******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PTTG1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:48977665-48977745 1.0000 80 chr1:84836654-84836734 1.0000 80 chr6:135645820-135645900 1.0000 80 chr2:11835916-11835996 1.0000 80 chr12:125548239-12554831 1.0000 80 chr18:29390463-29390543 1.0000 80 chr5:29194296-29194376 1.0000 80 chr10:50751834-50751914 1.0000 80 chr7:133776316-133776396 1.0000 80 chr1:51687397-51687477 1.0000 80 chr3:5769927-5770007 1.0000 80 chr15:68270176-68270256 1.0000 80 chr4:40580111-40580191 1.0000 80 chr16:8165956-8166036 1.0000 80 chr1:84847892-84847972 1.0000 80 chr9:126903376-126903456 1.0000 80 chr9:128004805-128004885 1.0000 80 chr2:113365409-113365489 1.0000 80 chr17:56991393-56991473 1.0000 80 chr1:236478925-236479005 1.0000 80 chr10:50758159-50758239 1.0000 80 chr7:36315633-36315713 1.0000 80 chr1:9681283-9681363 1.0000 80 chr3:15150613-15150693 1.0000 80 chr17:55051586-55051666 1.0000 80 chr11:33216181-33216261 1.0000 80 chr14:94556038-94556118 1.0000 80 chr18:8934031-8934111 1.0000 80 chr9:74569740-74569820 1.0000 80 chr2:216482990-216483070 1.0000 80 chr15:75433016-75433096 1.0000 80 chr12:111257117-11125719 1.0000 80 chr16:53464459-53464539 1.0000 80 chr2:69961383-69961463 1.0000 80 chr10:60038813-60038893 1.0000 80 chr17:65280392-65280472 1.0000 80 chr2:202440857-202440937 1.0000 80 chr9:139675613-139675693 1.0000 80 chr7:6626181-6626261 1.0000 80 chr17:40809994-40810074 1.0000 80 chr3:172255707-172255787 1.0000 80 chr17:56992921-56993001 1.0000 80 chr13:96010268-96010348 1.0000 80 chr12:9184954-9185034 1.0000 80 chr20:23116255-23116335 1.0000 80 chr12:102261590-10226167 1.0000 80 chr3:21557064-21557144 1.0000 80 chr1:65996504-65996584 1.0000 80 chr19:58321704-58321784 1.0000 80 chr16:20897788-20897868 1.0000 80 chr1:220448924-220449004 1.0000 80 chr3:171695321-171695401 1.0000 80 chr5:179946353-179946433 1.0000 80 chr10:95043327-95043407 1.0000 80 chr12:31891668-31891748 1.0000 80 chr7:137944534-137944614 1.0000 80 chr9:79052070-79052150 1.0000 80 chr6:110896196-110896276 1.0000 80 chr19:51252900-51252980 1.0000 80 chr7:45028883-45028963 1.0000 80 chr14:76686377-76686457 1.0000 80 chr1:55698993-55699073 1.0000 80 chr12:131340817-13134089 1.0000 80 chr19:30134620-30134700 1.0000 80 chr12:47620158-47620238 1.0000 80 chr6:14394400-14394480 1.0000 80 chr1:16843643-16843723 1.0000 80 chr6:150591967-150592047 1.0000 80 chr14:103609979-10361005 1.0000 80 chr11:62196832-62196912 1.0000 80 chr9:97114777-97114857 1.0000 80 chr17:73154791-73154871 1.0000 80 chr22:21447696-21447776 1.0000 80 chr4:37672865-37672945 1.0000 80 chr20:21637450-21637530 1.0000 80 chr7:25967410-25967490 1.0000 80 chr12:125101110-12510119 1.0000 80 chr12:91681675-91681755 1.0000 80 chr17:13379037-13379117 1.0000 80 chr8:130091053-130091133 1.0000 80 chrX:135971590-135971670 1.0000 80 chr5:78205238-78205318 1.0000 80 chr7:100795401-100795481 1.0000 80 chr1:65690982-65691062 1.0000 80 chr22:31145417-31145497 1.0000 80 chr16:53453063-53453143 1.0000 80 chr7:143109580-143109660 1.0000 80 chr6:13837413-13837493 1.0000 80 chr2:112721274-112721354 1.0000 80 chr6:107305345-107305425 1.0000 80 chr6:158130759-158130839 1.0000 80 chr12:32207633-32207713 1.0000 80 chr1:173391895-173391975 1.0000 80 chr15:68344414-68344494 1.0000 80 chr15:49481334-49481414 1.0000 80 chr3:141371306-141371386 1.0000 80 chr9:79041103-79041183 1.0000 80 chr1:68388904-68388984 1.0000 80 chr12:48245509-48245589 1.0000 80 chr5:131076380-131076460 1.0000 80 chr8:125283364-125283444 1.0000 80 chr2:189192415-189192495 1.0000 80 chr6:2926853-2926933 1.0000 80 chr1:150681687-150681767 1.0000 80 chr3:156486320-156486400 1.0000 80 chr16:31033602-31033682 1.0000 80 chr1:38026185-38026265 1.0000 80 chr1:8998638-8998718 1.0000 80 chr20:5726872-5726952 1.0000 80 chr14:65465343-65465423 1.0000 80 chr3:58692272-58692352 1.0000 80 chr10:76194540-76194620 1.0000 80 chr1:203748147-203748227 1.0000 80 chr7:4933707-4933787 1.0000 80 chr19:49396050-49396130 1.0000 80 chr1:67381028-67381108 1.0000 80 chr1:185310710-185310790 1.0000 80 chr15:34669241-34669321 1.0000 80 chr12:127642067-12764214 1.0000 80 chr2:48346168-48346248 1.0000 80 chr7:106485212-106485292 1.0000 80 chr3:15445631-15445711 1.0000 80 chr9:97164515-97164595 1.0000 80 chr3:47528961-47529041 1.0000 80 chr3:119358492-119358572 1.0000 80 chr1:45910352-45910432 1.0000 80 chr16:46685333-46685413 1.0000 80 chr6:26491956-26492036 1.0000 80 chr1:116820561-116820641 1.0000 80 chr17:77066511-77066591 1.0000 80 chr16:10422360-10422440 1.0000 80 chr18:9021623-9021703 1.0000 80 chr8:30060517-30060597 1.0000 80 chr1:36482425-36482505 1.0000 80 chr6:161632035-161632115 1.0000 80 chr1:100001489-100001569 1.0000 80 chr11:67278447-67278527 1.0000 80 chr1:26810573-26810653 1.0000 80 chr12:7165621-7165701 1.0000 80 chr1:17219547-17219627 1.0000 80 chr9:38252707-38252787 1.0000 80 chr3:38369929-38370009 1.0000 80 chr1:95078531-95078611 1.0000 80 chr19:21803932-21804012 1.0000 80 chr11:73239205-73239285 1.0000 80 chr1:52224150-52224230 1.0000 80 chr11:116821062-11682114 1.0000 80 chr1:25576892-25576972 1.0000 80 chr5:71579345-71579425 1.0000 80 chr7:77104215-77104295 1.0000 80 chr6:15198202-15198282 1.0000 80 chr22:28985269-28985349 1.0000 80 chr13:29132793-29132873 1.0000 80 chr18:47956115-47956195 1.0000 80 chr10:76006421-76006501 1.0000 80 chr6:27743093-27743173 1.0000 80 chr6:49690217-49690297 1.0000 80 chr16:28550728-28550808 1.0000 80 chr1:28691465-28691545 1.0000 80 chr17:53421387-53421467 1.0000 80 chr7:77507965-77508045 1.0000 80 chr6:36852534-36852614 1.0000 80 chr5:85868798-85868878 1.0000 80 chr11:5388950-5389030 1.0000 80 chr8:102921088-102921168 1.0000 80 chr21:30604583-30604663 1.0000 80 chr7:156413063-156413143 1.0000 80 chr12:68594672-68594752 1.0000 80 chr19:43949708-43949788 1.0000 80 chr10:105287487-10528756 1.0000 80 chr4:8244707-8244787 1.0000 80 chr18:9874859-9874939 1.0000 80 chr10:6047307-6047387 1.0000 80 chr12:92230664-92230744 1.0000 80 chr11:76522448-76522528 1.0000 80 chr7:25883224-25883304 1.0000 80 chr6:134343853-134343933 1.0000 80 chr15:69241628-69241708 1.0000 80 chr21:45633730-45633810 1.0000 80 chr5:180603741-180603821 1.0000 80 chr3:9686068-9686148 1.0000 80 chr15:68316163-68316243 1.0000 80 chr5:87547388-87547468 1.0000 80 chr1:11748755-11748835 1.0000 80 chr1:113360367-113360447 1.0000 80 chr14:32490178-32490258 1.0000 80 chr1:67865463-67865543 1.0000 80 chr18:46488814-46488894 1.0000 80 chr5:77074543-77074623 1.0000 80 chrX:41249274-41249354 1.0000 80 chr1:157298070-157298150 1.0000 80 chr7:8362412-8362492 1.0000 80 chr2:104086443-104086523 1.0000 80 chr12:25429731-25429811 1.0000 80 chr18:53615330-53615410 1.0000 80 chr19:48753715-48753795 1.0000 80 chr14:23678541-23678621 1.0000 80 chr6:15210526-15210606 1.0000 80 chr5:107757591-107757671 1.0000 80 chr17:62926158-62926238 1.0000 80 chr2:112337260-112337340 1.0000 80 chr12:11774855-11774935 1.0000 80 chr2:236352363-236352443 1.0000 80 chr12:46870099-46870179 1.0000 80 chr12:103066499-10306657 1.0000 80 chr6:110176790-110176870 1.0000 80 chr7:13889229-13889309 1.0000 80 chr16:29781023-29781103 1.0000 80 chr5:18792334-18792414 1.0000 80 chr3:32098176-32098256 1.0000 80 chr6:15107849-15107929 1.0000 80 chr12:58039004-58039084 1.0000 80 chr8:123842165-123842245 1.0000 80 chr4:48081105-48081185 1.0000 80 chr17:25435137-25435217 1.0000 80 chr19:2954197-2954277 1.0000 80 chr3:155579748-155579828 1.0000 80 chr4:138889154-138889234 1.0000 80 chr15:29250479-29250559 1.0000 80 chr10:12486205-12486285 1.0000 80 chr1:46409043-46409123 1.0000 80 chr21:44356601-44356681 1.0000 80 chr3:24538687-24538767 1.0000 80 chr11:33316487-33316567 1.0000 80 chr9:99748092-99748172 1.0000 80 chr9:102796255-102796335 1.0000 80 chr7:23634925-23635005 1.0000 80 chr1:142886554-142886634 1.0000 80 chr15:40196483-40196563 1.0000 80 chr11:64252211-64252291 1.0000 80 chr1:228312993-228313073 1.0000 80 chr19:46081292-46081372 1.0000 80 chr7:92314965-92315045 1.0000 80 chr8:42650487-42650567 1.0000 80 chr6:30805795-30805875 1.0000 80 chr6:164361905-164361985 1.0000 80 chr6:26042374-26042454 1.0000 80 chr3:101350885-101350965 1.0000 80 chr9:139684121-139684201 1.0000 80 chr2:20701836-20701916 1.0000 80 chr21:46265384-46265464 1.0000 80 chr19:21880691-21880771 1.0000 80 chr5:77074343-77074423 1.0000 80 chr7:156716277-156716357 1.0000 80 chr10:17045897-17045977 1.0000 80 chr7:30767734-30767814 1.0000 80 chr3:195784686-195784766 1.0000 80 chr12:31468362-31468442 1.0000 80 chr2:223688027-223688107 1.0000 80 chr11:67778907-67778987 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PTTG1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PTTG1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.217 G 0.218 T 0.279 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.217 G 0.218 T 0.279 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ARATGGAG MEME-1 width = 8 sites = 110 llr = 1059 E-value = 6.3e-162 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARATGGAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a4a:::9: pos.-specific C :::::::: probability G :6::aa:a matrix T :::a:::: bits 2.2 ** 2.0 ** * 1.8 * **** * 1.5 * **** * Relative 1.3 * ****** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGGAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:223688027-223688107 38 1.47e-05 tgagcatcca agatggag ttacttttgc chr7:156716277-156716357 16 1.47e-05 tctttttcta agatggag tcacttatgt chr21:46265384-46265464 35 1.47e-05 accctactca agatggag tcactctggt chr1:228312993-228313073 53 1.47e-05 ctagcatcca agatggag gtgctttagc chr11:64252211-64252291 73 1.47e-05 cccctactca agatggag chr15:40196483-40196563 26 1.47e-05 cttctgttca agatggag ttgctctggt chr4:138889154-138889234 21 1.47e-05 gttagaagca agatggag tcagttaggt chr17:25435137-25435217 36 1.47e-05 gttaaaggca agatggag taggttaggt chr6:110176790-110176870 34 1.47e-05 tatgaaccca agatggag tcacctgtgc chr12:46870099-46870179 58 1.47e-05 ctcctattca agatggag ttgctctggc chr5:107757591-107757671 27 1.47e-05 ccccgattca agatggag tcactctggt chr2:104086443-104086523 25 1.47e-05 cacttattca agatggag ttgctctggt chr1:157298070-157298150 51 1.47e-05 attagaagca agatggag tcagttaggt chr18:46488814-46488894 10 1.47e-05 ccctattca agatggag ttgctctggt chr15:68316163-68316243 31 1.47e-05 gctagaagca agatggag tcagccatgc chr3:9686068-9686148 15 1.47e-05 AAAagaagca agatggag ttggttaggt chr5:180603741-180603821 33 1.47e-05 cccttataca agatggag tcactctggt chr10:105287487-10528756 4 1.47e-05 tga agatggag tggctctggt chr7:156413063-156413143 11 1.47e-05 ctcctgttta agatggag ttgctctggt chr21:30604583-30604663 36 1.47e-05 gttagaagga agatggag ttggttaggt chr11:5388950-5389030 20 1.47e-05 ctcctattta agatggag ttgctctggt chr7:77507965-77508045 46 1.47e-05 gttagaagca agatggag tcagctatgt chr6:49690217-49690297 57 1.47e-05 cccttattta agatggag tttctctggt chr6:15198202-15198282 25 1.47e-05 ctcctattca agatggag ttgctctggt chr11:67278447-67278527 57 1.47e-05 ctcctattca agatggag ttgctctggt chr1:100001489-100001569 41 1.47e-05 ctcctattca agatggag ttgctctagt chr6:161632035-161632115 60 1.47e-05 gtaaaaagca agatggag tcagttacgt chr8:30060517-30060597 37 1.47e-05 tctttttcta agatggag ttagttatgt chr16:46685333-46685413 61 1.47e-05 gttagaagca agatggag tcagttaggt chr3:119358492-119358572 17 1.47e-05 ttttttttta agatggag tcttgctctg chr3:47528961-47529041 19 1.47e-05 ttagcatcca agatggag tcacttttgt chr7:106485212-106485292 38 1.47e-05 gttagaacca agatggag ttggttatgt chr1:67381028-67381108 34 1.47e-05 gttagaagca agatggag tcagttaggt chr7:4933707-4933787 27 1.47e-05 cccctattca agatggag tcactctggt chr1:8998638-8998718 16 1.47e-05 ataataacca agatggag tcactctggc chr6:2926853-2926933 13 1.47e-05 gtaccgatca agatggag tttcttatgc chr9:79041103-79041183 52 1.47e-05 gttaaaagga agatggag ttggtcaggt chr6:107305345-107305425 27 1.47e-05 ttagcatcca agatggag ttcctttagc chr22:31145417-31145497 16 1.47e-05 gctttattca agatggag tcactctggt chr12:125101110-12510119 2 1.47e-05 a agatggag ttgctctggt chr7:25967410-25967490 19 1.47e-05 ccatgatcca agatggag gcaattatgt chr9:97114777-97114857 47 1.47e-05 ctcctattca agatggag ttgctctggc chr11:62196832-62196912 21 1.47e-05 gttagaagga agatggag tcggttaggt chr1:16843643-16843723 22 1.47e-05 gctagaacca agatggag tcagccatgt chr12:47620158-47620238 14 1.47e-05 TCTCtttttg agatggag tgagtctcgc chr7:45028883-45028963 26 1.47e-05 gttagaagca agatggag ttggttcggt chr10:95043327-95043407 15 1.47e-05 cccctattca agatggag ttgctctggt chr1:65996504-65996584 14 1.47e-05 cccctactca agatggag ttgctctggt chr13:96010268-96010348 32 1.47e-05 gttagaagca agatggag ttggttaggt chr12:111257117-11125719 27 1.47e-05 cccctattca agatggag ttgctctggt chr9:74569740-74569820 30 1.47e-05 ctcctattca agatggag ttgctctggt chr18:8934031-8934111 34 1.47e-05 gccagcagca agatggag tcagccatgc chr14:94556038-94556118 4 1.47e-05 tca agatggag tcactctggt chr17:55051586-55051666 10 1.47e-05 ctttattca agatggag tcactctggt chr1:9681283-9681363 35 1.47e-05 ctcctattca agatggag ttgctctggt chr10:50758159-50758239 24 1.47e-05 accctataca agatggag ttgctctggt chr17:56991393-56991473 43 1.47e-05 gttaaaagca agatggag tcagttaggt chr3:5769927-5770007 4 1.47e-05 gca agatggag tcggttaggt chr1:51687397-51687477 47 1.47e-05 ccttcaagca agatggag ttggttaggt chr7:133776316-133776396 38 1.47e-05 cccttattca agatggag ttgctctggt chr3:195784686-195784766 45 3.41e-05 gtcaaaatca aaatggag tcactagtgt chr19:21880691-21880771 3 3.41e-05 ta aaatggag tctgtccggc chr2:20701836-20701916 50 3.41e-05 gtctttttca aaatggag tcttttatgt chr9:139684121-139684201 38 3.41e-05 gtacagatca aaatggag tttcttatgt chr8:42650487-42650567 44 3.41e-05 gacgtaacca aaatggag tcactcatgc chr7:92314965-92315045 10 3.41e-05 taaaagtta aaatggag tcacttatgc chr1:142886554-142886634 35 3.41e-05 aaccaaacca aaatggag tcactcatgc chr7:23634925-23635005 56 3.41e-05 gtcagaatca aaatggag tcacttgtgt chr11:33316487-33316567 39 3.41e-05 TCATGTCTCA AAATGGAG TCACTCATGT chr12:103066499-10306657 59 3.41e-05 gttagaagca aaatggag tcagttaagt chr7:8362412-8362492 56 3.41e-05 agaccaacca aaatggag tttctcatgc chr6:134343853-134343933 71 3.41e-05 aacacaaaca aaatggag tc chr19:43949708-43949788 41 3.41e-05 gaccaaacca aaatggag tcactcgtgc chr8:102921088-102921168 37 3.41e-05 gaccaaatca aaatggag tcacttgtgc chr6:36852534-36852614 25 3.41e-05 aaccaaacta aaatggag tcactcatgc chr16:28550728-28550808 46 3.41e-05 tttttttttg aaatggag tctctgtcgc chr6:27743093-27743173 41 3.41e-05 gtacagaaca aaatggag tctcctatgt chr18:47956115-47956195 10 3.41e-05 accaaacca aaatggag tcactcatgc chr22:28985269-28985349 18 3.41e-05 ggccaaacag aaatggag tcactcatgt chr11:116821062-11682114 37 3.41e-05 ctaaatatca aaatggag tcactcatgc chr19:21803932-21804012 38 3.41e-05 gtctttttca aaatggag tcccttatgt chr6:26491956-26492036 58 3.41e-05 gaagaagcca aaatggag tttgtctggc chr3:15445631-15445711 40 3.41e-05 cccctattca aaatggag ttactctggt chr19:49396050-49396130 27 3.41e-05 gtacagatca aaatggag tttcttatgt chr1:38026185-38026265 8 3.41e-05 caggtca aaatggag tttcttgtgt chr2:112721274-112721354 39 3.41e-05 gtacagaaca aaatggag tctcctatgt chr12:91681675-91681755 9 3.41e-05 ATTTCTCA AAATGGAG TCACTTATGA chr6:110896196-110896276 26 3.41e-05 gaccaaacca aaatggag tcactcatgc chr16:20897788-20897868 34 3.41e-05 ctaaaaatca aaatggag tcattcatgc chr12:102261590-10226167 26 3.41e-05 gttggaagca aaatggag ttggttaggt chr9:139675613-139675693 66 3.41e-05 atacagatca aaatggag tttctta chr1:84847892-84847972 38 3.41e-05 gaccagacca aaatggag tcacttatgc chr1:84836654-84836734 41 3.41e-05 gtcagaatca aaatggag tcacttgtgt chr5:77074543-77074623 62 5.97e-05 accgaaacca agatggtg acaaaagtgt chr10:60038813-60038893 72 5.97e-05 tgtgtgacta agatggtg a chr2:216482990-216483070 26 7.90e-05 cccctgttca agatggaa gtgctctggt chr15:68270176-68270256 29 7.90e-05 ctgtttggtg agatggaa ctttagcatg chr10:50751834-50751914 35 7.90e-05 ccccaattca agatggaa tcactctggt chr20:23116255-23116335 39 9.03e-05 ccatagccaa aggtggag gcaacccaga chr9:128004805-128004885 59 9.03e-05 attgataacc aggtGGAG TTCACTCTAT chr1:11748755-11748835 37 1.17e-04 gggctgggtc aaatgggg ttgggacttg chr12:31891668-31891748 31 1.17e-04 ACTGCATAAG AAATGGGG AAgcagtggc chr16:53464459-53464539 55 1.17e-04 tggctaggaa aaatgggg ctgggactgg chr2:189192415-189192495 3 1.35e-04 aa aaatggtg ttagagtgga chr15:68344414-68344494 13 1.35e-04 ctaaaaatca aaatggtg tcacccatgt chr14:103609979-10361005 4 1.47e-04 tga ggatggag acagatcagg chr3:32098176-32098256 37 2.17e-04 aacccttgta aaagggag gagggacata chr1:26810573-26810653 34 2.17e-04 ttcctattta agatgcag ttgctctggt chr20:21637450-21637530 58 2.17e-04 gtcttcttgt aaagggag tggggagata chr5:87547388-87547468 36 2.65e-04 gttagaagca agatggga gtcaactatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGGAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:223688027-223688107 1.5e-05 37_[+1]_35 chr7:156716277-156716357 1.5e-05 15_[+1]_57 chr21:46265384-46265464 1.5e-05 34_[+1]_38 chr1:228312993-228313073 1.5e-05 52_[+1]_20 chr11:64252211-64252291 1.5e-05 72_[+1] chr15:40196483-40196563 1.5e-05 25_[+1]_47 chr4:138889154-138889234 1.5e-05 20_[+1]_52 chr17:25435137-25435217 1.5e-05 35_[+1]_37 chr6:110176790-110176870 1.5e-05 33_[+1]_39 chr12:46870099-46870179 1.5e-05 57_[+1]_15 chr5:107757591-107757671 1.5e-05 26_[+1]_46 chr2:104086443-104086523 1.5e-05 24_[+1]_48 chr1:157298070-157298150 1.5e-05 50_[+1]_22 chr18:46488814-46488894 1.5e-05 9_[+1]_63 chr15:68316163-68316243 1.5e-05 30_[+1]_42 chr3:9686068-9686148 1.5e-05 14_[+1]_58 chr5:180603741-180603821 1.5e-05 32_[+1]_40 chr10:105287487-10528756 1.5e-05 3_[+1]_69 chr7:156413063-156413143 1.5e-05 10_[+1]_62 chr21:30604583-30604663 1.5e-05 35_[+1]_37 chr11:5388950-5389030 1.5e-05 19_[+1]_53 chr7:77507965-77508045 1.5e-05 45_[+1]_27 chr6:49690217-49690297 1.5e-05 56_[+1]_16 chr6:15198202-15198282 1.5e-05 24_[+1]_48 chr11:67278447-67278527 1.5e-05 56_[+1]_16 chr1:100001489-100001569 1.5e-05 40_[+1]_32 chr6:161632035-161632115 1.5e-05 59_[+1]_13 chr8:30060517-30060597 1.5e-05 36_[+1]_36 chr16:46685333-46685413 1.5e-05 60_[+1]_12 chr3:119358492-119358572 1.5e-05 16_[+1]_56 chr3:47528961-47529041 1.5e-05 18_[+1]_54 chr7:106485212-106485292 1.5e-05 37_[+1]_35 chr1:67381028-67381108 1.5e-05 33_[+1]_39 chr7:4933707-4933787 1.5e-05 26_[+1]_46 chr1:8998638-8998718 1.5e-05 15_[+1]_57 chr6:2926853-2926933 1.5e-05 12_[+1]_60 chr9:79041103-79041183 1.5e-05 51_[+1]_21 chr6:107305345-107305425 1.5e-05 26_[+1]_46 chr22:31145417-31145497 1.5e-05 15_[+1]_57 chr12:125101110-12510119 1.5e-05 1_[+1]_71 chr7:25967410-25967490 1.5e-05 18_[+1]_54 chr9:97114777-97114857 1.5e-05 46_[+1]_26 chr11:62196832-62196912 1.5e-05 20_[+1]_52 chr1:16843643-16843723 1.5e-05 21_[+1]_51 chr12:47620158-47620238 1.5e-05 13_[+1]_59 chr7:45028883-45028963 1.5e-05 25_[+1]_47 chr10:95043327-95043407 1.5e-05 14_[+1]_58 chr1:65996504-65996584 1.5e-05 13_[+1]_59 chr13:96010268-96010348 1.5e-05 31_[+1]_41 chr12:111257117-11125719 1.5e-05 26_[+1]_46 chr9:74569740-74569820 1.5e-05 29_[+1]_43 chr18:8934031-8934111 1.5e-05 33_[+1]_39 chr14:94556038-94556118 1.5e-05 3_[+1]_69 chr17:55051586-55051666 1.5e-05 9_[+1]_63 chr1:9681283-9681363 1.5e-05 34_[+1]_38 chr10:50758159-50758239 1.5e-05 23_[+1]_49 chr17:56991393-56991473 1.5e-05 42_[+1]_30 chr3:5769927-5770007 1.5e-05 3_[+1]_69 chr1:51687397-51687477 1.5e-05 46_[+1]_26 chr7:133776316-133776396 1.5e-05 37_[+1]_35 chr3:195784686-195784766 3.4e-05 44_[+1]_28 chr19:21880691-21880771 3.4e-05 2_[+1]_70 chr2:20701836-20701916 3.4e-05 49_[+1]_23 chr9:139684121-139684201 3.4e-05 37_[+1]_35 chr8:42650487-42650567 3.4e-05 43_[+1]_29 chr7:92314965-92315045 3.4e-05 9_[+1]_63 chr1:142886554-142886634 3.4e-05 34_[+1]_38 chr7:23634925-23635005 3.4e-05 55_[+1]_17 chr11:33316487-33316567 3.4e-05 38_[+1]_34 chr12:103066499-10306657 3.4e-05 58_[+1]_14 chr7:8362412-8362492 3.4e-05 55_[+1]_17 chr6:134343853-134343933 3.4e-05 70_[+1]_2 chr19:43949708-43949788 3.4e-05 40_[+1]_32 chr8:102921088-102921168 3.4e-05 36_[+1]_36 chr6:36852534-36852614 3.4e-05 24_[+1]_48 chr16:28550728-28550808 3.4e-05 45_[+1]_27 chr6:27743093-27743173 3.4e-05 40_[+1]_32 chr18:47956115-47956195 3.4e-05 9_[+1]_63 chr22:28985269-28985349 3.4e-05 17_[+1]_55 chr11:116821062-11682114 3.4e-05 36_[+1]_36 chr19:21803932-21804012 3.4e-05 37_[+1]_35 chr6:26491956-26492036 3.4e-05 57_[+1]_15 chr3:15445631-15445711 3.4e-05 39_[+1]_33 chr19:49396050-49396130 3.4e-05 26_[+1]_46 chr1:38026185-38026265 3.4e-05 7_[+1]_65 chr2:112721274-112721354 3.4e-05 38_[+1]_34 chr12:91681675-91681755 3.4e-05 8_[+1]_64 chr6:110896196-110896276 3.4e-05 25_[+1]_47 chr16:20897788-20897868 3.4e-05 33_[+1]_39 chr12:102261590-10226167 3.4e-05 25_[+1]_47 chr9:139675613-139675693 3.4e-05 65_[+1]_7 chr1:84847892-84847972 3.4e-05 37_[+1]_35 chr1:84836654-84836734 3.4e-05 40_[+1]_32 chr5:77074543-77074623 6e-05 61_[+1]_11 chr10:60038813-60038893 6e-05 71_[+1]_1 chr2:216482990-216483070 7.9e-05 25_[+1]_47 chr15:68270176-68270256 7.9e-05 28_[+1]_44 chr10:50751834-50751914 7.9e-05 34_[+1]_38 chr20:23116255-23116335 9e-05 38_[+1]_34 chr9:128004805-128004885 9e-05 58_[+1]_14 chr1:11748755-11748835 0.00012 36_[+1]_36 chr12:31891668-31891748 0.00012 30_[+1]_42 chr16:53464459-53464539 0.00012 54_[+1]_18 chr2:189192415-189192495 0.00014 2_[+1]_70 chr15:68344414-68344494 0.00014 12_[+1]_60 chr14:103609979-10361005 0.00015 3_[+1]_69 chr3:32098176-32098256 0.00022 36_[+1]_36 chr1:26810573-26810653 0.00022 33_[+1]_39 chr20:21637450-21637530 0.00022 57_[+1]_15 chr5:87547388-87547468 0.00027 35_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGGAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARATGGAG width=8 seqs=110 chr2:223688027-223688107 ( 38) AGATGGAG 1 chr7:156716277-156716357 ( 16) AGATGGAG 1 chr21:46265384-46265464 ( 35) AGATGGAG 1 chr1:228312993-228313073 ( 53) AGATGGAG 1 chr11:64252211-64252291 ( 73) AGATGGAG 1 chr15:40196483-40196563 ( 26) AGATGGAG 1 chr4:138889154-138889234 ( 21) AGATGGAG 1 chr17:25435137-25435217 ( 36) AGATGGAG 1 chr6:110176790-110176870 ( 34) AGATGGAG 1 chr12:46870099-46870179 ( 58) AGATGGAG 1 chr5:107757591-107757671 ( 27) AGATGGAG 1 chr2:104086443-104086523 ( 25) AGATGGAG 1 chr1:157298070-157298150 ( 51) AGATGGAG 1 chr18:46488814-46488894 ( 10) AGATGGAG 1 chr15:68316163-68316243 ( 31) AGATGGAG 1 chr3:9686068-9686148 ( 15) AGATGGAG 1 chr5:180603741-180603821 ( 33) AGATGGAG 1 chr10:105287487-10528756 ( 4) AGATGGAG 1 chr7:156413063-156413143 ( 11) AGATGGAG 1 chr21:30604583-30604663 ( 36) AGATGGAG 1 chr11:5388950-5389030 ( 20) AGATGGAG 1 chr7:77507965-77508045 ( 46) AGATGGAG 1 chr6:49690217-49690297 ( 57) AGATGGAG 1 chr6:15198202-15198282 ( 25) AGATGGAG 1 chr11:67278447-67278527 ( 57) AGATGGAG 1 chr1:100001489-100001569 ( 41) AGATGGAG 1 chr6:161632035-161632115 ( 60) AGATGGAG 1 chr8:30060517-30060597 ( 37) AGATGGAG 1 chr16:46685333-46685413 ( 61) AGATGGAG 1 chr3:119358492-119358572 ( 17) AGATGGAG 1 chr3:47528961-47529041 ( 19) AGATGGAG 1 chr7:106485212-106485292 ( 38) AGATGGAG 1 chr1:67381028-67381108 ( 34) AGATGGAG 1 chr7:4933707-4933787 ( 27) AGATGGAG 1 chr1:8998638-8998718 ( 16) AGATGGAG 1 chr6:2926853-2926933 ( 13) AGATGGAG 1 chr9:79041103-79041183 ( 52) AGATGGAG 1 chr6:107305345-107305425 ( 27) AGATGGAG 1 chr22:31145417-31145497 ( 16) AGATGGAG 1 chr12:125101110-12510119 ( 2) AGATGGAG 1 chr7:25967410-25967490 ( 19) AGATGGAG 1 chr9:97114777-97114857 ( 47) AGATGGAG 1 chr11:62196832-62196912 ( 21) AGATGGAG 1 chr1:16843643-16843723 ( 22) AGATGGAG 1 chr12:47620158-47620238 ( 14) AGATGGAG 1 chr7:45028883-45028963 ( 26) AGATGGAG 1 chr10:95043327-95043407 ( 15) AGATGGAG 1 chr1:65996504-65996584 ( 14) AGATGGAG 1 chr13:96010268-96010348 ( 32) AGATGGAG 1 chr12:111257117-11125719 ( 27) AGATGGAG 1 chr9:74569740-74569820 ( 30) AGATGGAG 1 chr18:8934031-8934111 ( 34) AGATGGAG 1 chr14:94556038-94556118 ( 4) AGATGGAG 1 chr17:55051586-55051666 ( 10) AGATGGAG 1 chr1:9681283-9681363 ( 35) AGATGGAG 1 chr10:50758159-50758239 ( 24) AGATGGAG 1 chr17:56991393-56991473 ( 43) AGATGGAG 1 chr3:5769927-5770007 ( 4) AGATGGAG 1 chr1:51687397-51687477 ( 47) AGATGGAG 1 chr7:133776316-133776396 ( 38) AGATGGAG 1 chr3:195784686-195784766 ( 45) AAATGGAG 1 chr19:21880691-21880771 ( 3) AAATGGAG 1 chr2:20701836-20701916 ( 50) AAATGGAG 1 chr9:139684121-139684201 ( 38) AAATGGAG 1 chr8:42650487-42650567 ( 44) AAATGGAG 1 chr7:92314965-92315045 ( 10) AAATGGAG 1 chr1:142886554-142886634 ( 35) AAATGGAG 1 chr7:23634925-23635005 ( 56) AAATGGAG 1 chr11:33316487-33316567 ( 39) AAATGGAG 1 chr12:103066499-10306657 ( 59) AAATGGAG 1 chr7:8362412-8362492 ( 56) AAATGGAG 1 chr6:134343853-134343933 ( 71) AAATGGAG 1 chr19:43949708-43949788 ( 41) AAATGGAG 1 chr8:102921088-102921168 ( 37) AAATGGAG 1 chr6:36852534-36852614 ( 25) AAATGGAG 1 chr16:28550728-28550808 ( 46) AAATGGAG 1 chr6:27743093-27743173 ( 41) AAATGGAG 1 chr18:47956115-47956195 ( 10) AAATGGAG 1 chr22:28985269-28985349 ( 18) AAATGGAG 1 chr11:116821062-11682114 ( 37) AAATGGAG 1 chr19:21803932-21804012 ( 38) AAATGGAG 1 chr6:26491956-26492036 ( 58) AAATGGAG 1 chr3:15445631-15445711 ( 40) AAATGGAG 1 chr19:49396050-49396130 ( 27) AAATGGAG 1 chr1:38026185-38026265 ( 8) AAATGGAG 1 chr2:112721274-112721354 ( 39) AAATGGAG 1 chr12:91681675-91681755 ( 9) AAATGGAG 1 chr6:110896196-110896276 ( 26) AAATGGAG 1 chr16:20897788-20897868 ( 34) AAATGGAG 1 chr12:102261590-10226167 ( 26) AAATGGAG 1 chr9:139675613-139675693 ( 66) AAATGGAG 1 chr1:84847892-84847972 ( 38) AAATGGAG 1 chr1:84836654-84836734 ( 41) AAATGGAG 1 chr5:77074543-77074623 ( 62) AGATGGTG 1 chr10:60038813-60038893 ( 72) AGATGGTG 1 chr2:216482990-216483070 ( 26) AGATGGAA 1 chr15:68270176-68270256 ( 29) AGATGGAA 1 chr10:50751834-50751914 ( 35) AGATGGAA 1 chr20:23116255-23116335 ( 39) AGGTGGAG 1 chr9:128004805-128004885 ( 59) AGGTGGAG 1 chr1:11748755-11748835 ( 37) AAATGGGG 1 chr12:31891668-31891748 ( 31) AAATGGGG 1 chr16:53464459-53464539 ( 55) AAATGGGG 1 chr2:189192415-189192495 ( 3) AAATGGTG 1 chr15:68344414-68344494 ( 13) AAATGGTG 1 chr14:103609979-10361005 ( 4) GGATGGAG 1 chr3:32098176-32098256 ( 37) AAAGGGAG 1 chr1:26810573-26810653 ( 34) AGATGCAG 1 chr20:21637450-21637530 ( 58) AAAGGGAG 1 chr5:87547388-87547468 ( 36) AGATGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGGAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.95604 E= 6.3e-162 179 -1343 -458 -1343 35 -1343 154 -1343 178 -1343 -358 -1343 -1343 -1343 -358 182 -1343 -1343 220 -1343 -1343 -458 218 -1343 170 -1343 -258 -294 -297 -1343 214 -1343 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGGAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 6.3e-162 0.990909 0.000000 0.009091 0.000000 0.363636 0.000000 0.636364 0.000000 0.981818 0.000000 0.018182 0.000000 0.000000 0.000000 0.018182 0.981818 0.000000 0.000000 1.000000 0.000000 0.000000 0.009091 0.990909 0.000000 0.927273 0.000000 0.036364 0.036364 0.036364 0.000000 0.963636 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGGAG MEME-1 regular expression -------------------------------------------------------------------------------- A[GA]ATGGAG -------------------------------------------------------------------------------- Time 5.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GACTCCAT MEME-2 width = 8 sites = 96 llr = 929 E-value = 6.6e-134 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 39::::a: pos.-specific C ::a:aa:: probability G 7::::::: matrix T :::a:::a bits 2.2 * 2.0 * ** 1.8 * **** 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACTCCAT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:101350885-101350965 64 1.42e-05 gagccagata gactccat cttggctcc chr6:164361905-164361985 13 1.42e-05 gaaccagagc gactccat cttgaacggg chr19:46081292-46081372 22 1.42e-05 taacttgact gactccat cttacttcca chr9:99748092-99748172 34 1.42e-05 gaaccagagc gactccat cttgaatagg chr21:44356601-44356681 67 1.42e-05 gagccagaca gactccat cttggc chr1:46409043-46409123 11 1.42e-05 agactagagt gactccat cttgattaaa chr19:2954197-2954277 40 1.42e-05 aaaccagagc gactccat cttgaatagg chr4:48081105-48081185 9 1.42e-05 acctaact gactccat cttgcttcta chr16:29781023-29781103 13 1.42e-05 tagcatgggt gactccat tttggtttgg chr17:62926158-62926238 46 1.42e-05 agacatagga gactccat tttgttctgt chr21:45633730-45633810 54 1.42e-05 gaaccagagt gactccat cttaaatagg chr15:69241628-69241708 17 1.42e-05 tgacataagt gactccat tttgttattg chr12:92230664-92230744 17 1.42e-05 tagcatgagt gactccat tttggttttg chr1:28691465-28691545 72 1.42e-05 gagccagaca gactccat t chr10:76006421-76006501 64 1.42e-05 gagcatgggt gactccat tttgatttt chr1:52224150-52224230 25 1.42e-05 taacaagagt gactccat tttggtttgg chr11:73239205-73239285 54 1.42e-05 gaaccagagc gactccat tttgaatgag chr1:17219547-17219627 44 1.42e-05 tgacatggct gactccat cttggttcta chr12:7165621-7165701 50 1.42e-05 tagcatgggt gactccat cttgcctcta chr1:36482425-36482505 40 1.42e-05 tagcatgagt gactccat tttggtttgg chr17:77066511-77066591 42 1.42e-05 tagcatgagt gactccat cttgctttgc chr1:116820561-116820641 22 1.42e-05 taacattagt gactccat tttgattttg chr1:45910352-45910432 60 1.42e-05 taacatcgct gactccat cttgcttcta chr15:34669241-34669321 41 1.42e-05 gaaccagagt gactccat cttgaatagg chr1:185310710-185310790 8 1.42e-05 catgagt gactccat tttggtttgg chr1:203748147-203748227 19 1.42e-05 gaaccagagc gactccat cttaaatggc chr3:58692272-58692352 52 1.42e-05 gaaccagagt gactccat cttgaatagg chr14:65465343-65465423 39 1.42e-05 aaacacaagt gactccat tttgattttg chr20:5726872-5726952 32 1.42e-05 tgacctaact gactccat cttgcttcta chr3:156486320-156486400 63 1.42e-05 tagcatgagt gactccat tttgatttgg chr1:150681687-150681767 38 1.42e-05 agacataaga gactccat tttgaaaaag chr1:68388904-68388984 31 1.42e-05 tagcaagagt gactccat tttgtttagg chr15:49481334-49481414 4 1.42e-05 aat gactccat tttggtttgg chr17:13379037-13379117 16 1.42e-05 tggcatgggt gactccat cttgcttcca chr14:103609979-10361005 56 1.42e-05 gaaccagagt gactccat cttgaatagg chr19:30134620-30134700 45 1.42e-05 gaaccagagt gactccat cttgaatagg chr14:76686377-76686457 35 1.42e-05 tgacacaagt gactccat tttgaatctg chr19:51252900-51252980 40 1.42e-05 gagctggaca gactccat tttggtttct chr7:137944534-137944614 58 1.42e-05 ggacatggct gactccat cttgcttcta chr1:220448924-220449004 46 1.42e-05 taacttaacc gactccat cttgcttcta chr19:58321704-58321784 56 1.42e-05 agacataaga gactccat tttgttcagt chr3:21557064-21557144 40 1.42e-05 tagcacaact gactccat cttgcttata chr12:9184954-9185034 55 1.42e-05 tgacatagtt gactccat tttgcttcta chr3:172255707-172255787 53 1.42e-05 taacttaact gactccat cttgcttcta chr17:40809994-40810074 42 1.42e-05 tagcgtgagt gactccat tttggtttgg chr2:202440857-202440937 54 1.42e-05 cttagaaaaa gactccat tttatatttc chr2:69961383-69961463 52 1.42e-05 gaacatagct gactccat cttgcttctg chr16:53464459-53464539 28 1.42e-05 aaaccagagt gactccat cttgagtgat chr11:33216181-33216261 18 1.42e-05 tagcatgaat gactccat tttggtttgg chr7:36315633-36315713 50 1.42e-05 gaaccagagt gactccat cttgaatagg chr1:236478925-236479005 53 1.42e-05 tgacctaacc gactccat cttgcttcta chr2:113365409-113365489 45 1.42e-05 agacctaact gactccat cttgcttcta chr9:126903376-126903456 12 1.42e-05 aaaccagagt gactccat cttgaatagg chr15:68270176-68270256 50 1.42e-05 tagcatgggt gactccat tttggttttt chr5:29194296-29194376 46 1.42e-05 taacagtagt gactccat tttgattctg chr18:29390463-29390543 65 1.42e-05 agacataaga gactccat tttgttct chr2:11835916-11835996 35 1.42e-05 tagcatgagt gactccat tttgggttgg chr12:48977665-48977745 31 1.42e-05 TAACATCAGT GACTCCAT CTTAGGCTAC chr7:30767734-30767814 44 3.28e-05 gaaccagagc aactccat cttgaatagg chr5:77074343-77074423 69 3.28e-05 gaaccaaagc aactccat cttg chr3:155579748-155579828 39 3.28e-05 taacctgacc aactccat cttgcctctg chr2:236352363-236352443 17 3.28e-05 gaaccagagg aactccat cttgaatagg chr12:11774855-11774935 55 3.28e-05 gaacaagagc aactccat cttgaatagg chr6:15210526-15210606 46 3.28e-05 gaaccagagc aactccat tttgaatagg chr18:53615330-53615410 26 3.28e-05 gaaccagagc aactccat cttgaatagg chr1:67865463-67865543 3 3.28e-05 gc aactccat cttgaataga chr10:6047307-6047387 50 3.28e-05 gaaccagagc aactccat cttgaatagg chr5:85868798-85868878 37 3.28e-05 gaaccagagt aactccat cttaaatagg chr1:95078531-95078611 30 3.28e-05 gaaccagagc aactccat cttaaataag chr9:38252707-38252787 44 3.28e-05 gaaccagagc aactccat cttaaatagg chr5:131076380-131076460 6 3.28e-05 agagc aactccat cttgaatagg chr12:32207633-32207713 44 3.28e-05 gaaccagagc aactccat cttgaatagg chr7:143109580-143109660 27 3.28e-05 gaaccagagc aactccat cttgagtagg chr16:53453063-53453143 71 3.28e-05 caaccagagc aactccat ct chr5:78205238-78205318 15 3.28e-05 agacataaga aactccat tttgatctgt chr4:37672865-37672945 31 3.28e-05 gaaccagaat aactccat cttgaataat chr9:79052070-79052150 36 3.28e-05 gaacaagagc aactccat cttgaatagg chr16:8165956-8166036 66 3.28e-05 tgacctaacc aactccat cttgtgt chr1:51687397-51687477 18 3.28e-05 tgacctaacc aactccat cttgcttcta chr19:48753715-48753795 51 5.46e-05 taacattagt ggctccat tttgttctga chr6:110896196-110896276 6 5.46e-05 cacta gaccccat cagaccaaac chr11:67778907-67778987 39 7.95e-05 tggcatgagt gcctccat tttggtttgg chr10:17045897-17045977 11 7.95e-05 TGACATTTCC CACTCCAT TGTCTAAAAC chr16:10422360-10422440 1 7.95e-05 . gcctccat cttgagtgag chr5:179946353-179946433 11 7.95e-05 tgacattagt cactccat tttgatactg chr6:110176790-110176870 55 9.77e-05 cctgtgctaa gattccat gtcaccaaac chr3:15150613-15150693 10 9.77e-05 tgttagaaa gattccat cttacatttc chr1:55698993-55699073 42 1.16e-04 GATTGGTTTA GACTCAAT CTCACACTCT chr6:135645820-135645900 61 1.16e-04 ATAAAGTTCA GACTCAAT AATATGGCCA chr1:11748755-11748835 10 1.45e-04 aaccagagc aaccccat cttgagtagg chr4:8244707-8244787 61 1.45e-04 gaaccagagc agctccat cttgaatggg chr7:100795401-100795481 66 1.45e-04 ttttaagttc agctccat cttgaaa chr20:23116255-23116335 1 1.45e-04 . aaccccat gttcctagca chr12:31468362-31468442 61 1.78e-04 CTTTTCTTCT GACACCAT CTATCATCAT chr14:32490178-32490258 60 1.78e-04 tagcttgagt tactccat actgctttgt chr6:14394400-14394480 41 1.92e-04 tagccacagg gagtccat tttgtctgtc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:101350885-101350965 1.4e-05 63_[+2]_9 chr6:164361905-164361985 1.4e-05 12_[+2]_60 chr19:46081292-46081372 1.4e-05 21_[+2]_51 chr9:99748092-99748172 1.4e-05 33_[+2]_39 chr21:44356601-44356681 1.4e-05 66_[+2]_6 chr1:46409043-46409123 1.4e-05 10_[+2]_62 chr19:2954197-2954277 1.4e-05 39_[+2]_33 chr4:48081105-48081185 1.4e-05 8_[+2]_64 chr16:29781023-29781103 1.4e-05 12_[+2]_60 chr17:62926158-62926238 1.4e-05 45_[+2]_27 chr21:45633730-45633810 1.4e-05 53_[+2]_19 chr15:69241628-69241708 1.4e-05 16_[+2]_56 chr12:92230664-92230744 1.4e-05 16_[+2]_56 chr1:28691465-28691545 1.4e-05 71_[+2]_1 chr10:76006421-76006501 1.4e-05 63_[+2]_9 chr1:52224150-52224230 1.4e-05 24_[+2]_48 chr11:73239205-73239285 1.4e-05 53_[+2]_19 chr1:17219547-17219627 1.4e-05 43_[+2]_29 chr12:7165621-7165701 1.4e-05 49_[+2]_23 chr1:36482425-36482505 1.4e-05 39_[+2]_33 chr17:77066511-77066591 1.4e-05 41_[+2]_31 chr1:116820561-116820641 1.4e-05 21_[+2]_51 chr1:45910352-45910432 1.4e-05 59_[+2]_13 chr15:34669241-34669321 1.4e-05 40_[+2]_32 chr1:185310710-185310790 1.4e-05 7_[+2]_65 chr1:203748147-203748227 1.4e-05 18_[+2]_54 chr3:58692272-58692352 1.4e-05 51_[+2]_21 chr14:65465343-65465423 1.4e-05 38_[+2]_34 chr20:5726872-5726952 1.4e-05 31_[+2]_41 chr3:156486320-156486400 1.4e-05 62_[+2]_10 chr1:150681687-150681767 1.4e-05 37_[+2]_35 chr1:68388904-68388984 1.4e-05 30_[+2]_42 chr15:49481334-49481414 1.4e-05 3_[+2]_69 chr17:13379037-13379117 1.4e-05 15_[+2]_57 chr14:103609979-10361005 1.4e-05 55_[+2]_17 chr19:30134620-30134700 1.4e-05 44_[+2]_28 chr14:76686377-76686457 1.4e-05 34_[+2]_38 chr19:51252900-51252980 1.4e-05 39_[+2]_33 chr7:137944534-137944614 1.4e-05 57_[+2]_15 chr1:220448924-220449004 1.4e-05 45_[+2]_27 chr19:58321704-58321784 1.4e-05 55_[+2]_17 chr3:21557064-21557144 1.4e-05 39_[+2]_33 chr12:9184954-9185034 1.4e-05 54_[+2]_18 chr3:172255707-172255787 1.4e-05 52_[+2]_20 chr17:40809994-40810074 1.4e-05 41_[+2]_31 chr2:202440857-202440937 1.4e-05 53_[+2]_19 chr2:69961383-69961463 1.4e-05 51_[+2]_21 chr16:53464459-53464539 1.4e-05 27_[+2]_45 chr11:33216181-33216261 1.4e-05 17_[+2]_55 chr7:36315633-36315713 1.4e-05 49_[+2]_23 chr1:236478925-236479005 1.4e-05 52_[+2]_20 chr2:113365409-113365489 1.4e-05 44_[+2]_28 chr9:126903376-126903456 1.4e-05 11_[+2]_61 chr15:68270176-68270256 1.4e-05 49_[+2]_23 chr5:29194296-29194376 1.4e-05 45_[+2]_27 chr18:29390463-29390543 1.4e-05 64_[+2]_8 chr2:11835916-11835996 1.4e-05 34_[+2]_38 chr12:48977665-48977745 1.4e-05 30_[+2]_42 chr7:30767734-30767814 3.3e-05 43_[+2]_29 chr5:77074343-77074423 3.3e-05 68_[+2]_4 chr3:155579748-155579828 3.3e-05 38_[+2]_34 chr2:236352363-236352443 3.3e-05 16_[+2]_56 chr12:11774855-11774935 3.3e-05 54_[+2]_18 chr6:15210526-15210606 3.3e-05 45_[+2]_27 chr18:53615330-53615410 3.3e-05 25_[+2]_47 chr1:67865463-67865543 3.3e-05 2_[+2]_70 chr10:6047307-6047387 3.3e-05 49_[+2]_23 chr5:85868798-85868878 3.3e-05 36_[+2]_36 chr1:95078531-95078611 3.3e-05 29_[+2]_43 chr9:38252707-38252787 3.3e-05 43_[+2]_29 chr5:131076380-131076460 3.3e-05 5_[+2]_67 chr12:32207633-32207713 3.3e-05 43_[+2]_29 chr7:143109580-143109660 3.3e-05 26_[+2]_46 chr16:53453063-53453143 3.3e-05 70_[+2]_2 chr5:78205238-78205318 3.3e-05 14_[+2]_58 chr4:37672865-37672945 3.3e-05 30_[+2]_42 chr9:79052070-79052150 3.3e-05 35_[+2]_37 chr16:8165956-8166036 3.3e-05 65_[+2]_7 chr1:51687397-51687477 3.3e-05 17_[+2]_55 chr19:48753715-48753795 5.5e-05 50_[+2]_22 chr6:110896196-110896276 5.5e-05 5_[+2]_67 chr11:67778907-67778987 8e-05 38_[+2]_34 chr10:17045897-17045977 8e-05 10_[+2]_62 chr16:10422360-10422440 8e-05 [+2]_72 chr5:179946353-179946433 8e-05 10_[+2]_62 chr6:110176790-110176870 9.8e-05 54_[+2]_18 chr3:15150613-15150693 9.8e-05 9_[+2]_63 chr1:55698993-55699073 0.00012 41_[+2]_31 chr6:135645820-135645900 0.00012 60_[+2]_12 chr1:11748755-11748835 0.00015 9_[+2]_63 chr4:8244707-8244787 0.00015 60_[+2]_12 chr7:100795401-100795481 0.00015 65_[+2]_7 chr20:23116255-23116335 0.00015 [+2]_72 chr12:31468362-31468442 0.00018 60_[+2]_12 chr14:32490178-32490258 0.00018 59_[+2]_13 chr6:14394400-14394480 0.00019 40_[+2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACTCCAT width=8 seqs=96 chr3:101350885-101350965 ( 64) GACTCCAT 1 chr6:164361905-164361985 ( 13) GACTCCAT 1 chr19:46081292-46081372 ( 22) GACTCCAT 1 chr9:99748092-99748172 ( 34) GACTCCAT 1 chr21:44356601-44356681 ( 67) GACTCCAT 1 chr1:46409043-46409123 ( 11) GACTCCAT 1 chr19:2954197-2954277 ( 40) GACTCCAT 1 chr4:48081105-48081185 ( 9) GACTCCAT 1 chr16:29781023-29781103 ( 13) GACTCCAT 1 chr17:62926158-62926238 ( 46) GACTCCAT 1 chr21:45633730-45633810 ( 54) GACTCCAT 1 chr15:69241628-69241708 ( 17) GACTCCAT 1 chr12:92230664-92230744 ( 17) GACTCCAT 1 chr1:28691465-28691545 ( 72) GACTCCAT 1 chr10:76006421-76006501 ( 64) GACTCCAT 1 chr1:52224150-52224230 ( 25) GACTCCAT 1 chr11:73239205-73239285 ( 54) GACTCCAT 1 chr1:17219547-17219627 ( 44) GACTCCAT 1 chr12:7165621-7165701 ( 50) GACTCCAT 1 chr1:36482425-36482505 ( 40) GACTCCAT 1 chr17:77066511-77066591 ( 42) GACTCCAT 1 chr1:116820561-116820641 ( 22) GACTCCAT 1 chr1:45910352-45910432 ( 60) GACTCCAT 1 chr15:34669241-34669321 ( 41) GACTCCAT 1 chr1:185310710-185310790 ( 8) GACTCCAT 1 chr1:203748147-203748227 ( 19) GACTCCAT 1 chr3:58692272-58692352 ( 52) GACTCCAT 1 chr14:65465343-65465423 ( 39) GACTCCAT 1 chr20:5726872-5726952 ( 32) GACTCCAT 1 chr3:156486320-156486400 ( 63) GACTCCAT 1 chr1:150681687-150681767 ( 38) GACTCCAT 1 chr1:68388904-68388984 ( 31) GACTCCAT 1 chr15:49481334-49481414 ( 4) GACTCCAT 1 chr17:13379037-13379117 ( 16) GACTCCAT 1 chr14:103609979-10361005 ( 56) GACTCCAT 1 chr19:30134620-30134700 ( 45) GACTCCAT 1 chr14:76686377-76686457 ( 35) GACTCCAT 1 chr19:51252900-51252980 ( 40) GACTCCAT 1 chr7:137944534-137944614 ( 58) GACTCCAT 1 chr1:220448924-220449004 ( 46) GACTCCAT 1 chr19:58321704-58321784 ( 56) GACTCCAT 1 chr3:21557064-21557144 ( 40) GACTCCAT 1 chr12:9184954-9185034 ( 55) GACTCCAT 1 chr3:172255707-172255787 ( 53) GACTCCAT 1 chr17:40809994-40810074 ( 42) GACTCCAT 1 chr2:202440857-202440937 ( 54) GACTCCAT 1 chr2:69961383-69961463 ( 52) GACTCCAT 1 chr16:53464459-53464539 ( 28) GACTCCAT 1 chr11:33216181-33216261 ( 18) GACTCCAT 1 chr7:36315633-36315713 ( 50) GACTCCAT 1 chr1:236478925-236479005 ( 53) GACTCCAT 1 chr2:113365409-113365489 ( 45) GACTCCAT 1 chr9:126903376-126903456 ( 12) GACTCCAT 1 chr15:68270176-68270256 ( 50) GACTCCAT 1 chr5:29194296-29194376 ( 46) GACTCCAT 1 chr18:29390463-29390543 ( 65) GACTCCAT 1 chr2:11835916-11835996 ( 35) GACTCCAT 1 chr12:48977665-48977745 ( 31) GACTCCAT 1 chr7:30767734-30767814 ( 44) AACTCCAT 1 chr5:77074343-77074423 ( 69) AACTCCAT 1 chr3:155579748-155579828 ( 39) AACTCCAT 1 chr2:236352363-236352443 ( 17) AACTCCAT 1 chr12:11774855-11774935 ( 55) AACTCCAT 1 chr6:15210526-15210606 ( 46) AACTCCAT 1 chr18:53615330-53615410 ( 26) AACTCCAT 1 chr1:67865463-67865543 ( 3) AACTCCAT 1 chr10:6047307-6047387 ( 50) AACTCCAT 1 chr5:85868798-85868878 ( 37) AACTCCAT 1 chr1:95078531-95078611 ( 30) AACTCCAT 1 chr9:38252707-38252787 ( 44) AACTCCAT 1 chr5:131076380-131076460 ( 6) AACTCCAT 1 chr12:32207633-32207713 ( 44) AACTCCAT 1 chr7:143109580-143109660 ( 27) AACTCCAT 1 chr16:53453063-53453143 ( 71) AACTCCAT 1 chr5:78205238-78205318 ( 15) AACTCCAT 1 chr4:37672865-37672945 ( 31) AACTCCAT 1 chr9:79052070-79052150 ( 36) AACTCCAT 1 chr16:8165956-8166036 ( 66) AACTCCAT 1 chr1:51687397-51687477 ( 18) AACTCCAT 1 chr19:48753715-48753795 ( 51) GGCTCCAT 1 chr6:110896196-110896276 ( 6) GACCCCAT 1 chr11:67778907-67778987 ( 39) GCCTCCAT 1 chr10:17045897-17045977 ( 11) CACTCCAT 1 chr16:10422360-10422440 ( 1) GCCTCCAT 1 chr5:179946353-179946433 ( 11) CACTCCAT 1 chr6:110176790-110176870 ( 55) GATTCCAT 1 chr3:15150613-15150693 ( 10) GATTCCAT 1 chr1:55698993-55699073 ( 42) GACTCAAT 1 chr6:135645820-135645900 ( 61) GACTCAAT 1 chr1:11748755-11748835 ( 10) AACCCCAT 1 chr4:8244707-8244787 ( 61) AGCTCCAT 1 chr7:100795401-100795481 ( 66) AGCTCCAT 1 chr20:23116255-23116335 ( 1) AACCCCAT 1 chr12:31468362-31468442 ( 61) GACACCAT 1 chr14:32490178-32490258 ( 60) TACTCCAT 1 chr6:14394400-14394480 ( 41) GAGTCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.01253 E= 6.6e-134 -13 -338 170 -474 173 -338 -280 -1323 -1323 216 -439 -374 -477 -280 -1323 178 -1323 220 -1323 -1323 -378 217 -1323 -1323 181 -1323 -1323 -1323 -1323 -1323 -1323 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 6.6e-134 0.260417 0.020833 0.708333 0.010417 0.947917 0.020833 0.031250 0.000000 0.000000 0.968750 0.010417 0.020833 0.010417 0.031250 0.000000 0.958333 0.000000 1.000000 0.000000 0.000000 0.020833 0.979167 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 regular expression -------------------------------------------------------------------------------- [GA]ACTCCAT -------------------------------------------------------------------------------- Time 8.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTGGTT MEME-3 width = 8 sites = 43 llr = 441 E-value = 5.8e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a::::: probability G ::::9a:: matrix T :a:91:aa bits 2.2 * * * 2.0 * * * 1.8 *** * * 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTGGTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:46265384-46265464 46 1.36e-05 gatggagtca ctctggtt cgaacgcttc chr15:40196483-40196563 37 1.36e-05 gatggagttg ctctggtt cacatgcttt chr5:107757591-107757671 38 1.36e-05 gatggagtca ctctggtt caaatgcctc chr2:104086443-104086523 36 1.36e-05 gatggagttg ctctggtt caaatgactc chr18:46488814-46488894 21 1.36e-05 gatggagttg ctctggtt caaactcctc chr5:180603741-180603821 44 1.36e-05 gatggagtca ctctggtt taaatgcctc chr10:105287487-10528756 15 1.36e-05 gatggagtgg ctctggtt tgaacacctc chr7:156413063-156413143 22 1.36e-05 gatggagttg ctctggtt cacacgcctc chr11:5388950-5389030 31 1.36e-05 gatggagttg ctctggtt caaatgcctc chr6:49690217-49690297 68 1.36e-05 gatggagttt ctctggtt cacac chr6:15198202-15198282 36 1.36e-05 gatggagttg ctctggtt caaatgcctc chr7:77104215-77104295 8 1.36e-05 ggagtca ctctggtt caaacaactc chr1:26810573-26810653 45 1.36e-05 gatgcagttg ctctggtt cacatgcccg chr11:67278447-67278527 68 1.36e-05 gatggagttg ctctggtt caaac chr9:97164515-97164595 8 1.36e-05 ggagtcg ctctggtt cacacgcctc chr3:15445631-15445711 51 1.36e-05 aatggagtta ctctggtt caaatgcctc chr7:4933707-4933787 38 1.36e-05 gatggagtca ctctggtt caaacgcctc chr22:31145417-31145497 27 1.36e-05 gatggagtca ctctggtt aggatgcttc chr12:125101110-12510119 13 1.36e-05 gatggagttg ctctggtt caaacacctc chr1:55698993-55699073 5 1.36e-05 gtcg ctctggtt tgaatgcttc chr10:95043327-95043407 26 1.36e-05 gatggagttg ctctggtt cacacgcctc chr1:65996504-65996584 25 1.36e-05 gatggagttg ctctggtt cagacgcctc chr17:56992921-56993001 11 1.36e-05 gatggagttg ctctggtt caaatgcctc chr12:111257117-11125719 38 1.36e-05 gatggagttg ctctggtt cacatccctc chr2:216482990-216483070 37 1.36e-05 gatggaagtg ctctggtt cacacgcctc chr9:74569740-74569820 41 1.36e-05 gatggagttg ctctggtt cacacacctc chr14:94556038-94556118 15 1.36e-05 gatggagtca ctctggtt caaatgcttc chr17:55051586-55051666 21 1.36e-05 gatggagtca ctctggtt aggttgcctg chr1:9681283-9681363 46 1.36e-05 gatggagttg ctctggtt caaatacctc chr10:50758159-50758239 35 1.36e-05 gatggagttg ctctggtt taaacacctc chr7:133776316-133776396 49 1.36e-05 gatggagttg ctctggtt caatgcctct chr10:50751834-50751914 46 1.36e-05 gatggaatca ctctggtt caaatgcctc chr12:125548239-12554831 10 1.36e-05 atggagttg ctctggtt caaatgcctc chr12:46870099-46870179 69 4.15e-05 gatggagttg ctctggct caca chr15:68316163-68316243 56 4.15e-05 tgctagattt ctcttgtt ttcataatct chr9:97114777-97114857 58 4.15e-05 gatggagttg ctctggct caaatgcctc chr1:16843643-16843723 47 4.15e-05 tgtcagcttt ctcttgtt gtcataattt chr12:131340817-13134089 21 4.15e-05 tgttaggttt ctcttgtt gtttataatt chr1:25576892-25576972 19 5.54e-05 gagagagtca ctcaggtt taaacaaggt chr7:6626181-6626261 16 5.54e-05 acctctgcct ctcaggtt caagcaattc chr7:25883224-25883304 37 7.65e-05 ACAATGGTTC CTCTGGTC TCCTCCTCGG chr18:9021623-9021703 57 7.65e-05 tctgtgtgtg ctccggtt cactgtgact chr17:65280392-65280472 4 9.00e-05 tag ctctcgtt caaatgcctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:46265384-46265464 1.4e-05 45_[+3]_27 chr15:40196483-40196563 1.4e-05 36_[+3]_36 chr5:107757591-107757671 1.4e-05 37_[+3]_35 chr2:104086443-104086523 1.4e-05 35_[+3]_37 chr18:46488814-46488894 1.4e-05 20_[+3]_52 chr5:180603741-180603821 1.4e-05 43_[+3]_29 chr10:105287487-10528756 1.4e-05 14_[+3]_58 chr7:156413063-156413143 1.4e-05 21_[+3]_51 chr11:5388950-5389030 1.4e-05 30_[+3]_42 chr6:49690217-49690297 1.4e-05 67_[+3]_5 chr6:15198202-15198282 1.4e-05 35_[+3]_37 chr7:77104215-77104295 1.4e-05 7_[+3]_65 chr1:26810573-26810653 1.4e-05 44_[+3]_28 chr11:67278447-67278527 1.4e-05 67_[+3]_5 chr9:97164515-97164595 1.4e-05 7_[+3]_65 chr3:15445631-15445711 1.4e-05 50_[+3]_22 chr7:4933707-4933787 1.4e-05 37_[+3]_35 chr22:31145417-31145497 1.4e-05 26_[+3]_46 chr12:125101110-12510119 1.4e-05 12_[+3]_60 chr1:55698993-55699073 1.4e-05 4_[+3]_68 chr10:95043327-95043407 1.4e-05 25_[+3]_47 chr1:65996504-65996584 1.4e-05 24_[+3]_48 chr17:56992921-56993001 1.4e-05 10_[+3]_62 chr12:111257117-11125719 1.4e-05 37_[+3]_35 chr2:216482990-216483070 1.4e-05 36_[+3]_36 chr9:74569740-74569820 1.4e-05 40_[+3]_32 chr14:94556038-94556118 1.4e-05 14_[+3]_58 chr17:55051586-55051666 1.4e-05 20_[+3]_52 chr1:9681283-9681363 1.4e-05 45_[+3]_27 chr10:50758159-50758239 1.4e-05 34_[+3]_38 chr7:133776316-133776396 1.4e-05 48_[+3]_24 chr10:50751834-50751914 1.4e-05 45_[+3]_27 chr12:125548239-12554831 1.4e-05 9_[+3]_63 chr12:46870099-46870179 4.1e-05 68_[+3]_4 chr15:68316163-68316243 4.1e-05 55_[+3]_17 chr9:97114777-97114857 4.1e-05 57_[+3]_15 chr1:16843643-16843723 4.1e-05 46_[+3]_26 chr12:131340817-13134089 4.1e-05 20_[+3]_52 chr1:25576892-25576972 5.5e-05 18_[+3]_54 chr7:6626181-6626261 5.5e-05 15_[+3]_57 chr7:25883224-25883304 7.6e-05 36_[+3]_36 chr18:9021623-9021703 7.6e-05 56_[+3]_16 chr17:65280392-65280472 9e-05 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTGGTT width=8 seqs=43 chr21:46265384-46265464 ( 46) CTCTGGTT 1 chr15:40196483-40196563 ( 37) CTCTGGTT 1 chr5:107757591-107757671 ( 38) CTCTGGTT 1 chr2:104086443-104086523 ( 36) CTCTGGTT 1 chr18:46488814-46488894 ( 21) CTCTGGTT 1 chr5:180603741-180603821 ( 44) CTCTGGTT 1 chr10:105287487-10528756 ( 15) CTCTGGTT 1 chr7:156413063-156413143 ( 22) CTCTGGTT 1 chr11:5388950-5389030 ( 31) CTCTGGTT 1 chr6:49690217-49690297 ( 68) CTCTGGTT 1 chr6:15198202-15198282 ( 36) CTCTGGTT 1 chr7:77104215-77104295 ( 8) CTCTGGTT 1 chr1:26810573-26810653 ( 45) CTCTGGTT 1 chr11:67278447-67278527 ( 68) CTCTGGTT 1 chr9:97164515-97164595 ( 8) CTCTGGTT 1 chr3:15445631-15445711 ( 51) CTCTGGTT 1 chr7:4933707-4933787 ( 38) CTCTGGTT 1 chr22:31145417-31145497 ( 27) CTCTGGTT 1 chr12:125101110-12510119 ( 13) CTCTGGTT 1 chr1:55698993-55699073 ( 5) CTCTGGTT 1 chr10:95043327-95043407 ( 26) CTCTGGTT 1 chr1:65996504-65996584 ( 25) CTCTGGTT 1 chr17:56992921-56993001 ( 11) CTCTGGTT 1 chr12:111257117-11125719 ( 38) CTCTGGTT 1 chr2:216482990-216483070 ( 37) CTCTGGTT 1 chr9:74569740-74569820 ( 41) CTCTGGTT 1 chr14:94556038-94556118 ( 15) CTCTGGTT 1 chr17:55051586-55051666 ( 21) CTCTGGTT 1 chr1:9681283-9681363 ( 46) CTCTGGTT 1 chr10:50758159-50758239 ( 35) CTCTGGTT 1 chr7:133776316-133776396 ( 49) CTCTGGTT 1 chr10:50751834-50751914 ( 46) CTCTGGTT 1 chr12:125548239-12554831 ( 10) CTCTGGTT 1 chr12:46870099-46870179 ( 69) CTCTGGCT 1 chr15:68316163-68316243 ( 56) CTCTTGTT 1 chr9:97114777-97114857 ( 58) CTCTGGCT 1 chr1:16843643-16843723 ( 47) CTCTTGTT 1 chr12:131340817-13134089 ( 21) CTCTTGTT 1 chr1:25576892-25576972 ( 19) CTCAGGTT 1 chr7:6626181-6626261 ( 16) CTCAGGTT 1 chr7:25883224-25883304 ( 37) CTCTGGTC 1 chr18:9021623-9021703 ( 57) CTCCGGTT 1 chr17:65280392-65280472 ( 4) CTCTCGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.05698 E= 5.8e-047 -1207 220 -1207 -1207 -1207 -1207 -1207 184 -1207 220 -1207 -1207 -262 -322 -1207 174 -1207 -322 205 -200 -1207 -1207 220 -1207 -1207 -222 -1207 178 -1207 -322 -1207 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 5.8e-047 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.046512 0.023256 0.000000 0.930233 0.000000 0.023256 0.906977 0.069767 0.000000 0.000000 1.000000 0.000000 0.000000 0.046512 0.000000 0.953488 0.000000 0.023256 0.000000 0.976744 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-3 regular expression -------------------------------------------------------------------------------- CTCTGGTT -------------------------------------------------------------------------------- Time 12.27 secs. ******************************************************************************** ******************************************************************************** MOTIF AACCAGAG MEME-4 width = 8 sites = 35 llr = 369 E-value = 3.8e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACCAGAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa:1a:a: pos.-specific C ::a9:::: probability G :::::a:a matrix T :::::::: bits 2.2 * * 2.0 * * * 1.8 * ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACCAGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCAGAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:30767734-30767814 35 1.50e-05 gaggtgtgtg aaccagag caactccatc chr6:164361905-164361985 4 1.50e-05 ttg aaccagag cgactccatc chr9:102796255-102796335 65 1.50e-05 gaggcgttca aaccagag tgactcca chr9:99748092-99748172 25 1.50e-05 gaggcatgtg aaccagag cgactccatc chr19:2954197-2954277 31 1.50e-05 caaacaaaaa aaccagag cgactccatc chr8:123842165-123842245 71 1.50e-05 gagctatttg aaccagag ca chr3:32098176-32098256 70 1.50e-05 gagccgtttg aaccagag caa chr2:236352363-236352443 8 1.50e-05 gtattgg aaccagag gaactccatc chr6:15210526-15210606 37 1.50e-05 gggacattgg aaccagag caactccatt chr18:53615330-53615410 17 1.50e-05 gaggtctttg aaccagag caactccatc chr1:11748755-11748835 1 1.50e-05 . aaccagag caaccccatc chr21:45633730-45633810 45 1.50e-05 gaggtatttg aaccagag tgactccatc chr10:6047307-6047387 41 1.50e-05 gaggtgtttg aaccagag caactccatc chr4:8244707-8244787 52 1.50e-05 gagacatgtg aaccagag cagctccatc chr5:85868798-85868878 28 1.50e-05 gaggcatgtg aaccagag taactccatc chr11:73239205-73239285 45 1.50e-05 gaggcgttcg aaccagag cgactccatt chr1:95078531-95078611 21 1.50e-05 gagtcatgtg aaccagag caactccatc chr9:38252707-38252787 35 1.50e-05 gaggcttgtg aaccagag caactccatc chr15:34669241-34669321 32 1.50e-05 gaggagtttg aaccagag tgactccatc chr1:203748147-203748227 10 1.50e-05 aggcactgg aaccagag cgactccatc chr3:58692272-58692352 43 1.50e-05 aaggcacttg aaccagag tgactccatc chr12:32207633-32207713 35 1.50e-05 gaagcatgtg aaccagag caactccatc chr6:158130759-158130839 18 1.50e-05 taggcgtgtg aaccagag caactccgtc chr7:143109580-143109660 18 1.50e-05 gaggcatgtg aaccagag caactccatc chr16:53453063-53453143 62 1.50e-05 gaggcgttac aaccagag caactccatc chr14:103609979-10361005 47 1.50e-05 gaggcattcg aaccagag tgactccatc chr19:30134620-30134700 36 1.50e-05 gcgacatttg aaccagag tgactccatc chr16:53464459-53464539 19 1.50e-05 gaggcatcca aaccagag tgactccatc chr7:36315633-36315713 41 1.50e-05 gaggcatttg aaccagag tgactccatc chr9:126903376-126903456 3 1.50e-05 ca aaccagag tgactccatc chr12:11774855-11774935 46 3.47e-05 gaagcacttg aacaagag caactccatc chr1:52224150-52224230 16 3.47e-05 tacggcattt aacaagag tgactccatt chr9:79052070-79052150 27 3.47e-05 gaaacatgtg aacaagag caactccatc chr6:13837413-13837493 38 4.61e-05 tgacaaatag agccagag aaggtcatga chr10:60038813-60038893 44 6.10e-05 gatacaagat aaccacag atagtccaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCAGAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:30767734-30767814 1.5e-05 34_[+4]_38 chr6:164361905-164361985 1.5e-05 3_[+4]_69 chr9:102796255-102796335 1.5e-05 64_[+4]_8 chr9:99748092-99748172 1.5e-05 24_[+4]_48 chr19:2954197-2954277 1.5e-05 30_[+4]_42 chr8:123842165-123842245 1.5e-05 70_[+4]_2 chr3:32098176-32098256 1.5e-05 69_[+4]_3 chr2:236352363-236352443 1.5e-05 7_[+4]_65 chr6:15210526-15210606 1.5e-05 36_[+4]_36 chr18:53615330-53615410 1.5e-05 16_[+4]_56 chr1:11748755-11748835 1.5e-05 [+4]_72 chr21:45633730-45633810 1.5e-05 44_[+4]_28 chr10:6047307-6047387 1.5e-05 40_[+4]_32 chr4:8244707-8244787 1.5e-05 51_[+4]_21 chr5:85868798-85868878 1.5e-05 27_[+4]_45 chr11:73239205-73239285 1.5e-05 44_[+4]_28 chr1:95078531-95078611 1.5e-05 20_[+4]_52 chr9:38252707-38252787 1.5e-05 34_[+4]_38 chr15:34669241-34669321 1.5e-05 31_[+4]_41 chr1:203748147-203748227 1.5e-05 9_[+4]_63 chr3:58692272-58692352 1.5e-05 42_[+4]_30 chr12:32207633-32207713 1.5e-05 34_[+4]_38 chr6:158130759-158130839 1.5e-05 17_[+4]_55 chr7:143109580-143109660 1.5e-05 17_[+4]_55 chr16:53453063-53453143 1.5e-05 61_[+4]_11 chr14:103609979-10361005 1.5e-05 46_[+4]_26 chr19:30134620-30134700 1.5e-05 35_[+4]_37 chr16:53464459-53464539 1.5e-05 18_[+4]_54 chr7:36315633-36315713 1.5e-05 40_[+4]_32 chr9:126903376-126903456 1.5e-05 2_[+4]_70 chr12:11774855-11774935 3.5e-05 45_[+4]_27 chr1:52224150-52224230 3.5e-05 15_[+4]_57 chr9:79052070-79052150 3.5e-05 26_[+4]_46 chr6:13837413-13837493 4.6e-05 37_[+4]_35 chr10:60038813-60038893 6.1e-05 43_[+4]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCAGAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACCAGAG width=8 seqs=35 chr7:30767734-30767814 ( 35) AACCAGAG 1 chr6:164361905-164361985 ( 4) AACCAGAG 1 chr9:102796255-102796335 ( 65) AACCAGAG 1 chr9:99748092-99748172 ( 25) AACCAGAG 1 chr19:2954197-2954277 ( 31) AACCAGAG 1 chr8:123842165-123842245 ( 71) AACCAGAG 1 chr3:32098176-32098256 ( 70) AACCAGAG 1 chr2:236352363-236352443 ( 8) AACCAGAG 1 chr6:15210526-15210606 ( 37) AACCAGAG 1 chr18:53615330-53615410 ( 17) AACCAGAG 1 chr1:11748755-11748835 ( 1) AACCAGAG 1 chr21:45633730-45633810 ( 45) AACCAGAG 1 chr10:6047307-6047387 ( 41) AACCAGAG 1 chr4:8244707-8244787 ( 52) AACCAGAG 1 chr5:85868798-85868878 ( 28) AACCAGAG 1 chr11:73239205-73239285 ( 45) AACCAGAG 1 chr1:95078531-95078611 ( 21) AACCAGAG 1 chr9:38252707-38252787 ( 35) AACCAGAG 1 chr15:34669241-34669321 ( 32) AACCAGAG 1 chr1:203748147-203748227 ( 10) AACCAGAG 1 chr3:58692272-58692352 ( 43) AACCAGAG 1 chr12:32207633-32207713 ( 35) AACCAGAG 1 chr6:158130759-158130839 ( 18) AACCAGAG 1 chr7:143109580-143109660 ( 18) AACCAGAG 1 chr16:53453063-53453143 ( 62) AACCAGAG 1 chr14:103609979-10361005 ( 47) AACCAGAG 1 chr19:30134620-30134700 ( 36) AACCAGAG 1 chr16:53464459-53464539 ( 19) AACCAGAG 1 chr7:36315633-36315713 ( 41) AACCAGAG 1 chr9:126903376-126903456 ( 3) AACCAGAG 1 chr12:11774855-11774935 ( 46) AACAAGAG 1 chr1:52224150-52224230 ( 16) AACAAGAG 1 chr9:79052070-79052150 ( 27) AACAAGAG 1 chr6:13837413-13837493 ( 38) AGCCAGAG 1 chr10:60038813-60038893 ( 44) AACCACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCAGAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.12623 E= 3.8e-037 181 -1177 -1177 -1177 177 -1177 -293 -1177 -1177 220 -1177 -1177 -174 207 -1177 -1177 181 -1177 -1177 -1177 -1177 -293 215 -1177 181 -1177 -1177 -1177 -1177 -1177 220 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCAGAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 3.8e-037 1.000000 0.000000 0.000000 0.000000 0.971429 0.000000 0.028571 0.000000 0.000000 1.000000 0.000000 0.000000 0.085714 0.914286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.971429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCAGAG MEME-4 regular expression -------------------------------------------------------------------------------- AACCAGAG -------------------------------------------------------------------------------- Time 15.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCTGAC MEME-5 width = 8 sites = 54 llr = 483 E-value = 3.3e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::::28: pos.-specific C 97:a::1a probability G :::::71: matrix T :3a:a::: bits 2.2 * * 2.0 * * 1.8 *** * 1.5 * *** * Relative 1.3 * *** * Entropy 1.1 ******** (12.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCTGAC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:155579748-155579828 51 1.08e-05 ctccatcttg cctctgac catcaagctg chr5:107757591-107757671 52 1.08e-05 ggttcaaatg cctctgac aCATGCATGC chr5:180603741-180603821 58 1.08e-05 ggtttaaatg cctctgac aataagaata chr10:105287487-10528756 29 1.08e-05 ggtttgaaca cctctgac aTAtttctcc chr7:156413063-156413143 36 1.08e-05 ggttcacacg cctctgac aATACTACAA chr11:5388950-5389030 45 1.08e-05 ggttcaaatg cctctgac aAAAGGAACA chr6:15198202-15198282 50 1.08e-05 ggttcaaatg cctctgac aGTTGTACCC chr9:97164515-97164595 22 1.08e-05 ggttcacacg cctctgac agttctaggc chr3:15445631-15445711 65 1.08e-05 ggttcaaatg cctctgac aCCCACTA chr7:4933707-4933787 52 1.08e-05 ggttcaaacg cctctgac caaagaatat chr16:31033602-31033682 13 1.08e-05 ggttcaaatg cctctgac aTAGATACAA chr12:125101110-12510119 27 1.08e-05 ggttcaaaca cctctgac acatccttgg chr9:97114777-97114857 72 1.08e-05 ggctcaaatg cctctgac a chr10:95043327-95043407 40 1.08e-05 ggttcacacg cctctgac aACATGGCAG chr1:65996504-65996584 39 1.08e-05 ggttcagacg cctctgac agctcccacc chr17:56992921-56993001 25 1.08e-05 ggttcaaatg cctctgac aCAATGACCA chr17:65280392-65280472 18 1.08e-05 cgttcaaatg cctctgac agtaacaaag chr2:216482990-216483070 51 1.08e-05 ggttcacacg cctctgac aCAATGTTAC chr9:74569740-74569820 55 1.08e-05 ggttcacaca cctctgac aGTTATGCCA chr1:9681283-9681363 60 1.08e-05 ggttcaaata cctctgac aCTTGGGCTA chr10:50758159-50758239 49 1.08e-05 ggtttaaaca cctctgac ataaccaccc chr10:50751834-50751914 60 1.08e-05 ggttcaaatg cctctgac atatttctcc chr12:125548239-12554831 24 1.08e-05 ggttcaaatg cctctgac attaagacca chr21:46265384-46265464 60 2.46e-05 ggttcgaacg cttctgac aGATGTGTCC chr22:31145417-31145497 41 2.46e-05 ggttaggatg cttctgac aCTGTCACCA chr1:55698993-55699073 19 2.46e-05 ggtttgaatg cttctgac GCCGTGATTG chr2:69961383-69961463 64 2.46e-05 ctccatcttg cttctgac ctcacaagc chr14:94556038-94556118 29 2.46e-05 ggttcaaatg cttctgac atatttaccc chr18:46488814-46488894 35 3.87e-05 ggttcaaact cctctaac aCTCCCAAAC chr1:100001489-100001569 66 4.69e-05 agttcaaatg cctctggc aGAACTA chr7:133776316-133776396 62 4.69e-05 tggttcaatg cctctggc aGTATTTTCA chr16:46685333-46685413 17 5.51e-05 gttagtttgg cctctgcc caggaatgaa chr7:6626181-6626261 7 5.51e-05 ctgcaa cctctgcc tctcaggttc chr2:104086443-104086523 50 6.93e-05 ggttcaaatg actctgac atttcctgcc chr7:77104215-77104295 22 6.93e-05 ggttcaaaca actctgac aATGTCACCC chr4:48081105-48081185 21 8.74e-05 ctccatcttg cttctaac ctccaagctg chr1:45910352-45910432 72 8.74e-05 ctccatcttg cttctaac c chr20:5726872-5726952 44 8.74e-05 ctccatcttg cttctaac ctccaagctg chr1:220448924-220449004 58 8.74e-05 ctccatcttg cttctaac ctccaagctg chr3:172255707-172255787 65 8.74e-05 ctccatcttg cttctaac ctccaagc chr1:236478925-236479005 65 8.74e-05 ctccatcttg cttctaac ctcaaagc chr2:113365409-113365489 57 8.74e-05 ctccatcttg cttctaac ctctaaactg chr1:51687397-51687477 30 8.74e-05 ctccatcttg cttctaac cttcaagcaa chr3:38369929-38370009 71 9.80e-05 gcctagtgac cttctggc ct chr6:15107849-15107929 25 1.09e-04 ACTCCCAGCC CCTCTCAC CACACACTTA chr12:111257117-11125719 52 1.09e-04 ggttcacatc cctctcac aAGGCCTGTT chr5:29194296-29194376 58 1.48e-04 ctccattttg attctgac aactttcaca chr7:30767734-30767814 2 1.59e-04 t cctctacc ttcccccttc chr12:7165621-7165701 62 1.59e-04 ctccatcttg cctctacc ctcacaggct chr18:9021623-9021703 18 2.02e-04 AGAgtggtag actctggc aaagatggct chr1:8998638-8998718 26 2.02e-04 agatggagtc actctggc caaccccagg chr17:73154791-73154871 7 2.30e-04 caaacg tctctgac aCCTGTTCTG chr7:137944534-137944614 70 2.30e-04 ctccatcttg cttctagc ctc chr12:131340817-13134089 65 2.86e-04 TCTATACAGC ATTCTAAC CCATTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:155579748-155579828 1.1e-05 50_[+5]_22 chr5:107757591-107757671 1.1e-05 51_[+5]_21 chr5:180603741-180603821 1.1e-05 57_[+5]_15 chr10:105287487-10528756 1.1e-05 28_[+5]_44 chr7:156413063-156413143 1.1e-05 35_[+5]_37 chr11:5388950-5389030 1.1e-05 44_[+5]_28 chr6:15198202-15198282 1.1e-05 49_[+5]_23 chr9:97164515-97164595 1.1e-05 21_[+5]_51 chr3:15445631-15445711 1.1e-05 64_[+5]_8 chr7:4933707-4933787 1.1e-05 51_[+5]_21 chr16:31033602-31033682 1.1e-05 12_[+5]_60 chr12:125101110-12510119 1.1e-05 26_[+5]_46 chr9:97114777-97114857 1.1e-05 71_[+5]_1 chr10:95043327-95043407 1.1e-05 39_[+5]_33 chr1:65996504-65996584 1.1e-05 38_[+5]_34 chr17:56992921-56993001 1.1e-05 24_[+5]_48 chr17:65280392-65280472 1.1e-05 17_[+5]_55 chr2:216482990-216483070 1.1e-05 50_[+5]_22 chr9:74569740-74569820 1.1e-05 54_[+5]_18 chr1:9681283-9681363 1.1e-05 59_[+5]_13 chr10:50758159-50758239 1.1e-05 48_[+5]_24 chr10:50751834-50751914 1.1e-05 59_[+5]_13 chr12:125548239-12554831 1.1e-05 23_[+5]_49 chr21:46265384-46265464 2.5e-05 59_[+5]_13 chr22:31145417-31145497 2.5e-05 40_[+5]_32 chr1:55698993-55699073 2.5e-05 18_[+5]_54 chr2:69961383-69961463 2.5e-05 63_[+5]_9 chr14:94556038-94556118 2.5e-05 28_[+5]_44 chr18:46488814-46488894 3.9e-05 34_[+5]_38 chr1:100001489-100001569 4.7e-05 65_[+5]_7 chr7:133776316-133776396 4.7e-05 61_[+5]_11 chr16:46685333-46685413 5.5e-05 16_[+5]_56 chr7:6626181-6626261 5.5e-05 6_[+5]_66 chr2:104086443-104086523 6.9e-05 49_[+5]_23 chr7:77104215-77104295 6.9e-05 21_[+5]_51 chr4:48081105-48081185 8.7e-05 20_[+5]_52 chr1:45910352-45910432 8.7e-05 71_[+5]_1 chr20:5726872-5726952 8.7e-05 43_[+5]_29 chr1:220448924-220449004 8.7e-05 57_[+5]_15 chr3:172255707-172255787 8.7e-05 64_[+5]_8 chr1:236478925-236479005 8.7e-05 64_[+5]_8 chr2:113365409-113365489 8.7e-05 56_[+5]_16 chr1:51687397-51687477 8.7e-05 29_[+5]_43 chr3:38369929-38370009 9.8e-05 70_[+5]_2 chr6:15107849-15107929 0.00011 24_[+5]_48 chr12:111257117-11125719 0.00011 51_[+5]_21 chr5:29194296-29194376 0.00015 57_[+5]_15 chr7:30767734-30767814 0.00016 1_[+5]_71 chr12:7165621-7165701 0.00016 61_[+5]_11 chr18:9021623-9021703 0.0002 17_[+5]_55 chr1:8998638-8998718 0.0002 25_[+5]_47 chr17:73154791-73154871 0.00023 6_[+5]_66 chr7:137944534-137944614 0.00023 69_[+5]_3 chr12:131340817-13134089 0.00029 64_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCTGAC width=8 seqs=54 chr3:155579748-155579828 ( 51) CCTCTGAC 1 chr5:107757591-107757671 ( 52) CCTCTGAC 1 chr5:180603741-180603821 ( 58) CCTCTGAC 1 chr10:105287487-10528756 ( 29) CCTCTGAC 1 chr7:156413063-156413143 ( 36) CCTCTGAC 1 chr11:5388950-5389030 ( 45) CCTCTGAC 1 chr6:15198202-15198282 ( 50) CCTCTGAC 1 chr9:97164515-97164595 ( 22) CCTCTGAC 1 chr3:15445631-15445711 ( 65) CCTCTGAC 1 chr7:4933707-4933787 ( 52) CCTCTGAC 1 chr16:31033602-31033682 ( 13) CCTCTGAC 1 chr12:125101110-12510119 ( 27) CCTCTGAC 1 chr9:97114777-97114857 ( 72) CCTCTGAC 1 chr10:95043327-95043407 ( 40) CCTCTGAC 1 chr1:65996504-65996584 ( 39) CCTCTGAC 1 chr17:56992921-56993001 ( 25) CCTCTGAC 1 chr17:65280392-65280472 ( 18) CCTCTGAC 1 chr2:216482990-216483070 ( 51) CCTCTGAC 1 chr9:74569740-74569820 ( 55) CCTCTGAC 1 chr1:9681283-9681363 ( 60) CCTCTGAC 1 chr10:50758159-50758239 ( 49) CCTCTGAC 1 chr10:50751834-50751914 ( 60) CCTCTGAC 1 chr12:125548239-12554831 ( 24) CCTCTGAC 1 chr21:46265384-46265464 ( 60) CTTCTGAC 1 chr22:31145417-31145497 ( 41) CTTCTGAC 1 chr1:55698993-55699073 ( 19) CTTCTGAC 1 chr2:69961383-69961463 ( 64) CTTCTGAC 1 chr14:94556038-94556118 ( 29) CTTCTGAC 1 chr18:46488814-46488894 ( 35) CCTCTAAC 1 chr1:100001489-100001569 ( 66) CCTCTGGC 1 chr7:133776316-133776396 ( 62) CCTCTGGC 1 chr16:46685333-46685413 ( 17) CCTCTGCC 1 chr7:6626181-6626261 ( 7) CCTCTGCC 1 chr2:104086443-104086523 ( 50) ACTCTGAC 1 chr7:77104215-77104295 ( 22) ACTCTGAC 1 chr4:48081105-48081185 ( 21) CTTCTAAC 1 chr1:45910352-45910432 ( 72) CTTCTAAC 1 chr20:5726872-5726952 ( 44) CTTCTAAC 1 chr1:220448924-220449004 ( 58) CTTCTAAC 1 chr3:172255707-172255787 ( 65) CTTCTAAC 1 chr1:236478925-236479005 ( 65) CTTCTAAC 1 chr2:113365409-113365489 ( 57) CTTCTAAC 1 chr1:51687397-51687477 ( 30) CTTCTAAC 1 chr3:38369929-38370009 ( 71) CTTCTGGC 1 chr6:15107849-15107929 ( 25) CCTCTCAC 1 chr12:111257117-11125719 ( 52) CCTCTCAC 1 chr5:29194296-29194376 ( 58) ATTCTGAC 1 chr7:30767734-30767814 ( 2) CCTCTACC 1 chr12:7165621-7165701 ( 62) CCTCTACC 1 chr18:9021623-9021703 ( 18) ACTCTGGC 1 chr1:8998638-8998718 ( 26) ACTCTGGC 1 chr17:73154791-73154871 ( 7) TCTCTGAC 1 chr7:137944534-137944614 ( 70) CTTCTAGC 1 chr12:131340817-13134089 ( 65) ATTCTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.59303 E= 3.3e-036 -136 200 -1240 -391 -1240 166 -1240 18 -1240 -1240 -1240 184 -1240 220 -1240 -1240 -1240 -1240 -1240 184 -25 -255 173 -1240 151 -155 -97 -1240 -1240 220 -1240 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 3.3e-036 0.111111 0.870370 0.000000 0.018519 0.000000 0.685185 0.000000 0.314815 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.240741 0.037037 0.722222 0.000000 0.814815 0.074074 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-5 regular expression -------------------------------------------------------------------------------- C[CT]TCT[GA]AC -------------------------------------------------------------------------------- Time 18.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:48977665-48977745 5.70e-03 30_[+2(1.42e-05)]_11_[+2(1.42e-05)]_\ 23 chr1:84836654-84836734 7.44e-02 40_[+1(3.41e-05)]_32 chr6:135645820-135645900 5.50e-02 80 chr2:11835916-11835996 7.27e-03 34_[+2(1.42e-05)]_38 chr12:125548239-12554831 9.97e-04 9_[+3(1.36e-05)]_6_[+5(1.08e-05)]_\ 49 chr18:29390463-29390543 1.54e-02 64_[+2(1.42e-05)]_8 chr5:29194296-29194376 4.01e-03 45_[+2(1.42e-05)]_27 chr10:50751834-50751914 3.70e-06 34_[+1(7.90e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_13 chr7:133776316-133776396 3.32e-06 37_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 5_[+5(4.69e-05)]_11 chr1:51687397-51687477 3.65e-06 17_[+2(3.28e-05)]_4_[+5(8.74e-05)]_\ 9_[+1(1.47e-05)]_26 chr3:5769927-5770007 4.51e-02 3_[+1(1.47e-05)]_69 chr15:68270176-68270256 1.45e-03 28_[+1(7.90e-05)]_13_[+2(1.42e-05)]_\ 23 chr4:40580111-40580191 6.59e-01 80 chr16:8165956-8166036 3.10e-02 65_[+2(3.28e-05)]_7 chr1:84847892-84847972 2.29e-02 37_[+1(3.41e-05)]_35 chr9:126903376-126903456 4.31e-04 2_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 61 chr9:128004805-128004885 3.28e-02 58_[+1(9.03e-05)]_14 chr2:113365409-113365489 1.48e-03 44_[+2(1.42e-05)]_4_[+5(8.74e-05)]_\ 16 chr17:56991393-56991473 2.01e-02 42_[+1(1.47e-05)]_30 chr1:236478925-236479005 8.24e-04 52_[+2(1.42e-05)]_4_[+5(8.74e-05)]_\ 8 chr10:50758159-50758239 7.20e-07 23_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_24 chr7:36315633-36315713 2.06e-04 40_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 23 chr1:9681283-9681363 5.59e-06 34_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_13 chr3:15150613-15150693 4.84e-02 9_[+2(9.77e-05)]_63 chr17:55051586-55051666 2.43e-04 9_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 52 chr11:33216181-33216261 1.23e-02 17_[+2(1.42e-05)]_55 chr14:94556038-94556118 4.61e-06 3_[+1(1.47e-05)]_3_[+3(1.36e-05)]_6_\ [+5(2.46e-05)]_44 chr18:8934031-8934111 3.54e-02 33_[+1(1.47e-05)]_39 chr9:74569740-74569820 5.01e-07 29_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_18 chr2:216482990-216483070 2.27e-06 25_[+1(7.90e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_22 chr15:75433016-75433096 3.48e-01 80 chr12:111257117-11125719 2.53e-05 26_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 35 chr16:53464459-53464539 3.21e-05 18_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 45 chr2:69961383-69961463 1.96e-04 51_[+2(1.42e-05)]_4_[+5(2.46e-05)]_\ 9 chr10:60038813-60038893 9.76e-03 43_[+4(6.10e-05)]_20_[+1(5.97e-05)]_\ 1 chr17:65280392-65280472 9.47e-04 3_[+3(9.00e-05)]_6_[+5(1.08e-05)]_\ 55 chr2:202440857-202440937 5.05e-02 35_[+2(3.28e-05)]_10_[+2(1.42e-05)]_\ 19 chr9:139675613-139675693 2.15e-02 65_[+1(3.41e-05)]_7 chr7:6626181-6626261 2.64e-03 6_[+5(5.51e-05)]_1_[+3(5.54e-05)]_\ 57 chr17:40809994-40810074 1.35e-02 41_[+2(1.42e-05)]_31 chr3:172255707-172255787 1.19e-03 52_[+2(1.42e-05)]_4_[+5(8.74e-05)]_\ 8 chr17:56992921-56993001 6.20e-05 10_[+3(1.36e-05)]_6_[+5(1.08e-05)]_\ 48 chr13:96010268-96010348 2.39e-02 31_[+1(1.47e-05)]_41 chr12:9184954-9185034 1.19e-02 54_[+2(1.42e-05)]_18 chr20:23116255-23116335 1.20e-03 38_[+1(9.03e-05)]_34 chr12:102261590-10226167 1.23e-01 25_[+1(3.41e-05)]_47 chr3:21557064-21557144 3.02e-04 16_[+4(7.61e-05)]_15_[+2(1.42e-05)]_\ 33 chr1:65996504-65996584 3.50e-06 13_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_34 chr19:58321704-58321784 1.47e-02 55_[+2(1.42e-05)]_17 chr16:20897788-20897868 1.36e-02 33_[+1(3.41e-05)]_39 chr1:220448924-220449004 4.25e-04 45_[+2(1.42e-05)]_4_[+5(8.74e-05)]_\ 15 chr3:171695321-171695401 4.33e-01 80 chr5:179946353-179946433 3.15e-01 10_[+2(7.95e-05)]_62 chr10:95043327-95043407 1.79e-06 14_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_33 chr12:31891668-31891748 3.04e-02 80 chr7:137944534-137944614 4.90e-04 57_[+2(1.42e-05)]_15 chr9:79052070-79052150 1.94e-03 26_[+4(3.47e-05)]_1_[+2(3.28e-05)]_\ 37 chr6:110896196-110896276 1.54e-04 5_[+2(5.46e-05)]_12_[+1(3.41e-05)]_\ 47 chr19:51252900-51252980 1.13e-03 39_[+2(1.42e-05)]_33 chr7:45028883-45028963 1.41e-02 25_[+1(1.47e-05)]_47 chr14:76686377-76686457 3.84e-03 34_[+2(1.42e-05)]_38 chr1:55698993-55699073 6.89e-05 4_[+3(1.36e-05)]_6_[+5(2.46e-05)]_\ 54 chr12:131340817-13134089 2.03e-03 20_[+3(4.15e-05)]_52 chr19:30134620-30134700 5.78e-04 35_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 28 chr12:47620158-47620238 1.28e-02 13_[+1(1.47e-05)]_59 chr6:14394400-14394480 8.64e-03 80 chr1:16843643-16843723 1.83e-03 21_[+1(1.47e-05)]_17_[+3(4.15e-05)]_\ 26 chr6:150591967-150592047 7.27e-01 80 chr14:103609979-10361005 1.51e-06 46_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 17 chr11:62196832-62196912 7.26e-02 20_[+1(1.47e-05)]_52 chr9:97114777-97114857 9.00e-06 46_[+1(1.47e-05)]_3_[+3(4.15e-05)]_\ 6_[+5(1.08e-05)]_1 chr17:73154791-73154871 2.03e-01 80 chr22:21447696-21447776 8.10e-01 80 chr4:37672865-37672945 1.01e-02 30_[+2(3.28e-05)]_42 chr20:21637450-21637530 3.04e-01 80 chr7:25967410-25967490 2.06e-02 18_[+1(1.47e-05)]_54 chr12:125101110-12510119 4.66e-06 1_[+1(1.47e-05)]_3_[+3(1.36e-05)]_6_\ [+5(1.08e-05)]_46 chr12:91681675-91681755 3.71e-02 8_[+1(3.41e-05)]_64 chr17:13379037-13379117 1.94e-02 15_[+2(1.42e-05)]_57 chr8:130091053-130091133 7.64e-01 80 chrX:135971590-135971670 4.61e-02 80 chr5:78205238-78205318 1.12e-02 14_[+2(3.28e-05)]_58 chr7:100795401-100795481 9.37e-02 80 chr1:65690982-65691062 7.47e-01 80 chr22:31145417-31145497 5.28e-06 15_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(2.46e-05)]_32 chr16:53453063-53453143 2.44e-03 61_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 2 chr7:143109580-143109660 1.04e-03 17_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 46 chr6:13837413-13837493 7.23e-03 37_[+4(4.61e-05)]_35 chr2:112721274-112721354 4.07e-02 38_[+1(3.41e-05)]_34 chr6:107305345-107305425 7.68e-03 26_[+1(1.47e-05)]_46 chr6:158130759-158130839 6.35e-03 17_[+4(1.50e-05)]_55 chr12:32207633-32207713 1.08e-03 34_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 29 chr1:173391895-173391975 5.69e-01 80 chr15:68344414-68344494 4.43e-02 80 chr15:49481334-49481414 1.11e-02 3_[+2(1.42e-05)]_69 chr3:141371306-141371386 2.62e-01 80 chr9:79041103-79041183 5.09e-02 51_[+1(1.47e-05)]_21 chr1:68388904-68388984 3.16e-03 21_[+4(7.61e-05)]_1_[+2(1.42e-05)]_\ 42 chr12:48245509-48245589 1.83e-01 80 chr5:131076380-131076460 3.51e-02 5_[+2(3.28e-05)]_67 chr8:125283364-125283444 5.54e-01 80 chr2:189192415-189192495 1.13e-02 80 chr6:2926853-2926933 3.92e-03 12_[+1(1.47e-05)]_60 chr1:150681687-150681767 9.82e-03 37_[+2(1.42e-05)]_35 chr3:156486320-156486400 2.01e-02 62_[+2(1.42e-05)]_10 chr16:31033602-31033682 1.76e-02 12_[+5(1.08e-05)]_60 chr1:38026185-38026265 1.21e-02 7_[+1(3.41e-05)]_65 chr1:8998638-8998718 3.17e-05 15_[+1(1.47e-05)]_57 chr20:5726872-5726952 1.51e-03 31_[+2(1.42e-05)]_4_[+5(8.74e-05)]_\ 29 chr14:65465343-65465423 3.49e-03 38_[+2(1.42e-05)]_34 chr3:58692272-58692352 5.31e-04 42_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 21 chr10:76194540-76194620 6.39e-01 80 chr1:203748147-203748227 5.51e-04 9_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 54 chr7:4933707-4933787 1.36e-06 26_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_21 chr19:49396050-49396130 7.90e-02 26_[+1(3.41e-05)]_46 chr1:67381028-67381108 1.87e-02 33_[+1(1.47e-05)]_39 chr1:185310710-185310790 5.16e-02 7_[+2(1.42e-05)]_65 chr15:34669241-34669321 6.90e-04 31_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 32 chr12:127642067-12764214 6.59e-01 80 chr2:48346168-48346248 6.38e-02 80 chr7:106485212-106485292 2.30e-02 37_[+1(1.47e-05)]_35 chr3:15445631-15445711 6.09e-06 39_[+1(3.41e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_8 chr9:97164515-97164595 1.91e-04 7_[+3(1.36e-05)]_6_[+5(1.08e-05)]_\ 51 chr3:47528961-47529041 5.07e-03 18_[+1(1.47e-05)]_54 chr3:119358492-119358572 2.13e-02 16_[+1(1.47e-05)]_56 chr1:45910352-45910432 1.64e-04 59_[+2(1.42e-05)]_4_[+5(8.74e-05)]_\ 1 chr16:46685333-46685413 2.81e-04 16_[+5(5.51e-05)]_36_[+1(1.47e-05)]_\ 12 chr6:26491956-26492036 7.10e-03 57_[+1(3.41e-05)]_15 chr1:116820561-116820641 2.12e-02 21_[+2(1.42e-05)]_51 chr17:77066511-77066591 6.96e-03 41_[+2(1.42e-05)]_31 chr16:10422360-10422440 8.29e-02 [+2(7.95e-05)]_72 chr18:9021623-9021703 9.25e-03 56_[+3(7.65e-05)]_16 chr8:30060517-30060597 2.44e-02 18_[+1(3.41e-05)]_10_[+1(1.47e-05)]_\ 36 chr1:36482425-36482505 1.87e-03 39_[+2(1.42e-05)]_33 chr6:161632035-161632115 9.65e-03 59_[+1(1.47e-05)]_13 chr1:100001489-100001569 3.19e-04 40_[+1(1.47e-05)]_17_[+5(4.69e-05)]_\ 7 chr11:67278447-67278527 5.12e-04 56_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 5 chr1:26810573-26810653 5.76e-04 44_[+3(1.36e-05)]_28 chr12:7165621-7165701 6.32e-04 49_[+2(1.42e-05)]_23 chr1:17219547-17219627 1.92e-03 43_[+2(1.42e-05)]_29 chr9:38252707-38252787 6.69e-05 34_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 29 chr3:38369929-38370009 1.98e-02 70_[+5(9.80e-05)]_2 chr1:95078531-95078611 1.02e-03 20_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 43 chr19:21803932-21804012 1.60e-02 37_[+1(3.41e-05)]_35 chr11:73239205-73239285 4.33e-06 44_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 19 chr1:52224150-52224230 1.31e-03 15_[+4(3.47e-05)]_1_[+2(1.42e-05)]_\ 48 chr11:116821062-11682114 3.17e-03 36_[+1(3.41e-05)]_36 chr1:25576892-25576972 1.02e-01 18_[+3(5.54e-05)]_54 chr5:71579345-71579425 4.49e-01 80 chr7:77104215-77104295 3.54e-03 7_[+3(1.36e-05)]_6_[+5(6.93e-05)]_\ 51 chr6:15198202-15198282 1.50e-06 24_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_23 chr22:28985269-28985349 5.57e-03 17_[+1(3.41e-05)]_55 chr13:29132793-29132873 1.85e-01 80 chr18:47956115-47956195 1.33e-03 9_[+1(3.41e-05)]_63 chr10:76006421-76006501 2.12e-02 63_[+2(1.42e-05)]_9 chr6:27743093-27743173 8.90e-02 40_[+1(3.41e-05)]_32 chr6:49690217-49690297 5.05e-04 56_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 5 chr16:28550728-28550808 2.33e-02 45_[+1(3.41e-05)]_27 chr1:28691465-28691545 7.28e-04 71_[+2(1.42e-05)]_1 chr17:53421387-53421467 7.68e-01 80 chr7:77507965-77508045 1.11e-02 45_[+1(1.47e-05)]_27 chr6:36852534-36852614 7.14e-03 24_[+1(3.41e-05)]_48 chr5:85868798-85868878 6.70e-04 27_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 36 chr11:5388950-5389030 3.23e-06 19_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_28 chr8:102921088-102921168 3.53e-02 36_[+1(3.41e-05)]_36 chr21:30604583-30604663 6.51e-02 35_[+1(1.47e-05)]_37 chr7:156413063-156413143 1.20e-06 10_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_37 chr12:68594672-68594752 7.76e-01 80 chr19:43949708-43949788 2.78e-02 40_[+1(3.41e-05)]_32 chr10:105287487-10528756 1.53e-07 3_[+1(1.47e-05)]_3_[+3(1.36e-05)]_6_\ [+5(1.08e-05)]_44 chr4:8244707-8244787 1.96e-04 51_[+4(1.50e-05)]_21 chr18:9874859-9874939 8.68e-01 80 chr10:6047307-6047387 1.33e-03 40_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 23 chr12:92230664-92230744 2.56e-02 16_[+2(1.42e-05)]_56 chr11:76522448-76522528 6.99e-01 80 chr7:25883224-25883304 2.03e-02 36_[+3(7.65e-05)]_36 chr6:134343853-134343933 6.01e-02 39_[+1(3.41e-05)]_23_[+1(3.41e-05)]_\ 2 chr15:69241628-69241708 1.01e-01 16_[+2(1.42e-05)]_56 chr21:45633730-45633810 4.86e-04 44_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 19 chr5:180603741-180603821 2.67e-06 32_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_15 chr3:9686068-9686148 2.17e-02 14_[+1(1.47e-05)]_58 chr15:68316163-68316243 6.18e-04 30_[+1(1.47e-05)]_17_[+3(4.15e-05)]_\ 17 chr5:87547388-87547468 5.82e-03 80 chr1:11748755-11748835 2.90e-04 [+4(1.50e-05)]_72 chr1:113360367-113360447 6.89e-01 80 chr14:32490178-32490258 1.52e-01 80 chr1:67865463-67865543 2.17e-02 2_[+2(3.28e-05)]_70 chr18:46488814-46488894 1.85e-06 9_[+1(1.47e-05)]_3_[+3(1.36e-05)]_6_\ [+5(3.87e-05)]_38 chr5:77074543-77074623 9.03e-02 61_[+1(5.97e-05)]_11 chrX:41249274-41249354 7.03e-01 80 chr1:157298070-157298150 1.42e-02 50_[+1(1.47e-05)]_22 chr7:8362412-8362492 3.61e-03 55_[+1(3.41e-05)]_17 chr2:104086443-104086523 8.78e-06 24_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(6.93e-05)]_23 chr12:25429731-25429811 5.30e-01 80 chr18:53615330-53615410 6.59e-04 16_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 47 chr19:48753715-48753795 3.90e-02 50_[+2(5.46e-05)]_22 chr14:23678541-23678621 2.39e-01 80 chr6:15210526-15210606 5.17e-04 36_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 27 chr5:107757591-107757671 3.44e-06 26_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(1.08e-05)]_21 chr17:62926158-62926238 7.03e-02 45_[+2(1.42e-05)]_27 chr2:112337260-112337340 4.71e-01 80 chr12:11774855-11774935 1.84e-03 45_[+4(3.47e-05)]_1_[+2(3.28e-05)]_\ 18 chr2:236352363-236352443 5.80e-04 7_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 56 chr12:46870099-46870179 1.54e-04 57_[+1(1.47e-05)]_3_[+3(4.15e-05)]_\ 4 chr12:103066499-10306657 3.83e-02 58_[+1(3.41e-05)]_14 chr6:110176790-110176870 2.17e-03 33_[+1(1.47e-05)]_13_[+2(9.77e-05)]_\ 18 chr7:13889229-13889309 4.74e-02 80 chr16:29781023-29781103 3.36e-03 12_[+2(1.42e-05)]_60 chr5:18792334-18792414 2.31e-01 80 chr3:32098176-32098256 1.90e-03 69_[+4(1.50e-05)]_3 chr6:15107849-15107929 1.33e-01 80 chr12:58039004-58039084 1.57e-01 80 chr8:123842165-123842245 8.15e-02 70_[+4(1.50e-05)]_2 chr4:48081105-48081185 2.12e-03 8_[+2(1.42e-05)]_4_[+5(8.74e-05)]_\ 52 chr17:25435137-25435217 6.67e-02 35_[+1(1.47e-05)]_37 chr19:2954197-2954277 1.78e-05 30_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 33 chr3:155579748-155579828 1.18e-04 38_[+2(3.28e-05)]_4_[+5(1.08e-05)]_\ 22 chr4:138889154-138889234 1.43e-02 20_[+1(1.47e-05)]_52 chr15:29250479-29250559 1.90e-01 80 chr10:12486205-12486285 2.44e-01 80 chr1:46409043-46409123 3.54e-02 10_[+2(1.42e-05)]_62 chr21:44356601-44356681 7.98e-04 66_[+2(1.42e-05)]_6 chr3:24538687-24538767 1.65e-01 80 chr11:33316487-33316567 1.24e-02 38_[+1(3.41e-05)]_34 chr9:99748092-99748172 8.42e-04 24_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 39 chr9:102796255-102796335 1.83e-03 64_[+4(1.50e-05)]_8 chr7:23634925-23635005 8.92e-03 55_[+1(3.41e-05)]_17 chr1:142886554-142886634 8.12e-03 34_[+1(3.41e-05)]_38 chr15:40196483-40196563 5.19e-04 25_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 36 chr11:64252211-64252291 2.96e-02 72_[+1(1.47e-05)] chr1:228312993-228313073 4.21e-02 52_[+1(1.47e-05)]_20 chr19:46081292-46081372 1.13e-02 21_[+2(1.42e-05)]_51 chr7:92314965-92315045 1.42e-02 9_[+1(3.41e-05)]_63 chr8:42650487-42650567 1.40e-03 43_[+1(3.41e-05)]_29 chr6:30805795-30805875 5.30e-01 80 chr6:164361905-164361985 2.57e-04 3_[+4(1.50e-05)]_1_[+2(1.42e-05)]_\ 60 chr6:26042374-26042454 3.40e-01 80 chr3:101350885-101350965 1.20e-03 63_[+2(1.42e-05)]_9 chr9:139684121-139684201 2.63e-02 37_[+1(3.41e-05)]_35 chr2:20701836-20701916 3.36e-02 49_[+1(3.41e-05)]_23 chr21:46265384-46265464 7.83e-06 34_[+1(1.47e-05)]_3_[+3(1.36e-05)]_\ 6_[+5(2.46e-05)]_13 chr19:21880691-21880771 5.14e-03 2_[+1(3.41e-05)]_70 chr5:77074343-77074423 7.03e-03 18_[+4(9.57e-05)]_42_[+2(3.28e-05)]_\ 4 chr7:156716277-156716357 3.43e-02 15_[+1(1.47e-05)]_57 chr10:17045897-17045977 6.95e-03 10_[+2(7.95e-05)]_7_[+4(9.57e-05)]_\ 47 chr7:30767734-30767814 2.16e-05 34_[+4(1.50e-05)]_1_[+2(3.28e-05)]_\ 29 chr3:195784686-195784766 1.05e-01 44_[+1(3.41e-05)]_28 chr12:31468362-31468442 4.04e-03 55_[+5(2.46e-05)]_17 chr2:223688027-223688107 6.01e-03 37_[+1(1.47e-05)]_35 chr11:67778907-67778987 8.52e-02 38_[+2(7.95e-05)]_34 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************