0.000000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWYAABA MEME-3 regular expression -------------------------------------------------------------------------------- TT[AT][CT]AA[TCG]A -------------------------------------------------------------------------------- Time 12.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TATTACTT MEME-4 width = 8 sites = 2 llr = 29 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTACTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::a::: pos.-specific C :::::a:: probability G :::::::: matrix T a:aa::aa bits 2.8 ***** ** 2.5 ***** ** 2.2 ***** ** 2.0 ***** ** Relative 1.7 ***** ** Entropy 1.4 ******** (20.9 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TATTACTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTACTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:22505257-22505337 5 5.06e-07 TGTA TATTACTT ATTCTTGACA chr13:91372670-91372750 44 5.06e-07 GGAGAAAGAC TATTACTT GGGAACAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTACTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22505257-22505337 5.1e-07 4_[+4]_68 chr13:91372670-91372750 5.1e-07 43_[+4]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTACTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTACTT width=8 seqs=2 chr22:22505257-22505337 ( 5) TATTACTT 1 chr13:91372670-91372750 ( 44) TATTACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTACTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.2e+003 -765 -765 -765 279 271 -765 -765 -765 -765 -765 -765 279 -765 -765 -765 279 271 -765 -765 -765 -765 149 -765 -765 -765 -765 -765 279 -765 -765 -765 279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTACTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTACTT MEME-4 regular expression -------------------------------------------------------------------------------- TATTACTT -------------------------------------------------------------------------------- Time 16.61 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGWTTT MEME-5 width = 8 sites = 2 llr = 27 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGWTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa:5::: pos.-specific C :::::::: probability G :::a:::: matrix T ::::5aaa bits 2.8 *** *** 2.5 *** *** 2.2 *** *** 2.0 *** *** Relative 1.7 *** **** Entropy 1.4 ******** (19.8 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAAGATTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGWTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:104653327-104653407 19 1.08e-06 CCAGCGCCCC AAAGTTTT GCAGAGGCCG chr22:22505257-22505337 72 1.08e-06 GGACTAATGC AAAGATTT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGWTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:104653327-104653407 1.1e-06 18_[+5]_54 chr22:22505257-22505337 1.1e-06 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGWTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGWTTT width=8 seqs=2 chr7:104653327-104653407 ( 19) AAAGTTTT 1 chr22:22505257-22505337 ( 72) AAAGATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGWTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 3.9e+003 271 -765 -765 -765 271 -765 -765 -765 271 -765 -765 -765 -765 -765 151 -765 171 -765 -765 179 -765 -765 -765 279 -765 -765 -765 279 -765 -765 -765 279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGWTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.9e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGWTTT MEME-5 regular expression -------------------------------------------------------------------------------- AAAG[AT]TTT -------------------------------------------------------------------------------- Time 20.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2050750-2050830 8.04e-01 80 chr7:149389870-149389950 9.96e-01 80 chr6:32940644-32940724 4.18e-02 80 chr5:137803184-137803264 8.91e-01 80 chr19:12903181-12903261 7.37e-01 80 chr9:140136458-140136538 4.23e-03 5_[+1(2.03e-05)]_67 chr19:13264628-13264708 6.06e-01 80 chr3:194048128-194048208 7.62e-01 80 chr9:136242400-136242480 9.68e-01 80 chr5:137089649-137089729 7.70e-01 80 chr20:48808240-48808320 9.99e-01 80 chr6:37138254-37138334 8.40e-01 80 chr14:88237680-88237760 2.74e-03 80 chr11:118965175-11896525 1.50e-01 80 chr1:202857791-202857871 9.95e-01 80 chr1:182360517-182360597 4.21e-04 24_[+2(4.28e-06)]_3_[+3(7.79e-05)]_\ 37 chr11:65190843-65190923 2.46e-02 80 chr7:99725133-99725213 9.43e-01 80 chr17:79479156-79479236 9.91e-01 80 chr8:106331804-106331884 9.69e-01 80 chr18:811854-811934 7.21e-01 80 chr2:85766850-85766930 9.87e-01 80 chr5:141704213-141704293 7.19e-01 80 chr12:64237996-64238076 6.88e-01 80 chr19:3976618-3976698 6.55e-01 80 chr2:64880814-64880894 1.00e+00 80 chr3:195808455-195808535 9.44e-01 80 chrX:136520450-136520530 3.92e-03 3_[+3(1.05e-05)]_69 chr6:119558585-119558665 5.79e-09 1_[+1(3.80e-07)]_31_[+3(3.73e-06)]_\ 32 chr19:18390986-18391066 5.34e-01 80 chr2:133015263-133015343 9.02e-01 80 chr13:92458949-92459029 1.01e-07 18_[+3(1.38e-05)]_11_[+2(9.15e-06)]_\ 10_[+4(5.98e-05)]_17 chr7:75987942-75988022 9.89e-01 80 chr7:148845344-148845424 2.69e-01 80 chr10:124897229-12489730 8.77e-01 80 chr7:150784669-150784749 1.00e+00 80 chr1:27023229-27023309 2.79e-01 80 chr2:85766639-85766719 9.88e-01 80 chr4:56262295-56262375 9.54e-01 80 chr1:109643214-109643294 4.23e-01 80 chr9:139923218-139923298 9.56e-01 80 chr12:122238863-12223894 1.74e-04 53_[+2(6.54e-07)]_19 chr5:137801578-137801658 9.02e-01 80 chr5:95067152-95067232 8.42e-01 80 chr7:66119900-66119980 8.84e-02 80 chr9:128003310-128003390 3.68e-01 80 chr7:5569914-5569994 1.00e+00 80 chr6:167369717-167369797 2.49e-01 80 chr1:35657887-35657967 9.99e-01 80 chr15:85524294-85524374 2.01e-01 80 chr19:42758918-42758998 4.55e-01 80 chr11:64053211-64053291 1.62e-01 80 chr1:179198618-179198698 1.00e+00 80 chr20:48807499-48807579 9.98e-01 80 chr6:139694878-139694958 2.53e-01 80 chr16:85204707-85204787 6.21e-01 80 chr19:39108567-39108647 6.52e-01 80 chr14:75745756-75745836 1.46e-02 80 chr6:16760239-16760319 9.93e-01 80 chr5:179050340-179050420 7.14e-02 53_[+2(1.07e-05)]_19 chr6:7107404-7107484 9.87e-01 80 chr7:81343826-81343906 5.90e-06 69_[+1(6.47e-06)]_3 chr20:48553023-48553103 2.99e-01 80 chr19:10226555-10226635 5.00e-01 80 chr6:2903420-2903500 1.00e+00 80 chr10:77155205-77155285 3.67e-01 80 chr10:103893013-10389309 1.12e-01 40_[+2(2.95e-05)]_32 chr17:73150351-73150431 1.00e+00 80 chr11:64884814-64884894 9.89e-01 80 chr19:34895557-34895637 9.96e-01 80 chr17:56408469-56408549 4.10e-01 80 chr7:108210493-108210573 9.24e-01 80 chr13:91372670-91372750 4.56e-07 7_[+1(7.26e-05)]_1_[+4(5.98e-05)]_\ 19_[+4(5.06e-07)]_29 chr12:49524750-49524830 1.81e-02 53_[+2(2.95e-05)]_19 chr11:71164421-71164501 1.63e-01 80 chr11:9406470-9406550 9.75e-01 80 chr6:16129512-16129592 4.57e-04 2_[+2(2.78e-06)]_70 chr3:42922494-42922574 7.71e-01 80 chr8:128748536-128748616 7.81e-01 80 chr19:12903386-12903466 3.66e-01 80 chr16:56966080-56966160 1.00e+00 80 chr2:111879451-111879531 8.12e-01 80 chr6:26199288-26199368 3.25e-01 80 chr21:46495080-46495160 6.88e-01 80 chr1:234744303-234744383 5.80e-01 80 chr3:5229378-5229458 4.49e-02 13_[+2(5.05e-05)]_59 chr22:22068318-22068398 7.41e-01 80 chr16:30077261-30077341 9.27e-01 80 chr15:20546746-20546826 9.92e-01 80 chr6:43737872-43737952 6.26e-06 38_[+1(1.85e-07)]_34 chr4:83350599-83350679 6.54e-01 80 chr17:74733200-74733280 6.17e-01 80 chr16:685995-686075 1.38e-03 12_[+1(4.81e-05)]_60 chr9:130213464-130213544 1.26e-03 24_[+5(5.67e-06)]_48 chr5:60629580-60629660 4.02e-04 67_[+1(9.06e-06)]_5 chr17:79479429-79479509 9.99e-01 80 chr6:86352132-86352212 9.71e-01 80 chr11:34074022-34074102 9.24e-01 80 chr7:120497712-120497792 7.46e-01 80 chr22:39715578-39715658 2.86e-02 8_[+3(1.05e-05)]_64 chr12:45610068-45610148 3.00e-07 41_[+2(5.70e-06)]_5_[+1(2.15e-05)]_\ 18 chr17:79880617-79880697 1.36e-01 80 chr12:125399035-12539911 9.49e-01 80 chr19:1438470-1438550 9.45e-01 80 chr6:27100989-27101069 8.96e-01 80 chr12:122461196-12246127 4.92e-03 48_[+1(1.00e-05)]_24 chr15:52122124-52122204 7.28e-01 80 chr1:54955109-54955189 1.69e-01 80 chr6:88411398-88411478 1.04e-02 56_[+2(4.28e-06)]_16 chr8:124408431-124408511 5.03e-02 22_[+1(3.30e-05)]_50 chr7:35077553-35077633 1.43e-02 5_[+3(5.97e-05)]_67 chr5:176918619-176918699 9.84e-01 80 chr17:39942675-39942755 1.00e+00 80 chr3:4535270-4535350 8.19e-01 80 chr19:13264145-13264225 9.63e-01 80 chr17:40021122-40021202 7.10e-01 80 chr19:2252133-2252213 6.05e-01 80 chr6:26032119-26032199 9.11e-02 80 chr17:73775650-73775730 8.73e-01 80 chr22:20918707-20918787 2.73e-01 80 chr18:3012967-3013047 8.22e-01 80 chr22:21922152-21922232 3.10e-01 80 chr7:106301244-106301324 9.15e-01 80 chr1:1309511-1309591 4.35e-01 80 chr3:31575053-31575133 9.88e-01 80 chr6:27860679-27860759 5.53e-03 21_[+1(2.43e-05)]_51 chr1:45097355-45097435 7.02e-01 80 chr6:34203638-34203718 9.98e-01 80 chr11:504515-504595 9.96e-01 80 chr15:69745385-69745465 4.11e-01 80 chr8:21999159-21999239 7.01e-01 80 chr8:145150150-145150230 9.98e-01 80 chr16:90038777-90038857 1.42e-04 20_[+2(1.82e-05)]_52 chr22:19435034-19435114 1.00e+00 80 chr3:28390300-28390380 6.22e-01 80 chr5:176830875-176830955 8.43e-01 80 chr3:47823128-47823208 3.63e-02 80 chr6:27115026-27115106 8.04e-01 80 chr12:6976792-6976872 9.15e-01 80 chr13:50700110-50700190 9.85e-01 80 chr13:90673593-90673673 4.47e-07 4_[+1(4.67e-06)]_10_[+2(2.95e-05)]_\ 32_[+1(8.11e-06)]_10 chr7:100183652-100183732 1.00e+00 80 chr10:65225680-65225760 6.44e-01 80 chr15:41245832-41245912 4.42e-01 80 chr6:35436437-35436517 7.16e-01 80 chr10:69834597-69834677 9.96e-01 80 chr19:5719761-5719841 2.50e-01 80 chr19:12902423-12902503 9.99e-01 80 chr5:179248064-179248144 1.00e+00 80 chr16:22308758-22308838 8.33e-01 80 chr2:111879664-111879744 1.58e-02 80 chr7:148823405-148823485 9.98e-01 80 chr22:19419966-19420046 9.82e-01 80 chr20:37063834-37063914 5.29e-03 57_[+3(6.57e-05)]_15 chr20:30556351-30556431 9.87e-01 80 chr3:41240897-41240977 2.17e-02 68_[+3(3.73e-06)]_4 chr12:49659052-49659132 8.98e-01 80 chr18:60189982-60190062 9.91e-01 80 chr6:33588370-33588450 2.81e-09 1_[+1(1.85e-07)]_8_[+2(1.07e-05)]_\ 14_[+5(2.38e-05)]_33 chr5:81047429-81047509 5.38e-04 58_[+1(4.67e-06)]_14 chr7:6120947-6121027 9.76e-01 80 chr10:47656112-47656192 9.14e-01 80 chr6:151187689-151187769 7.19e-01 80 chr1:109289623-109289703 1.00e+00 80 chr22:20255258-20255338 9.82e-01 80 chr8:142441862-142441942 4.91e-04 61_[+1(1.00e-05)]_11 chr1:45987384-45987464 5.04e-01 80 chr1:28908211-28908291 2.41e-01 80 chr1:205718615-205718695 9.29e-01 80 chr22:17082065-17082145 9.21e-01 80 chr2:65455068-65455148 9.99e-01 80 chr1:202776325-202776405 9.41e-01 80 chr13:52026879-52026959 9.46e-01 80 chr2:55647019-55647099 3.81e-01 80 chr16:28835095-28835175 7.55e-01 80 chr19:44037596-44037676 1.00e+00 80 chr17:64299344-64299424 7.44e-01 80 chr1:24018497-24018577 1.03e-04 3_[+1(2.31e-05)]_69 chr11:911309-911389 7.38e-01 80 chr5:177631532-177631612 5.19e-01 80 chr10:113943553-11394363 8.57e-01 80 chr1:1079990-1080070 3.37e-01 80 chr7:134855280-134855360 2.47e-01 80 chr19:4584319-4584399 2.38e-01 80 chr1:113498652-113498732 3.50e-01 80 chr20:49548365-49548445 7.36e-01 80 chr22:21271578-21271658 3.14e-01 80 chr16:67063465-67063545 9.94e-01 80 chr2:70142377-70142457 1.00e+00 80 chr17:80055742-80055822 9.35e-01 80 chr19:2252412-2252492 6.93e-01 80 chr1:27022089-27022169 2.65e-02 5_[+1(9.53e-05)]_67 chr2:232328628-232328708 4.16e-01 80 chrX:12993034-12993114 2.71e-01 80 chr9:127533263-127533343 1.00e+00 80 chr22:22505257-22505337 3.24e-10 4_[+4(5.06e-07)]_9_[+2(5.70e-06)]_\ 17_[+5(8.16e-05)]_17_[+5(1.08e-06)]_1 chr8:145158732-145158812 8.77e-01 80 chr6:158402224-158402304 7.82e-01 80 chr22:19419328-19419408 9.00e-01 80 chr7:104653327-104653407 5.91e-04 18_[+5(1.08e-06)]_54 chr15:23034203-23034283 9.97e-01 80 chr16:14580892-14580972 4.75e-01 80 chr1:184723628-184723708 5.26e-02 [+1(7.72e-05)]_72 chr9:139258161-139258241 9.49e-01 80 chr19:47290851-47290931 4.33e-01 80 chr21:34960658-34960738 6.89e-01 80 chr6:105850602-105850682 4.26e-01 80 chr2:38829374-38829454 4.34e-03 66_[+2(2.78e-06)]_6 chr1:59248503-59248583 3.82e-01 80 chr19:2475499-2475579 4.17e-03 32_[+1(2.15e-05)]_40 chr17:45212518-45212598 3.77e-07 23_[+1(4.67e-06)]_2_[+3(4.15e-06)]_\ 39 chr7:26240446-26240526 4.90e-01 80 chr12:124086630-12408671 7.95e-01 80 chr6:38670655-38670735 3.51e-01 80 chr1:23695580-23695660 4.66e-01 80 chr7:135347069-135347149 8.82e-01 80 chr1:149859304-149859384 9.02e-01 80 chr19:32896470-32896550 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1.65e-01 80 chr8:22926090-22926170 8.17e-01 80 chr19:18391189-18391269 9.93e-01 80 chr19:13266853-13266933 4.48e-01 80 chr1:90286944-90287024 7.11e-01 80 chr1:41708067-41708147 6.20e-01 80 chr20:48808445-48808525 4.70e-01 80 chr22:37956688-37956768 6.52e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************