******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBBP5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:28831916-28831996 1.0000 80 chr14:21077946-21078026 1.0000 80 chr2:157256883-157256963 1.0000 80 chr8:26149296-26149376 1.0000 80 chr11:118272419-11827249 1.0000 80 chr16:14379526-14379606 1.0000 80 chrX:18693267-18693347 1.0000 80 chr1:94312312-94312392 1.0000 80 chr1:51443895-51443975 1.0000 80 chr9:35749095-35749175 1.0000 80 chr3:108308391-108308471 1.0000 80 chr17:46620877-46620957 1.0000 80 chr11:46867482-46867562 1.0000 80 chr7:138916488-138916568 1.0000 80 chr9:100174484-100174564 1.0000 80 chr9:135545678-135545758 1.0000 80 chr16:48278567-48278647 1.0000 80 chr2:28113676-28113756 1.0000 80 chr10:5734744-5734824 1.0000 80 chr6:91296657-91296737 1.0000 80 chr4:147096990-147097070 1.0000 80 chr12:96429216-96429296 1.0000 80 chr6:27598845-27598925 1.0000 80 chr2:98612227-98612307 1.0000 80 chr3:194991724-194991804 1.0000 80 chr2:30670195-30670275 1.0000 80 chr15:76630636-76630716 1.0000 80 chr16:84733702-84733782 1.0000 80 chr3:25705885-25705965 1.0000 80 chr17:71228283-71228363 1.0000 80 chr2:48667637-48667717 1.0000 80 chr1:180601434-180601514 1.0000 80 chr18:32957157-32957237 1.0000 80 chr14:24605426-24605506 1.0000 80 chr4:6718184-6718264 1.0000 80 chr20:37591067-37591147 1.0000 80 chr8:56685592-56685672 1.0000 80 chr21:34143821-34143901 1.0000 80 chr3:39148964-39149044 1.0000 80 chr2:8977594-8977674 1.0000 80 chr9:102669217-102669297 1.0000 80 chr13:48575263-48575343 1.0000 80 chr5:76787942-76788022 1.0000 80 chr10:6019474-6019554 1.0000 80 chr7:148660065-148660145 1.0000 80 chr1:21503222-21503302 1.0000 80 chr11:66115395-66115475 1.0000 80 chr1:153631252-153631332 1.0000 80 chr15:58357553-58357633 1.0000 80 chr12:108954750-10895483 1.0000 80 chr18:657852-657932 1.0000 80 chr1:154580552-154580632 1.0000 80 chr11:31531386-31531466 1.0000 80 chr2:173941106-173941186 1.0000 80 chr8:124169845-124169925 1.0000 80 chr1:235490452-235490532 1.0000 80 chr2:128051600-128051680 1.0000 80 chr22:19109389-19109469 1.0000 80 chr6:126111919-126111999 1.0000 80 chr13:41885891-41885971 1.0000 80 chr20:3451777-3451857 1.0000 80 chr1:16174727-16174807 1.0000 80 chr8:116660603-116660683 1.0000 80 chr2:231921648-231921728 1.0000 80 chr18:9613919-9613999 1.0000 80 chr22:21996681-21996761 1.0000 80 chr3:43328125-43328205 1.0000 80 chr12:69633731-69633811 1.0000 80 chr9:37801137-37801217 1.0000 80 chr1:61549212-61549292 1.0000 80 chr6:149638135-149638215 1.0000 80 chr14:104028923-10402900 1.0000 80 chr1:100315697-100315777 1.0000 80 chr1:114472664-114472744 1.0000 80 chr10:115439694-11543977 1.0000 80 chr10:124740030-12474011 1.0000 80 chr12:112546311-11254639 1.0000 80 chr3:48956331-48956411 1.0000 80 chr11:124670138-12467021 1.0000 80 chr18:29673108-29673188 1.0000 80 chr7:137686537-137686617 1.0000 80 chr8:106331780-106331860 1.0000 80 chr11:111742129-11174220 1.0000 80 chr1:235667138-235667218 1.0000 80 chr1:85666357-85666437 1.0000 80 chr5:44809412-44809492 1.0000 80 chr6:146284959-146285039 1.0000 80 chr16:67927345-67927425 1.0000 80 chr6:7313013-7313093 1.0000 80 chr9:138848223-138848303 1.0000 80 chr2:39102901-39102981 1.0000 80 chr1:7831453-7831533 1.0000 80 chr1:212459366-212459446 1.0000 80 chr10:93169862-93169942 1.0000 80 chr1:198126255-198126335 1.0000 80 chr21:40760487-40760567 1.0000 80 chr6:99841940-99842020 1.0000 80 chr15:68570474-68570554 1.0000 80 chr2:152118192-152118272 1.0000 80 chr1:47082238-47082318 1.0000 80 chr9:127951882-127951962 1.0000 80 chr7:148892922-148893002 1.0000 80 chr1:224517718-224517798 1.0000 80 chr22:21271999-21272079 1.0000 80 chr1:235490833-235490913 1.0000 80 chr2:38829445-38829525 1.0000 80 chr8:124054422-124054502 1.0000 80 chr1:16174953-16175033 1.0000 80 chr9:131085138-131085218 1.0000 80 chr4:39699815-39699895 1.0000 80 chr1:42800722-42800802 1.0000 80 chr8:57905913-57905993 1.0000 80 chr3:142166702-142166782 1.0000 80 chr5:131746591-131746671 1.0000 80 chr7:5553286-5553366 1.0000 80 chr5:44809210-44809290 1.0000 80 chr3:138663957-138664037 1.0000 80 chr17:65241130-65241210 1.0000 80 chr10:22292331-22292411 1.0000 80 chr6:27486994-27487074 1.0000 80 chr1:114354418-114354498 1.0000 80 chr1:21113042-21113122 1.0000 80 chr6:30640614-30640694 1.0000 80 chr22:22020626-22020706 1.0000 80 chr5:179160148-179160228 1.0000 80 chr6:47445282-47445362 1.0000 80 chr1:90286713-90286793 1.0000 80 chr12:72148697-72148777 1.0000 80 chr16:89723990-89724070 1.0000 80 chr11:89956188-89956268 1.0000 80 chr11:44117284-44117364 1.0000 80 chr9:113018703-113018783 1.0000 80 chr11:18610134-18610214 1.0000 80 chr6:90348302-90348382 1.0000 80 chr6:161412881-161412961 1.0000 80 chr19:13002056-13002136 1.0000 80 chr1:100504058-100504138 1.0000 80 chr5:130599479-130599559 1.0000 80 chr7:92157673-92157753 1.0000 80 chr4:142142131-142142211 1.0000 80 chr2:32503034-32503114 1.0000 80 chr3:32726869-32726949 1.0000 80 chr6:3259274-3259354 1.0000 80 chr1:202857800-202857880 1.0000 80 chr10:74385536-74385616 1.0000 80 chr1:224544855-224544935 1.0000 80 chr1:173991341-173991421 1.0000 80 chr1:207818713-207818793 1.0000 80 chr21:35446429-35446509 1.0000 80 chr2:159314028-159314108 1.0000 80 chr3:148847495-148847575 1.0000 80 chr7:140178678-140178758 1.0000 80 chr10:75911042-75911122 1.0000 80 chr22:44351370-44351450 1.0000 80 chr17:80376380-80376460 1.0000 80 chr1:75198929-75199009 1.0000 80 chr6:32940539-32940619 1.0000 80 chr1:90460774-90460854 1.0000 80 chr19:12273975-12274055 1.0000 80 chr13:31248261-31248341 1.0000 80 chr4:26322707-26322787 1.0000 80 chr5:134369233-134369313 1.0000 80 chr19:3626660-3626740 1.0000 80 chr4:56719895-56719975 1.0000 80 chr17:47785231-47785311 1.0000 80 chr6:101329085-101329165 1.0000 80 chr17:73401630-73401710 1.0000 80 chr1:3712807-3712887 1.0000 80 chr3:15900850-15900930 1.0000 80 chr7:106685319-106685399 1.0000 80 chr15:75230000-75230080 1.0000 80 chr1:229694235-229694315 1.0000 80 chr3:178789455-178789535 1.0000 80 chr15:59981367-59981447 1.0000 80 chr12:77158099-77158179 1.0000 80 chr6:32940338-32940418 1.0000 80 chr12:32832576-32832656 1.0000 80 chr3:15247815-15247895 1.0000 80 chr10:15139468-15139548 1.0000 80 chr18:33647360-33647440 1.0000 80 chr2:191878766-191878846 1.0000 80 chr20:2854240-2854320 1.0000 80 chr10:114207018-11420709 1.0000 80 chr4:139937094-139937174 1.0000 80 chr14:61447692-61447772 1.0000 80 chr21:36259217-36259297 1.0000 80 chr11:111636931-11163701 1.0000 80 chr4:177241306-177241386 1.0000 80 chr7:33148875-33148955 1.0000 80 chr7:140624362-140624442 1.0000 80 chr6:35227073-35227153 1.0000 80 chr3:42845681-42845761 1.0000 80 chr16:84220500-84220580 1.0000 80 chr7:105028655-105028735 1.0000 80 chr22:21213360-21213440 1.0000 80 chr2:64751619-64751699 1.0000 80 chr6:96025659-96025739 1.0000 80 chr1:109940308-109940388 1.0000 80 chr7:130353430-130353510 1.0000 80 chr11:69489980-69490060 1.0000 80 chr15:40886724-40886804 1.0000 80 chr9:100881369-100881449 1.0000 80 chr8:132916545-132916625 1.0000 80 chr5:14664865-14664945 1.0000 80 chr6:27661880-27661960 1.0000 80 chr1:32573721-32573801 1.0000 80 chr20:61436241-61436321 1.0000 80 chr4:144434916-144434996 1.0000 80 chr11:316195-316275 1.0000 80 chr8:96037299-96037379 1.0000 80 chr11:59328282-59328362 1.0000 80 chr2:61697652-61697732 1.0000 80 chr1:202858069-202858149 1.0000 80 chr12:42719949-42720029 1.0000 80 chr2:170684336-170684416 1.0000 80 chr14:75348715-75348795 1.0000 80 chr18:67872825-67872905 1.0000 80 chr14:57046575-57046655 1.0000 80 chr2:112641588-112641668 1.0000 80 chr15:23034219-23034299 1.0000 80 chr5:54603404-54603484 1.0000 80 chr1:109584469-109584549 1.0000 80 chr16:14014113-14014193 1.0000 80 chr6:143999291-143999371 1.0000 80 chr11:28131793-28131873 1.0000 80 chr12:117628112-11762819 1.0000 80 chr7:129074432-129074512 1.0000 80 chr8:145515329-145515409 1.0000 80 chr22:21272245-21272325 1.0000 80 chr11:93395047-93395127 1.0000 80 chr22:21271786-21271866 1.0000 80 chr11:47587221-47587301 1.0000 80 chr10:65225394-65225474 1.0000 80 chr12:69864214-69864294 1.0000 80 chr2:183902783-183902863 1.0000 80 chr4:170533565-170533645 1.0000 80 chr2:9695821-9695901 1.0000 80 chr19:1848302-1848382 1.0000 80 chr2:187454905-187454985 1.0000 80 chr3:45730980-45731060 1.0000 80 chr7:158649413-158649493 1.0000 80 chr7:102789541-102789621 1.0000 80 chr1:11159738-11159818 1.0000 80 chr6:4135398-4135478 1.0000 80 chr16:89160287-89160367 1.0000 80 chr5:93954389-93954469 1.0000 80 chr8:90996221-90996301 1.0000 80 chr20:37377203-37377283 1.0000 80 chr7:134896105-134896185 1.0000 80 chr7:148396536-148396616 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RBBP5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RBBP5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.145 C 0.358 G 0.35 T 0.147 Background letter frequencies (from file dataset with add-one prior applied): A 0.145 C 0.358 G 0.35 T 0.147 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAKSAAA MEME-1 width = 8 sites = 11 llr = 118 E-value = 8.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAKSAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aaa1:7a7 pos.-specific C ::::4::: probability G :::453:1 matrix T :::52::2 bits 2.8 *** * 2.5 *** * 2.2 *** * 2.0 *** * Relative 1.7 *** *** Entropy 1.4 *** *** (15.5 bits) 1.1 **** *** 0.8 **** *** 0.6 **** *** 0.3 ******** 0.0 -------- Multilevel AAATGAAA consensus GCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKSAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:131746591-131746671 26 6.79e-07 TCGTTGAGGA AAATGAAA GCGGTCGTGG chr11:66115395-66115475 58 1.17e-06 AGCAGAAAGG AAATCAAA ACGCTCCCTT chr3:15247815-15247895 62 2.78e-06 TCCACCGTCC AAAGTAAA CTTTGCCGCT chr8:90996221-90996301 8 3.47e-06 CCGCTGG AAATGAAT GGGAAAAAAT chr2:152118192-152118272 29 4.64e-06 CGCAAAACCC AAAGCAAA AGCAACTTGC chr7:137686537-137686617 51 4.64e-06 TTGCACTTGG AAAGCAAA CGTCTGCTCC chr5:134369233-134369313 35 7.44e-06 GAGAACGGGA AAAAGAAA GCTCCTGACG chr1:75198929-75199009 24 7.44e-06 GGAGTTCAGG AAATGGAA GGCGCAATGT chr6:99841940-99842020 19 1.36e-05 CCCGCCGAGG AAATTAAG GGACGCGCAG chr9:113018703-113018783 55 2.10e-05 GGACCGATGG AAATGGAT CCAAAGCACC chr18:9613919-9613999 73 2.38e-05 CGAAGGGCGG AAAGCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKSAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:131746591-131746671 6.8e-07 25_[+1]_47 chr11:66115395-66115475 1.2e-06 57_[+1]_15 chr3:15247815-15247895 2.8e-06 61_[+1]_11 chr8:90996221-90996301 3.5e-06 7_[+1]_65 chr2:152118192-152118272 4.6e-06 28_[+1]_44 chr7:137686537-137686617 4.6e-06 50_[+1]_22 chr5:134369233-134369313 7.4e-06 34_[+1]_38 chr1:75198929-75199009 7.4e-06 23_[+1]_49 chr6:99841940-99842020 1.4e-05 18_[+1]_54 chr9:113018703-113018783 2.1e-05 54_[+1]_18 chr18:9613919-9613999 2.4e-05 72_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKSAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAKSAAA width=8 seqs=11 chr5:131746591-131746671 ( 26) AAATGAAA 1 chr11:66115395-66115475 ( 58) AAATCAAA 1 chr3:15247815-15247895 ( 62) AAAGTAAA 1 chr8:90996221-90996301 ( 8) AAATGAAT 1 chr2:152118192-152118272 ( 29) AAAGCAAA 1 chr7:137686537-137686617 ( 51) AAAGCAAA 1 chr5:134369233-134369313 ( 35) AAAAGAAA 1 chr1:75198929-75199009 ( 24) AAATGGAA 1 chr6:99841940-99842020 ( 19) AAATTAAG 1 chr9:113018703-113018783 ( 55) AAATGGAT 1 chr18:9613919-9613999 ( 73) AAAGCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKSAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 8.8e-001 279 -1010 -1010 -1010 279 -1010 -1010 -1010 279 -1010 -1010 -1010 -67 -1010 5 189 -1010 2 38 31 233 -1010 -36 -1010 279 -1010 -1010 -1010 233 -1010 -194 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKSAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 8.8e-001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.363636 0.545455 0.000000 0.363636 0.454545 0.181818 0.727273 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.727273 0.000000 0.090909 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKSAAA MEME-1 regular expression -------------------------------------------------------------------------------- AAA[TG][GC][AG]AA -------------------------------------------------------------------------------- Time 5.13 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAGCW MEME-2 width = 8 sites = 8 llr = 86 E-value = 3.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAGCW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9aa98::4 pos.-specific C :::::19: probability G ::::39:: matrix T 1::1::16 bits 2.8 ** 2.5 ** 2.2 **** 2.0 **** * Relative 1.7 ***** * Entropy 1.4 ***** * (15.6 bits) 1.1 ***** ** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AAAAAGCT consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGCW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:75911042-75911122 25 1.18e-06 GCCGAAGCCC AAAAAGCT GAAGGTGGAG chr15:59981367-59981447 41 2.35e-06 GCCAGGTCGC AAAAAGCA GGGCCGAGCG chr11:59328282-59328362 73 3.31e-06 GCCCACCTCA AAAAAGTA chr22:21213360-21213440 53 5.70e-06 CAGCTTACCC TAAAAGCT ACAATCCGTT chr6:27598845-27598925 11 5.70e-06 CGAAGAAGCC AAATAGCT CGCGTCTTCT chr2:38829445-38829525 39 9.76e-06 GGCGCAGCGG AAAAGGCT AACTGAAGCA chr14:104028923-10402900 2 9.76e-06 G AAAAGGCT ACAAGCCGCG chr6:99841940-99842020 72 1.61e-05 CAGCACTCTT AAAAACCA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGCW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:75911042-75911122 1.2e-06 24_[+2]_48 chr15:59981367-59981447 2.3e-06 40_[+2]_32 chr11:59328282-59328362 3.3e-06 72_[+2] chr22:21213360-21213440 5.7e-06 52_[+2]_20 chr6:27598845-27598925 5.7e-06 10_[+2]_62 chr2:38829445-38829525 9.8e-06 38_[+2]_34 chr14:104028923-10402900 9.8e-06 1_[+2]_71 chr6:99841940-99842020 1.6e-05 71_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGCW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAGCW width=8 seqs=8 chr10:75911042-75911122 ( 25) AAAAAGCT 1 chr15:59981367-59981447 ( 41) AAAAAGCA 1 chr11:59328282-59328362 ( 73) AAAAAGTA 1 chr22:21213360-21213440 ( 53) TAAAAGCT 1 chr6:27598845-27598925 ( 11) AAATAGCT 1 chr2:38829445-38829525 ( 39) AAAAGGCT 1 chr14:104028923-10402900 ( 2) AAAAGGCT 1 chr6:99841940-99842020 ( 72) AAAAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGCW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 3.4e+002 259 -965 -965 -23 279 -965 -965 -965 279 -965 -965 -965 259 -965 -965 -23 237 -965 -49 -965 -965 -151 132 -965 -965 129 -965 -23 137 -965 -965 209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGCW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.4e+002 0.875000 0.000000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.750000 0.000000 0.250000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.875000 0.000000 0.125000 0.375000 0.000000 0.000000 0.625000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGCW MEME-2 regular expression -------------------------------------------------------------------------------- AAAA[AG]GC[TA] -------------------------------------------------------------------------------- Time 8.93 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAAGAGA MEME-3 width = 8 sites = 3 llr = 38 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAGAGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:aa:a:a pos.-specific C :::::::: probability G :a::a:a: matrix T :::::::: bits 2.8 * ** * * 2.5 * ** * * 2.2 * ** * * 2.0 * ** * * Relative 1.7 * ** * * Entropy 1.4 ******** (18.5 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGAAGAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:187454905-187454985 39 2.75e-06 GGGCTAGCCG AGAAGAGA GCGGCCGGCA chr1:202858069-202858149 43 2.75e-06 TGTCGGCGAG AGAAGAGA GCGGTCCCTG chr18:9613919-9613999 54 2.75e-06 GGGCGCCGGG AGAAGAGA GCGAAGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:187454905-187454985 2.7e-06 38_[+3]_34 chr1:202858069-202858149 2.7e-06 42_[+3]_30 chr18:9613919-9613999 2.7e-06 53_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAGAGA width=8 seqs=3 chr2:187454905-187454985 ( 39) AGAAGAGA 1 chr1:202858069-202858149 ( 43) AGAAGAGA 1 chr18:9613919-9613999 ( 54) AGAAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3477 E= 2.0e+003 278 -823 -823 -823 -823 -823 151 -823 278 -823 -823 -823 278 -823 -823 -823 -823 -823 151 -823 278 -823 -823 -823 -823 -823 151 -823 278 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.0e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAGA MEME-3 regular expression -------------------------------------------------------------------------------- AGAAGAGA -------------------------------------------------------------------------------- Time 12.74 secs. ******************************************************************************** ******************************************************************************** MOTIF WGGAAAAG MEME-4 width = 8 sites = 13 llr = 127 E-value = 5.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGGAAAAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5::8889: pos.-specific C :::::::: probability G :aa:22:8 matrix T 5::2::12 bits 2.8 2.5 * 2.2 * * 2.0 * ** Relative 1.7 * **** Entropy 1.4 ******* (14.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGGAAAAG consensus T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAAAAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:90996221-90996301 55 5.53e-06 GATGACATTG TGGAAAAG GAGTCTGAAA chr11:316195-316275 1 5.53e-06 . TGGAAAAG GGCAAGACCA chr9:102669217-102669297 30 5.53e-06 GGTCGCGGGG TGGAAAAG TTTCCGGCGC chr10:124740030-12474011 52 6.69e-06 TCCCCGCGGC AGGAAAAT CGACTTTCGC chr16:84220500-84220580 33 7.86e-06 CGTGGTCGTC TGGAAAAT GGGCCTCGGC chr8:26149296-26149376 45 1.06e-05 GCAACATGGC AGGTAAAG GAGAAATCCC chr11:66115395-66115475 26 1.35e-05 GGCTGCAGCG TGGTAAAG GATGGCGCGG chr11:124670138-12467021 55 2.13e-05 TCAGGCCACC AGGAGAAG CCGGGGAAAG chr6:27598845-27598925 61 2.13e-05 AACGTTGGCA AGGAGAAG CCGGAGTCTC chr19:12273975-12274055 39 3.48e-05 CCCGGGAGTC AGGAAATG GTGAGTGTGT chr16:89160287-89160367 65 4.42e-05 gcggAGGACG AGGAAGAG TTGTGGCG chr6:90348302-90348382 31 4.42e-05 TAGGGACAGA TGGAGAAT CCAGCTCAGA chr4:39699815-39699895 57 4.42e-05 gaggcggtgg aggaagag gtggcggcgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAAAAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:90996221-90996301 5.5e-06 54_[+4]_18 chr11:316195-316275 5.5e-06 [+4]_72 chr9:102669217-102669297 5.5e-06 29_[+4]_43 chr10:124740030-12474011 6.7e-06 51_[+4]_21 chr16:84220500-84220580 7.9e-06 32_[+4]_40 chr8:26149296-26149376 1.1e-05 44_[+4]_28 chr11:66115395-66115475 1.3e-05 25_[+4]_47 chr11:124670138-12467021 2.1e-05 54_[+4]_18 chr6:27598845-27598925 2.1e-05 60_[+4]_12 chr19:12273975-12274055 3.5e-05 38_[+4]_34 chr16:89160287-89160367 4.4e-05 64_[+4]_8 chr6:90348302-90348382 4.4e-05 30_[+4]_42 chr4:39699815-39699895 4.4e-05 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAAAAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGGAAAAG width=8 seqs=13 chr8:90996221-90996301 ( 55) TGGAAAAG 1 chr11:316195-316275 ( 1) TGGAAAAG 1 chr9:102669217-102669297 ( 30) TGGAAAAG 1 chr10:124740030-12474011 ( 52) AGGAAAAT 1 chr16:84220500-84220580 ( 33) TGGAAAAT 1 chr8:26149296-26149376 ( 45) AGGTAAAG 1 chr11:66115395-66115475 ( 26) TGGTAAAG 1 chr11:124670138-12467021 ( 55) AGGAGAAG 1 chr6:27598845-27598925 ( 61) AGGAGAAG 1 chr19:12273975-12274055 ( 39) AGGAAATG 1 chr16:89160287-89160367 ( 65) AGGAAGAG 1 chr6:90348302-90348382 ( 31) TGGAGAAT 1 chr4:39699815-39699895 ( 57) AGGAAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAAAAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 5.7e+002 189 -1035 -1035 165 -1035 -1035 151 -1035 -1035 -1035 151 -1035 255 -1035 -1035 7 241 -1035 -60 -1035 255 -1035 -119 -1035 267 -1035 -1035 -93 -1035 -1035 113 65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAAAAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.7e+002 0.538462 0.000000 0.000000 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.000000 0.153846 0.769231 0.000000 0.230769 0.000000 0.846154 0.000000 0.153846 0.000000 0.923077 0.000000 0.000000 0.076923 0.000000 0.000000 0.769231 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGAAAAG MEME-4 regular expression -------------------------------------------------------------------------------- [AT]GGA[AG]AA[GT] -------------------------------------------------------------------------------- Time 16.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTKTRA MEME-5 width = 8 sites = 8 llr = 85 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTKTRA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:::::59 pos.-specific C :13::::: probability G ::::515: matrix T 998a59:1 bits 2.8 * 2.5 * 2.2 * * * 2.0 ** * * * Relative 1.7 **** * * Entropy 1.4 **** * * (15.3 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTTTGTAA consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTRA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:130353430-130353510 67 2.12e-07 TCTTGTCGAA TTTTTTAA TCATCT chr6:27661880-27661960 73 1.23e-06 GATCGCCAGG TTTTTTGA chr9:138848223-138848303 61 2.45e-06 CGGCTCACCA TTTTGTGA AGAATGGCAA chr6:99841940-99842020 38 8.92e-06 GACGCGCAGC TTTTGTAT TACAGCCTCC chr7:148660065-148660145 53 8.92e-06 TCATTTACTT TTCTTTGA TTCATGAATG chr6:32940338-32940418 55 1.50e-05 TCGGGGACCG TCTTTTGA AGAGTCAGTC chr4:56719895-56719975 22 1.50e-05 CCGGTCTCCG TTTTGGAA GACCCGCCTC chr3:142166702-142166782 60 3.43e-05 TCTGAGATCC ATCTGTAA AACTTGGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTRA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:130353430-130353510 2.1e-07 66_[+5]_6 chr6:27661880-27661960 1.2e-06 72_[+5] chr9:138848223-138848303 2.4e-06 60_[+5]_12 chr6:99841940-99842020 8.9e-06 37_[+5]_35 chr7:148660065-148660145 8.9e-06 52_[+5]_20 chr6:32940338-32940418 1.5e-05 54_[+5]_18 chr4:56719895-56719975 1.5e-05 21_[+5]_51 chr3:142166702-142166782 3.4e-05 59_[+5]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTRA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTKTRA width=8 seqs=8 chr7:130353430-130353510 ( 67) TTTTTTAA 1 chr6:27661880-27661960 ( 73) TTTTTTGA 1 chr9:138848223-138848303 ( 61) TTTTGTGA 1 chr6:99841940-99842020 ( 38) TTTTGTAT 1 chr7:148660065-148660145 ( 53) TTCTTTGA 1 chr6:32940338-32940418 ( 55) TCTTTTGA 1 chr4:56719895-56719975 ( 22) TTTTGGAA 1 chr3:142166702-142166782 ( 60) ATCTGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTRA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 2.7e+003 -21 -965 -965 257 -965 -151 -965 257 -965 -52 -965 235 -965 -965 -965 276 -965 -965 51 176 -965 -965 -148 257 179 -965 51 -965 259 -965 -965 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTRA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.7e+003 0.125000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.875000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.125000 0.875000 0.500000 0.000000 0.500000 0.000000 0.875000 0.000000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTRA MEME-5 regular expression -------------------------------------------------------------------------------- TT[TC]T[GT]T[AG]A -------------------------------------------------------------------------------- Time 20.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:28831916-28831996 1.20e-02 80 chr14:21077946-21078026 2.80e-02 29_[+3(9.91e-05)]_9_[+3(9.91e-05)]_\ 26 chr2:157256883-157256963 1.00e-01 80 chr8:26149296-26149376 8.74e-05 44_[+4(1.06e-05)]_28 chr11:118272419-11827249 5.80e-01 80 chr16:14379526-14379606 3.82e-01 80 chrX:18693267-18693347 8.96e-01 80 chr1:94312312-94312392 2.03e-02 80 chr1:51443895-51443975 8.50e-01 80 chr9:35749095-35749175 1.00e+00 80 chr3:108308391-108308471 1.06e-01 80 chr17:46620877-46620957 3.87e-02 80 chr11:46867482-46867562 9.83e-01 80 chr7:138916488-138916568 1.00e+00 80 chr9:100174484-100174564 8.20e-01 80 chr9:135545678-135545758 1.03e-03 14_[+2(6.61e-05)]_58 chr16:48278567-48278647 9.85e-01 80 chr2:28113676-28113756 6.64e-01 80 chr10:5734744-5734824 9.83e-01 80 chr6:91296657-91296737 9.95e-01 80 chr4:147096990-147097070 9.96e-01 80 chr12:96429216-96429296 6.00e-02 80 chr6:27598845-27598925 5.60e-06 10_[+2(5.70e-06)]_42_[+4(2.13e-05)]_\ 12 chr2:98612227-98612307 8.56e-01 80 chr3:194991724-194991804 8.02e-01 80 chr2:30670195-30670275 7.86e-01 80 chr15:76630636-76630716 1.24e-01 80 chr16:84733702-84733782 9.96e-01 80 chr3:25705885-25705965 8.97e-01 80 chr17:71228283-71228363 2.58e-02 1_[+3(9.91e-05)]_71 chr2:48667637-48667717 5.57e-01 80 chr1:180601434-180601514 9.97e-01 80 chr18:32957157-32957237 8.40e-01 80 chr14:24605426-24605506 9.91e-01 80 chr4:6718184-6718264 2.46e-01 80 chr20:37591067-37591147 9.03e-01 80 chr8:56685592-56685672 5.18e-01 80 chr21:34143821-34143901 1.00e+00 80 chr3:39148964-39149044 3.09e-01 80 chr2:8977594-8977674 7.27e-01 80 chr9:102669217-102669297 5.51e-04 29_[+4(5.53e-06)]_43 chr13:48575263-48575343 2.46e-01 80 chr5:76787942-76788022 1.63e-01 80 chr10:6019474-6019554 7.92e-01 80 chr7:148660065-148660145 1.50e-02 52_[+5(8.92e-06)]_20 chr1:21503222-21503302 3.45e-02 29_[+5(6.75e-05)]_43 chr11:66115395-66115475 4.46e-07 25_[+4(1.35e-05)]_24_[+1(1.17e-06)]_\ 15 chr1:153631252-153631332 3.84e-01 80 chr15:58357553-58357633 3.99e-01 80 chr12:108954750-10895483 5.92e-02 32_[+5(6.40e-05)]_40 chr18:657852-657932 8.76e-01 80 chr1:154580552-154580632 1.57e-01 80 chr11:31531386-31531466 6.06e-02 80 chr2:173941106-173941186 1.56e-01 80 chr8:124169845-124169925 9.15e-02 80 chr1:235490452-235490532 3.49e-01 80 chr2:128051600-128051680 2.08e-02 69_[+3(9.91e-05)]_3 chr22:19109389-19109469 1.72e-01 80 chr6:126111919-126111999 2.52e-01 80 chr13:41885891-41885971 9.98e-01 80 chr20:3451777-3451857 1.84e-01 80 chr1:16174727-16174807 8.08e-01 80 chr8:116660603-116660683 6.09e-01 80 chr2:231921648-231921728 5.11e-01 80 chr18:9613919-9613999 1.59e-05 53_[+3(2.75e-06)]_11_[+1(2.38e-05)] chr22:21996681-21996761 7.96e-01 80 chr3:43328125-43328205 9.27e-01 80 chr12:69633731-69633811 9.98e-01 80 chr9:37801137-37801217 9.73e-01 80 chr1:61549212-61549292 6.24e-01 80 chr6:149638135-149638215 1.00e+00 80 chr14:104028923-10402900 3.24e-02 1_[+2(9.76e-06)]_71 chr1:100315697-100315777 4.08e-01 80 chr1:114472664-114472744 7.23e-01 80 chr10:115439694-11543977 6.27e-01 80 chr10:124740030-12474011 2.56e-04 51_[+4(6.69e-06)]_21 chr12:112546311-11254639 6.69e-01 80 chr3:48956331-48956411 1.00e+00 80 chr11:124670138-12467021 8.00e-03 54_[+4(2.13e-05)]_18 chr18:29673108-29673188 1.00e+00 80 chr7:137686537-137686617 5.40e-04 50_[+1(4.64e-06)]_22 chr8:106331780-106331860 3.53e-01 80 chr11:111742129-11174220 9.98e-01 80 chr1:235667138-235667218 3.97e-01 80 chr1:85666357-85666437 1.36e-01 80 chr5:44809412-44809492 9.27e-01 80 chr6:146284959-146285039 4.77e-01 80 chr16:67927345-67927425 9.85e-01 80 chr6:7313013-7313093 3.66e-01 80 chr9:138848223-138848303 2.68e-04 23_[+5(6.40e-05)]_29_[+5(2.45e-06)]_\ 12 chr2:39102901-39102981 9.27e-03 80 chr1:7831453-7831533 1.00e+00 80 chr1:212459366-212459446 7.95e-01 80 chr10:93169862-93169942 9.95e-01 80 chr1:198126255-198126335 9.06e-01 80 chr21:40760487-40760567 1.61e-01 80 chr6:99841940-99842020 3.56e-08 18_[+1(1.36e-05)]_11_[+5(8.92e-06)]_\ 26_[+2(1.61e-05)]_1 chr15:68570474-68570554 9.92e-01 80 chr2:152118192-152118272 4.25e-05 28_[+1(4.64e-06)]_44 chr1:47082238-47082318 9.97e-01 80 chr9:127951882-127951962 3.75e-01 80 chr7:148892922-148893002 9.83e-01 80 chr1:224517718-224517798 5.08e-03 80 chr22:21271999-21272079 4.50e-01 80 chr1:235490833-235490913 7.85e-01 80 chr2:38829445-38829525 8.21e-04 38_[+2(9.76e-06)]_34 chr8:124054422-124054502 1.86e-01 80 chr1:16174953-16175033 8.50e-01 80 chr9:131085138-131085218 9.38e-01 80 chr4:39699815-39699895 1.34e-02 56_[+4(4.42e-05)]_16 chr1:42800722-42800802 9.71e-01 80 chr8:57905913-57905993 9.51e-01 80 chr3:142166702-142166782 4.92e-04 59_[+5(3.43e-05)]_13 chr5:131746591-131746671 3.16e-06 25_[+1(6.79e-07)]_47 chr7:5553286-5553366 9.99e-01 80 chr5:44809210-44809290 1.54e-01 80 chr3:138663957-138664037 7.47e-01 80 chr17:65241130-65241210 9.81e-01 80 chr10:22292331-22292411 4.13e-01 80 chr6:27486994-27487074 3.65e-01 80 chr1:114354418-114354498 1.16e-01 80 chr1:21113042-21113122 7.01e-01 80 chr6:30640614-30640694 9.75e-01 80 chr22:22020626-22020706 9.94e-01 80 chr5:179160148-179160228 9.06e-01 80 chr6:47445282-47445362 6.04e-01 80 chr1:90286713-90286793 9.50e-01 80 chr12:72148697-72148777 7.37e-01 80 chr16:89723990-89724070 1.18e-02 39_[+3(9.91e-05)]_33 chr11:89956188-89956268 1.58e-01 80 chr11:44117284-44117364 9.08e-01 80 chr9:113018703-113018783 4.78e-05 54_[+1(2.10e-05)]_18 chr11:18610134-18610214 9.16e-01 80 chr6:90348302-90348382 1.41e-03 30_[+4(4.42e-05)]_42 chr6:161412881-161412961 9.99e-01 80 chr19:13002056-13002136 3.55e-01 80 chr1:100504058-100504138 9.95e-01 80 chr5:130599479-130599559 7.14e-01 80 chr7:92157673-92157753 1.38e-01 9_[+4(7.53e-05)]_63 chr4:142142131-142142211 6.30e-01 80 chr2:32503034-32503114 3.92e-01 80 chr3:32726869-32726949 6.05e-01 80 chr6:3259274-3259354 8.30e-01 80 chr1:202857800-202857880 9.17e-01 80 chr10:74385536-74385616 4.38e-04 80 chr1:224544855-224544935 1.89e-01 80 chr1:173991341-173991421 1.00e+00 80 chr1:207818713-207818793 4.63e-01 80 chr21:35446429-35446509 7.16e-01 80 chr2:159314028-159314108 5.55e-01 80 chr3:148847495-148847575 1.76e-01 80 chr7:140178678-140178758 6.31e-01 80 chr10:75911042-75911122 3.69e-04 24_[+2(1.18e-06)]_48 chr22:44351370-44351450 9.01e-01 80 chr17:80376380-80376460 4.95e-01 80 chr1:75198929-75199009 8.99e-06 23_[+1(7.44e-06)]_49 chr6:32940539-32940619 2.61e-01 80 chr1:90460774-90460854 8.98e-01 80 chr19:12273975-12274055 4.81e-03 38_[+4(3.48e-05)]_34 chr13:31248261-31248341 8.09e-01 80 chr4:26322707-26322787 9.99e-01 80 chr5:134369233-134369313 8.87e-06 34_[+1(7.44e-06)]_38 chr19:3626660-3626740 9.97e-01 80 chr4:56719895-56719975 9.75e-03 21_[+5(1.50e-05)]_51 chr17:47785231-47785311 9.00e-01 80 chr6:101329085-101329165 4.80e-01 80 chr17:73401630-73401710 7.01e-01 80 chr1:3712807-3712887 5.89e-01 80 chr3:15900850-15900930 8.36e-01 80 chr7:106685319-106685399 6.62e-01 80 chr15:75230000-75230080 1.81e-01 80 chr1:229694235-229694315 9.37e-01 80 chr3:178789455-178789535 6.82e-01 80 chr15:59981367-59981447 8.55e-03 40_[+2(2.35e-06)]_32 chr12:77158099-77158179 2.90e-01 80 chr6:32940338-32940418 1.43e-03 54_[+5(1.50e-05)]_18 chr12:32832576-32832656 5.04e-01 80 chr3:15247815-15247895 9.27e-03 61_[+1(2.78e-06)]_11 chr10:15139468-15139548 7.98e-01 80 chr18:33647360-33647440 3.51e-01 80 chr2:191878766-191878846 9.25e-01 80 chr20:2854240-2854320 9.01e-01 80 chr10:114207018-11420709 9.98e-01 80 chr4:139937094-139937174 8.52e-01 80 chr14:61447692-61447772 7.15e-01 80 chr21:36259217-36259297 1.00e+00 80 chr11:111636931-11163701 2.94e-01 80 chr4:177241306-177241386 1.17e-01 80 chr7:33148875-33148955 1.00e+00 80 chr7:140624362-140624442 1.74e-01 80 chr6:35227073-35227153 2.28e-02 12_[+3(9.91e-05)]_60 chr3:42845681-42845761 9.98e-01 80 chr16:84220500-84220580 4.48e-03 32_[+4(7.86e-06)]_40 chr7:105028655-105028735 9.95e-01 80 chr22:21213360-21213440 1.65e-03 52_[+2(5.70e-06)]_20 chr2:64751619-64751699 3.86e-01 80 chr6:96025659-96025739 6.83e-01 80 chr1:109940308-109940388 9.98e-01 80 chr7:130353430-130353510 6.41e-03 66_[+5(2.12e-07)]_6 chr11:69489980-69490060 8.71e-01 80 chr15:40886724-40886804 1.00e+00 80 chr9:100881369-100881449 7.69e-01 80 chr8:132916545-132916625 8.85e-01 80 chr5:14664865-14664945 9.95e-01 80 chr6:27661880-27661960 3.75e-05 1_[+5(6.40e-05)]_63_[+5(1.23e-06)] chr1:32573721-32573801 1.91e-01 80 chr20:61436241-61436321 3.83e-01 80 chr4:144434916-144434996 9.10e-01 80 chr11:316195-316275 4.90e-04 [+4(5.53e-06)]_72 chr8:96037299-96037379 8.82e-01 80 chr11:59328282-59328362 2.46e-04 72_[+2(3.31e-06)] chr2:61697652-61697732 8.69e-01 80 chr1:202858069-202858149 4.27e-03 42_[+3(2.75e-06)]_30 chr12:42719949-42720029 2.07e-01 80 chr2:170684336-170684416 9.01e-01 80 chr14:75348715-75348795 3.24e-01 80 chr18:67872825-67872905 5.44e-01 80 chr14:57046575-57046655 8.70e-01 80 chr2:112641588-112641668 7.82e-01 80 chr15:23034219-23034299 3.99e-01 80 chr5:54603404-54603484 3.51e-01 80 chr1:109584469-109584549 2.09e-01 80 chr16:14014113-14014193 8.51e-01 80 chr6:143999291-143999371 9.60e-01 80 chr11:28131793-28131873 4.86e-01 80 chr12:117628112-11762819 8.50e-01 80 chr7:129074432-129074512 1.63e-01 80 chr8:145515329-145515409 9.57e-01 80 chr22:21272245-21272325 7.78e-01 80 chr11:93395047-93395127 9.06e-01 80 chr22:21271786-21271866 9.39e-02 80 chr11:47587221-47587301 9.88e-01 80 chr10:65225394-65225474 6.74e-01 80 chr12:69864214-69864294 8.25e-01 80 chr2:183902783-183902863 3.28e-01 80 chr4:170533565-170533645 6.73e-01 80 chr2:9695821-9695901 2.26e-01 80 chr19:1848302-1848382 9.17e-02 80 chr2:187454905-187454985 1.32e-02 38_[+3(2.75e-06)]_34 chr3:45730980-45731060 7.27e-01 80 chr7:158649413-158649493 1.68e-01 80 chr7:102789541-102789621 2.98e-03 37_[+3(9.91e-05)]_35 chr1:11159738-11159818 1.37e-01 80 chr6:4135398-4135478 3.72e-01 80 chr16:89160287-89160367 1.76e-02 64_[+4(4.42e-05)]_8 chr5:93954389-93954469 2.00e-01 80 chr8:90996221-90996301 1.38e-06 7_[+1(3.47e-06)]_39_[+4(5.53e-06)]_\ 18 chr20:37377203-37377283 9.39e-01 80 chr7:134896105-134896185 9.91e-01 80 chr7:148396536-148396616 1.00e+00 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n10.farnam.hpc.yale.internal ********************************************************************************