******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/RAD21.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:114418473-11441855 1.0000 80 chr3:9012809-9012889 1.0000 80 chr1:165562322-165562402 1.0000 80 chr16:19387066-19387146 1.0000 80 chr7:137277170-137277250 1.0000 80 chr6:166519716-166519796 1.0000 80 chr19:40645861-40645941 1.0000 80 chr21:33973464-33973544 1.0000 80 chr16:84518375-84518455 1.0000 80 chr10:45730797-45730877 1.0000 80 chr4:48548504-48548584 1.0000 80 chr7:64079610-64079690 1.0000 80 chr10:13414049-13414129 1.0000 80 chr4:41283205-41283285 1.0000 80 chr11:61875611-61875691 1.0000 80 chr6:29557358-29557438 1.0000 80 chr4:89436946-89437026 1.0000 80 chr19:6048960-6049040 1.0000 80 chr20:49604399-49604479 1.0000 80 chr5:103514953-103515033 1.0000 80 chr17:53603895-53603975 1.0000 80 chr17:56190531-56190611 1.0000 80 chr3:40622159-40622239 1.0000 80 chr12:51745849-51745929 1.0000 80 chr7:72866265-72866345 1.0000 80 chr8:41400358-41400438 1.0000 80 chr3:182401508-182401588 1.0000 80 chr8:103826982-103827062 1.0000 80 chr5:173046092-173046172 1.0000 80 chr21:40510208-40510288 1.0000 80 chr6:7615839-7615919 1.0000 80 chr5:81461886-81461966 1.0000 80 chr16:75233367-75233447 1.0000 80 chr2:64558142-64558222 1.0000 80 chr3:4753213-4753293 1.0000 80 chr1:20244638-20244718 1.0000 80 chr6:143896633-143896713 1.0000 80 chr1:227669385-227669465 1.0000 80 chr21:30117520-30117600 1.0000 80 chr9:129703039-129703119 1.0000 80 chr3:155041022-155041102 1.0000 80 chr1:60225272-60225352 1.0000 80 chrX:122967351-122967431 1.0000 80 chr11:65278374-65278454 1.0000 80 chr11:116976834-11697691 1.0000 80 chr3:170132071-170132151 1.0000 80 chr3:24040582-24040662 1.0000 80 chr1:223872049-223872129 1.0000 80 chr1:212541478-212541558 1.0000 80 chr1:39301046-39301126 1.0000 80 chr11:57017344-57017424 1.0000 80 chr11:4647583-4647663 1.0000 80 chr2:43086250-43086330 1.0000 80 chr5:10452964-10453044 1.0000 80 chr12:51815210-51815290 1.0000 80 chr20:32717611-32717691 1.0000 80 chr15:35370845-35370925 1.0000 80 chr2:208610922-208611002 1.0000 80 chr12:55466996-55467076 1.0000 80 chr5:34474766-34474846 1.0000 80 chr17:34074631-34074711 1.0000 80 chr20:5509681-5509761 1.0000 80 chr20:36162971-36163051 1.0000 80 chr7:134959389-134959469 1.0000 80 chr11:108519159-10851923 1.0000 80 chr10:49866455-49866535 1.0000 80 chr6:2738773-2738853 1.0000 80 chr12:70273311-70273391 1.0000 80 chr16:5006287-5006367 1.0000 80 chr7:28060101-28060181 1.0000 80 chr10:69615511-69615591 1.0000 80 chr8:86209772-86209852 1.0000 80 chr1:27204604-27204684 1.0000 80 chr7:111381949-111382029 1.0000 80 chr17:17259505-17259585 1.0000 80 chr6:131206641-131206721 1.0000 80 chr2:46877814-46877894 1.0000 80 chr3:32551786-32551866 1.0000 80 chr9:123518254-123518334 1.0000 80 chr7:131374022-131374102 1.0000 80 chr3:20381966-20382046 1.0000 80 chr6:138437170-138437250 1.0000 80 chr17:26207183-26207263 1.0000 80 chr7:90057232-90057312 1.0000 80 chr7:45194351-45194431 1.0000 80 chr1:43243687-43243767 1.0000 80 chr15:42996752-42996832 1.0000 80 chr22:18558947-18559027 1.0000 80 chr2:26174027-26174107 1.0000 80 chr5:75552234-75552314 1.0000 80 chr16:75798198-75798278 1.0000 80 chr3:36742595-36742675 1.0000 80 chr1:111003019-111003099 1.0000 80 chr11:4094075-4094155 1.0000 80 chr2:152095513-152095593 1.0000 80 chr8:135697970-135698050 1.0000 80 chr4:190825710-190825790 1.0000 80 chr17:41654156-41654236 1.0000 80 chr11:12303526-12303606 1.0000 80 chr8:145181496-145181576 1.0000 80 chr5:87077102-87077182 1.0000 80 chr17:56525002-56525082 1.0000 80 chr6:170839058-170839138 1.0000 80 chr9:19457566-19457646 1.0000 80 chr17:55208460-55208540 1.0000 80 chr5:154022165-154022245 1.0000 80 chr10:75289258-75289338 1.0000 80 chr1:165883571-165883651 1.0000 80 chr7:32519354-32519434 1.0000 80 chr7:26404880-26404960 1.0000 80 chr5:112331866-112331946 1.0000 80 chr3:129995185-129995265 1.0000 80 chr17:43296421-43296501 1.0000 80 chr4:128322042-128322122 1.0000 80 chr15:74927656-74927736 1.0000 80 chr7:139702221-139702301 1.0000 80 chr5:136965393-136965473 1.0000 80 chr19:40811391-40811471 1.0000 80 chr19:33061262-33061342 1.0000 80 chr10:6443913-6443993 1.0000 80 chr10:45504221-45504301 1.0000 80 chr17:32078284-32078364 1.0000 80 chr6:35107814-35107894 1.0000 80 chr3:48031585-48031665 1.0000 80 chr4:103930424-103930504 1.0000 80 chr4:139951947-139952027 1.0000 80 chr13:51644327-51644407 1.0000 80 chr15:67239193-67239273 1.0000 80 chr2:69152575-69152655 1.0000 80 chr21:40890387-40890467 1.0000 80 chr10:17299849-17299929 1.0000 80 chr8:10444963-10445043 1.0000 80 chr1:36240409-36240489 1.0000 80 chr9:101026183-101026263 1.0000 80 chr22:29225509-29225589 1.0000 80 chr12:49012378-49012458 1.0000 80 chr1:180485118-180485198 1.0000 80 chr6:5144035-5144115 1.0000 80 chr11:60655160-60655240 1.0000 80 chr19:49291550-49291630 1.0000 80 chr2:109200523-109200603 1.0000 80 chr18:12934620-12934700 1.0000 80 chr6:136547516-136547596 1.0000 80 chr7:138423604-138423684 1.0000 80 chr6:25071154-25071234 1.0000 80 chr12:7372399-7372479 1.0000 80 chr10:28952930-28953010 1.0000 80 chr7:22150048-22150128 1.0000 80 chr3:5347221-5347301 1.0000 80 chr3:141179111-141179191 1.0000 80 chr5:163931300-163931380 1.0000 80 chr11:113601771-11360185 1.0000 80 chr17:37363371-37363451 1.0000 80 chr6:17156492-17156572 1.0000 80 chr14:23246818-23246898 1.0000 80 chr10:65479888-65479968 1.0000 80 chr1:43693078-43693158 1.0000 80 chr5:34898512-34898592 1.0000 80 chr21:37400888-37400968 1.0000 80 chr10:33297780-33297860 1.0000 80 chr13:96056678-96056758 1.0000 80 chr6:3279939-3280019 1.0000 80 chr5:149016522-149016602 1.0000 80 chr6:39277851-39277931 1.0000 80 chr8:61309556-61309636 1.0000 80 chr1:231493717-231493797 1.0000 80 chr5:55566505-55566585 1.0000 80 chr20:55125810-55125890 1.0000 80 chr8:86985738-86985818 1.0000 80 chr11:11809446-11809526 1.0000 80 chr3:184089477-184089557 1.0000 80 chr5:135223200-135223280 1.0000 80 chr8:82692870-82692950 1.0000 80 chr19:56845038-56845118 1.0000 80 chr5:1167917-1167997 1.0000 80 chr1:11702622-11702702 1.0000 80 chr2:105986399-105986479 1.0000 80 chr4:13550694-13550774 1.0000 80 chr6:11655952-11656032 1.0000 80 chr2:100877327-100877407 1.0000 80 chr4:38181428-38181508 1.0000 80 chr15:81567534-81567614 1.0000 80 chr18:33864800-33864880 1.0000 80 chr7:99510896-99510976 1.0000 80 chr15:58520079-58520159 1.0000 80 chr5:40688387-40688467 1.0000 80 chr15:51942268-51942348 1.0000 80 chr1:10488255-10488335 1.0000 80 chr5:81521524-81521604 1.0000 80 chr1:45766068-45766148 1.0000 80 chr8:37637498-37637578 1.0000 80 chr16:55499142-55499222 1.0000 80 chr7:75649582-75649662 1.0000 80 chr10:30681578-30681658 1.0000 80 chr19:51286976-51287056 1.0000 80 chr1:85219370-85219450 1.0000 80 chr5:76164072-76164152 1.0000 80 chr18:32586107-32586187 1.0000 80 chr7:111375881-111375961 1.0000 80 chr5:81608306-81608386 1.0000 80 chr4:4490265-4490345 1.0000 80 chr18:6886394-6886474 1.0000 80 chr9:96975923-96976003 1.0000 80 chr1:11097800-11097880 1.0000 80 chr17:61502897-61502977 1.0000 80 chr1:55257728-55257808 1.0000 80 chr9:125572749-125572829 1.0000 80 chr7:111370734-111370814 1.0000 80 chr1:236267081-236267161 1.0000 80 chr10:17649661-17649741 1.0000 80 chr2:85779327-85779407 1.0000 80 chr1:201941896-201941976 1.0000 80 chr3:15244340-15244420 1.0000 80 chr1:31181085-31181165 1.0000 80 chr6:3732906-3732986 1.0000 80 chr19:6022424-6022504 1.0000 80 chr1:181135859-181135939 1.0000 80 chr5:14648822-14648902 1.0000 80 chr11:73372119-73372199 1.0000 80 chr1:179675635-179675715 1.0000 80 chr6:44047031-44047111 1.0000 80 chr9:126164352-126164432 1.0000 80 chr1:168409139-168409219 1.0000 80 chr1:14287015-14287095 1.0000 80 chr21:47240623-47240703 1.0000 80 chr17:70723992-70724072 1.0000 80 chr1:228800283-228800363 1.0000 80 chr14:96027392-96027472 1.0000 80 chr1:158094903-158094983 1.0000 80 chr19:35203734-35203814 1.0000 80 chr1:184774852-184774932 1.0000 80 chr9:95553199-95553279 1.0000 80 chr5:41856911-41856991 1.0000 80 chr6:14067179-14067259 1.0000 80 chr7:45175879-45175959 1.0000 80 chr6:134418414-134418494 1.0000 80 chr7:2904798-2904878 1.0000 80 chr16:77709783-77709863 1.0000 80 chr16:66929241-66929321 1.0000 80 chr4:160124274-160124354 1.0000 80 chr5:125874982-125875062 1.0000 80 chr19:50487024-50487104 1.0000 80 chr21:39728082-39728162 1.0000 80 chr6:134237836-134237916 1.0000 80 chr13:27559598-27559678 1.0000 80 chr9:100231038-100231118 1.0000 80 chr2:216796124-216796204 1.0000 80 chr3:150945653-150945733 1.0000 80 chr4:68193127-68193207 1.0000 80 chr19:39612832-39612912 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_RAD21/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/RAD21.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.247 C 0.255 G 0.253 T 0.246 Background letter frequencies (from file dataset with add-one prior applied): A 0.247 C 0.255 G 0.252 T 0.246 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AYCWRGTG MEME-1 width = 8 sites = 204 llr = 1231 E-value = 4.9e-078 ******************************************************************************** -------------------------------------------------------------------------------- Motif AYCWRGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7::3311: pos.-specific C 358::3:: probability G :1::56:a matrix T :4272:9: bits 2.0 * 1.8 * 1.6 ** 1.4 ** Relative 1.2 * ** Entropy 1.0 * ** ** (8.7 bits) 0.8 * ** ** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACCTGGTG consensus CTTAAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCWRGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:55257728-55257808 35 1.56e-05 CAATACCACC ACCTGGTG GCACTATGCC chr15:51942268-51942348 37 1.56e-05 CCTACCATCC ACCTGGTG GCAGTATTTC chr6:39277851-39277931 45 1.56e-05 CCAGCCTGCC ACCTGGTG GCAAGTCCTG chr7:138423604-138423684 51 1.56e-05 CAAGGCCGCC ACCTGGTG GCAGCATGCA chr11:12303526-12303606 49 1.56e-05 CTGCATCGCC ACCTGGTG GTCATGAGCA chr9:96975923-96976003 44 3.06e-05 CCATGCTGCC ATCTGGTG GTTACTTTGT chr7:111375881-111375961 44 3.06e-05 AGACACTGCC ATCTGGTG GGCATGTTGA chr11:4094075-4094155 37 3.06e-05 ATATATCGCC ATCTGGTG TTCATTTTCA chr12:51745849-51745929 39 3.06e-05 TAGCACCCTC ATCTGGTG ACATCCTGCT chr19:35203734-35203814 43 4.58e-05 caacagcgcc acctagtg gaaatataaa chr5:14648822-14648902 47 4.58e-05 TTGTGGTGCC ACCTAGTG TCCATGATTG chr1:11702622-11702702 41 4.58e-05 CAATGCTGAC ACCTAGTG GTACTTGGAG chr8:61309556-61309636 41 4.58e-05 CAAGTTCTCC ACCTAGTG GATATTTTGA chr10:33297780-33297860 52 4.58e-05 CTTGTCTGTC ACCTAGTG GACAAAAATG chr12:49012378-49012458 41 4.58e-05 CTGGAGTTCC ACCTAGTG TTTGTCTGTG chr4:128322042-128322122 47 4.58e-05 CAACACTACC ACCTAGTG GAGATTGCCT chr20:32717611-32717691 41 4.58e-05 ctacaccacc acctagtg gacaggatgg chr5:103514953-103515033 41 4.58e-05 caacagcacc acctagtg gcatcgagat chr7:64079610-64079690 48 4.58e-05 caacagcacc acctagtg gaaatagaaa chr2:216796124-216796204 48 7.61e-05 CAACAGCGGC ATCTAGTG TTCAATCAGA chr7:2904798-2904878 37 7.61e-05 ATCTGTGACC ACCAGGTG TCGCTCATGC chr6:3732906-3732986 54 7.61e-05 GCCGGGCGCC ATCTAGTG GAGCTCCTGA chr1:10488255-10488335 46 7.61e-05 CAACACTGAC ATCTAGTG GCCAGATTAT chr15:58520079-58520159 20 7.61e-05 GTACACTGCC ACCAGGTG GAGGCAGAGT chr4:38181428-38181508 26 7.61e-05 CAAATTTTCC ACCAGGTG GCACTCTTGC chr6:11655952-11656032 33 7.61e-05 AAATTTGGCC ACCAGGTG GCACCAAATG chr8:86985738-86985818 53 7.61e-05 CCCATGCACC ATCTAGTG GGAACAGATG chr5:149016522-149016602 20 7.61e-05 AACTGTGACC ACCAGGTG GCAGCAGGGG chr21:37400888-37400968 57 7.61e-05 CTCTTGCGCC ATCTAGTG TACGAAAGGT chr10:65479888-65479968 42 7.61e-05 CTTTACCGCC ATCTAGTG TCAGTCAGGA chr22:29225509-29225589 41 7.61e-05 CTGCAGGGCC ATCTAGTG GCCAATTGTC chr4:103930424-103930504 48 7.61e-05 CAACAGTGAC ATCTAGTG ACTACATATC chr17:32078284-32078364 47 7.61e-05 TCATTCCGCC ATCTAGTG GCACTGCCAG chr1:111003019-111003099 44 7.61e-05 GTCTGCTACC ATCTAGTG GTTGAAGTGG chr7:90057232-90057312 37 7.61e-05 CAATCATGAC ATCTAGTG GCTAACCTAA chr2:46877814-46877894 44 7.61e-05 CATTAGCGCC ATCTAGTG GTGTGTTACT chr8:86209772-86209852 24 7.61e-05 CATCTTAACC ACCAGGTG GTGGTGTCGC chr11:65278374-65278454 40 7.61e-05 TCTTGCTGCC ATCTAGTG AACAAATTGG chrX:122967351-122967431 70 7.61e-05 GCCAAACCCT ACCAGGTG AAG chr9:129703039-129703119 24 7.61e-05 GTGATTGGCC ACCAGGTG GTGCTGCAGC chr16:75233367-75233447 34 7.61e-05 CATATTGGCC ACCAGGTG GCAGCCTTAT chr8:103826982-103827062 42 7.61e-05 CACAAGCGTC ATCTAGTG GTACAATCTG chr4:89436946-89437026 37 7.61e-05 CAAAAGTGCC ATCTAGTG GCAAATGCGG chr21:33973464-33973544 35 7.61e-05 GCCTGGCGGC ATCTAGTG GTCACTAGTG chr18:33864800-33864880 44 1.07e-04 CAAGTCTACC ACCTGCTG GCAGCATTAG chr11:11809446-11809526 46 1.07e-04 TAATGCTGCC ACCTGCTG GACAGCCAAC chr3:36742595-36742675 49 1.07e-04 CAAGAGCACC ACCTGCTG CCCAGGCTGT chr16:19387066-19387146 33 1.07e-04 CTCTTCCACC ACCTGCTG GTGGATTATG chr11:73372119-73372199 40 1.23e-04 CGGTAGCGGC CCCTGGTG GCTACTGCGG chr4:160124274-160124354 44 1.69e-04 AGAGAGTGCC ACCTTGTG GATCTCTAGG chr6:134418414-134418494 42 1.69e-04 CAACATTGCC ATCTGCTG GTGAAGTTGC chr1:85219370-85219450 44 1.69e-04 CAACAGCGAC ACCAAGTG GCCAGTCCGC chr19:56845038-56845118 36 1.69e-04 catgcatgcc atctgctg gtagtatgcc chr5:34898512-34898592 54 1.69e-04 GAATCCTGCC ACCTTGTG GTGCGACAGA chr2:109200523-109200603 54 1.69e-04 TTGTAGCTCC ATCTGCTG GAGAGAAGCA chr2:69152575-69152655 48 1.69e-04 TAATGTCATC ACCTTGTG GCCAGACAGG chr4:190825710-190825790 68 1.69e-04 AAACAACACC ACCTTGTG GACAA chr11:57017344-57017424 38 1.69e-04 ACCCAGCGCC ACCTTGTG GCTTCTCGCA chr4:48548504-48548584 33 1.69e-04 CTCTGCCGCC ATCTGCTG AAGAAACTTG chr1:14287015-14287095 53 1.84e-04 CCACAGTGAC CTCTGGTG GTCAAAGCAT chr5:81521524-81521604 55 1.84e-04 CTCTGGCGGT CTCTGGTG GTCAACATTA chr3:48031585-48031665 12 1.84e-04 CAAGGGAACC CTCTGGTG CTGTCAGACC chr18:6886394-6886474 36 2.44e-04 CTCTGGCGCC ATCTTGTG TCATTACTGA chr5:135223200-135223280 38 2.44e-04 CAGAACCACC ACTTGGTG GCAGTAGAGG chr5:112331866-112331946 37 2.44e-04 TCCTTCTGCC ACTTGGTG GTGCTGCGGT chr7:26404880-26404960 42 2.44e-04 TTAGAGCACC ATCTTGTG GCTCACATCA chr9:19457566-19457646 39 2.44e-04 TAATACTGCC ATCTTGTG GGTTTTTGAG chr1:27204604-27204684 37 2.44e-04 TTGGGGTGCC ACCTACTG GTTGAAAAAT chr7:28060101-28060181 40 2.44e-04 CCATACTGAC ATCTTGTG GTTACAAGTG chr17:34074631-34074711 45 2.44e-04 GTTGCCCGCC ATCTTGTG GCGACATTTA chr1:20244638-20244718 12 2.75e-04 GCAGGTTTCT CCCTAGTG GCCTGAATGA chr11:61875611-61875691 47 2.75e-04 AGTTACTGCC CCCTAGTG GATTTACAGT chr3:141179111-141179191 44 3.20e-04 TCACTGCCGT ACCAGCTG GGAGTCAGCA chr10:17299849-17299929 40 3.20e-04 AAATACTGAC ATCTACTG GTGGGTTCGG chr6:131206641-131206721 60 3.20e-04 GAGCTCTAAG ACCAGCTG AAACACCAGA chr4:68193127-68193207 35 3.66e-04 TTTTACTGAC CTCTAGTG GCCATGTCTT chr1:158094903-158094983 46 3.66e-04 TTTTGCTGCC ATCTGATG GCCATAAGCT chr1:181135859-181135939 41 3.66e-04 CGCCACTGCT CTCTAGTG GTCAACCCAG chr11:60655160-60655240 51 3.66e-04 CTACACTGCC CCCAGGTG ACCTCCTTGG chr10:6443913-6443993 44 3.66e-04 CTCTGCCTCC CTCTAGTG ACTCAAGTCC chr2:152095513-152095593 51 3.66e-04 ATCTGGCTCC CTCTAGTG CTTTTTCAGA chr17:26207183-26207263 45 3.66e-04 CAGGAGTGGC CTCTAGTG GTCATGGGGA chr1:212541478-212541558 38 3.66e-04 ttagactgcc ctctagtg ctgaaacagc chr3:155041022-155041102 35 3.66e-04 GTCTAACACC CTCTAGTG AGCGGATTGC chr7:72866265-72866345 43 3.66e-04 CTTTGCTGTC CTCTAGTG GACATTCACA chr16:66929241-66929321 56 4.27e-04 CCACACTGGC ATCAGCTG AGTGCCGTTG chr5:154022165-154022245 41 4.27e-04 cttgtacact agctggtg ctgtaggatc chr17:53603895-53603975 61 4.27e-04 AGAGACCATG ACCATGTG TAAGTCTAAG chr9:126164352-126164432 4 4.73e-04 GCA CTCAGGTG CCATGCAGCG chr2:85779327-85779407 49 4.73e-04 TGATGGTGCC CCCTGCTG GAAGCAACCA chr5:163931300-163931380 57 4.73e-04 CCATAGCTCC CCCTGCTG TTCTGATGCA chr20:36162971-36163051 37 4.73e-04 CTGTGGTGAC ACCTAATG GTAAAATGGG chr10:13414049-13414129 31 4.73e-04 AGGCAGCATA ACCTAATG CTCTGAGTCA chr3:150945653-150945733 40 5.48e-04 gcctgtatcc actaggtg gcagtagaac chr17:61502897-61502977 35 5.48e-04 ATAGTTTACC ACTAGGTG TCACTGTGGC chr4:4490265-4490345 38 5.48e-04 GGTCCCATCC ACTAGGTG GTGCTCTCCA chr1:231493717-231493797 30 5.48e-04 CTTAGTGAAC ACTAGGTG GTGCTCTTGG chr3:129995185-129995265 18 5.48e-04 CCCTGTGTTT ACTAGGTG GCGGTATAAC chr9:123518254-123518334 33 5.48e-04 CAAATTTTCC ACTAGGTG GCAGAACAGG chr11:4647583-4647663 33 5.48e-04 ttctgtttcc actaggtg gcgctgttgg chr3:24040582-24040662 71 5.48e-04 GAAAGTGACA ATTTAGTG AA chr11:116976834-11697691 44 5.48e-04 CTGCAGAGAC ACCTTCTG GTTGAAGTCC chr21:30117520-30117600 20 5.48e-04 TGGTGTAAGC ATTTAGTG GTGCAATACT chr2:64558142-64558222 37 5.48e-04 CGCAGCAGGC ACTAGGTG GCGCTAGATC chr3:40622159-40622239 30 5.48e-04 AACATCTGCC ACTAGGTG GAGCTCAGAT chr19:50487024-50487104 49 6.25e-04 CAACATCGCC CCCTTGTG GTCCCCTTGG chr17:70723992-70724072 10 6.25e-04 CATCTGTAC ACCAGATG GCAGCAGCCA chr21:47240623-47240703 27 6.25e-04 GACCATGGAC CTCTGCTG CCACCTCGTG chr9:125572749-125572829 32 6.25e-04 ATTCCTTCTC CTCTGCTG CCACCGCGTG chr18:32586107-32586187 27 6.25e-04 CTGAAATTCC ACCAGATG GCAATGTTTG chr16:55499142-55499222 69 6.25e-04 AAAAGTGGCC ACCAGATG GCGC chr19:49291550-49291630 18 6.25e-04 AACACTGACC ACCAGATG GTGCTGCAGG chr1:180485118-180485198 17 6.25e-04 ATACATATTG ACCAGATG ATGGCGGCAT chr19:33061262-33061342 50 6.25e-04 TGTGGGCTCC CTCTGCTG CTTGCAGGAG chr7:139702221-139702301 48 6.25e-04 GCTTGTTGCC CTCTGCTG GCAGAATTTG chr1:165883571-165883651 37 6.25e-04 TGTGCCTGCC ATCTAATG GTGGGATTCA chr16:5006287-5006367 9 6.25e-04 CCTACTCA CCCTTGTG TTACTCCAGG chr1:223872049-223872129 40 6.25e-04 AACTGGTGGT CTCTGCTG CCCCCTAGAT chr21:40510208-40510288 51 6.25e-04 CAATACTGTC CCCTTGTG TCCAATCTTC chr10:45730797-45730877 29 6.25e-04 TGCAATGCCC ACCAGATG GCACTCATGC chr16:84518375-84518455 48 6.25e-04 TGAGGCTGCC CTCTGCTG TTGTTTCGTG chr1:11097800-11097880 34 7.00e-04 AAACGTGGCC ATTAGGTG GCGCCATCGG chr21:40890387-40890467 23 7.00e-04 GAGAATGGCC ATTAGGTG GCGATAAAAG chr2:208610922-208611002 70 7.00e-04 CAGTTCTTCA AGCTAGTG CCA chr17:56190531-56190611 48 7.00e-04 AAGCAGCACC ATCTTCTG GCTGAAGTGG chr6:134237836-134237916 46 7.76e-04 ctgcactgcc ccCTACTG GCTGCATCCT chr5:40688387-40688467 26 7.76e-04 ATCAGAAACT CTCAAGTG GAGCAACACT chr6:5144035-5144115 49 7.76e-04 CTGCCGGGTT CTCAAGTG CTGGAAGGTG chr7:32519354-32519434 36 7.76e-04 CCACAGTGTC CTCTTGTG GTCAGTTGGT chr10:75289258-75289338 4 7.76e-04 TTT CTCAAGTG CCTCTGTTCT chr5:75552234-75552314 29 7.76e-04 GTCTGTGTGT CTCTTGTG AACCCAGGGT chr6:29557358-29557438 36 7.76e-04 ACATTGTGGA CCTTGGTG TCATCTACCG chr6:17156492-17156572 29 8.52e-04 GTCTGTGTCC AGCAGGTG GCACCAAAGG chr12:7372399-7372479 69 8.52e-04 CAACCAAGAG ATTTGCTG CCAT chr2:43086250-43086330 4 8.52e-04 GGA ATTTGCTG GCAATTCAAG chr3:4753213-4753293 34 8.52e-04 GTGATTTACC AGCAGGTG TCACTATTGA chr13:27559598-27559678 54 9.44e-04 AGCACCACCG CCCAGCTG ATGAACAGCC chr10:28952930-28953010 1 9.44e-04 . CCCAGCTG AGCGCTGCTT chr17:56525002-56525082 41 9.44e-04 ttagggtgcc ctctactg ctgagtggtt chr6:7615839-7615919 53 9.44e-04 GGCTACTGCC ACCTTATG GCAAAAAGTT chr17:37363371-37363451 64 1.03e-03 TGCAGGTGTC AGCTGCTG CCTCACTGG chr16:75798198-75798278 17 1.03e-03 GGTTTTGCAG CTCTGATG ACTTTCTTTT chr1:60225272-60225352 36 1.03e-03 GTGCTTTAGC ACCATCTG CAGGCAACCC chr6:143896633-143896713 17 1.03e-03 AGCGCTCCCT AGCTGCTG TTTTACCGTG chr7:137277170-137277250 37 1.03e-03 CAATGCTGCC ACCATCTG TCCGTTTTTA chr2:100877327-100877407 39 1.15e-03 GTGCAGTGAC CCCATGTG GCCAATTCCA chr11:113601771-11360185 54 1.15e-03 TAAGAGTGCC ATCTGGAG GATCTCCATT chr15:35370845-35370925 49 1.15e-03 AGTATTGCCT ATCAAATG CACCACAAGG chr7:111370734-111370814 40 1.24e-03 GCAGTGTGCC CCCTAATG TAACCCAGGA chr6:14067179-14067259 47 1.37e-03 CATTACTGCC ACCTAGAG CTGATATATT chr6:44047031-44047111 40 1.37e-03 TGAGGGTGAC TCCTGGTG GCCATTCATA chr13:96056678-96056758 28 1.37e-03 CGTGGTGTCT TCCTGGTG CATCAGCGCC chr6:35107814-35107894 52 1.37e-03 CAGCAGCGAC CTCATGTG GCCACAAGAA chr1:39301046-39301126 51 1.37e-03 CAACACTGCC ACCTAGAG GCCATACACT chr3:15244340-15244420 73 1.46e-03 AACCCAGCAC AGTTGGTG chr19:51286976-51287056 35 1.46e-03 CAACACCGCC ACTATGTG GTTATTTGGA chr7:75649582-75649662 50 1.46e-03 ACCCCGTGGC AGTTGGTG TGAGTGCCCC chr17:55208460-55208540 70 1.46e-03 CCACAGCACA AGCTACTG GAA chr21:39728082-39728162 48 1.64e-03 CTCTAGCGCC ACCTCGTG GGCCGTGGGA chr1:179675635-179675715 15 1.64e-03 TTTGCTTTTT CCTTGCTG CTAGGTGGCG chr3:32551786-32551866 68 1.64e-03 AGGGTTAGTT CTTAGGTG TCATT chr9:100231038-100231118 70 1.71e-03 CTTATGCCAG ATTATGTG ACT chr10:30681578-30681658 23 1.88e-03 CCCCCACATA ACCTGCAG GTGGCACCAG chr20:55125810-55125890 43 1.88e-03 AGAGAGAGCC ACTAGATG GCAGATACAG chr9:101026183-101026263 51 1.88e-03 CATCTTGCGG CCTTTGTG GGACCTGCCC chr10:45504221-45504301 32 1.88e-03 CAAAACTGTC ACTAGATG GCAGCAAAGG chr6:138437170-138437250 12 1.88e-03 TCTTTGGAAC ACTAGATG GCAGTAGCAC chr11:108519159-10851923 45 1.88e-03 ttaaggcgcc tcctagtg ctgatatggc chr5:34474766-34474846 22 1.88e-03 TAGTATGACC ACTAGATG GAGATCGTGT chr5:10452964-10453044 30 1.88e-03 AGTGTGTGAC ACTAGATG GAGACATTGT chr19:6048960-6049040 30 1.88e-03 ACTTCTCACC ACTAGATG GCCCCAGAGC chr19:40645861-40645941 29 1.88e-03 CATAATGACG ACTAGATG GCACCAGAAT chr6:166519716-166519796 22 1.88e-03 GCATAAGCAG CTTTGCTG GTGTTGTCGC chr12:51815210-51815290 45 1.99e-03 GGGCTCTTGA CCCTGGAG TCAAGGGCCA chr5:81461886-81461966 26 2.27e-03 GTGTGCTTTG CTCTTATG TGCCAACAGC chr20:49604399-49604479 37 2.27e-03 TGAAAGGACC AGTAGGTG GAGGTGAAGG chr4:41283205-41283285 33 2.27e-03 CACTATATCC AGTAGGTG GCAGCATAGG chr5:125874982-125875062 57 2.50e-03 CAACAGTGAC ACCTACAG GTCAACACTG chr14:96027392-96027472 27 2.50e-03 ATGGGAAACC AGCAGATG GCGCTGCTTC chr3:184089477-184089557 64 2.50e-03 TGGCAAAGCC TCCTGCTG AGCTGCCAA chr7:22150048-22150128 31 2.50e-03 CCATATCCCC AGCAGATG TCGCTAACGT chr5:136965393-136965473 29 2.50e-03 CTAAACTAAC AGCAGATG GTGCTGTTGT chr3:5347221-5347301 33 2.58e-03 AAAGAACGGC CCCTAGAG GGCAACATGG chr1:184774852-184774932 25 2.79e-03 GATGCTGAGG ACCAGCAG TGGCCGCTAG chr1:45766068-45766148 50 2.79e-03 CAATGATGAC ATCTACAG GTCATATGAA chr5:173046092-173046172 18 2.79e-03 TGTAATACAC ACCAGCAG TCATCAGAGA chr1:165562322-165562402 6 2.79e-03 GACAG ACCAGCAG CTCAGAGATC chr12:114418473-11441855 27 2.79e-03 CTATATAGCT ACCAGCAG GGGACGCCAA chr2:105986399-105986479 55 3.17e-03 CGTTCCTTCT CCTAACTG AATCGCACAC chr4:139951947-139952027 60 3.17e-03 CAGAGATGCC TTCTTGTG CCATTGATGG chr2:26174027-26174107 59 3.17e-03 AGCCAATGGC CGCAGCTG CACCCAAGGA chr22:18558947-18559027 43 3.17e-03 CTGTGCCTCC ATCTCCTG GACAAATTTG chr7:45175879-45175959 3 3.32e-03 aa ctcaggag aacatcaact chr6:136547516-136547596 32 3.32e-03 TTATACTGTC CTCTCGTG GTAAATATGG chr19:40811391-40811471 47 3.32e-03 AGCTGGTCAT CCCTGCAG AAACCCAGCT chr10:17649661-17649741 7 3.54e-03 AACAAG TTCTACTG TTGCTCCATA chr6:3279939-3280019 2 3.54e-03 C CTTTTCTG CTTTTCTCTG chr19:6022424-6022504 55 3.69e-03 AGACAGCGCC ACCTCATG GTGACAGAGA chr6:25071154-25071234 63 4.10e-03 CATTGCAGTT TCCTAATG TACCTACTTG chr4:13550694-13550774 68 4.54e-03 GTTGTGCGTA CTTTTATG GGGAG chr14:23246818-23246898 11 4.54e-03 AGAGTCATGC AGTTTCTG TCCGGTAGGT chr1:236267081-236267161 26 4.78e-03 AGAAGTTTCC AGTAGATG GCGCCAAAGT chr13:51644327-51644407 2 4.78e-03 C ATTAAGAG GACCAGCGGG chr8:41400358-41400438 27 4.78e-03 AGCCCGTGTC AGTAGATG GGGCCATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCWRGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:55257728-55257808 1.6e-05 34_[+1]_38 chr15:51942268-51942348 1.6e-05 36_[+1]_36 chr6:39277851-39277931 1.6e-05 44_[+1]_28 chr7:138423604-138423684 1.6e-05 50_[+1]_22 chr11:12303526-12303606 1.6e-05 48_[+1]_24 chr9:96975923-96976003 3.1e-05 43_[+1]_29 chr7:111375881-111375961 3.1e-05 43_[+1]_29 chr11:4094075-4094155 3.1e-05 36_[+1]_36 chr12:51745849-51745929 3.1e-05 38_[+1]_34 chr19:35203734-35203814 4.6e-05 42_[+1]_30 chr5:14648822-14648902 4.6e-05 46_[+1]_26 chr1:11702622-11702702 4.6e-05 40_[+1]_32 chr8:61309556-61309636 4.6e-05 40_[+1]_32 chr10:33297780-33297860 4.6e-05 51_[+1]_21 chr12:49012378-49012458 4.6e-05 40_[+1]_32 chr4:128322042-128322122 4.6e-05 46_[+1]_26 chr20:32717611-32717691 4.6e-05 40_[+1]_32 chr5:103514953-103515033 4.6e-05 40_[+1]_32 chr7:64079610-64079690 4.6e-05 47_[+1]_25 chr2:216796124-216796204 7.6e-05 47_[+1]_25 chr7:2904798-2904878 7.6e-05 36_[+1]_36 chr6:3732906-3732986 7.6e-05 53_[+1]_19 chr1:10488255-10488335 7.6e-05 45_[+1]_27 chr15:58520079-58520159 7.6e-05 19_[+1]_53 chr4:38181428-38181508 7.6e-05 25_[+1]_47 chr6:11655952-11656032 7.6e-05 32_[+1]_40 chr8:86985738-86985818 7.6e-05 52_[+1]_20 chr5:149016522-149016602 7.6e-05 19_[+1]_53 chr21:37400888-37400968 7.6e-05 56_[+1]_16 chr10:65479888-65479968 7.6e-05 41_[+1]_31 chr22:29225509-29225589 7.6e-05 40_[+1]_32 chr4:103930424-103930504 7.6e-05 47_[+1]_25 chr17:32078284-32078364 7.6e-05 46_[+1]_26 chr1:111003019-111003099 7.6e-05 43_[+1]_29 chr7:90057232-90057312 7.6e-05 36_[+1]_36 chr2:46877814-46877894 7.6e-05 43_[+1]_29 chr8:86209772-86209852 7.6e-05 23_[+1]_49 chr11:65278374-65278454 7.6e-05 39_[+1]_33 chrX:122967351-122967431 7.6e-05 69_[+1]_3 chr9:129703039-129703119 7.6e-05 23_[+1]_49 chr16:75233367-75233447 7.6e-05 33_[+1]_39 chr8:103826982-103827062 7.6e-05 41_[+1]_31 chr4:89436946-89437026 7.6e-05 36_[+1]_36 chr21:33973464-33973544 7.6e-05 34_[+1]_38 chr18:33864800-33864880 0.00011 43_[+1]_29 chr11:11809446-11809526 0.00011 45_[+1]_27 chr3:36742595-36742675 0.00011 48_[+1]_24 chr16:19387066-19387146 0.00011 32_[+1]_40 chr11:73372119-73372199 0.00012 39_[+1]_33 chr4:160124274-160124354 0.00017 43_[+1]_29 chr6:134418414-134418494 0.00017 41_[+1]_31 chr1:85219370-85219450 0.00017 43_[+1]_29 chr19:56845038-56845118 0.00017 35_[+1]_37 chr5:34898512-34898592 0.00017 53_[+1]_19 chr2:109200523-109200603 0.00017 53_[+1]_19 chr2:69152575-69152655 0.00017 47_[+1]_25 chr4:190825710-190825790 0.00017 67_[+1]_5 chr11:57017344-57017424 0.00017 37_[+1]_35 chr4:48548504-48548584 0.00017 32_[+1]_40 chr1:14287015-14287095 0.00018 52_[+1]_20 chr5:81521524-81521604 0.00018 54_[+1]_18 chr3:48031585-48031665 0.00018 11_[+1]_61 chr18:6886394-6886474 0.00024 35_[+1]_37 chr5:135223200-135223280 0.00024 37_[+1]_35 chr5:112331866-112331946 0.00024 36_[+1]_36 chr7:26404880-26404960 0.00024 41_[+1]_31 chr9:19457566-19457646 0.00024 38_[+1]_34 chr1:27204604-27204684 0.00024 36_[+1]_36 chr7:28060101-28060181 0.00024 39_[+1]_33 chr17:34074631-34074711 0.00024 44_[+1]_28 chr1:20244638-20244718 0.00027 11_[+1]_61 chr11:61875611-61875691 0.00027 46_[+1]_26 chr3:141179111-141179191 0.00032 43_[+1]_29 chr10:17299849-17299929 0.00032 39_[+1]_33 chr6:131206641-131206721 0.00032 59_[+1]_13 chr4:68193127-68193207 0.00037 34_[+1]_38 chr1:158094903-158094983 0.00037 45_[+1]_27 chr1:181135859-181135939 0.00037 40_[+1]_32 chr11:60655160-60655240 0.00037 50_[+1]_22 chr10:6443913-6443993 0.00037 43_[+1]_29 chr2:152095513-152095593 0.00037 50_[+1]_22 chr17:26207183-26207263 0.00037 44_[+1]_28 chr1:212541478-212541558 0.00037 37_[+1]_35 chr3:155041022-155041102 0.00037 34_[+1]_38 chr7:72866265-72866345 0.00037 42_[+1]_30 chr16:66929241-66929321 0.00043 55_[+1]_17 chr5:154022165-154022245 0.00043 40_[+1]_32 chr17:53603895-53603975 0.00043 60_[+1]_12 chr9:126164352-126164432 0.00047 3_[+1]_69 chr2:85779327-85779407 0.00047 48_[+1]_24 chr5:163931300-163931380 0.00047 56_[+1]_16 chr20:36162971-36163051 0.00047 36_[+1]_36 chr10:13414049-13414129 0.00047 30_[+1]_42 chr3:150945653-150945733 0.00055 39_[+1]_33 chr17:61502897-61502977 0.00055 34_[+1]_38 chr4:4490265-4490345 0.00055 37_[+1]_35 chr1:231493717-231493797 0.00055 29_[+1]_43 chr3:129995185-129995265 0.00055 17_[+1]_55 chr9:123518254-123518334 0.00055 32_[+1]_40 chr11:4647583-4647663 0.00055 32_[+1]_40 chr3:24040582-24040662 0.00055 70_[+1]_2 chr11:116976834-11697691 0.00055 43_[+1]_29 chr21:30117520-30117600 0.00055 19_[+1]_53 chr2:64558142-64558222 0.00055 36_[+1]_36 chr3:40622159-40622239 0.00055 29_[+1]_43 chr19:50487024-50487104 0.00063 48_[+1]_24 chr17:70723992-70724072 0.00063 9_[+1]_63 chr21:47240623-47240703 0.00063 26_[+1]_46 chr9:125572749-125572829 0.00063 31_[+1]_41 chr18:32586107-32586187 0.00063 26_[+1]_46 chr16:55499142-55499222 0.00063 68_[+1]_4 chr19:49291550-49291630 0.00063 17_[+1]_55 chr1:180485118-180485198 0.00063 16_[+1]_56 chr19:33061262-33061342 0.00063 49_[+1]_23 chr7:139702221-139702301 0.00063 47_[+1]_25 chr1:165883571-165883651 0.00063 36_[+1]_36 chr16:5006287-5006367 0.00063 8_[+1]_64 chr1:223872049-223872129 0.00063 39_[+1]_33 chr21:40510208-40510288 0.00063 50_[+1]_22 chr10:45730797-45730877 0.00063 28_[+1]_44 chr16:84518375-84518455 0.00063 47_[+1]_25 chr1:11097800-11097880 0.0007 33_[+1]_39 chr21:40890387-40890467 0.0007 22_[+1]_50 chr2:208610922-208611002 0.0007 69_[+1]_3 chr17:56190531-56190611 0.0007 47_[+1]_25 chr6:134237836-134237916 0.00078 45_[+1]_27 chr5:40688387-40688467 0.00078 25_[+1]_47 chr6:5144035-5144115 0.00078 48_[+1]_24 chr7:32519354-32519434 0.00078 35_[+1]_37 chr10:75289258-75289338 0.00078 3_[+1]_69 chr5:75552234-75552314 0.00078 28_[+1]_44 chr6:29557358-29557438 0.00078 35_[+1]_37 chr6:17156492-17156572 0.00085 28_[+1]_44 chr12:7372399-7372479 0.00085 68_[+1]_4 chr2:43086250-43086330 0.00085 3_[+1]_69 chr3:4753213-4753293 0.00085 33_[+1]_39 chr13:27559598-27559678 0.00094 53_[+1]_19 chr10:28952930-28953010 0.00094 [+1]_72 chr17:56525002-56525082 0.00094 40_[+1]_32 chr6:7615839-7615919 0.00094 52_[+1]_20 chr17:37363371-37363451 0.001 63_[+1]_9 chr16:75798198-75798278 0.001 16_[+1]_56 chr1:60225272-60225352 0.001 35_[+1]_37 chr6:143896633-143896713 0.001 16_[+1]_56 chr7:137277170-137277250 0.001 36_[+1]_36 chr2:100877327-100877407 0.0012 38_[+1]_34 chr11:113601771-11360185 0.0012 53_[+1]_19 chr15:35370845-35370925 0.0012 48_[+1]_24 chr7:111370734-111370814 0.0012 39_[+1]_33 chr6:14067179-14067259 0.0014 46_[+1]_26 chr6:44047031-44047111 0.0014 39_[+1]_33 chr13:96056678-96056758 0.0014 27_[+1]_45 chr6:35107814-35107894 0.0014 51_[+1]_21 chr1:39301046-39301126 0.0014 50_[+1]_22 chr3:15244340-15244420 0.0015 72_[+1] chr19:51286976-51287056 0.0015 34_[+1]_38 chr7:75649582-75649662 0.0015 49_[+1]_23 chr17:55208460-55208540 0.0015 69_[+1]_3 chr21:39728082-39728162 0.0016 47_[+1]_25 chr1:179675635-179675715 0.0016 14_[+1]_58 chr3:32551786-32551866 0.0016 67_[+1]_5 chr9:100231038-100231118 0.0017 69_[+1]_3 chr10:30681578-30681658 0.0019 22_[+1]_50 chr20:55125810-55125890 0.0019 42_[+1]_30 chr9:101026183-101026263 0.0019 50_[+1]_22 chr10:45504221-45504301 0.0019 31_[+1]_41 chr6:138437170-138437250 0.0019 11_[+1]_61 chr11:108519159-10851923 0.0019 44_[+1]_28 chr5:34474766-34474846 0.0019 21_[+1]_51 chr5:10452964-10453044 0.0019 29_[+1]_43 chr19:6048960-6049040 0.0019 29_[+1]_43 chr19:40645861-40645941 0.0019 28_[+1]_44 chr6:166519716-166519796 0.0019 21_[+1]_51 chr12:51815210-51815290 0.002 44_[+1]_28 chr5:81461886-81461966 0.0023 25_[+1]_47 chr20:49604399-49604479 0.0023 36_[+1]_36 chr4:41283205-41283285 0.0023 32_[+1]_40 chr5:125874982-125875062 0.0025 56_[+1]_16 chr14:96027392-96027472 0.0025 26_[+1]_46 chr3:184089477-184089557 0.0025 63_[+1]_9 chr7:22150048-22150128 0.0025 30_[+1]_42 chr5:136965393-136965473 0.0025 28_[+1]_44 chr3:5347221-5347301 0.0026 32_[+1]_40 chr1:184774852-184774932 0.0028 24_[+1]_48 chr1:45766068-45766148 0.0028 49_[+1]_23 chr5:173046092-173046172 0.0028 17_[+1]_55 chr1:165562322-165562402 0.0028 5_[+1]_67 chr12:114418473-11441855 0.0028 26_[+1]_46 chr2:105986399-105986479 0.0032 54_[+1]_18 chr4:139951947-139952027 0.0032 59_[+1]_13 chr2:26174027-26174107 0.0032 58_[+1]_14 chr22:18558947-18559027 0.0032 42_[+1]_30 chr7:45175879-45175959 0.0033 2_[+1]_70 chr6:136547516-136547596 0.0033 31_[+1]_41 chr19:40811391-40811471 0.0033 46_[+1]_26 chr10:17649661-17649741 0.0035 6_[+1]_66 chr6:3279939-3280019 0.0035 1_[+1]_71 chr19:6022424-6022504 0.0037 54_[+1]_18 chr6:25071154-25071234 0.0041 62_[+1]_10 chr4:13550694-13550774 0.0045 67_[+1]_5 chr14:23246818-23246898 0.0045 10_[+1]_62 chr1:236267081-236267161 0.0048 25_[+1]_47 chr13:51644327-51644407 0.0048 1_[+1]_71 chr8:41400358-41400438 0.0048 26_[+1]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCWRGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AYCWRGTG width=8 seqs=204 chr1:55257728-55257808 ( 35) ACCTGGTG 1 chr15:51942268-51942348 ( 37) ACCTGGTG 1 chr6:39277851-39277931 ( 45) ACCTGGTG 1 chr7:138423604-138423684 ( 51) ACCTGGTG 1 chr11:12303526-12303606 ( 49) ACCTGGTG 1 chr9:96975923-96976003 ( 44) ATCTGGTG 1 chr7:111375881-111375961 ( 44) ATCTGGTG 1 chr11:4094075-4094155 ( 37) ATCTGGTG 1 chr12:51745849-51745929 ( 39) ATCTGGTG 1 chr19:35203734-35203814 ( 43) ACCTAGTG 1 chr5:14648822-14648902 ( 47) ACCTAGTG 1 chr1:11702622-11702702 ( 41) ACCTAGTG 1 chr8:61309556-61309636 ( 41) ACCTAGTG 1 chr10:33297780-33297860 ( 52) ACCTAGTG 1 chr12:49012378-49012458 ( 41) ACCTAGTG 1 chr4:128322042-128322122 ( 47) ACCTAGTG 1 chr20:32717611-32717691 ( 41) ACCTAGTG 1 chr5:103514953-103515033 ( 41) ACCTAGTG 1 chr7:64079610-64079690 ( 48) ACCTAGTG 1 chr2:216796124-216796204 ( 48) ATCTAGTG 1 chr7:2904798-2904878 ( 37) ACCAGGTG 1 chr6:3732906-3732986 ( 54) ATCTAGTG 1 chr1:10488255-10488335 ( 46) ATCTAGTG 1 chr15:58520079-58520159 ( 20) ACCAGGTG 1 chr4:38181428-38181508 ( 26) ACCAGGTG 1 chr6:11655952-11656032 ( 33) ACCAGGTG 1 chr8:86985738-86985818 ( 53) ATCTAGTG 1 chr5:149016522-149016602 ( 20) ACCAGGTG 1 chr21:37400888-37400968 ( 57) ATCTAGTG 1 chr10:65479888-65479968 ( 42) ATCTAGTG 1 chr22:29225509-29225589 ( 41) ATCTAGTG 1 chr4:103930424-103930504 ( 48) ATCTAGTG 1 chr17:32078284-32078364 ( 47) ATCTAGTG 1 chr1:111003019-111003099 ( 44) ATCTAGTG 1 chr7:90057232-90057312 ( 37) ATCTAGTG 1 chr2:46877814-46877894 ( 44) ATCTAGTG 1 chr8:86209772-86209852 ( 24) ACCAGGTG 1 chr11:65278374-65278454 ( 40) ATCTAGTG 1 chrX:122967351-122967431 ( 70) ACCAGGTG 1 chr9:129703039-129703119 ( 24) ACCAGGTG 1 chr16:75233367-75233447 ( 34) ACCAGGTG 1 chr8:103826982-103827062 ( 42) ATCTAGTG 1 chr4:89436946-89437026 ( 37) ATCTAGTG 1 chr21:33973464-33973544 ( 35) ATCTAGTG 1 chr18:33864800-33864880 ( 44) ACCTGCTG 1 chr11:11809446-11809526 ( 46) ACCTGCTG 1 chr3:36742595-36742675 ( 49) ACCTGCTG 1 chr16:19387066-19387146 ( 33) ACCTGCTG 1 chr11:73372119-73372199 ( 40) CCCTGGTG 1 chr4:160124274-160124354 ( 44) ACCTTGTG 1 chr6:134418414-134418494 ( 42) ATCTGCTG 1 chr1:85219370-85219450 ( 44) ACCAAGTG 1 chr19:56845038-56845118 ( 36) ATCTGCTG 1 chr5:34898512-34898592 ( 54) ACCTTGTG 1 chr2:109200523-109200603 ( 54) ATCTGCTG 1 chr2:69152575-69152655 ( 48) ACCTTGTG 1 chr4:190825710-190825790 ( 68) ACCTTGTG 1 chr11:57017344-57017424 ( 38) ACCTTGTG 1 chr4:48548504-48548584 ( 33) ATCTGCTG 1 chr1:14287015-14287095 ( 53) CTCTGGTG 1 chr5:81521524-81521604 ( 55) CTCTGGTG 1 chr3:48031585-48031665 ( 12) CTCTGGTG 1 chr18:6886394-6886474 ( 36) ATCTTGTG 1 chr5:135223200-135223280 ( 38) ACTTGGTG 1 chr5:112331866-112331946 ( 37) ACTTGGTG 1 chr7:26404880-26404960 ( 42) ATCTTGTG 1 chr9:19457566-19457646 ( 39) ATCTTGTG 1 chr1:27204604-27204684 ( 37) ACCTACTG 1 chr7:28060101-28060181 ( 40) ATCTTGTG 1 chr17:34074631-34074711 ( 45) ATCTTGTG 1 chr1:20244638-20244718 ( 12) CCCTAGTG 1 chr11:61875611-61875691 ( 47) CCCTAGTG 1 chr3:141179111-141179191 ( 44) ACCAGCTG 1 chr10:17299849-17299929 ( 40) ATCTACTG 1 chr6:131206641-131206721 ( 60) ACCAGCTG 1 chr4:68193127-68193207 ( 35) CTCTAGTG 1 chr1:158094903-158094983 ( 46) ATCTGATG 1 chr1:181135859-181135939 ( 41) CTCTAGTG 1 chr11:60655160-60655240 ( 51) CCCAGGTG 1 chr10:6443913-6443993 ( 44) CTCTAGTG 1 chr2:152095513-152095593 ( 51) CTCTAGTG 1 chr17:26207183-26207263 ( 45) CTCTAGTG 1 chr1:212541478-212541558 ( 38) CTCTAGTG 1 chr3:155041022-155041102 ( 35) CTCTAGTG 1 chr7:72866265-72866345 ( 43) CTCTAGTG 1 chr16:66929241-66929321 ( 56) ATCAGCTG 1 chr5:154022165-154022245 ( 41) AGCTGGTG 1 chr17:53603895-53603975 ( 61) ACCATGTG 1 chr9:126164352-126164432 ( 4) CTCAGGTG 1 chr2:85779327-85779407 ( 49) CCCTGCTG 1 chr5:163931300-163931380 ( 57) CCCTGCTG 1 chr20:36162971-36163051 ( 37) ACCTAATG 1 chr10:13414049-13414129 ( 31) ACCTAATG 1 chr3:150945653-150945733 ( 40) ACTAGGTG 1 chr17:61502897-61502977 ( 35) ACTAGGTG 1 chr4:4490265-4490345 ( 38) ACTAGGTG 1 chr1:231493717-231493797 ( 30) ACTAGGTG 1 chr3:129995185-129995265 ( 18) ACTAGGTG 1 chr9:123518254-123518334 ( 33) ACTAGGTG 1 chr11:4647583-4647663 ( 33) ACTAGGTG 1 chr3:24040582-24040662 ( 71) ATTTAGTG 1 chr11:116976834-11697691 ( 44) ACCTTCTG 1 chr21:30117520-30117600 ( 20) ATTTAGTG 1 chr2:64558142-64558222 ( 37) ACTAGGTG 1 chr3:40622159-40622239 ( 30) ACTAGGTG 1 chr19:50487024-50487104 ( 49) CCCTTGTG 1 chr17:70723992-70724072 ( 10) ACCAGATG 1 chr21:47240623-47240703 ( 27) CTCTGCTG 1 chr9:125572749-125572829 ( 32) CTCTGCTG 1 chr18:32586107-32586187 ( 27) ACCAGATG 1 chr16:55499142-55499222 ( 69) ACCAGATG 1 chr19:49291550-49291630 ( 18) ACCAGATG 1 chr1:180485118-180485198 ( 17) ACCAGATG 1 chr19:33061262-33061342 ( 50) CTCTGCTG 1 chr7:139702221-139702301 ( 48) CTCTGCTG 1 chr1:165883571-165883651 ( 37) ATCTAATG 1 chr16:5006287-5006367 ( 9) CCCTTGTG 1 chr1:223872049-223872129 ( 40) CTCTGCTG 1 chr21:40510208-40510288 ( 51) CCCTTGTG 1 chr10:45730797-45730877 ( 29) ACCAGATG 1 chr16:84518375-84518455 ( 48) CTCTGCTG 1 chr1:11097800-11097880 ( 34) ATTAGGTG 1 chr21:40890387-40890467 ( 23) ATTAGGTG 1 chr2:208610922-208611002 ( 70) AGCTAGTG 1 chr17:56190531-56190611 ( 48) ATCTTCTG 1 chr6:134237836-134237916 ( 46) CCCTACTG 1 chr5:40688387-40688467 ( 26) CTCAAGTG 1 chr6:5144035-5144115 ( 49) CTCAAGTG 1 chr7:32519354-32519434 ( 36) CTCTTGTG 1 chr10:75289258-75289338 ( 4) CTCAAGTG 1 chr5:75552234-75552314 ( 29) CTCTTGTG 1 chr6:29557358-29557438 ( 36) CCTTGGTG 1 chr6:17156492-17156572 ( 29) AGCAGGTG 1 chr12:7372399-7372479 ( 69) ATTTGCTG 1 chr2:43086250-43086330 ( 4) ATTTGCTG 1 chr3:4753213-4753293 ( 34) AGCAGGTG 1 chr13:27559598-27559678 ( 54) CCCAGCTG 1 chr10:28952930-28953010 ( 1) CCCAGCTG 1 chr17:56525002-56525082 ( 41) CTCTACTG 1 chr6:7615839-7615919 ( 53) ACCTTATG 1 chr17:37363371-37363451 ( 64) AGCTGCTG 1 chr16:75798198-75798278 ( 17) CTCTGATG 1 chr1:60225272-60225352 ( 36) ACCATCTG 1 chr6:143896633-143896713 ( 17) AGCTGCTG 1 chr7:137277170-137277250 ( 37) ACCATCTG 1 chr2:100877327-100877407 ( 39) CCCATGTG 1 chr11:113601771-11360185 ( 54) ATCTGGAG 1 chr15:35370845-35370925 ( 49) ATCAAATG 1 chr7:111370734-111370814 ( 40) CCCTAATG 1 chr6:14067179-14067259 ( 47) ACCTAGAG 1 chr6:44047031-44047111 ( 40) TCCTGGTG 1 chr13:96056678-96056758 ( 28) TCCTGGTG 1 chr6:35107814-35107894 ( 52) CTCATGTG 1 chr1:39301046-39301126 ( 51) ACCTAGAG 1 chr3:15244340-15244420 ( 73) AGTTGGTG 1 chr19:51286976-51287056 ( 35) ACTATGTG 1 chr7:75649582-75649662 ( 50) AGTTGGTG 1 chr17:55208460-55208540 ( 70) AGCTACTG 1 chr21:39728082-39728162 ( 48) ACCTCGTG 1 chr1:179675635-179675715 ( 15) CCTTGCTG 1 chr3:32551786-32551866 ( 68) CTTAGGTG 1 chr9:100231038-100231118 ( 70) ATTATGTG 1 chr10:30681578-30681658 ( 23) ACCTGCAG 1 chr20:55125810-55125890 ( 43) ACTAGATG 1 chr9:101026183-101026263 ( 51) CCTTTGTG 1 chr10:45504221-45504301 ( 32) ACTAGATG 1 chr6:138437170-138437250 ( 12) ACTAGATG 1 chr11:108519159-10851923 ( 45) TCCTAGTG 1 chr5:34474766-34474846 ( 22) ACTAGATG 1 chr5:10452964-10453044 ( 30) ACTAGATG 1 chr19:6048960-6049040 ( 30) ACTAGATG 1 chr19:40645861-40645941 ( 29) ACTAGATG 1 chr6:166519716-166519796 ( 22) CTTTGCTG 1 chr12:51815210-51815290 ( 45) CCCTGGAG 1 chr5:81461886-81461966 ( 26) CTCTTATG 1 chr20:49604399-49604479 ( 37) AGTAGGTG 1 chr4:41283205-41283285 ( 33) AGTAGGTG 1 chr5:125874982-125875062 ( 57) ACCTACAG 1 chr14:96027392-96027472 ( 27) AGCAGATG 1 chr3:184089477-184089557 ( 64) TCCTGCTG 1 chr7:22150048-22150128 ( 31) AGCAGATG 1 chr5:136965393-136965473 ( 29) AGCAGATG 1 chr3:5347221-5347301 ( 33) CCCTAGAG 1 chr1:184774852-184774932 ( 25) ACCAGCAG 1 chr1:45766068-45766148 ( 50) ATCTACAG 1 chr5:173046092-173046172 ( 18) ACCAGCAG 1 chr1:165562322-165562402 ( 6) ACCAGCAG 1 chr12:114418473-11441855 ( 27) ACCAGCAG 1 chr2:105986399-105986479 ( 55) CCTAACTG 1 chr4:139951947-139952027 ( 60) TTCTTGTG 1 chr2:26174027-26174107 ( 59) CGCAGCTG 1 chr22:18558947-18559027 ( 43) ATCTCCTG 1 chr7:45175879-45175959 ( 3) CTCAGGAG 1 chr6:136547516-136547596 ( 32) CTCTCGTG 1 chr19:40811391-40811471 ( 47) CCCTGCAG 1 chr10:17649661-17649741 ( 7) TTCTACTG 1 chr6:3279939-3280019 ( 2) CTTTTCTG 1 chr19:6022424-6022504 ( 55) ACCTCATG 1 chr6:25071154-25071234 ( 63) TCCTAATG 1 chr4:13550694-13550774 ( 68) CTTTTATG 1 chr14:23246818-23246898 ( 11) AGTTTCTG 1 chr1:236267081-236267161 ( 26) AGTAGATG 1 chr13:51644327-51644407 ( 2) ATTAAGAG 1 chr8:41400358-41400438 ( 27) AGTAGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCWRGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.09724 E= 4.9e-078 150 8 -1432 -284 -1432 101 -152 69 -1432 164 -1432 -26 48 -1432 -1432 142 32 -370 104 -69 -75 -3 126 -1432 -175 -1432 -1432 191 -1432 -1432 199 -1432 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCWRGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 204 E= 4.9e-078 0.696078 0.269608 0.000000 0.034314 0.000000 0.514706 0.088235 0.397059 0.000000 0.794118 0.000000 0.205882 0.343137 0.000000 0.000000 0.656863 0.308824 0.019608 0.519608 0.151961 0.147059 0.250000 0.602941 0.000000 0.073529 0.000000 0.000000 0.926471 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCWRGTG MEME-1 regular expression -------------------------------------------------------------------------------- [AC][CT][CT][TA][GA][GC]TG -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAKGGCR MEME-2 width = 8 sites = 41 llr = 359 E-value = 8.5e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAKGGCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:8::::6 pos.-specific C ::::::a: probability G :a24a8:4 matrix T :::6:2:: bits 2.0 ** * * 1.8 ** * * 1.6 ** * * 1.4 ** *** Relative 1.2 *** *** Entropy 1.0 ******** (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGCA consensus GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGGCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:184774852-184774932 41 1.51e-05 AGTGGCCGCT AGATGGCA GAAGAGGCAT chr4:139951947-139952027 25 1.51e-05 CATGGCCAGT AGATGGCA GCATTGGATT chr12:70273311-70273391 28 1.51e-05 CCTGTCCAGG AGATGGCA GTGTTGAGAC chr20:5509681-5509761 38 1.51e-05 AGGTACCACA AGATGGCA GCACATGCAC chr2:43086250-43086330 33 1.51e-05 GTCTACCACC AGATGGCA GTGGTGCTTT chr19:39612832-39612912 47 3.06e-05 aggaggcagc agagggca gtcaatgaga chr16:77709783-77709863 27 3.06e-05 ACTATCCAGC AGAGGGCA GGATTATACA chr1:228800283-228800363 38 3.06e-05 ATTGTCCGGC AGAGGGCA GCATTACCCC chr6:3279939-3280019 30 3.06e-05 GGTTGTCACT AGAGGGCA GCATACGCCC chr1:43693078-43693158 35 3.06e-05 TTTGGCCACC AGAGGGCA GTGTGTACTC chr8:10444963-10445043 36 3.06e-05 GTTTAGCAGT AGAGGGCA TTGTTTACTT chr8:145181496-145181576 36 3.06e-05 AGTAGCCACC AGAGGGCA TGATTTACCT chr15:42996752-42996832 28 3.06e-05 tcttagcgct agagggca ctgtaagcct chr7:131374022-131374102 45 3.06e-05 TCTGTCCACC AGAGGGCA GGAGAGACCA chr17:53603895-53603975 40 3.06e-05 CCTCGCCAGC AGAGGGCA TTAAGAGACC chr8:37637498-37637578 28 4.61e-05 AATTGCCTCT AGATGGCG ACATTGGCTA chr15:81567534-81567614 35 4.61e-05 GATGACCACG AGATGGCG CTGTCCAGCA chr12:7372399-7372479 34 4.61e-05 ACTAAACAGC AGATGGCG CCAAAGGACC chr6:5144035-5144115 7 4.61e-05 GCCAGC AGATGGCG ACAGAGGCCT chr19:40811391-40811471 22 4.61e-05 ACTTGCCACA AGATGGCG CCACATGAGC chr17:55208460-55208540 52 4.61e-05 TTAGACCACT AGATGGCG CCACAGCACA chr5:87077102-87077182 33 4.61e-05 CAAAGCCGCT AGATGGCG TGAGAGCACT chr5:81608306-81608386 28 6.19e-05 GCCTGACAAA AGAGGGCG CCATTGTACT chr10:28952930-28953010 32 6.19e-05 TCTCACCACA AGAGGGCG AGAAAGACCT chr3:20381966-20382046 30 6.19e-05 TTCAGCCAGC AGAGGGCG GGAGAGCCAC chr1:20244638-20244718 40 6.19e-05 AATGGACACC AGAGGGCG CCTCAGGACC chr10:17649661-17649741 24 7.73e-05 GTTGCTCCAT AGGTGGCA GTATTGTACC chr7:99510896-99510976 41 7.73e-05 AACTGCCAGG AGGTGGCA GGAGCGCAAC chr2:105986399-105986479 33 7.73e-05 CAATACCGGC AGGTGGCA GGAGCGTTCC chr17:41654156-41654236 30 7.73e-05 TGCTGCCACA AGGTGGCA GTGTTGGCAA chr13:27559598-27559678 12 1.08e-04 TCTGGCCAGT AGATGTCA GGCTAAGACA chr9:126164352-126164432 33 1.08e-04 TCTCTCCATA AGGGGGCA ATCATAATCC chr7:111381949-111382029 31 1.08e-04 AAAAACCACA AGATGTCA CTATTGGATA chr5:41856911-41856991 27 1.39e-04 TTTGTCCACT AGAGGTCA CCAGAGGCCT chr1:168409139-168409219 42 1.39e-04 CAGAGACAGG AGGTGGCG CTCTTTCTCC chr1:179675635-179675715 25 1.39e-04 CCTTGCTGCT AGGTGGCG CTCTAGGACA chr5:135223200-135223280 51 1.39e-04 TGGTGGCAGT AGAGGTCA ACTAAACCCT chr3:141179111-141179191 29 1.39e-04 TCCTGCCAGC AGAGGTCA CTGCCGTACC chr10:49866455-49866535 38 1.39e-04 TGAAGCCACG AGGTGGCG CCCTCAGCAC chr16:66929241-66929321 30 1.70e-04 AGTTGCCTCT AGATGTCG CCATCTGACC chrX:122967351-122967431 42 2.00e-04 TATGACCACC AGGTGTCA GCCTCCCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGGCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:184774852-184774932 1.5e-05 40_[+2]_32 chr4:139951947-139952027 1.5e-05 24_[+2]_48 chr12:70273311-70273391 1.5e-05 27_[+2]_45 chr20:5509681-5509761 1.5e-05 37_[+2]_35 chr2:43086250-43086330 1.5e-05 32_[+2]_40 chr19:39612832-39612912 3.1e-05 46_[+2]_26 chr16:77709783-77709863 3.1e-05 26_[+2]_46 chr1:228800283-228800363 3.1e-05 37_[+2]_35 chr6:3279939-3280019 3.1e-05 29_[+2]_43 chr1:43693078-43693158 3.1e-05 34_[+2]_38 chr8:10444963-10445043 3.1e-05 35_[+2]_37 chr8:145181496-145181576 3.1e-05 35_[+2]_37 chr15:42996752-42996832 3.1e-05 27_[+2]_45 chr7:131374022-131374102 3.1e-05 44_[+2]_28 chr17:53603895-53603975 3.1e-05 39_[+2]_33 chr8:37637498-37637578 4.6e-05 27_[+2]_45 chr15:81567534-81567614 4.6e-05 34_[+2]_38 chr12:7372399-7372479 4.6e-05 33_[+2]_39 chr6:5144035-5144115 4.6e-05 6_[+2]_66 chr19:40811391-40811471 4.6e-05 21_[+2]_51 chr17:55208460-55208540 4.6e-05 51_[+2]_21 chr5:87077102-87077182 4.6e-05 32_[+2]_40 chr5:81608306-81608386 6.2e-05 27_[+2]_45 chr10:28952930-28953010 6.2e-05 31_[+2]_41 chr3:20381966-20382046 6.2e-05 29_[+2]_43 chr1:20244638-20244718 6.2e-05 39_[+2]_33 chr10:17649661-17649741 7.7e-05 23_[+2]_49 chr7:99510896-99510976 7.7e-05 40_[+2]_32 chr2:105986399-105986479 7.7e-05 32_[+2]_40 chr17:41654156-41654236 7.7e-05 29_[+2]_43 chr13:27559598-27559678 0.00011 11_[+2]_61 chr9:126164352-126164432 0.00011 32_[+2]_40 chr7:111381949-111382029 0.00011 30_[+2]_42 chr5:41856911-41856991 0.00014 26_[+2]_46 chr1:168409139-168409219 0.00014 41_[+2]_31 chr1:179675635-179675715 0.00014 24_[+2]_48 chr5:135223200-135223280 0.00014 50_[+2]_22 chr3:141179111-141179191 0.00014 28_[+2]_44 chr10:49866455-49866535 0.00014 37_[+2]_35 chr16:66929241-66929321 0.00017 29_[+2]_43 chrX:122967351-122967431 0.0002 41_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGGCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAKGGCR width=8 seqs=41 chr1:184774852-184774932 ( 41) AGATGGCA 1 chr4:139951947-139952027 ( 25) AGATGGCA 1 chr12:70273311-70273391 ( 28) AGATGGCA 1 chr20:5509681-5509761 ( 38) AGATGGCA 1 chr2:43086250-43086330 ( 33) AGATGGCA 1 chr19:39612832-39612912 ( 47) AGAGGGCA 1 chr16:77709783-77709863 ( 27) AGAGGGCA 1 chr1:228800283-228800363 ( 38) AGAGGGCA 1 chr6:3279939-3280019 ( 30) AGAGGGCA 1 chr1:43693078-43693158 ( 35) AGAGGGCA 1 chr8:10444963-10445043 ( 36) AGAGGGCA 1 chr8:145181496-145181576 ( 36) AGAGGGCA 1 chr15:42996752-42996832 ( 28) AGAGGGCA 1 chr7:131374022-131374102 ( 45) AGAGGGCA 1 chr17:53603895-53603975 ( 40) AGAGGGCA 1 chr8:37637498-37637578 ( 28) AGATGGCG 1 chr15:81567534-81567614 ( 35) AGATGGCG 1 chr12:7372399-7372479 ( 34) AGATGGCG 1 chr6:5144035-5144115 ( 7) AGATGGCG 1 chr19:40811391-40811471 ( 22) AGATGGCG 1 chr17:55208460-55208540 ( 52) AGATGGCG 1 chr5:87077102-87077182 ( 33) AGATGGCG 1 chr5:81608306-81608386 ( 28) AGAGGGCG 1 chr10:28952930-28953010 ( 32) AGAGGGCG 1 chr3:20381966-20382046 ( 30) AGAGGGCG 1 chr1:20244638-20244718 ( 40) AGAGGGCG 1 chr10:17649661-17649741 ( 24) AGGTGGCA 1 chr7:99510896-99510976 ( 41) AGGTGGCA 1 chr2:105986399-105986479 ( 33) AGGTGGCA 1 chr17:41654156-41654236 ( 30) AGGTGGCA 1 chr13:27559598-27559678 ( 12) AGATGTCA 1 chr9:126164352-126164432 ( 33) AGGGGGCA 1 chr7:111381949-111382029 ( 31) AGATGTCA 1 chr5:41856911-41856991 ( 27) AGAGGTCA 1 chr1:168409139-168409219 ( 42) AGGTGGCG 1 chr1:179675635-179675715 ( 25) AGGTGGCG 1 chr5:135223200-135223280 ( 51) AGAGGTCA 1 chr3:141179111-141179191 ( 29) AGAGGTCA 1 chr10:49866455-49866535 ( 38) AGGTGGCG 1 chr16:66929241-66929321 ( 30) AGATGTCG 1 chrX:122967351-122967431 ( 42) AGGTGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGGCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 8.5e-015 202 -1200 -1200 -1200 -1200 -1200 199 -1200 166 -1200 -20 -1200 -1200 -1200 80 119 -1200 -1200 199 -1200 -1200 -1200 172 -53 -1200 197 -1200 -1200 136 -1200 53 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGGCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 8.5e-015 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.780488 0.000000 0.219512 0.000000 0.000000 0.000000 0.439024 0.560976 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.829268 0.170732 0.000000 1.000000 0.000000 0.000000 0.634146 0.000000 0.365854 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGGCR MEME-2 regular expression -------------------------------------------------------------------------------- AG[AG][TG]GGC[AG] -------------------------------------------------------------------------------- Time 8.40 secs. ******************************************************************************** ******************************************************************************** MOTIF AYRCTGCM MEME-3 width = 8 sites = 124 llr = 761 E-value = 7.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AYRCTGCM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 524::::4 pos.-specific C :217::a5 probability G 2253:a:: matrix T 34::a::2 bits 2.0 *** 1.8 *** 1.6 *** 1.4 *** Relative 1.2 **** Entropy 1.0 **** (8.9 bits) 0.8 **** 0.6 * ****** 0.4 * ****** 0.2 * ****** 0.0 -------- Multilevel ATGCTGCC consensus TCAG A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYRCTGCM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:73372119-73372199 60 1.57e-05 TACTGCGGGA ATGCTGCC TCCTCCCCGC chr9:96975923-96976003 36 1.57e-05 AAACAGAGCC ATGCTGCC ATCTGGTGGT chr11:11809446-11809526 38 1.57e-05 CTCTGTTCTA ATGCTGCC ACCTGCTGGA chr7:137277170-137277250 29 1.57e-05 CAGCTGGTCA ATGCTGCC ACCATCTGTC chr1:165562322-165562402 37 1.57e-05 GACTTAGACA ATGCTGCC ACCTATCGAC chr9:19457566-19457646 31 3.12e-05 TCCTGGAGTA ATACTGCC ATCTTGTGGG chr17:56190531-56190611 69 4.64e-05 GAAGTGGGTA ATGCTGCA CAGG chr7:111375881-111375961 36 9.37e-05 CCCTGTACAG ACACTGCC ATCTGGTGGG chr5:40688387-40688467 39 9.37e-05 AAGTGGAGCA ACACTGCC ACCTGGAGGC chr15:58520079-58520159 12 9.37e-05 TAATTTAGGT ACACTGCC ACCAGGTGGA chr11:60655160-60655240 43 9.37e-05 TGCTGTGACT ACACTGCC CCCAGGTGAC chr1:36240409-36240489 38 9.37e-05 CCCTGGGGAA ACACTGCC ACTGTGTGGC chr3:48031585-48031665 37 9.37e-05 ACCCATGCCA ACACTGCC CTCTACTGGC chr6:170839058-170839138 31 9.37e-05 GGATGAGTCA ACACTGCC ATCTGGCGGC chr1:39301046-39301126 43 9.37e-05 AGATAATACA ACACTGCC ACCTAGAGGC chr1:158094903-158094983 38 1.57e-04 TGCTGATGTT TTGCTGCC ATCTGATGGC chr17:55208460-55208540 26 1.57e-04 ACAGCACAGA TTGCTGCC ACTGTGTCTT chr16:5006287-5006367 43 1.57e-04 GGGCTATCAT TTGCTGCC ACCTTGCGAC chr15:35370845-35370925 70 1.57e-04 CACAAGGCCC ACGCTGCA GGC chr11:65278374-65278454 32 1.57e-04 GACTTGGCTC TTGCTGCC ATCTAGTGAA chr16:84518375-84518455 40 1.57e-04 GCGTGGTGTG AGGCTGCC CTCTGCTGTT chr19:40645861-40645941 62 1.57e-04 GGATAGAAGC AGGCTGCC AGCATCATGA chr6:134237836-134237916 33 2.19e-04 ttcttgcact acactgca ctgccccCTA chr6:14067179-14067259 39 2.19e-04 TCATGGTACA TTACTGCC ACCTAGAGCT chr7:111370734-111370814 5 2.19e-04 CAGC ACACTGCA AGGCTAGTAA chr7:99510896-99510976 30 2.19e-04 GCAACAACAG AAACTGCC AGGAGGTGGC chr5:1167917-1167997 66 2.19e-04 CCTTGCGGAC AAACTGCC AGTGAGC chr2:46877814-46877894 57 2.19e-04 TAGTGGTGTG TTACTGCC TACGCTTCCT chr1:212541478-212541558 30 2.19e-04 aacttggctt agactgcc ctctagtgct chr11:61875611-61875691 39 2.19e-04 ATGCGAACAG TTACTGCC CCCTAGTGGA chr12:114418473-11441855 2 2.19e-04 A AAACTGCC TACAATTCTA chr9:100231038-100231118 28 2.51e-04 TGGCCACTTG ATGGTGCC AGAGAACCAG chr6:44047031-44047111 4 2.51e-04 TCT GTGCTGCC TTCACTTCAA chr1:31181085-31181165 43 2.51e-04 TCCTGGGCCA ATGGTGCC ATCCTGTGGC chr2:85779327-85779407 41 2.51e-04 CTCCTGGATG ATGGTGCC CCCTGCTGGA chr12:55466996-55467076 28 2.51e-04 TCATGGGGAT GTGCTGCC ACCTTGCGGT chr16:77709783-77709863 1 3.43e-04 . TTGCTGCA ATATGCACAC chr18:12934620-12934700 31 3.43e-04 ATGCGATGTC ATAGTGCC GCCTGCTGGC chr5:112331866-112331946 62 3.43e-04 GGTATAAAAG AAGCTGCA CGGCTTGACC chr17:34074631-34074711 18 3.43e-04 CCGTGGCCAA ATGCTGCT TCTGCGTGTG chr2:208610922-208611002 17 3.43e-04 AAGACCTGTC ATGCTGCT CTGCACAGCA chr1:45766068-45766148 69 4.19e-04 TCATATGAAA AAACTGCA GCCT chr19:56845038-56845118 54 4.19e-04 gtagtatgcc aaactgca caatagctca chr21:40890387-40890467 61 4.19e-04 TGCTATGGTG TCGCTGCC CCCGAGGTCC chr10:6443913-6443993 12 4.19e-04 GCAGGGACGG AAACTGCA GCTTTTTCAT chr5:34898512-34898592 46 4.82e-04 GACAAGGGGA ATCCTGCC ACCTTGTGGT chr3:141179111-141179191 18 4.82e-04 GGAGAGGAAA ATCCTGCC AGCAGAGGTC chr19:49291550-49291630 26 4.82e-04 CCACCAGATG GTGCTGCA GGCACACCAC chr15:67239193-67239273 5 4.82e-04 CTTC GTGCTGCA TTGTGCCTGA chr20:32717611-32717691 55 4.82e-04 agtggacagg atggtgca ttacatgaaa chr9:129703039-129703119 32 4.82e-04 CCACCAGGTG GTGCTGCA GCACCAGGCA chr6:143896633-143896713 45 4.82e-04 TGGACACTAG ATGGTGCA GTGGTCATAC chr21:33973464-33973544 54 4.82e-04 TCACTAGTGG TCACTGCC AGTCATCAGC chr19:51286976-51287056 19 5.45e-04 GGCTGAGAAA ATAGTGCA ACACCGCCAC chr12:49012378-49012458 59 5.45e-04 TTTGTCTGTG GTACTGCA GATTCTGGTG chr19:39612832-39612912 65 6.40e-04 gtcaatgaga acagtgcc cgggagtc chr6:5144035-5144115 36 6.40e-04 TGTGAGCCAC TGGCTGCC GGGTTCTCAA chr17:32078284-32078364 55 6.40e-04 CCATCTAGTG GCACTGCC AGGAATTGTT chr7:32519354-32519434 9 6.40e-04 CTAGCAAC TAGCTGCC TGCCTAGTTC chr2:216796124-216796204 66 7.18e-04 TTCAATCAGA ATCCTGCA AAGCCCC chr22:29225509-29225589 60 7.18e-04 CCAATTGTCT TCACTGCA CATGCGATGA chr19:50487024-50487104 14 8.45e-04 AGGGCACCTT AGGGTGCC AGGAAACGAG chr5:76164072-76164152 7 8.45e-04 ATTAGA GGGCTGCC AGGTGCAGTC chr1:85219370-85219450 10 8.45e-04 CGGGGGACA GCGCTGCA GAACCCAGCA chr6:35107814-35107894 23 8.45e-04 AATATGCCTT TTGGTGCC ATTCAGTTAA chr17:56525002-56525082 33 8.45e-04 acgtgggctt agggtgcc ctctactgct chr5:75552234-75552314 42 8.45e-04 TTGTGAACCC AGGGTGCC CTCAAGTGTT chr3:9012809-9012889 12 8.45e-04 GAGGCTGCTT ACCCTGCC TGCCATCTTA chr4:160124274-160124354 36 1.03e-03 TCCCATGGAG AGAGTGCC ACCTTGTGGA chr7:45175879-45175959 68 1.03e-03 atgtgagcaa ttgctgct tcttt chr3:15244340-15244420 6 1.03e-03 ACACC TAGCTGCA GTGCCACATA chr16:55499142-55499222 46 1.03e-03 CTGAGCCCTG AGGCTGCT TCTCCAAAAG chr11:113601771-11360185 46 1.03e-03 GGCTGAGGTA AGAGTGCC ATCTGGAGGA chr9:101026183-101026263 10 1.03e-03 TGGTAGGAT TAGCTGCA AGCAACAGGC chr5:87077102-87077182 46 1.03e-03 TGGCGTGAGA GCACTGCA TTGGACCTGC chr22:18558947-18559027 15 1.03e-03 ACTTTTAGCA AGGCTGCT TCTGTTAAGA chr9:123518254-123518334 10 1.03e-03 TCTCATTAC TAGCTGCA ACTCCCAAAT chr7:111381949-111382029 4 1.03e-03 AAA ACAGTGCA GTTTGGTAGA chr20:36162971-36163051 55 1.03e-03 GTAAAATGGG GAACTGCC TGATCTTACT chr11:116976834-11697691 31 1.03e-03 TCCTATCCCT TGGCTGCA GAGACACCTT chr3:182401508-182401588 3 1.03e-03 AC ACAGTGCA CGGTTTCAGT chr17:53603895-53603975 4 1.03e-03 aac acagTGCA GGCAGCTGCA chr4:89436946-89437026 29 1.03e-03 GAGTTAACCA AAAGTGCC ATCTAGTGGC chr5:14648822-14648902 39 1.12e-03 GCAAGGTCTT GTGGTGCC ACCTAGTGTC chr10:65479888-65479968 16 1.12e-03 AATTGAAATT TAACTGCA TGATAAAACT chr15:74927656-74927736 42 1.12e-03 CGAGACCATC AAACTGCT AAGGAGGGAG chr10:69615511-69615591 63 1.12e-03 AGGAATTATC AAACTGCT AGGTACAGTG chr10:45730797-45730877 72 1.12e-03 GCAAGTCGGA AAACTGCT C chr2:100877327-100877407 26 1.31e-03 TCCATTCCTG AGGGTGCA GTGACCCCAT chr5:135223200-135223280 22 1.31e-03 AAAGGCTGAT ACCCTGCA GAACCACCAC chr8:61309556-61309636 25 1.31e-03 TGTGGCAAAC TTGGTGCA AGTTCTCCAC chr6:39277851-39277931 37 1.31e-03 CAGTGATACC AGCCTGCC ACCTGGTGGC chr17:37363371-37363451 29 1.31e-03 GGACCAGAAG ATGGTGCT ACTCGCTCAC chr17:41654156-41654236 16 1.31e-03 CGGGAGTTGT GTGCTGCT GCCACAAGGT chr17:17259505-17259585 25 1.31e-03 CAGTGGTGTG GGGCTGCA ATTCACACAA chr6:136547516-136547596 51 1.43e-03 TAAATATGGA GAACTGCA GCCTGACGGC chr3:36742595-36742675 10 1.43e-03 ACGCACCCA GGACTGCA GGCCCTGTGT chr1:27204604-27204684 59 1.43e-03 AAAAATATAT GAACTGCA TCCAGCCAGT chr10:17649661-17649741 60 1.51e-03 TAGTATCATG ATCGTGCC ACTCACTAAA chr18:33864800-33864880 1 1.51e-03 . tcagtgcc tCAAAATAAT chr1:10488255-10488335 30 1.62e-03 GCTTCACGCT GTAGTGCA ACACTGACAT chr2:105986399-105986479 2 1.62e-03 A AGCCTGCA TGGTCATATG chr8:82692870-82692950 15 1.62e-03 CAAAATGTTG TCACTGCT GCCGCTCGTT chr3:184089477-184089557 4 1.62e-03 CAC TTCCTGCA CTTCCTCCTG chr14:23246818-23246898 50 1.62e-03 CCAGGCCTTG ATCCTGCT TCTGTTATCT chr1:20244638-20244718 62 1.62e-03 AGGACCACTT TTCCTGCA AAGGAGGTTT chr5:81461886-81461966 71 1.62e-03 ACAGTAATTG TTCCTGCA AG chr7:72866265-72866345 62 1.62e-03 ACATTCACAT GTAGTGCA CACAGTATGG chr12:51745849-51745929 49 1.62e-03 ATCTGGTGAC ATCCTGCT ACTGACAGTC chr14:96027392-96027472 35 1.73e-03 CCAGCAGATG GCGCTGCT TCTCCGGGAA chr10:28952930-28953010 10 1.73e-03 CCCAGCTGA GCGCTGCT TCCCTCTCAC chr1:60225272-60225352 23 1.73e-03 GGCGGCACAC ACGGTGCT TTAGCACCAT chr9:95553199-95553279 36 1.87e-03 acattatgca tgagtgcc acccagtggt chr7:75649582-75649662 58 1.87e-03 GCAGTTGGTG TGAGTGCC CCCAGCTTCT chr11:12303526-12303606 36 1.87e-03 AGCTCAACTT GTCCTGCA TCGCCACCTG chr7:131374022-131374102 23 1.87e-03 TATGCAGGAT GCACTGCT GGGATCTGTC chr17:70723992-70724072 44 1.98e-03 CATGATAGGC GAGGTGCC TGCCTGTCTT chr6:3279939-3280019 62 2.20e-03 TTAGAAGTCA GAGCTGCT TGATTTACGG chr1:165883571-165883651 29 2.20e-03 GTCTGATGTG TGCCTGCC ATCTAATGGT chr10:75289258-75289338 30 2.20e-03 CTTCCAGCAG AGGGTGCT GTTGTTATAG chr1:43243687-43243767 14 2.20e-03 TAAGATGTAC TCCCTGCA CTGACCACCA chr6:7615839-7615919 5 2.20e-03 CCCA AAGGTGCT CGCTAAGGGT chr21:39728082-39728162 66 2.46e-03 GGCCGTGGGA TTCGTGCC CATCTCC chr5:55566505-55566585 9 2.46e-03 CCATCCCT GAGGTGCA ATGCATGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYRCTGCM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:73372119-73372199 1.6e-05 59_[+3]_13 chr9:96975923-96976003 1.6e-05 35_[+3]_37 chr11:11809446-11809526 1.6e-05 37_[+3]_35 chr7:137277170-137277250 1.6e-05 28_[+3]_44 chr1:165562322-165562402 1.6e-05 36_[+3]_36 chr9:19457566-19457646 3.1e-05 30_[+3]_42 chr17:56190531-56190611 4.6e-05 68_[+3]_4 chr7:111375881-111375961 9.4e-05 35_[+3]_37 chr5:40688387-40688467 9.4e-05 38_[+3]_34 chr15:58520079-58520159 9.4e-05 11_[+3]_61 chr11:60655160-60655240 9.4e-05 42_[+3]_30 chr1:36240409-36240489 9.4e-05 37_[+3]_35 chr3:48031585-48031665 9.4e-05 36_[+3]_36 chr6:170839058-170839138 9.4e-05 30_[+3]_42 chr1:39301046-39301126 9.4e-05 42_[+3]_30 chr1:158094903-158094983 0.00016 37_[+3]_35 chr17:55208460-55208540 0.00016 25_[+3]_47 chr16:5006287-5006367 0.00016 42_[+3]_30 chr15:35370845-35370925 0.00016 69_[+3]_3 chr11:65278374-65278454 0.00016 31_[+3]_41 chr16:84518375-84518455 0.00016 39_[+3]_33 chr19:40645861-40645941 0.00016 61_[+3]_11 chr6:134237836-134237916 0.00022 32_[+3]_40 chr6:14067179-14067259 0.00022 38_[+3]_34 chr7:111370734-111370814 0.00022 4_[+3]_68 chr7:99510896-99510976 0.00022 29_[+3]_43 chr5:1167917-1167997 0.00022 65_[+3]_7 chr2:46877814-46877894 0.00022 56_[+3]_16 chr1:212541478-212541558 0.00022 29_[+3]_43 chr11:61875611-61875691 0.00022 38_[+3]_34 chr12:114418473-11441855 0.00022 1_[+3]_71 chr9:100231038-100231118 0.00025 27_[+3]_45 chr6:44047031-44047111 0.00025 3_[+3]_69 chr1:31181085-31181165 0.00025 42_[+3]_30 chr2:85779327-85779407 0.00025 40_[+3]_32 chr12:55466996-55467076 0.00025 27_[+3]_45 chr16:77709783-77709863 0.00034 [+3]_72 chr18:12934620-12934700 0.00034 30_[+3]_42 chr5:112331866-112331946 0.00034 61_[+3]_11 chr17:34074631-34074711 0.00034 17_[+3]_55 chr2:208610922-208611002 0.00034 16_[+3]_56 chr1:45766068-45766148 0.00042 68_[+3]_4 chr19:56845038-56845118 0.00042 53_[+3]_19 chr21:40890387-40890467 0.00042 60_[+3]_12 chr10:6443913-6443993 0.00042 11_[+3]_61 chr5:34898512-34898592 0.00048 45_[+3]_27 chr3:141179111-141179191 0.00048 17_[+3]_55 chr19:49291550-49291630 0.00048 25_[+3]_47 chr15:67239193-67239273 0.00048 4_[+3]_68 chr20:32717611-32717691 0.00048 54_[+3]_18 chr9:129703039-129703119 0.00048 31_[+3]_41 chr6:143896633-143896713 0.00048 44_[+3]_28 chr21:33973464-33973544 0.00048 53_[+3]_19 chr19:51286976-51287056 0.00054 18_[+3]_54 chr12:49012378-49012458 0.00054 58_[+3]_14 chr19:39612832-39612912 0.00064 64_[+3]_8 chr6:5144035-5144115 0.00064 35_[+3]_37 chr17:32078284-32078364 0.00064 54_[+3]_18 chr7:32519354-32519434 0.00064 8_[+3]_64 chr2:216796124-216796204 0.00072 65_[+3]_7 chr22:29225509-29225589 0.00072 59_[+3]_13 chr19:50487024-50487104 0.00085 13_[+3]_59 chr5:76164072-76164152 0.00085 6_[+3]_66 chr1:85219370-85219450 0.00085 9_[+3]_63 chr6:35107814-35107894 0.00085 22_[+3]_50 chr17:56525002-56525082 0.00085 32_[+3]_40 chr5:75552234-75552314 0.00085 41_[+3]_31 chr3:9012809-9012889 0.00085 11_[+3]_61 chr4:160124274-160124354 0.001 35_[+3]_37 chr7:45175879-45175959 0.001 67_[+3]_5 chr3:15244340-15244420 0.001 5_[+3]_67 chr16:55499142-55499222 0.001 45_[+3]_27 chr11:113601771-11360185 0.001 45_[+3]_27 chr9:101026183-101026263 0.001 9_[+3]_63 chr5:87077102-87077182 0.001 45_[+3]_27 chr22:18558947-18559027 0.001 14_[+3]_58 chr9:123518254-123518334 0.001 9_[+3]_63 chr7:111381949-111382029 0.001 3_[+3]_69 chr20:36162971-36163051 0.001 54_[+3]_18 chr11:116976834-11697691 0.001 30_[+3]_42 chr3:182401508-182401588 0.001 2_[+3]_70 chr17:53603895-53603975 0.001 3_[+3]_69 chr4:89436946-89437026 0.001 28_[+3]_44 chr5:14648822-14648902 0.0011 38_[+3]_34 chr10:65479888-65479968 0.0011 15_[+3]_57 chr15:74927656-74927736 0.0011 41_[+3]_31 chr10:69615511-69615591 0.0011 62_[+3]_10 chr10:45730797-45730877 0.0011 71_[+3]_1 chr2:100877327-100877407 0.0013 25_[+3]_47 chr5:135223200-135223280 0.0013 21_[+3]_51 chr8:61309556-61309636 0.0013 24_[+3]_48 chr6:39277851-39277931 0.0013 36_[+3]_36 chr17:37363371-37363451 0.0013 28_[+3]_44 chr17:41654156-41654236 0.0013 15_[+3]_57 chr17:17259505-17259585 0.0013 24_[+3]_48 chr6:136547516-136547596 0.0014 50_[+3]_22 chr3:36742595-36742675 0.0014 9_[+3]_63 chr1:27204604-27204684 0.0014 58_[+3]_14 chr10:17649661-17649741 0.0015 59_[+3]_13 chr18:33864800-33864880 0.0015 [+3]_72 chr1:10488255-10488335 0.0016 29_[+3]_43 chr2:105986399-105986479 0.0016 1_[+3]_71 chr8:82692870-82692950 0.0016 14_[+3]_58 chr3:184089477-184089557 0.0016 3_[+3]_69 chr14:23246818-23246898 0.0016 49_[+3]_23 chr1:20244638-20244718 0.0016 61_[+3]_11 chr5:81461886-81461966 0.0016 70_[+3]_2 chr7:72866265-72866345 0.0016 61_[+3]_11 chr12:51745849-51745929 0.0016 48_[+3]_24 chr14:96027392-96027472 0.0017 34_[+3]_38 chr10:28952930-28953010 0.0017 9_[+3]_63 chr1:60225272-60225352 0.0017 22_[+3]_50 chr9:95553199-95553279 0.0019 35_[+3]_37 chr7:75649582-75649662 0.0019 57_[+3]_15 chr11:12303526-12303606 0.0019 35_[+3]_37 chr7:131374022-131374102 0.0019 22_[+3]_50 chr17:70723992-70724072 0.002 43_[+3]_29 chr6:3279939-3280019 0.0022 61_[+3]_11 chr1:165883571-165883651 0.0022 28_[+3]_44 chr10:75289258-75289338 0.0022 29_[+3]_43 chr1:43243687-43243767 0.0022 13_[+3]_59 chr6:7615839-7615919 0.0022 4_[+3]_68 chr21:39728082-39728162 0.0025 65_[+3]_7 chr5:55566505-55566585 0.0025 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYRCTGCM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AYRCTGCM width=8 seqs=124 chr11:73372119-73372199 ( 60) ATGCTGCC 1 chr9:96975923-96976003 ( 36) ATGCTGCC 1 chr11:11809446-11809526 ( 38) ATGCTGCC 1 chr7:137277170-137277250 ( 29) ATGCTGCC 1 chr1:165562322-165562402 ( 37) ATGCTGCC 1 chr9:19457566-19457646 ( 31) ATACTGCC 1 chr17:56190531-56190611 ( 69) ATGCTGCA 1 chr7:111375881-111375961 ( 36) ACACTGCC 1 chr5:40688387-40688467 ( 39) ACACTGCC 1 chr15:58520079-58520159 ( 12) ACACTGCC 1 chr11:60655160-60655240 ( 43) ACACTGCC 1 chr1:36240409-36240489 ( 38) ACACTGCC 1 chr3:48031585-48031665 ( 37) ACACTGCC 1 chr6:170839058-170839138 ( 31) ACACTGCC 1 chr1:39301046-39301126 ( 43) ACACTGCC 1 chr1:158094903-158094983 ( 38) TTGCTGCC 1 chr17:55208460-55208540 ( 26) TTGCTGCC 1 chr16:5006287-5006367 ( 43) TTGCTGCC 1 chr15:35370845-35370925 ( 70) ACGCTGCA 1 chr11:65278374-65278454 ( 32) TTGCTGCC 1 chr16:84518375-84518455 ( 40) AGGCTGCC 1 chr19:40645861-40645941 ( 62) AGGCTGCC 1 chr6:134237836-134237916 ( 33) ACACTGCA 1 chr6:14067179-14067259 ( 39) TTACTGCC 1 chr7:111370734-111370814 ( 5) ACACTGCA 1 chr7:99510896-99510976 ( 30) AAACTGCC 1 chr5:1167917-1167997 ( 66) AAACTGCC 1 chr2:46877814-46877894 ( 57) TTACTGCC 1 chr1:212541478-212541558 ( 30) AGACTGCC 1 chr11:61875611-61875691 ( 39) TTACTGCC 1 chr12:114418473-11441855 ( 2) AAACTGCC 1 chr9:100231038-100231118 ( 28) ATGGTGCC 1 chr6:44047031-44047111 ( 4) GTGCTGCC 1 chr1:31181085-31181165 ( 43) ATGGTGCC 1 chr2:85779327-85779407 ( 41) ATGGTGCC 1 chr12:55466996-55467076 ( 28) GTGCTGCC 1 chr16:77709783-77709863 ( 1) TTGCTGCA 1 chr18:12934620-12934700 ( 31) ATAGTGCC 1 chr5:112331866-112331946 ( 62) AAGCTGCA 1 chr17:34074631-34074711 ( 18) ATGCTGCT 1 chr2:208610922-208611002 ( 17) ATGCTGCT 1 chr1:45766068-45766148 ( 69) AAACTGCA 1 chr19:56845038-56845118 ( 54) AAACTGCA 1 chr21:40890387-40890467 ( 61) TCGCTGCC 1 chr10:6443913-6443993 ( 12) AAACTGCA 1 chr5:34898512-34898592 ( 46) ATCCTGCC 1 chr3:141179111-141179191 ( 18) ATCCTGCC 1 chr19:49291550-49291630 ( 26) GTGCTGCA 1 chr15:67239193-67239273 ( 5) GTGCTGCA 1 chr20:32717611-32717691 ( 55) ATGGTGCA 1 chr9:129703039-129703119 ( 32) GTGCTGCA 1 chr6:143896633-143896713 ( 45) ATGGTGCA 1 chr21:33973464-33973544 ( 54) TCACTGCC 1 chr19:51286976-51287056 ( 19) ATAGTGCA 1 chr12:49012378-49012458 ( 59) GTACTGCA 1 chr19:39612832-39612912 ( 65) ACAGTGCC 1 chr6:5144035-5144115 ( 36) TGGCTGCC 1 chr17:32078284-32078364 ( 55) GCACTGCC 1 chr7:32519354-32519434 ( 9) TAGCTGCC 1 chr2:216796124-216796204 ( 66) ATCCTGCA 1 chr22:29225509-29225589 ( 60) TCACTGCA 1 chr19:50487024-50487104 ( 14) AGGGTGCC 1 chr5:76164072-76164152 ( 7) GGGCTGCC 1 chr1:85219370-85219450 ( 10) GCGCTGCA 1 chr6:35107814-35107894 ( 23) TTGGTGCC 1 chr17:56525002-56525082 ( 33) AGGGTGCC 1 chr5:75552234-75552314 ( 42) AGGGTGCC 1 chr3:9012809-9012889 ( 12) ACCCTGCC 1 chr4:160124274-160124354 ( 36) AGAGTGCC 1 chr7:45175879-45175959 ( 68) TTGCTGCT 1 chr3:15244340-15244420 ( 6) TAGCTGCA 1 chr16:55499142-55499222 ( 46) AGGCTGCT 1 chr11:113601771-11360185 ( 46) AGAGTGCC 1 chr9:101026183-101026263 ( 10) TAGCTGCA 1 chr5:87077102-87077182 ( 46) GCACTGCA 1 chr22:18558947-18559027 ( 15) AGGCTGCT 1 chr9:123518254-123518334 ( 10) TAGCTGCA 1 chr7:111381949-111382029 ( 4) ACAGTGCA 1 chr20:36162971-36163051 ( 55) GAACTGCC 1 chr11:116976834-11697691 ( 31) TGGCTGCA 1 chr3:182401508-182401588 ( 3) ACAGTGCA 1 chr17:53603895-53603975 ( 4) ACAGTGCA 1 chr4:89436946-89437026 ( 29) AAAGTGCC 1 chr5:14648822-14648902 ( 39) GTGGTGCC 1 chr10:65479888-65479968 ( 16) TAACTGCA 1 chr15:74927656-74927736 ( 42) AAACTGCT 1 chr10:69615511-69615591 ( 63) AAACTGCT 1 chr10:45730797-45730877 ( 72) AAACTGCT 1 chr2:100877327-100877407 ( 26) AGGGTGCA 1 chr5:135223200-135223280 ( 22) ACCCTGCA 1 chr8:61309556-61309636 ( 25) TTGGTGCA 1 chr6:39277851-39277931 ( 37) AGCCTGCC 1 chr17:37363371-37363451 ( 29) ATGGTGCT 1 chr17:41654156-41654236 ( 16) GTGCTGCT 1 chr17:17259505-17259585 ( 25) GGGCTGCA 1 chr6:136547516-136547596 ( 51) GAACTGCA 1 chr3:36742595-36742675 ( 10) GGACTGCA 1 chr1:27204604-27204684 ( 59) GAACTGCA 1 chr10:17649661-17649741 ( 60) ATCGTGCC 1 chr18:33864800-33864880 ( 1) TCAGTGCC 1 chr1:10488255-10488335 ( 30) GTAGTGCA 1 chr2:105986399-105986479 ( 2) AGCCTGCA 1 chr8:82692870-82692950 ( 15) TCACTGCT 1 chr3:184089477-184089557 ( 4) TTCCTGCA 1 chr14:23246818-23246898 ( 50) ATCCTGCT 1 chr1:20244638-20244718 ( 62) TTCCTGCA 1 chr5:81461886-81461966 ( 71) TTCCTGCA 1 chr7:72866265-72866345 ( 62) GTAGTGCA 1 chr12:51745849-51745929 ( 49) ATCCTGCT 1 chr14:96027392-96027472 ( 35) GCGCTGCT 1 chr10:28952930-28953010 ( 10) GCGCTGCT 1 chr1:60225272-60225352 ( 23) ACGGTGCT 1 chr9:95553199-95553279 ( 36) TGAGTGCC 1 chr7:75649582-75649662 ( 58) TGAGTGCC 1 chr11:12303526-12303606 ( 36) GTCCTGCA 1 chr7:131374022-131374102 ( 23) GCACTGCT 1 chr17:70723992-70724072 ( 44) GAGGTGCC 1 chr6:3279939-3280019 ( 62) GAGCTGCT 1 chr1:165883571-165883651 ( 29) TGCCTGCC 1 chr10:75289258-75289338 ( 30) AGGGTGCT 1 chr1:43243687-43243767 ( 14) TCCCTGCA 1 chr6:7615839-7615919 ( 5) AAGGTGCT 1 chr21:39728082-39728162 ( 66) TTCGTGCC 1 chr5:55566505-55566585 ( 9) GAGGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYRCTGCM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.49627 E= 7.3e-004 113 -1360 -27 2 -41 -8 -51 68 71 -89 86 -1360 -1360 151 12 -1360 -1360 -1360 -1360 202 -1360 -1360 199 -1360 -1360 197 -1360 -1360 52 92 -1360 -61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYRCTGCM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 7.3e-004 0.540323 0.000000 0.209677 0.250000 0.185484 0.241935 0.177419 0.395161 0.403226 0.137097 0.459677 0.000000 0.000000 0.725806 0.274194 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.354839 0.483871 0.000000 0.161290 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYRCTGCM MEME-3 regular expression -------------------------------------------------------------------------------- [ATG][TC][GA][CG]TGC[CA] -------------------------------------------------------------------------------- Time 11.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CASCAGVS MEME-4 width = 8 sites = 46 llr = 346 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASCAGVS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a2:a:32 pos.-specific C a:3a:133 probability G ::5::935 matrix T :::::::: bits 2.0 ** ** 1.8 ** ** 1.6 ** ** 1.4 ** *** Relative 1.2 ** *** Entropy 1.0 ** *** (10.9 bits) 0.8 ** *** 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGCG consensus C AC sequence GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGVS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:85219370-85219450 23 3.19e-05 CTGCAGAACC CAGCAGCG GAACAACAGC chr3:141179111-141179191 57 3.19e-05 AGCTGGGAGT CAGCAGCG GGACAGCATC chr6:35107814-35107894 42 3.19e-05 TTCAGTTAAC CAGCAGCG ACCTCATGTG chr2:26174027-26174107 27 3.19e-05 TCATGGCCAC CAGCAGAG GGAGCCACAC chr3:32551786-32551866 4 3.19e-05 CAC CAGCAGAG GGCCGCAAAG chr8:41400358-41400438 72 3.19e-05 CTTGGCGGAG CAGCAGAG G chr3:9012809-9012889 48 3.19e-05 CACATGAGGG CAGCAGAG TATCAGGCTG chr15:81567534-81567614 48 4.79e-05 TGGCGCTGTC CAGCAGGG AAATGACATC chr5:149016522-149016602 29 4.79e-05 CACCAGGTGG CAGCAGGG GATCAGCTAA chr17:43296421-43296501 21 4.79e-05 CGTCTACGGC CAGCAGGG GGTAGCACAG chr7:45194351-45194431 30 4.79e-05 AGTGTCTGTC CAGCAGGG GGAGCCAGGT chr10:30681578-30681658 35 8.01e-05 CTGCAGGTGG CACCAGAG CAACGTGGGA chr2:152095513-152095593 12 8.01e-05 AGTGTTTCCC CACCAGAG GAAAGAATTC chr6:131206641-131206721 71 8.01e-05 CCAGCTGAAA CACCAGAG TT chr11:4647583-4647663 70 8.01e-05 accttgtact caccagaG AAA chr17:70723992-70724072 19 1.29e-04 CACCAGATGG CAGCAGCC ACACACACAT chr5:55566505-55566585 25 1.29e-04 CAATGCATGA CAGCAGCC AGTGGGGGTC chr8:135697970-135698050 49 1.29e-04 TCCAGTGGCC CACCAGGG CACTACATCT chr2:208610922-208611002 30 1.29e-04 CTGCTCTGCA CAGCAGCC ACTGGGTGGC chr3:24040582-24040662 45 1.29e-04 GGCGCTCCAG CACCAGGG ATTGCATTGA chr1:227669385-227669465 26 1.29e-04 CTGTTCTGCA CAGCAGCC ACTGGGAGGC chr2:64558142-64558222 29 1.45e-04 TCAAGCTCCG CAGCAGGC ACTAGGTGGC chr7:22150048-22150128 67 1.76e-04 TTGGTCATGC CAGCAGCA CGCATC chr21:40510208-40510288 17 1.76e-04 ACTTCACCAG CAGCAGCA AAGAACCTTT chr7:137277170-137277250 13 1.76e-04 CAGCCATGCA CAGCAGCA GCTGGTCAAT chr2:216796124-216796204 38 2.23e-04 CAGAGTGAGT CAACAGCG GCATCTAGTG chr19:35203734-35203814 33 2.23e-04 atttctaagc caacagcg ccacctagtg chr6:134418414-134418494 14 2.71e-04 GCAGTGGGCT CACCAGAC TTTTCCAAGC chr9:129703039-129703119 48 2.71e-04 CAGCACCAGG CACCAGAC CCGAACCTGG chr9:126164352-126164432 65 2.88e-04 CTCATGTTCC CACCAGGC TATTGTGC chr10:69615511-69615591 9 3.19e-04 GACATAAT CACCAGCA CTACCTCATC chr19:40645861-40645941 38 3.19e-04 GACTAGATGG CACCAGAA TTCCAAGGAT chr19:33061262-33061342 69 3.35e-04 TTGCAGGAGA CACCAGGA CTCC chr1:43693078-43693158 56 3.83e-04 TGTACTCAGC CAACAGGC TATCCTTCTA chr9:101026183-101026263 20 3.83e-04 TAGCTGCAAG CAACAGGC TGTCAGAAAG chr1:223872049-223872129 70 3.83e-04 CTGTTTCCTC CAACAGGC CTC chr17:55208460-55208540 17 4.45e-04 TCAATGCACA CAGCACAG ATTGCTGCCA chr1:111003019-111003099 65 4.45e-04 GAAGTGGGGA CAGCACAG GGGAGCTG chr5:81461886-81461966 57 4.45e-04 CCTTACAGTA CAGCACAG TAATTGTTCC chr5:103514953-103515033 31 4.45e-04 atttcaaggt caacagca ccacctagtg chr7:64079610-64079690 38 4.45e-04 atttctaagc caacagca ccacctagtg chr8:61309556-61309636 5 4.77e-04 GGGG CAGCACGG TTTGTGGCAA chr13:51644327-51644407 65 4.77e-04 CCCCACATGC CAACAGGA CGCTGTGT chr1:165883571-165883651 60 4.77e-04 ATTCAGATTG CAACAGGA AGGTTGTTTT chr13:27559598-27559678 46 5.10e-04 TCTCTGTGAG CACCACCG CCCAGCTGAT chr10:49866455-49866535 50 5.59e-04 GTGGCGCCCT CAGCACAC TACTTGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGVS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:85219370-85219450 3.2e-05 22_[+4]_50 chr3:141179111-141179191 3.2e-05 56_[+4]_16 chr6:35107814-35107894 3.2e-05 41_[+4]_31 chr2:26174027-26174107 3.2e-05 26_[+4]_46 chr3:32551786-32551866 3.2e-05 3_[+4]_69 chr8:41400358-41400438 3.2e-05 71_[+4]_1 chr3:9012809-9012889 3.2e-05 47_[+4]_25 chr15:81567534-81567614 4.8e-05 47_[+4]_25 chr5:149016522-149016602 4.8e-05 28_[+4]_44 chr17:43296421-43296501 4.8e-05 20_[+4]_52 chr7:45194351-45194431 4.8e-05 29_[+4]_43 chr10:30681578-30681658 8e-05 34_[+4]_38 chr2:152095513-152095593 8e-05 11_[+4]_61 chr6:131206641-131206721 8e-05 70_[+4]_2 chr11:4647583-4647663 8e-05 69_[+4]_3 chr17:70723992-70724072 0.00013 18_[+4]_54 chr5:55566505-55566585 0.00013 24_[+4]_48 chr8:135697970-135698050 0.00013 48_[+4]_24 chr2:208610922-208611002 0.00013 29_[+4]_43 chr3:24040582-24040662 0.00013 44_[+4]_28 chr1:227669385-227669465 0.00013 25_[+4]_47 chr2:64558142-64558222 0.00014 28_[+4]_44 chr7:22150048-22150128 0.00018 66_[+4]_6 chr21:40510208-40510288 0.00018 16_[+4]_56 chr7:137277170-137277250 0.00018 12_[+4]_60 chr2:216796124-216796204 0.00022 37_[+4]_35 chr19:35203734-35203814 0.00022 32_[+4]_40 chr6:134418414-134418494 0.00027 13_[+4]_59 chr9:129703039-129703119 0.00027 47_[+4]_25 chr9:126164352-126164432 0.00029 64_[+4]_8 chr10:69615511-69615591 0.00032 8_[+4]_64 chr19:40645861-40645941 0.00032 37_[+4]_35 chr19:33061262-33061342 0.00034 68_[+4]_4 chr1:43693078-43693158 0.00038 55_[+4]_17 chr9:101026183-101026263 0.00038 19_[+4]_53 chr1:223872049-223872129 0.00038 69_[+4]_3 chr17:55208460-55208540 0.00045 16_[+4]_56 chr1:111003019-111003099 0.00045 64_[+4]_8 chr5:81461886-81461966 0.00045 56_[+4]_16 chr5:103514953-103515033 0.00045 30_[+4]_42 chr7:64079610-64079690 0.00045 37_[+4]_35 chr8:61309556-61309636 0.00048 4_[+4]_68 chr13:51644327-51644407 0.00048 64_[+4]_8 chr1:165883571-165883651 0.00048 59_[+4]_13 chr13:27559598-27559678 0.00051 45_[+4]_27 chr10:49866455-49866535 0.00056 49_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGVS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASCAGVS width=8 seqs=46 chr1:85219370-85219450 ( 23) CAGCAGCG 1 chr3:141179111-141179191 ( 57) CAGCAGCG 1 chr6:35107814-35107894 ( 42) CAGCAGCG 1 chr2:26174027-26174107 ( 27) CAGCAGAG 1 chr3:32551786-32551866 ( 4) CAGCAGAG 1 chr8:41400358-41400438 ( 72) CAGCAGAG 1 chr3:9012809-9012889 ( 48) CAGCAGAG 1 chr15:81567534-81567614 ( 48) CAGCAGGG 1 chr5:149016522-149016602 ( 29) CAGCAGGG 1 chr17:43296421-43296501 ( 21) CAGCAGGG 1 chr7:45194351-45194431 ( 30) CAGCAGGG 1 chr10:30681578-30681658 ( 35) CACCAGAG 1 chr2:152095513-152095593 ( 12) CACCAGAG 1 chr6:131206641-131206721 ( 71) CACCAGAG 1 chr11:4647583-4647663 ( 70) CACCAGAG 1 chr17:70723992-70724072 ( 19) CAGCAGCC 1 chr5:55566505-55566585 ( 25) CAGCAGCC 1 chr8:135697970-135698050 ( 49) CACCAGGG 1 chr2:208610922-208611002 ( 30) CAGCAGCC 1 chr3:24040582-24040662 ( 45) CACCAGGG 1 chr1:227669385-227669465 ( 26) CAGCAGCC 1 chr2:64558142-64558222 ( 29) CAGCAGGC 1 chr7:22150048-22150128 ( 67) CAGCAGCA 1 chr21:40510208-40510288 ( 17) CAGCAGCA 1 chr7:137277170-137277250 ( 13) CAGCAGCA 1 chr2:216796124-216796204 ( 38) CAACAGCG 1 chr19:35203734-35203814 ( 33) CAACAGCG 1 chr6:134418414-134418494 ( 14) CACCAGAC 1 chr9:129703039-129703119 ( 48) CACCAGAC 1 chr9:126164352-126164432 ( 65) CACCAGGC 1 chr10:69615511-69615591 ( 9) CACCAGCA 1 chr19:40645861-40645941 ( 38) CACCAGAA 1 chr19:33061262-33061342 ( 69) CACCAGGA 1 chr1:43693078-43693158 ( 56) CAACAGGC 1 chr9:101026183-101026263 ( 20) CAACAGGC 1 chr1:223872049-223872129 ( 70) CAACAGGC 1 chr17:55208460-55208540 ( 17) CAGCACAG 1 chr1:111003019-111003099 ( 65) CAGCACAG 1 chr5:81461886-81461966 ( 57) CAGCACAG 1 chr5:103514953-103515033 ( 31) CAACAGCA 1 chr7:64079610-64079690 ( 38) CAACAGCA 1 chr8:61309556-61309636 ( 5) CAGCACGG 1 chr13:51644327-51644407 ( 65) CAACAGGA 1 chr1:165883571-165883651 ( 60) CAACAGGA 1 chr13:27559598-27559678 ( 46) CACCACCG 1 chr10:49866455-49866535 ( 50) CAGCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGVS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.69444 E= 1.9e+004 -1217 197 -1217 -1217 202 -1217 -1217 -1217 -33 15 105 -1217 -1217 197 -1217 -1217 202 -1217 -1217 -1217 -1217 -97 178 -1217 40 45 37 -1217 -18 3 105 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGVS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.9e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.195652 0.282609 0.521739 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.869565 0.000000 0.326087 0.347826 0.326087 0.000000 0.217391 0.260870 0.521739 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCAGVS MEME-4 regular expression -------------------------------------------------------------------------------- CA[GC]CAG[CAG][GCA] -------------------------------------------------------------------------------- Time 14.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TATTAATA MEME-5 width = 8 sites = 2 llr = 22 E-value = 1.1e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTAATA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::aa:a pos.-specific C :::::::: probability G :::::::: matrix T a:aa::a: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATTAATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTAATA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:173046092-173046172 48 1.36e-05 GCCATTGCTG TATTAATA ATCCAAAACA chr10:45730797-45730877 2 1.36e-05 c tattAATA GTAATTTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTAATA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:173046092-173046172 1.4e-05 47_[+5]_25 chr10:45730797-45730877 1.4e-05 1_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTAATA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTAATA width=8 seqs=2 chr5:173046092-173046172 ( 48) TATTAATA 1 chr10:45730797-45730877 ( 2) TATTAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTAATA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.1e+006 -765 -765 -765 202 201 -765 -765 -765 -765 -765 -765 202 -765 -765 -765 202 201 -765 -765 -765 201 -765 -765 -765 -765 -765 -765 202 201 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTAATA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTAATA MEME-5 regular expression -------------------------------------------------------------------------------- TATTAATA -------------------------------------------------------------------------------- Time 18.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:114418473-11441855 2.88e-03 28_[+4(4.79e-05)]_44 chr3:9012809-9012889 3.75e-03 47_[+4(3.19e-05)]_25 chr1:165562322-165562402 4.04e-03 36_[+3(1.57e-05)]_36 chr16:19387066-19387146 2.40e-01 80 chr7:137277170-137277250 3.96e-04 28_[+3(1.57e-05)]_44 chr6:166519716-166519796 5.83e-01 80 chr19:40645861-40645941 1.70e-04 31_[+2(1.51e-05)]_41 chr21:33973464-33973544 8.51e-03 34_[+1(7.61e-05)]_38 chr16:84518375-84518455 9.79e-02 80 chr10:45730797-45730877 3.62e-06 1_[+5(1.36e-05)]_22_[+2(1.51e-05)]_\ 41 chr4:48548504-48548584 8.53e-02 80 chr7:64079610-64079690 1.12e-02 47_[+1(4.58e-05)]_25 chr10:13414049-13414129 9.01e-02 80 chr4:41283205-41283285 2.69e-02 35_[+2(7.73e-05)]_37 chr11:61875611-61875691 3.29e-02 80 chr6:29557358-29557438 3.52e-01 80 chr4:89436946-89437026 5.09e-02 36_[+1(7.61e-05)]_36 chr19:6048960-6049040 1.05e-01 80 chr20:49604399-49604479 4.12e-01 80 chr5:103514953-103515033 2.95e-02 40_[+1(4.58e-05)]_32 chr17:53603895-53603975 2.22e-05 39_[+2(3.06e-05)]_33 chr17:56190531-56190611 4.92e-03 68_[+3(4.64e-05)]_4 chr3:40622159-40622239 3.69e-01 80 chr12:51745849-51745929 3.57e-02 38_[+1(3.06e-05)]_34 chr7:72866265-72866345 1.41e-01 80 chr8:41400358-41400438 1.43e-02 71_[+4(3.19e-05)]_1 chr3:182401508-182401588 6.94e-01 80 chr8:103826982-103827062 1.19e-01 41_[+1(7.61e-05)]_31 chr5:173046092-173046172 6.22e-04 47_[+5(1.36e-05)]_25 chr21:40510208-40510288 5.63e-02 80 chr6:7615839-7615919 1.28e-01 80 chr5:81461886-81461966 9.63e-02 80 chr16:75233367-75233447 1.27e-03 33_[+1(7.61e-05)]_39 chr2:64558142-64558222 1.86e-03 80 chr3:4753213-4753293 1.03e-02 80 chr1:20244638-20244718 2.41e-04 39_[+2(6.19e-05)]_33 chr6:143896633-143896713 5.45e-02 80 chr1:227669385-227669465 1.34e-01 80 chr21:30117520-30117600 2.46e-01 80 chr9:129703039-129703119 1.55e-03 23_[+1(7.61e-05)]_49 chr3:155041022-155041102 3.73e-01 80 chr1:60225272-60225352 6.49e-02 80 chrX:122967351-122967431 1.80e-03 38_[+1(7.61e-05)]_23_[+1(7.61e-05)]_\ 3 chr11:65278374-65278454 9.81e-03 39_[+1(7.61e-05)]_33 chr11:116976834-11697691 5.54e-02 80 chr3:170132071-170132151 5.58e-01 80 chr3:24040582-24040662 9.15e-03 80 chr1:223872049-223872129 1.96e-02 80 chr1:212541478-212541558 4.18e-02 80 chr1:39301046-39301126 6.98e-03 42_[+3(9.37e-05)]_30 chr11:57017344-57017424 2.84e-01 80 chr11:4647583-4647663 1.25e-04 69_[+4(8.01e-05)]_3 chr2:43086250-43086330 1.52e-03 32_[+2(1.51e-05)]_40 chr5:10452964-10453044 2.78e-01 80 chr12:51815210-51815290 3.02e-01 80 chr20:32717611-32717691 3.47e-03 40_[+1(4.58e-05)]_32 chr15:35370845-35370925 4.18e-03 80 chr2:208610922-208611002 8.39e-03 80 chr12:55466996-55467076 1.79e-01 80 chr5:34474766-34474846 2.78e-01 80 chr17:34074631-34074711 8.41e-02 80 chr20:5509681-5509761 2.73e-02 37_[+2(1.51e-05)]_35 chr20:36162971-36163051 1.02e-01 80 chr7:134959389-134959469 2.24e-01 80 chr11:108519159-10851923 2.85e-01 80 chr10:49866455-49866535 4.07e-02 80 chr6:2738773-2738853 6.55e-01 80 chr12:70273311-70273391 4.74e-02 27_[+2(1.51e-05)]_45 chr16:5006287-5006367 2.71e-02 80 chr7:28060101-28060181 1.72e-01 80 chr10:69615511-69615591 1.56e-01 80 chr8:86209772-86209852 3.37e-02 23_[+1(7.61e-05)]_49 chr1:27204604-27204684 1.16e-01 80 chr7:111381949-111382029 5.97e-02 80 chr17:17259505-17259585 6.02e-01 80 chr6:131206641-131206721 3.45e-02 70_[+4(8.01e-05)]_2 chr2:46877814-46877894 1.82e-02 43_[+1(7.61e-05)]_29 chr3:32551786-32551866 3.38e-03 3_[+4(3.19e-05)]_69 chr9:123518254-123518334 2.89e-03 35_[+2(7.73e-05)]_37 chr7:131374022-131374102 2.05e-03 44_[+2(3.06e-05)]_28 chr3:20381966-20382046 4.25e-03 25_[+4(3.19e-05)]_47 chr6:138437170-138437250 9.07e-03 14_[+2(1.51e-05)]_58 chr17:26207183-26207263 1.43e-01 80 chr7:90057232-90057312 2.28e-01 36_[+1(7.61e-05)]_36 chr7:45194351-45194431 5.82e-02 29_[+4(4.79e-05)]_43 chr1:43243687-43243767 2.43e-01 80 chr15:42996752-42996832 9.60e-02 27_[+2(3.06e-05)]_45 chr22:18558947-18559027 2.89e-01 80 chr2:26174027-26174107 1.15e-02 26_[+4(3.19e-05)]_46 chr5:75552234-75552314 1.32e-02 80 chr16:75798198-75798278 2.54e-01 80 chr3:36742595-36742675 5.23e-02 80 chr1:111003019-111003099 3.41e-02 43_[+1(7.61e-05)]_29 chr11:4094075-4094155 7.39e-02 36_[+1(3.06e-05)]_36 chr2:152095513-152095593 2.59e-02 11_[+4(8.01e-05)]_61 chr8:135697970-135698050 4.34e-02 80 chr4:190825710-190825790 1.73e-02 80 chr17:41654156-41654236 5.72e-02 29_[+2(7.73e-05)]_43 chr11:12303526-12303606 1.62e-02 48_[+1(1.56e-05)]_24 chr8:145181496-145181576 7.44e-03 35_[+2(3.06e-05)]_37 chr5:87077102-87077182 1.56e-02 32_[+2(4.61e-05)]_40 chr17:56525002-56525082 9.28e-02 80 chr6:170839058-170839138 1.41e-01 30_[+3(9.37e-05)]_42 chr9:19457566-19457646 2.83e-03 30_[+3(3.12e-05)]_42 chr17:55208460-55208540 4.30e-04 51_[+2(4.61e-05)]_21 chr5:154022165-154022245 4.26e-01 80 chr10:75289258-75289338 2.90e-03 23_[+4(3.19e-05)]_49 chr1:165883571-165883651 9.80e-03 80 chr7:32519354-32519434 1.29e-01 80 chr7:26404880-26404960 4.10e-01 80 chr5:112331866-112331946 5.81e-02 80 chr3:129995185-129995265 5.08e-02 80 chr17:43296421-43296501 4.43e-02 20_[+4(4.79e-05)]_52 chr4:128322042-128322122 3.76e-02 46_[+1(4.58e-05)]_26 chr15:74927656-74927736 2.63e-01 80 chr7:139702221-139702301 2.62e-01 80 chr5:136965393-136965473 3.81e-02 80 chr19:40811391-40811471 1.84e-02 21_[+2(4.61e-05)]_51 chr19:33061262-33061342 2.90e-02 80 chr10:6443913-6443993 8.98e-02 80 chr10:45504221-45504301 5.38e-03 34_[+2(1.51e-05)]_38 chr17:32078284-32078364 1.44e-02 46_[+1(7.61e-05)]_26 chr6:35107814-35107894 9.24e-03 41_[+4(3.19e-05)]_31 chr3:48031585-48031665 1.82e-02 36_[+3(9.37e-05)]_36 chr4:103930424-103930504 6.93e-02 47_[+1(7.61e-05)]_25 chr4:139951947-139952027 7.85e-03 24_[+2(1.51e-05)]_48 chr13:51644327-51644407 1.37e-01 80 chr15:67239193-67239273 1.32e-01 80 chr2:69152575-69152655 1.80e-01 80 chr21:40890387-40890467 2.13e-03 80 chr10:17299849-17299929 8.19e-02 80 chr8:10444963-10445043 4.53e-02 35_[+2(3.06e-05)]_37 chr1:36240409-36240489 3.06e-01 37_[+3(9.37e-05)]_35 chr9:101026183-101026263 4.13e-02 80 chr22:29225509-29225589 2.91e-03 40_[+1(7.61e-05)]_32 chr12:49012378-49012458 4.07e-02 40_[+1(4.58e-05)]_32 chr1:180485118-180485198 6.73e-02 80 chr6:5144035-5144115 1.19e-03 6_[+2(4.61e-05)]_66 chr11:60655160-60655240 2.03e-02 42_[+3(9.37e-05)]_30 chr19:49291550-49291630 6.10e-03 80 chr2:109200523-109200603 3.23e-01 80 chr18:12934620-12934700 2.09e-01 80 chr6:136547516-136547596 2.67e-01 80 chr7:138423604-138423684 9.73e-03 50_[+1(1.56e-05)]_22 chr6:25071154-25071234 5.48e-01 80 chr12:7372399-7372479 4.48e-04 33_[+2(4.61e-05)]_39 chr10:28952930-28953010 3.30e-03 31_[+2(6.19e-05)]_41 chr7:22150048-22150128 7.37e-03 80 chr3:5347221-5347301 1.65e-02 36_[+2(3.06e-05)]_36 chr3:141179111-141179191 9.90e-05 24_[+4(3.19e-05)]_24_[+4(3.19e-05)]_\ 16 chr5:163931300-163931380 4.63e-02 80 chr11:113601771-11360185 2.09e-01 80 chr17:37363371-37363451 2.42e-02 80 chr6:17156492-17156572 1.16e-02 31_[+2(7.73e-05)]_41 chr14:23246818-23246898 2.65e-01 80 chr10:65479888-65479968 4.20e-02 41_[+1(7.61e-05)]_31 chr1:43693078-43693158 6.23e-03 34_[+2(3.06e-05)]_38 chr5:34898512-34898592 2.52e-02 80 chr21:37400888-37400968 8.09e-02 56_[+1(7.61e-05)]_16 chr10:33297780-33297860 8.23e-02 51_[+1(4.58e-05)]_21 chr13:96056678-96056758 5.22e-02 80 chr6:3279939-3280019 9.94e-03 29_[+2(3.06e-05)]_43 chr5:149016522-149016602 2.66e-04 19_[+1(7.61e-05)]_1_[+4(4.79e-05)]_\ 44 chr6:39277851-39277931 1.67e-03 44_[+1(1.56e-05)]_28 chr8:61309556-61309636 3.25e-03 40_[+1(4.58e-05)]_32 chr1:231493717-231493797 1.56e-01 80 chr5:55566505-55566585 8.83e-02 80 chr20:55125810-55125890 4.12e-03 45_[+2(1.51e-05)]_27 chr8:86985738-86985818 5.98e-02 52_[+1(7.61e-05)]_20 chr11:11809446-11809526 3.99e-03 37_[+3(1.57e-05)]_35 chr3:184089477-184089557 1.10e-01 80 chr5:135223200-135223280 3.14e-03 80 chr8:82692870-82692950 2.65e-01 80 chr19:56845038-56845118 2.17e-02 80 chr5:1167917-1167997 3.06e-01 80 chr1:11702622-11702702 1.05e-01 40_[+1(4.58e-05)]_32 chr2:105986399-105986479 1.21e-02 32_[+2(7.73e-05)]_40 chr4:13550694-13550774 3.96e-01 80 chr6:11655952-11656032 3.23e-03 32_[+1(7.61e-05)]_40 chr2:100877327-100877407 1.85e-01 80 chr4:38181428-38181508 2.64e-03 25_[+1(7.61e-05)]_47 chr15:81567534-81567614 4.32e-03 34_[+2(4.61e-05)]_5_[+4(4.79e-05)]_\ 25 chr18:33864800-33864880 6.45e-02 80 chr7:99510896-99510976 3.32e-03 40_[+2(7.73e-05)]_32 chr15:58520079-58520159 1.47e-03 11_[+3(9.37e-05)]_[+1(7.61e-05)]_53 chr5:40688387-40688467 2.71e-02 38_[+3(9.37e-05)]_34 chr15:51942268-51942348 3.84e-02 36_[+1(1.56e-05)]_36 chr1:10488255-10488335 1.03e-02 45_[+1(7.61e-05)]_27 chr5:81521524-81521604 1.29e-01 80 chr1:45766068-45766148 3.15e-02 80 chr8:37637498-37637578 8.89e-02 27_[+2(4.61e-05)]_45 chr16:55499142-55499222 1.88e-03 71_[+2(4.61e-05)]_1 chr7:75649582-75649662 1.55e-01 80 chr10:30681578-30681658 1.18e-03 28_[+2(7.73e-05)]_44 chr19:51286976-51287056 4.23e-02 80 chr1:85219370-85219450 1.52e-03 22_[+4(3.19e-05)]_50 chr5:76164072-76164152 9.32e-02 80 chr18:32586107-32586187 2.96e-03 29_[+2(1.51e-05)]_43 chr7:111375881-111375961 7.23e-03 35_[+3(9.37e-05)]_[+1(3.06e-05)]_29 chr5:81608306-81608386 3.84e-02 27_[+2(6.19e-05)]_45 chr4:4490265-4490345 3.43e-02 80 chr18:6886394-6886474 1.57e-01 80 chr9:96975923-96976003 1.54e-03 35_[+3(1.57e-05)]_[+1(3.06e-05)]_29 chr1:11097800-11097880 4.68e-02 80 chr17:61502897-61502977 1.96e-02 80 chr1:55257728-55257808 2.40e-02 34_[+1(1.56e-05)]_38 chr9:125572749-125572829 3.52e-01 80 chr7:111370734-111370814 7.67e-03 80 chr1:236267081-236267161 7.06e-02 28_[+2(4.61e-05)]_44 chr10:17649661-17649741 4.17e-02 23_[+2(7.73e-05)]_49 chr2:85779327-85779407 7.57e-02 80 chr1:201941896-201941976 7.19e-01 80 chr3:15244340-15244420 7.66e-03 80 chr1:31181085-31181165 1.12e-01 80 chr6:3732906-3732986 2.00e-01 53_[+1(7.61e-05)]_19 chr19:6022424-6022504 4.14e-01 80 chr1:181135859-181135939 1.61e-01 80 chr5:14648822-14648902 4.98e-02 46_[+1(4.58e-05)]_26 chr11:73372119-73372199 5.34e-03 59_[+3(1.57e-05)]_13 chr1:179675635-179675715 2.93e-02 80 chr6:44047031-44047111 3.68e-02 80 chr9:126164352-126164432 3.75e-03 80 chr1:168409139-168409219 2.07e-01 80 chr1:14287015-14287095 7.85e-02 80 chr21:47240623-47240703 4.07e-01 80 chr17:70723992-70724072 2.53e-04 12_[+2(1.51e-05)]_60 chr1:228800283-228800363 5.48e-02 37_[+2(3.06e-05)]_35 chr14:96027392-96027472 5.38e-03 29_[+2(4.61e-05)]_43 chr1:158094903-158094983 3.85e-02 80 chr19:35203734-35203814 2.07e-03 42_[+1(4.58e-05)]_30 chr1:184774852-184774932 5.67e-03 40_[+2(1.51e-05)]_32 chr9:95553199-95553279 6.18e-01 80 chr5:41856911-41856991 8.86e-03 32_[+4(8.01e-05)]_40 chr6:14067179-14067259 6.18e-02 80 chr7:45175879-45175959 1.44e-01 80 chr6:134418414-134418494 1.59e-02 80 chr7:2904798-2904878 1.06e-02 36_[+1(7.61e-05)]_36 chr16:77709783-77709863 2.16e-04 26_[+2(3.06e-05)]_46 chr16:66929241-66929321 6.84e-03 80 chr4:160124274-160124354 6.65e-02 80 chr5:125874982-125875062 9.12e-02 80 chr19:50487024-50487104 8.66e-02 80 chr21:39728082-39728162 2.42e-01 80 chr6:134237836-134237916 8.40e-02 80 chr13:27559598-27559678 1.18e-02 80 chr9:100231038-100231118 9.49e-02 80 chr2:216796124-216796204 4.50e-03 47_[+1(7.61e-05)]_25 chr3:150945653-150945733 2.00e-02 42_[+2(7.73e-05)]_30 chr4:68193127-68193207 3.37e-01 80 chr19:39612832-39612912 6.46e-04 46_[+2(3.06e-05)]_26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************