******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PTRF.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:3774298-3774378 1.0000 80 chr10:26666643-26666723 1.0000 80 chr4:37672879-37672959 1.0000 80 chr7:36277949-36278029 1.0000 80 chr3:4498610-4498690 1.0000 80 chr7:25883239-25883319 1.0000 80 chr7:36315630-36315710 1.0000 80 chrX:135971599-135971679 1.0000 80 chr5:131758047-131758127 1.0000 80 chr6:41186900-41186980 1.0000 80 chr7:129859187-129859267 1.0000 80 chr10:119020482-11902056 1.0000 80 chr6:135645869-135645949 1.0000 80 chr1:9681233-9681313 1.0000 80 chr4:8360174-8360254 1.0000 80 chr11:76522429-76522509 1.0000 80 chr18:9021611-9021691 1.0000 80 chr3:152950029-152950109 1.0000 80 chr7:77507929-77508009 1.0000 80 chr5:177903073-177903153 1.0000 80 chr18:9259325-9259405 1.0000 80 chr1:235049302-235049382 1.0000 80 chr18:9053993-9054073 1.0000 80 chr15:75433044-75433124 1.0000 80 chr17:55051581-55051661 1.0000 80 chr14:94556015-94556095 1.0000 80 chr7:75436954-75437034 1.0000 80 chr8:103539790-103539870 1.0000 80 chr6:2926826-2926906 1.0000 80 chr10:27488963-27489043 1.0000 80 chr9:126903366-126903446 1.0000 80 chr18:8934050-8934130 1.0000 80 chr9:38252679-38252759 1.0000 80 chr6:112125163-112125243 1.0000 80 chr1:54773201-54773281 1.0000 80 chr3:170474988-170475068 1.0000 80 chr6:42920284-42920364 1.0000 80 chr19:51252935-51253015 1.0000 80 chr7:106091772-106091852 1.0000 80 chr3:15633603-15633683 1.0000 80 chrX:153730611-153730691 1.0000 80 chr20:32316442-32316522 1.0000 80 chr17:73154775-73154855 1.0000 80 chr16:8165969-8166049 1.0000 80 chr9:128455945-128456025 1.0000 80 chr18:9884752-9884832 1.0000 80 chr9:79052060-79052140 1.0000 80 chr8:129044896-129044976 1.0000 80 chr6:74234288-74234368 1.0000 80 chr17:62926153-62926233 1.0000 80 chr10:23329095-23329175 1.0000 80 chr3:176065655-176065735 1.0000 80 chr1:145030484-145030564 1.0000 80 chr2:15392014-15392094 1.0000 80 chr3:114875351-114875431 1.0000 80 chr7:140186614-140186694 1.0000 80 chr6:107305347-107305427 1.0000 80 chr5:19241960-19242040 1.0000 80 chr12:46870134-46870214 1.0000 80 chr15:63683029-63683109 1.0000 80 chr8:129188362-129188442 1.0000 80 chr2:216482976-216483056 1.0000 80 chr1:12173944-12174024 1.0000 80 chr8:128976035-128976115 1.0000 80 chr4:8244726-8244806 1.0000 80 chr16:65798810-65798890 1.0000 80 chr9:131200162-131200242 1.0000 80 chr13:96010320-96010400 1.0000 80 chr3:112464824-112464904 1.0000 80 chr19:21318002-21318082 1.0000 80 chr3:24538715-24538795 1.0000 80 chr5:18792295-18792375 1.0000 80 chr1:113395621-113395701 1.0000 80 chr16:46975866-46975946 1.0000 80 chr21:35338098-35338178 1.0000 80 chrX:41249322-41249402 1.0000 80 chr2:216485380-216485460 1.0000 80 chr16:11727200-11727280 1.0000 80 chr16:31033604-31033684 1.0000 80 chr2:238848562-238848642 1.0000 80 chr7:45028877-45028957 1.0000 80 chr1:145028934-145029014 1.0000 80 chr18:9874886-9874966 1.0000 80 chr8:130713277-130713357 1.0000 80 chr6:107278966-107279046 1.0000 80 chrX:120372101-120372181 1.0000 80 chr2:159991706-159991786 1.0000 80 chr17:73319899-73319979 1.0000 80 chr6:158130715-158130795 1.0000 80 chr11:62196837-62196917 1.0000 80 chr1:52224140-52224220 1.0000 80 chr3:112455729-112455809 1.0000 80 chr9:97114796-97114876 1.0000 80 chr3:13053381-13053461 1.0000 80 chr3:176241864-176241944 1.0000 80 chr9:79041113-79041193 1.0000 80 chr15:58373363-58373443 1.0000 80 chr5:149834197-149834277 1.0000 80 chr6:135554966-135555046 1.0000 80 chr9:132645312-132645392 1.0000 80 chr1:28691516-28691596 1.0000 80 chr1:157298057-157298137 1.0000 80 chr8:33341556-33341636 1.0000 80 chr8:64068039-64068119 1.0000 80 chr5:68387765-68387845 1.0000 80 chr14:51404672-51404752 1.0000 80 chr9:130763128-130763208 1.0000 80 chr20:31160215-31160295 1.0000 80 chr17:48809592-48809672 1.0000 80 chr12:26608990-26609070 1.0000 80 chr7:105824579-105824659 1.0000 80 chr7:75434186-75434266 1.0000 80 chr20:23110729-23110809 1.0000 80 chr3:186605603-186605683 1.0000 80 chr5:122200689-122200769 1.0000 80 chr1:113360336-113360416 1.0000 80 chr10:99177819-99177899 1.0000 80 chr20:5726856-5726936 1.0000 80 chr2:55506437-55506517 1.0000 80 chr3:4926726-4926806 1.0000 80 chr1:17219483-17219563 1.0000 80 chr8:101510681-101510761 1.0000 80 chr2:43101436-43101516 1.0000 80 chr9:90082237-90082317 1.0000 80 chr2:171629870-171629950 1.0000 80 chr10:4946045-4946125 1.0000 80 chr1:110457517-110457597 1.0000 80 chr3:112488663-112488743 1.0000 80 chr1:11748740-11748820 1.0000 80 chr1:11949982-11950062 1.0000 80 chr2:48346199-48346279 1.0000 80 chr19:39970113-39970193 1.0000 80 chr8:96104045-96104125 1.0000 80 chr13:96037805-96037885 1.0000 80 chr15:81407538-81407618 1.0000 80 chr11:475123-475203 1.0000 80 chr1:236478925-236479005 1.0000 80 chr3:58022553-58022633 1.0000 80 chr15:58782054-58782134 1.0000 80 chr6:28655153-28655233 1.0000 80 chr21:44536108-44536188 1.0000 80 chr3:172255720-172255800 1.0000 80 chrX:2701018-2701098 1.0000 80 chr7:133767636-133767716 1.0000 80 chr7:92056629-92056709 1.0000 80 chr2:47103265-47103345 1.0000 80 chr11:67278454-67278534 1.0000 80 chr16:47180226-47180306 1.0000 80 chr6:34688086-34688166 1.0000 80 chr17:47312012-47312092 1.0000 80 chr15:68212987-68213067 1.0000 80 chr17:76983862-76983942 1.0000 80 chr20:347674-347754 1.0000 80 chr1:100001493-100001573 1.0000 80 chr9:74569738-74569818 1.0000 80 chr19:21803962-21804042 1.0000 80 chr11:33216127-33216207 1.0000 80 chr7:106485192-106485272 1.0000 80 chr7:124605779-124605859 1.0000 80 chr2:174217489-174217569 1.0000 80 chr6:15198185-15198265 1.0000 80 chr9:102796287-102796367 1.0000 80 chr12:132036383-13203646 1.0000 80 chr4:39033388-39033468 1.0000 80 chr1:223972415-223972495 1.0000 80 chr7:135529863-135529943 1.0000 80 chrX:16604222-16604302 1.0000 80 chr7:158647398-158647478 1.0000 80 chr15:23091456-23091536 1.0000 80 chr4:38319000-38319080 1.0000 80 chr12:131926652-13192673 1.0000 80 chr22:31145408-31145488 1.0000 80 chr1:228313030-228313110 1.0000 80 chr1:185310668-185310748 1.0000 80 chr7:22864515-22864595 1.0000 80 chr11:10680425-10680505 1.0000 80 chr21:19062538-19062618 1.0000 80 chr5:149322906-149322986 1.0000 80 chr12:47667087-47667167 1.0000 80 chr16:56496076-56496156 1.0000 80 chr3:9686021-9686101 1.0000 80 chr7:135625275-135625355 1.0000 80 chr19:45054404-45054484 1.0000 80 chr2:236352403-236352483 1.0000 80 chr1:173468973-173469053 1.0000 80 chr7:155466313-155466393 1.0000 80 chr8:71384955-71385035 1.0000 80 chr20:30093797-30093877 1.0000 80 chr7:106927838-106927918 1.0000 80 chr22:28940428-28940508 1.0000 80 chr1:109060085-109060165 1.0000 80 chr5:114720405-114720485 1.0000 80 chr17:58753501-58753581 1.0000 80 chr1:244465672-244465752 1.0000 80 chr6:26550539-26550619 1.0000 80 chr15:75462720-75462800 1.0000 80 chr22:23781924-23782004 1.0000 80 chr9:139675631-139675711 1.0000 80 chr2:69961395-69961475 1.0000 80 chr10:99387707-99387787 1.0000 80 chr1:235573938-235574018 1.0000 80 chr6:158174092-158174172 1.0000 80 chr6:107299395-107299475 1.0000 80 chr10:105996091-10599617 1.0000 80 chr1:16843690-16843770 1.0000 80 chr10:17605593-17605673 1.0000 80 chr22:28985251-28985331 1.0000 80 chr12:26905145-26905225 1.0000 80 chr3:138565824-138565904 1.0000 80 chr12:109013306-10901338 1.0000 80 chr19:16587494-16587574 1.0000 80 chr10:71170381-71170461 1.0000 80 chr3:178750844-178750924 1.0000 80 chr1:211698600-211698680 1.0000 80 chr5:154319113-154319193 1.0000 80 chr1:150681685-150681765 1.0000 80 chr14:102531136-10253121 1.0000 80 chr6:30805792-30805872 1.0000 80 chr2:68899267-68899347 1.0000 80 chr19:3238226-3238306 1.0000 80 chr6:49685251-49685331 1.0000 80 chr15:31689171-31689251 1.0000 80 chr2:86117721-86117801 1.0000 80 chr18:47956073-47956153 1.0000 80 chr6:15210515-15210595 1.0000 80 chr7:129129597-129129677 1.0000 80 chr20:1182822-1182902 1.0000 80 chr19:35705818-35705898 1.0000 80 chr11:109946655-10994673 1.0000 80 chr6:134343852-134343932 1.0000 80 chr8:105774656-105774736 1.0000 80 chr2:106074706-106074786 1.0000 80 chr7:66825025-66825105 1.0000 80 chr6:109628110-109628190 1.0000 80 chr19:30134624-30134704 1.0000 80 chr7:50602227-50602307 1.0000 80 chr2:104086433-104086513 1.0000 80 chr12:32207665-32207745 1.0000 80 chr7:128540906-128540986 1.0000 80 chr7:150019262-150019342 1.0000 80 chr20:49125564-49125644 1.0000 80 chr6:161632038-161632118 1.0000 80 chr9:131448182-131448262 1.0000 80 chr15:68344399-68344479 1.0000 80 chr1:236477518-236477598 1.0000 80 chr1:246431321-246431401 1.0000 80 chr9:139684134-139684214 1.0000 80 chr8:41315643-41315723 1.0000 80 chr6:27743114-27743194 1.0000 80 chr19:9895632-9895712 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PTRF/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PTRF.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.212 G 0.219 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.212 G 0.219 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACTCCATY MEME-1 width = 8 sites = 88 llr = 872 E-value = 5.3e-127 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTCCATY MEME-1 Description -------------------------------------------------------------------------------- Simplified A a::::a:: pos.-specific C :a:aa::6 probability G :::::::: matrix T ::a:::a4 bits 2.2 * ** 2.0 * ** 1.8 * *** 1.6 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTCCATC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCATY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:41315643-41315723 59 1.32e-05 aaccagagca actccatc ttgaatggcg chr1:246431321-246431401 56 1.32e-05 aaccagaaca actccatc ttgaacagga chr1:236477518-236477598 17 1.32e-05 aaccagagca actccatc ttgaatgggg chr7:150019262-150019342 64 1.32e-05 agccagaatt actccatc ttgaataag chr7:128540906-128540986 56 1.32e-05 aaccagagca actccatc ttaaatagga chr12:32207665-32207745 13 1.32e-05 aaccagagca actccatc ttgaataggg chr19:30134624-30134704 42 1.32e-05 aaccagagtg actccatc ttgaataggc chr19:35705818-35705898 56 1.32e-05 aaccagaaca actccatc ttgaatgggg chr20:1182822-1182902 27 1.32e-05 aaccagagta actccatc ttgaataggg chr14:102531136-10253121 37 1.32e-05 agccagacag actccatc ttggctcttt chr1:211698600-211698680 60 1.32e-05 aactagagca actccatc ttgaatagta chr10:71170381-71170461 39 1.32e-05 gacaaaagtg actccatc ttggatgcca chr12:109013306-10901338 37 1.32e-05 gaccgaacag actccatc ttgcttctag chr12:26905145-26905225 55 1.32e-05 aaccagagca actccatc ttgaaaagga chr10:105996091-10599617 66 1.32e-05 aacaagagca actccatc ttaaata chr6:107299395-107299475 38 1.32e-05 agcatggctg actccatc ttgcttcaca chr2:69961395-69961475 41 1.32e-05 aacatagctg actccatc ttgcttctga chr15:75462720-75462800 19 1.32e-05 ggctaaagca actccatc ttggatgcca chr20:30093797-30093877 59 1.32e-05 aaccagagca actccatc ttgagtaggg chr21:19062538-19062618 45 1.32e-05 aactagagtg actccatc ttgaatgggg chr12:131926652-13192673 57 1.32e-05 gacctaaccg actccatc ttgcttctaa chr17:76983862-76983942 21 1.32e-05 aaccagagcc actccatc ttgaaccagg chr15:68212987-68213067 40 1.32e-05 aaccagagca actccatc ttgaataggg chr3:172255720-172255800 41 1.32e-05 aacttaactg actccatc ttgcttctaa chr1:236478925-236479005 54 1.32e-05 gacctaaccg actccatc ttgcttctaa chr13:96037805-96037885 42 1.32e-05 gacatggttg actccatc ttgcttctga chr2:48346199-48346279 66 1.32e-05 aaccagagca actccatc ttgaata chr3:112488663-112488743 66 1.32e-05 aacttaactg actccatc ttgcttc chr9:90082237-90082317 13 1.32e-05 aaccacagca actccatc ttgactaggg chr20:5726856-5726936 49 1.32e-05 gacctaactg actccatc ttgcttctaa chr12:26608990-26609070 12 1.32e-05 aaccagagta actccatc ttaaacgggg chr14:51404672-51404752 47 1.32e-05 aaccaaagtg actccatc ttgaatagga chr16:11727200-11727280 18 1.32e-05 aaccagagca actccatc ttgaataggg chrX:41249322-41249402 44 1.32e-05 aaccagagca actccatc ttgaatagga chr16:65798810-65798890 51 1.32e-05 aaccagagtg actccatc ttgaatagga chr9:79052060-79052140 47 1.32e-05 aacaagagca actccatc ttgaatagga chr16:8165969-8166049 54 1.32e-05 gacctaacca actccatc ttgtgtctaa chr1:54773201-54773281 27 1.32e-05 aaccagagca actccatc ttgaaaagga chr9:38252679-38252759 73 1.32e-05 aaccagagca actccatc chr9:126903366-126903446 23 1.32e-05 aaccagagtg actccatc ttgaataggg chr8:103539790-103539870 41 1.32e-05 aacttaactg actccatc ttgcctctaa chr7:75436954-75437034 40 1.32e-05 aaccagagca actccatc ttaaatatgg chr15:75433044-75433124 54 1.32e-05 gacctaactg actccatc ttgcttctaa chr4:8360174-8360254 37 1.32e-05 aaccagagca actccatc ttgaatatga chr7:36315630-36315710 54 1.32e-05 aaccagagtg actccatc ttgaataggg chr4:37672879-37672959 18 1.32e-05 aaccagaata actccatc ttgaataatg chr20:49125564-49125644 42 3.11e-05 agcatgagtg actccatt ttgattttta chr7:66825025-66825105 40 3.11e-05 aaccagagtg actccatt ttgaataggg chr7:129129597-129129677 13 3.11e-05 gacattagtg actccatt ttgataATTT chr6:15210515-15210595 58 3.11e-05 aaccagagca actccatt ttgaataggg chr1:150681685-150681765 41 3.11e-05 gacataagag actccatt ttgaaaaaga chr3:178750844-178750924 64 3.11e-05 gacataggag actccatt ttgttctgt chr3:138565824-138565904 29 3.11e-05 aaccacagca actccatt ttgaataggg chr10:99387707-99387787 3 3.11e-05 TG ACTCCATT GCAAATATAA chr22:23781924-23782004 38 3.11e-05 aaccagagtg actccatt ttgaataagg chr5:114720405-114720485 53 3.11e-05 aacacaagtg actccatt ttgattctga chr1:109060085-109060165 47 3.11e-05 gacataggag actccatt ttgttctcta chr7:135625275-135625355 41 3.11e-05 gacattgtta actccatt ttgtagacag chr1:185310668-185310748 51 3.11e-05 agcatgagtg actccatt ttggtttggt chr11:33216127-33216207 73 3.11e-05 agcatgaatg actccatt chr6:28655153-28655233 67 3.11e-05 gacataagag actccatt ttgttc chr15:81407538-81407618 37 3.11e-05 agcattagtg actccatt ttgattctga chr19:39970113-39970193 50 3.11e-05 gacataggag actccatt ttgttctgta chr1:11949982-11950062 6 3.11e-05 aagaa actccatt ttgatctgta chr2:55506437-55506517 35 3.11e-05 gacatgggag actccatt ttgttctgta chr7:105824579-105824659 43 3.11e-05 gacacaagtg actccatt ttgattctga chr1:28691516-28691596 22 3.11e-05 agccagacag actccatt ttagtttctt chr3:176241864-176241944 63 3.11e-05 agcatgagtg actccatt ttggtttgat chr1:52224140-52224220 36 3.11e-05 aacaagagtg actccatt ttggtttggt chr16:46975866-46975946 42 3.11e-05 aacattagtg actccatt ttgattctga chr17:62926153-62926233 52 3.11e-05 gacataggag actccatt ttgttctgta chrX:153730611-153730691 49 3.11e-05 aacacaagtg actccatt ttgattctga chr19:51252935-51253015 6 3.11e-05 gacag actccatt ttggtttctt chr6:42920284-42920364 48 3.11e-05 agcatgagcg actccatt ttggtttggt chr3:170474988-170475068 57 3.11e-05 agcaggagtg actccatt ctgttttggt chr10:27488963-27489043 31 3.11e-05 aaccagagca actccatt ttgaatagga chr6:3774298-3774378 38 3.11e-05 gacacaagtg actccatt ttgattctga chr19:16587494-16587574 28 4.48e-05 gctcagttac actccatg aaatttaata chr7:106927838-106927918 53 4.48e-05 gacacaagtg actccatg tcgaatctga chr9:102796287-102796367 43 4.48e-05 aaccagagtg actccatg ttgcataggg chr7:50602227-50602307 33 8.48e-05 gtgccactgc actccagc ctgggcgaca chr1:11748740-11748820 26 8.48e-05 aaccagagca accccatc ttgagtaggg chr5:68387765-68387845 65 8.48e-05 acccagagtg cctccatc ttgaatag chr2:238848562-238848642 24 8.48e-05 tggtagctct accccatc ctcctaacgt chr4:8244726-8244806 43 8.48e-05 aaccagagca gctccatc ttgaatgggg chr18:9884752-9884832 11 8.48e-05 gtgccactgc actccagc ctcggtgaca chr3:4926726-4926806 31 1.39e-04 AGCATAAGCA GCTCCATT TTAGAAGGCA chr10:23329095-23329175 43 1.39e-04 gacagaagtt cctccatt ttgtacctgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCATY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:41315643-41315723 1.3e-05 58_[+1]_14 chr1:246431321-246431401 1.3e-05 55_[+1]_17 chr1:236477518-236477598 1.3e-05 16_[+1]_56 chr7:150019262-150019342 1.3e-05 63_[+1]_9 chr7:128540906-128540986 1.3e-05 55_[+1]_17 chr12:32207665-32207745 1.3e-05 12_[+1]_60 chr19:30134624-30134704 1.3e-05 41_[+1]_31 chr19:35705818-35705898 1.3e-05 55_[+1]_17 chr20:1182822-1182902 1.3e-05 26_[+1]_46 chr14:102531136-10253121 1.3e-05 36_[+1]_36 chr1:211698600-211698680 1.3e-05 59_[+1]_13 chr10:71170381-71170461 1.3e-05 38_[+1]_34 chr12:109013306-10901338 1.3e-05 36_[+1]_36 chr12:26905145-26905225 1.3e-05 54_[+1]_18 chr10:105996091-10599617 1.3e-05 65_[+1]_7 chr6:107299395-107299475 1.3e-05 37_[+1]_35 chr2:69961395-69961475 1.3e-05 40_[+1]_32 chr15:75462720-75462800 1.3e-05 18_[+1]_54 chr20:30093797-30093877 1.3e-05 58_[+1]_14 chr21:19062538-19062618 1.3e-05 44_[+1]_28 chr12:131926652-13192673 1.3e-05 56_[+1]_16 chr17:76983862-76983942 1.3e-05 20_[+1]_52 chr15:68212987-68213067 1.3e-05 39_[+1]_33 chr3:172255720-172255800 1.3e-05 40_[+1]_32 chr1:236478925-236479005 1.3e-05 53_[+1]_19 chr13:96037805-96037885 1.3e-05 41_[+1]_31 chr2:48346199-48346279 1.3e-05 65_[+1]_7 chr3:112488663-112488743 1.3e-05 65_[+1]_7 chr9:90082237-90082317 1.3e-05 12_[+1]_60 chr20:5726856-5726936 1.3e-05 48_[+1]_24 chr12:26608990-26609070 1.3e-05 11_[+1]_61 chr14:51404672-51404752 1.3e-05 46_[+1]_26 chr16:11727200-11727280 1.3e-05 17_[+1]_55 chrX:41249322-41249402 1.3e-05 43_[+1]_29 chr16:65798810-65798890 1.3e-05 50_[+1]_22 chr9:79052060-79052140 1.3e-05 46_[+1]_26 chr16:8165969-8166049 1.3e-05 53_[+1]_19 chr1:54773201-54773281 1.3e-05 26_[+1]_46 chr9:38252679-38252759 1.3e-05 72_[+1] chr9:126903366-126903446 1.3e-05 22_[+1]_50 chr8:103539790-103539870 1.3e-05 40_[+1]_32 chr7:75436954-75437034 1.3e-05 39_[+1]_33 chr15:75433044-75433124 1.3e-05 53_[+1]_19 chr4:8360174-8360254 1.3e-05 36_[+1]_36 chr7:36315630-36315710 1.3e-05 53_[+1]_19 chr4:37672879-37672959 1.3e-05 17_[+1]_55 chr20:49125564-49125644 3.1e-05 41_[+1]_31 chr7:66825025-66825105 3.1e-05 39_[+1]_33 chr7:129129597-129129677 3.1e-05 12_[+1]_60 chr6:15210515-15210595 3.1e-05 57_[+1]_15 chr1:150681685-150681765 3.1e-05 40_[+1]_32 chr3:178750844-178750924 3.1e-05 63_[+1]_9 chr3:138565824-138565904 3.1e-05 28_[+1]_44 chr10:99387707-99387787 3.1e-05 2_[+1]_70 chr22:23781924-23782004 3.1e-05 37_[+1]_35 chr5:114720405-114720485 3.1e-05 52_[+1]_20 chr1:109060085-109060165 3.1e-05 46_[+1]_26 chr7:135625275-135625355 3.1e-05 40_[+1]_32 chr1:185310668-185310748 3.1e-05 50_[+1]_22 chr11:33216127-33216207 3.1e-05 72_[+1] chr6:28655153-28655233 3.1e-05 66_[+1]_6 chr15:81407538-81407618 3.1e-05 36_[+1]_36 chr19:39970113-39970193 3.1e-05 49_[+1]_23 chr1:11949982-11950062 3.1e-05 5_[+1]_67 chr2:55506437-55506517 3.1e-05 34_[+1]_38 chr7:105824579-105824659 3.1e-05 42_[+1]_30 chr1:28691516-28691596 3.1e-05 21_[+1]_51 chr3:176241864-176241944 3.1e-05 62_[+1]_10 chr1:52224140-52224220 3.1e-05 35_[+1]_37 chr16:46975866-46975946 3.1e-05 41_[+1]_31 chr17:62926153-62926233 3.1e-05 51_[+1]_21 chrX:153730611-153730691 3.1e-05 48_[+1]_24 chr19:51252935-51253015 3.1e-05 5_[+1]_67 chr6:42920284-42920364 3.1e-05 47_[+1]_25 chr3:170474988-170475068 3.1e-05 56_[+1]_16 chr10:27488963-27489043 3.1e-05 30_[+1]_42 chr6:3774298-3774378 3.1e-05 37_[+1]_35 chr19:16587494-16587574 4.5e-05 27_[+1]_45 chr7:106927838-106927918 4.5e-05 52_[+1]_20 chr9:102796287-102796367 4.5e-05 42_[+1]_30 chr7:50602227-50602307 8.5e-05 32_[+1]_40 chr1:11748740-11748820 8.5e-05 25_[+1]_47 chr5:68387765-68387845 8.5e-05 64_[+1]_8 chr2:238848562-238848642 8.5e-05 23_[+1]_49 chr4:8244726-8244806 8.5e-05 42_[+1]_30 chr18:9884752-9884832 8.5e-05 10_[+1]_62 chr3:4926726-4926806 0.00014 30_[+1]_42 chr10:23329095-23329175 0.00014 42_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCATY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTCCATY width=8 seqs=88 chr8:41315643-41315723 ( 59) ACTCCATC 1 chr1:246431321-246431401 ( 56) ACTCCATC 1 chr1:236477518-236477598 ( 17) ACTCCATC 1 chr7:150019262-150019342 ( 64) ACTCCATC 1 chr7:128540906-128540986 ( 56) ACTCCATC 1 chr12:32207665-32207745 ( 13) ACTCCATC 1 chr19:30134624-30134704 ( 42) ACTCCATC 1 chr19:35705818-35705898 ( 56) ACTCCATC 1 chr20:1182822-1182902 ( 27) ACTCCATC 1 chr14:102531136-10253121 ( 37) ACTCCATC 1 chr1:211698600-211698680 ( 60) ACTCCATC 1 chr10:71170381-71170461 ( 39) ACTCCATC 1 chr12:109013306-10901338 ( 37) ACTCCATC 1 chr12:26905145-26905225 ( 55) ACTCCATC 1 chr10:105996091-10599617 ( 66) ACTCCATC 1 chr6:107299395-107299475 ( 38) ACTCCATC 1 chr2:69961395-69961475 ( 41) ACTCCATC 1 chr15:75462720-75462800 ( 19) ACTCCATC 1 chr20:30093797-30093877 ( 59) ACTCCATC 1 chr21:19062538-19062618 ( 45) ACTCCATC 1 chr12:131926652-13192673 ( 57) ACTCCATC 1 chr17:76983862-76983942 ( 21) ACTCCATC 1 chr15:68212987-68213067 ( 40) ACTCCATC 1 chr3:172255720-172255800 ( 41) ACTCCATC 1 chr1:236478925-236479005 ( 54) ACTCCATC 1 chr13:96037805-96037885 ( 42) ACTCCATC 1 chr2:48346199-48346279 ( 66) ACTCCATC 1 chr3:112488663-112488743 ( 66) ACTCCATC 1 chr9:90082237-90082317 ( 13) ACTCCATC 1 chr20:5726856-5726936 ( 49) ACTCCATC 1 chr12:26608990-26609070 ( 12) ACTCCATC 1 chr14:51404672-51404752 ( 47) ACTCCATC 1 chr16:11727200-11727280 ( 18) ACTCCATC 1 chrX:41249322-41249402 ( 44) ACTCCATC 1 chr16:65798810-65798890 ( 51) ACTCCATC 1 chr9:79052060-79052140 ( 47) ACTCCATC 1 chr16:8165969-8166049 ( 54) ACTCCATC 1 chr1:54773201-54773281 ( 27) ACTCCATC 1 chr9:38252679-38252759 ( 73) ACTCCATC 1 chr9:126903366-126903446 ( 23) ACTCCATC 1 chr8:103539790-103539870 ( 41) ACTCCATC 1 chr7:75436954-75437034 ( 40) ACTCCATC 1 chr15:75433044-75433124 ( 54) ACTCCATC 1 chr4:8360174-8360254 ( 37) ACTCCATC 1 chr7:36315630-36315710 ( 54) ACTCCATC 1 chr4:37672879-37672959 ( 18) ACTCCATC 1 chr20:49125564-49125644 ( 42) ACTCCATT 1 chr7:66825025-66825105 ( 40) ACTCCATT 1 chr7:129129597-129129677 ( 13) ACTCCATT 1 chr6:15210515-15210595 ( 58) ACTCCATT 1 chr1:150681685-150681765 ( 41) ACTCCATT 1 chr3:178750844-178750924 ( 64) ACTCCATT 1 chr3:138565824-138565904 ( 29) ACTCCATT 1 chr10:99387707-99387787 ( 3) ACTCCATT 1 chr22:23781924-23782004 ( 38) ACTCCATT 1 chr5:114720405-114720485 ( 53) ACTCCATT 1 chr1:109060085-109060165 ( 47) ACTCCATT 1 chr7:135625275-135625355 ( 41) ACTCCATT 1 chr1:185310668-185310748 ( 51) ACTCCATT 1 chr11:33216127-33216207 ( 73) ACTCCATT 1 chr6:28655153-28655233 ( 67) ACTCCATT 1 chr15:81407538-81407618 ( 37) ACTCCATT 1 chr19:39970113-39970193 ( 50) ACTCCATT 1 chr1:11949982-11950062 ( 6) ACTCCATT 1 chr2:55506437-55506517 ( 35) ACTCCATT 1 chr7:105824579-105824659 ( 43) ACTCCATT 1 chr1:28691516-28691596 ( 22) ACTCCATT 1 chr3:176241864-176241944 ( 63) ACTCCATT 1 chr1:52224140-52224220 ( 36) ACTCCATT 1 chr16:46975866-46975946 ( 42) ACTCCATT 1 chr17:62926153-62926233 ( 52) ACTCCATT 1 chrX:153730611-153730691 ( 49) ACTCCATT 1 chr19:51252935-51253015 ( 6) ACTCCATT 1 chr6:42920284-42920364 ( 48) ACTCCATT 1 chr3:170474988-170475068 ( 57) ACTCCATT 1 chr10:27488963-27489043 ( 31) ACTCCATT 1 chr6:3774298-3774378 ( 38) ACTCCATT 1 chr19:16587494-16587574 ( 28) ACTCCATG 1 chr7:106927838-106927918 ( 53) ACTCCATG 1 chr9:102796287-102796367 ( 43) ACTCCATG 1 chr7:50602227-50602307 ( 33) ACTCCAGC 1 chr1:11748740-11748820 ( 26) ACCCCATC 1 chr5:68387765-68387845 ( 65) CCTCCATC 1 chr2:238848562-238848642 ( 24) ACCCCATC 1 chr4:8244726-8244806 ( 43) GCTCCATC 1 chr18:9884752-9884832 ( 11) ACTCCAGC 1 chr3:4926726-4926806 ( 31) GCTCCATT 1 chr10:23329095-23329175 ( 43) CCTCCATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCATY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.71923 E= 5.3e-127 176 -322 -327 -1310 -1310 223 -1310 -1310 -1310 -322 -1310 177 -1310 223 -1310 -1310 -1310 223 -1310 -1310 182 -1310 -1310 -1310 -1310 -1310 -327 177 -1310 148 -268 39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCATY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 5.3e-127 0.954545 0.022727 0.022727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.022727 0.000000 0.977273 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.022727 0.977273 0.000000 0.590909 0.034091 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCATY MEME-1 regular expression -------------------------------------------------------------------------------- ACTCCAT[CT] -------------------------------------------------------------------------------- Time 4.97 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATGGAG MEME-2 width = 8 sites = 85 llr = 815 E-value = 2.1e-108 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATGGAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a3a:::a: pos.-specific C :::::::: probability G :7::aa:a matrix T :::9:::: bits 2.2 ** 2.0 ** * 1.8 ** * 1.6 * * **** Relative 1.3 * ****** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:161632038-161632118 57 1.49e-05 gtaaaaagca agatggag tcagttacgt chr2:104086433-104086513 35 1.49e-05 cacttattca agatggag ttgctctggt chr8:105774656-105774736 1 1.49e-05 . agatggag tcactctggt chr11:109946655-10994673 31 1.49e-05 gtcagaagca agatggag tcggttaagt chr6:49685251-49685331 43 1.49e-05 cccctattta agatggag ttgctccggt chr19:3238226-3238306 31 1.49e-05 ctcctattca agatggag ttgctctggt chr2:68899267-68899347 22 1.49e-05 cccctattca agatggag tgactctggt chr1:235573938-235574018 43 1.49e-05 ctcctattca agatggag ttgctctggt chr3:9686021-9686101 62 1.49e-05 AAAagaagca agatggag ttggttaggt chr7:22864515-22864595 49 1.49e-05 gttagaagca agatggag ttggtgatgt chr1:228313030-228313110 16 1.49e-05 ctagcatcca agatggag gtgctttagc chr22:31145408-31145488 25 1.49e-05 gctttattca agatggag tcactctggt chr15:23091456-23091536 40 1.49e-05 actggaagca agatggag tcagccatgc chr7:158647398-158647478 48 1.49e-05 gttagaagca agatggag tcaggttaga chr1:223972415-223972495 57 1.49e-05 AGAGAAAAAA AGATGGAG GCACAATGGT chr12:132036383-13203646 6 1.49e-05 actca agatggag ttgctctggt chr6:15198185-15198265 42 1.49e-05 ctcctattca agatggag ttgctctggt chr7:124605779-124605859 27 1.49e-05 cccctattca agatggag ttgctgtggt chr7:106485192-106485272 58 1.49e-05 gttagaacca agatggag ttggttatgt chr9:74569738-74569818 32 1.49e-05 ctcctattca agatggag ttgctctggt chr1:100001493-100001573 37 1.49e-05 ctcctattca agatggag ttgctctagt chr11:67278454-67278534 50 1.49e-05 ctcctattca agatggag ttgctctggt chr7:92056629-92056709 45 1.49e-05 accagtgcca agatggag tcacttaggt chrX:2701018-2701098 29 1.49e-05 gttagaagca agatggag ttggttaggt chr21:44536108-44536188 39 1.49e-05 gttagaagca agatggag tcaggtaggt chr15:58782054-58782134 69 1.49e-05 gttaaaagca agatggag tcaa chr3:58022553-58022633 25 1.49e-05 gttagaagca agatggag tcggttaggt chr2:43101436-43101516 64 1.49e-05 cagctattca agatggag ttgctctgg chr5:122200689-122200769 14 1.49e-05 gttggaagca agatggag tcagttaagt chr17:48809592-48809672 54 1.49e-05 ttaacaccca agatggag ttgctttcgc chr1:157298057-157298137 64 1.49e-05 attagaagca agatggag tcagttagg chr15:58373363-58373443 44 1.49e-05 ctcctattca agatggag ctgttctggt chr9:79041113-79041193 42 1.49e-05 gttaaaagga agatggag ttggtcaggt chr9:97114796-97114876 28 1.49e-05 ctcctattca agatggag ttgctctggc chr3:112455729-112455809 67 1.49e-05 gttagaagca agatggag tcagtt chr11:62196837-62196917 16 1.49e-05 gttagaagga agatggag tcggttaggt chrX:120372101-120372181 44 1.49e-05 ttagcttcca agatggag ttactttggc chr7:45028877-45028957 32 1.49e-05 gttagaagca agatggag ttggttcggt chr12:46870134-46870214 23 1.49e-05 ctcctattca agatggag ttgctctggc chr5:19241960-19242040 23 1.49e-05 cccctactca agatggag tcactgtggt chr6:107305347-107305427 25 1.49e-05 ttagcatcca agatggag ttcctttagc chr7:140186614-140186694 32 1.49e-05 gttagaagca agatggag tcagttaagt chr3:114875351-114875431 3 1.49e-05 ca agatggag ctgctctggt chr2:15392014-15392094 22 1.49e-05 ctcctattca agatggag ttgctctggt chr20:32316442-32316522 46 1.49e-05 ttagcatcca agatggag tcacttttgt chr7:106091772-106091852 57 1.49e-05 ggttgaagca agatggag ttggttaggt chr18:8934050-8934130 15 1.49e-05 gccagcagca agatggag tcagccatgc chr6:2926826-2926906 40 1.49e-05 gtaccgatca agatggag tttcttatgc chr14:94556015-94556095 27 1.49e-05 ctcttattca agatggag tcactctggt chr17:55051581-55051661 15 1.49e-05 cctttattca agatggag tcactctggt chr19:9895632-9895712 10 3.42e-05 tacagatca aaatggag tttcttgtgt chr6:27743114-27743194 20 3.42e-05 gtacagaaca aaatggag tctcctatgt chr9:139684134-139684214 25 3.42e-05 gtacagatca aaatggag tttcttatgt chr6:134343852-134343932 72 3.42e-05 aacacaaaca aaatggag t chr18:47956073-47956153 52 3.42e-05 gaccaaacca aaatggag tcactcatgc chr2:86117721-86117801 26 3.42e-05 ccctcactca aaatggag gcgctctggt chr22:28985251-28985331 36 3.42e-05 ggccaaacag aaatggag tcactcatgt chr6:158174092-158174172 48 3.42e-05 gtacagaaca aaatggag tctcttatgt chr9:139675631-139675711 48 3.42e-05 atacagatca aaatggag tttcttatgt chr6:26550539-26550619 31 3.42e-05 ccctcactca aaatggag tcgctctggt chr17:58753501-58753581 38 3.42e-05 tttaggagca aaatggag ttagtcatgc chr8:71384955-71385035 34 3.42e-05 gaccaaatca aaatggag tcactcatgc chr5:149322906-149322986 48 3.42e-05 gtacagaaca aaatggag tttcttatgt chr19:21803962-21804042 8 3.42e-05 tttttca aaatggag tcccttatgt chr6:34688086-34688166 46 3.42e-05 gtacagaaca aaatggag tctcctatgt chr10:4946045-4946125 31 3.42e-05 gaacagatca aaatggag tttgatatgt chr1:113360336-113360416 17 3.42e-05 gtctttttca aaatggag tctcttatgt chr5:149834197-149834277 14 3.42e-05 gtacagaaca aaatggag tctcttatgt chr10:26666643-26666723 57 3.42e-05 atacagaaca aaatggag tctcttatgt chr17:47312012-47312092 48 9.50e-05 gttagaaaca agatgggg tcagttaggt chr9:132645312-132645392 66 9.50e-05 tgctagtttt aggtggag ccgaact chr17:73319899-73319979 11 9.50e-05 ttttaaagat ggatggag tcttgctctt chr10:119020482-11902056 28 9.50e-05 gctagtttta aggtggag ctgagcttaa chr6:109628110-109628190 44 1.14e-04 agagaaccca agatggaa gtcgcagtgt chr2:216482976-216483056 40 1.14e-04 cccctgttca agatggaa gtgctctggt chr7:36277949-36278029 56 1.14e-04 cccctattca agatggaa tagctgtggt chr12:26905145-26905225 66 1.33e-04 ctccatcttg aaaaggag ctgggta chr2:236352403-236352483 3 1.33e-04 gt aaaaggag gccgagacct chr9:90082237-90082317 38 1.33e-04 gggactgggt aaaaggag gctgaaacct chr1:54773201-54773281 38 1.33e-04 ctccatcttg aaaaggag ctgggtaaga chr7:128540906-128540986 15 1.48e-04 ttctcttata aaagggag agggaaaatg chr5:154319113-154319193 70 1.48e-04 atcagaggaa aaagggag agt chr1:173468973-173469053 3 1.48e-04 ta aaagggag agggaaatgt chr10:17605593-17605673 60 1.93e-04 gagcaaacca gaatggag tcagtcatgc chr1:11748740-11748820 52 1.93e-04 gggctgggtc aaatgggg ttgggacttg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:161632038-161632118 1.5e-05 56_[+2]_16 chr2:104086433-104086513 1.5e-05 34_[+2]_38 chr8:105774656-105774736 1.5e-05 [+2]_72 chr11:109946655-10994673 1.5e-05 30_[+2]_42 chr6:49685251-49685331 1.5e-05 42_[+2]_30 chr19:3238226-3238306 1.5e-05 30_[+2]_42 chr2:68899267-68899347 1.5e-05 21_[+2]_51 chr1:235573938-235574018 1.5e-05 42_[+2]_30 chr3:9686021-9686101 1.5e-05 61_[+2]_11 chr7:22864515-22864595 1.5e-05 48_[+2]_24 chr1:228313030-228313110 1.5e-05 15_[+2]_57 chr22:31145408-31145488 1.5e-05 24_[+2]_48 chr15:23091456-23091536 1.5e-05 39_[+2]_33 chr7:158647398-158647478 1.5e-05 47_[+2]_25 chr1:223972415-223972495 1.5e-05 56_[+2]_16 chr12:132036383-13203646 1.5e-05 5_[+2]_67 chr6:15198185-15198265 1.5e-05 41_[+2]_31 chr7:124605779-124605859 1.5e-05 26_[+2]_46 chr7:106485192-106485272 1.5e-05 57_[+2]_15 chr9:74569738-74569818 1.5e-05 31_[+2]_41 chr1:100001493-100001573 1.5e-05 36_[+2]_36 chr11:67278454-67278534 1.5e-05 49_[+2]_23 chr7:92056629-92056709 1.5e-05 44_[+2]_28 chrX:2701018-2701098 1.5e-05 28_[+2]_44 chr21:44536108-44536188 1.5e-05 38_[+2]_34 chr15:58782054-58782134 1.5e-05 68_[+2]_4 chr3:58022553-58022633 1.5e-05 24_[+2]_48 chr2:43101436-43101516 1.5e-05 63_[+2]_9 chr5:122200689-122200769 1.5e-05 13_[+2]_59 chr17:48809592-48809672 1.5e-05 53_[+2]_19 chr1:157298057-157298137 1.5e-05 63_[+2]_9 chr15:58373363-58373443 1.5e-05 43_[+2]_29 chr9:79041113-79041193 1.5e-05 41_[+2]_31 chr9:97114796-97114876 1.5e-05 27_[+2]_45 chr3:112455729-112455809 1.5e-05 66_[+2]_6 chr11:62196837-62196917 1.5e-05 15_[+2]_57 chrX:120372101-120372181 1.5e-05 43_[+2]_29 chr7:45028877-45028957 1.5e-05 31_[+2]_41 chr12:46870134-46870214 1.5e-05 22_[+2]_50 chr5:19241960-19242040 1.5e-05 22_[+2]_50 chr6:107305347-107305427 1.5e-05 24_[+2]_48 chr7:140186614-140186694 1.5e-05 31_[+2]_41 chr3:114875351-114875431 1.5e-05 2_[+2]_70 chr2:15392014-15392094 1.5e-05 21_[+2]_51 chr20:32316442-32316522 1.5e-05 45_[+2]_27 chr7:106091772-106091852 1.5e-05 56_[+2]_16 chr18:8934050-8934130 1.5e-05 14_[+2]_58 chr6:2926826-2926906 1.5e-05 39_[+2]_33 chr14:94556015-94556095 1.5e-05 26_[+2]_46 chr17:55051581-55051661 1.5e-05 14_[+2]_58 chr19:9895632-9895712 3.4e-05 9_[+2]_63 chr6:27743114-27743194 3.4e-05 19_[+2]_53 chr9:139684134-139684214 3.4e-05 24_[+2]_48 chr6:134343852-134343932 3.4e-05 71_[+2]_1 chr18:47956073-47956153 3.4e-05 51_[+2]_21 chr2:86117721-86117801 3.4e-05 25_[+2]_47 chr22:28985251-28985331 3.4e-05 35_[+2]_37 chr6:158174092-158174172 3.4e-05 47_[+2]_25 chr9:139675631-139675711 3.4e-05 47_[+2]_25 chr6:26550539-26550619 3.4e-05 30_[+2]_42 chr17:58753501-58753581 3.4e-05 37_[+2]_35 chr8:71384955-71385035 3.4e-05 33_[+2]_39 chr5:149322906-149322986 3.4e-05 47_[+2]_25 chr19:21803962-21804042 3.4e-05 7_[+2]_65 chr6:34688086-34688166 3.4e-05 45_[+2]_27 chr10:4946045-4946125 3.4e-05 30_[+2]_42 chr1:113360336-113360416 3.4e-05 16_[+2]_56 chr5:149834197-149834277 3.4e-05 13_[+2]_59 chr10:26666643-26666723 3.4e-05 56_[+2]_16 chr17:47312012-47312092 9.5e-05 47_[+2]_25 chr9:132645312-132645392 9.5e-05 65_[+2]_7 chr17:73319899-73319979 9.5e-05 10_[+2]_62 chr10:119020482-11902056 9.5e-05 27_[+2]_45 chr6:109628110-109628190 0.00011 43_[+2]_29 chr2:216482976-216483056 0.00011 39_[+2]_33 chr7:36277949-36278029 0.00011 55_[+2]_17 chr12:26905145-26905225 0.00013 65_[+2]_7 chr2:236352403-236352483 0.00013 2_[+2]_70 chr9:90082237-90082317 0.00013 37_[+2]_35 chr1:54773201-54773281 0.00013 37_[+2]_35 chr7:128540906-128540986 0.00015 14_[+2]_58 chr5:154319113-154319193 0.00015 69_[+2]_3 chr1:173468973-173469053 0.00015 2_[+2]_70 chr10:17605593-17605673 0.00019 59_[+2]_13 chr1:11748740-11748820 0.00019 51_[+2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATGGAG width=8 seqs=85 chr6:161632038-161632118 ( 57) AGATGGAG 1 chr2:104086433-104086513 ( 35) AGATGGAG 1 chr8:105774656-105774736 ( 1) AGATGGAG 1 chr11:109946655-10994673 ( 31) AGATGGAG 1 chr6:49685251-49685331 ( 43) AGATGGAG 1 chr19:3238226-3238306 ( 31) AGATGGAG 1 chr2:68899267-68899347 ( 22) AGATGGAG 1 chr1:235573938-235574018 ( 43) AGATGGAG 1 chr3:9686021-9686101 ( 62) AGATGGAG 1 chr7:22864515-22864595 ( 49) AGATGGAG 1 chr1:228313030-228313110 ( 16) AGATGGAG 1 chr22:31145408-31145488 ( 25) AGATGGAG 1 chr15:23091456-23091536 ( 40) AGATGGAG 1 chr7:158647398-158647478 ( 48) AGATGGAG 1 chr1:223972415-223972495 ( 57) AGATGGAG 1 chr12:132036383-13203646 ( 6) AGATGGAG 1 chr6:15198185-15198265 ( 42) AGATGGAG 1 chr7:124605779-124605859 ( 27) AGATGGAG 1 chr7:106485192-106485272 ( 58) AGATGGAG 1 chr9:74569738-74569818 ( 32) AGATGGAG 1 chr1:100001493-100001573 ( 37) AGATGGAG 1 chr11:67278454-67278534 ( 50) AGATGGAG 1 chr7:92056629-92056709 ( 45) AGATGGAG 1 chrX:2701018-2701098 ( 29) AGATGGAG 1 chr21:44536108-44536188 ( 39) AGATGGAG 1 chr15:58782054-58782134 ( 69) AGATGGAG 1 chr3:58022553-58022633 ( 25) AGATGGAG 1 chr2:43101436-43101516 ( 64) AGATGGAG 1 chr5:122200689-122200769 ( 14) AGATGGAG 1 chr17:48809592-48809672 ( 54) AGATGGAG 1 chr1:157298057-157298137 ( 64) AGATGGAG 1 chr15:58373363-58373443 ( 44) AGATGGAG 1 chr9:79041113-79041193 ( 42) AGATGGAG 1 chr9:97114796-97114876 ( 28) AGATGGAG 1 chr3:112455729-112455809 ( 67) AGATGGAG 1 chr11:62196837-62196917 ( 16) AGATGGAG 1 chrX:120372101-120372181 ( 44) AGATGGAG 1 chr7:45028877-45028957 ( 32) AGATGGAG 1 chr12:46870134-46870214 ( 23) AGATGGAG 1 chr5:19241960-19242040 ( 23) AGATGGAG 1 chr6:107305347-107305427 ( 25) AGATGGAG 1 chr7:140186614-140186694 ( 32) AGATGGAG 1 chr3:114875351-114875431 ( 3) AGATGGAG 1 chr2:15392014-15392094 ( 22) AGATGGAG 1 chr20:32316442-32316522 ( 46) AGATGGAG 1 chr7:106091772-106091852 ( 57) AGATGGAG 1 chr18:8934050-8934130 ( 15) AGATGGAG 1 chr6:2926826-2926906 ( 40) AGATGGAG 1 chr14:94556015-94556095 ( 27) AGATGGAG 1 chr17:55051581-55051661 ( 15) AGATGGAG 1 chr19:9895632-9895712 ( 10) AAATGGAG 1 chr6:27743114-27743194 ( 20) AAATGGAG 1 chr9:139684134-139684214 ( 25) AAATGGAG 1 chr6:134343852-134343932 ( 72) AAATGGAG 1 chr18:47956073-47956153 ( 52) AAATGGAG 1 chr2:86117721-86117801 ( 26) AAATGGAG 1 chr22:28985251-28985331 ( 36) AAATGGAG 1 chr6:158174092-158174172 ( 48) AAATGGAG 1 chr9:139675631-139675711 ( 48) AAATGGAG 1 chr6:26550539-26550619 ( 31) AAATGGAG 1 chr17:58753501-58753581 ( 38) AAATGGAG 1 chr8:71384955-71385035 ( 34) AAATGGAG 1 chr5:149322906-149322986 ( 48) AAATGGAG 1 chr19:21803962-21804042 ( 8) AAATGGAG 1 chr6:34688086-34688166 ( 46) AAATGGAG 1 chr10:4946045-4946125 ( 31) AAATGGAG 1 chr1:113360336-113360416 ( 17) AAATGGAG 1 chr5:149834197-149834277 ( 14) AAATGGAG 1 chr10:26666643-26666723 ( 57) AAATGGAG 1 chr17:47312012-47312092 ( 48) AGATGGGG 1 chr9:132645312-132645392 ( 66) AGGTGGAG 1 chr17:73319899-73319979 ( 11) GGATGGAG 1 chr10:119020482-11902056 ( 28) AGGTGGAG 1 chr6:109628110-109628190 ( 44) AGATGGAA 1 chr2:216482976-216483056 ( 40) AGATGGAA 1 chr7:36277949-36278029 ( 56) AGATGGAA 1 chr12:26905145-26905225 ( 66) AAAAGGAG 1 chr2:236352403-236352483 ( 3) AAAAGGAG 1 chr9:90082237-90082317 ( 38) AAAAGGAG 1 chr1:54773201-54773281 ( 38) AAAAGGAG 1 chr7:128540906-128540986 ( 15) AAAGGGAG 1 chr5:154319113-154319193 ( 70) AAAGGGAG 1 chr1:173468973-173469053 ( 3) AAAGGGAG 1 chr10:17605593-17605673 ( 60) GAATGGAG 1 chr1:11748740-11748820 ( 52) AAATGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.05851 E= 2.1e-108 179 -1305 -322 -1305 22 -1305 162 -1305 179 -1305 -322 -1305 -259 -1305 -263 168 -1305 -1305 219 -1305 -1305 -1305 219 -1305 179 -1305 -322 -1305 -300 -1305 214 -1305 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 2.1e-108 0.976471 0.000000 0.023529 0.000000 0.329412 0.000000 0.670588 0.000000 0.976471 0.000000 0.023529 0.000000 0.047059 0.000000 0.035294 0.917647 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.976471 0.000000 0.023529 0.000000 0.035294 0.000000 0.964706 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGAG MEME-2 regular expression -------------------------------------------------------------------------------- A[GA]ATGGAG -------------------------------------------------------------------------------- Time 8.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAMCCAG MEME-3 width = 8 sites = 106 llr = 792 E-value = 5.8e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAMCCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:a522a1 pos.-specific C :::488:: probability G :7:1:::9 matrix T 92:::::: bits 2.2 2.0 1.8 * 1.6 * ** Relative 1.3 * * **** Entropy 1.1 *** **** (10.8 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAACCAG consensus T CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAMCCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:28940428-28940508 69 1.05e-05 cagaggcatt tgacccag agca chr5:68387765-68387845 53 1.05e-05 cagaggcgtt tgacccag agtgcctcca chr8:41315643-41315723 47 2.44e-05 cagaggtatt tgaaccag agcaactcca chr1:246431321-246431401 44 2.44e-05 cagaggcgtg tgaaccag aacaactcca chr1:236477518-236477598 5 2.44e-05 catg tgaaccag agcaactcca chr7:128540906-128540986 44 2.44e-05 cagaggcatt tgaaccag agcaactcca chr12:32207665-32207745 1 2.44e-05 . tgaaccag agcaactcca chr19:30134624-30134704 30 2.44e-05 gagcgacatt tgaaccag agtgactcca chr19:35705818-35705898 44 2.44e-05 cagaggcatg tgaaccag aacaactcca chr20:1182822-1182902 15 2.44e-05 cagtggcatt tgaaccag agtaactcca chr22:23781924-23782004 26 2.44e-05 cagaggcatt tgaaccag agtgactcca chr20:30093797-30093877 47 2.44e-05 cagaggtgct tgaaccag agcaactcca chr1:173468973-173469053 31 2.44e-05 cagagacatg tgaaccag agcatctcca chr17:76983862-76983942 9 2.44e-05 gagacgtt tgaaccag agccactcca chr15:68212987-68213067 28 2.44e-05 cagaggcatt tgaaccag agcaactcca chr2:48346199-48346279 54 2.44e-05 gagaggcgtt tgaaccag agcaactcca chr1:11748740-11748820 14 2.44e-05 tagaggtgtc tgaaccag agcaacccca chr6:158130715-158130795 60 2.44e-05 cataggcgtg tgaaccag agcaactccg chr16:11727200-11727280 6 2.44e-05 gggtt tgaaccag agcaactcca chrX:41249322-41249402 32 2.44e-05 cagaggcatg tgaaccag agcaactcca chr1:113395621-113395701 66 2.44e-05 TCgaggcatt tgaaccag agcaact chr16:65798810-65798890 39 2.44e-05 cagaggcatt tgaaccag agtgactcca chr4:8244726-8244806 31 2.44e-05 cagagacatg tgaaccag agcagctcca chr1:54773201-54773281 15 2.44e-05 caggggtgtg tgaaccag agcaactcca chr9:38252679-38252759 61 2.44e-05 cagaggcttg tgaaccag agcaactcca chr10:27488963-27489043 19 2.44e-05 cagaggcatg tgaaccag agcaactcca chr7:75436954-75437034 28 2.44e-05 cagaagcgtg tgaaccag agcaactcca chr4:8360174-8360254 25 2.44e-05 cagagacgtg tgaaccag agcaactcca chr7:36315630-36315710 42 2.44e-05 cagaggcatt tgaaccag agtgactcca chr4:37672879-37672959 6 2.44e-05 gcgtt tgaaccag aataactcca chr2:104086433-104086513 17 5.21e-05 cagccttatt ttacccag cacttattca chr6:49685251-49685331 25 5.21e-05 cagcctcatt ttacccag cccctattta chr2:68899267-68899347 4 5.21e-05 att ttacccag cccctattca chr1:235573938-235574018 25 5.21e-05 cagccttatt ttacccag ctcctattca chr6:15198185-15198265 24 5.21e-05 cagcctcatt ttacccag ctcctattca chr9:74569738-74569818 14 5.21e-05 cagcttcatt ttacccag ctcctattca chr11:67278454-67278534 32 5.21e-05 cagcctcatt ttacccag ctcctattca chr2:43101436-43101516 49 5.21e-05 cagcctcatt ttacccag ctattcaaga chr8:64068039-64068119 72 5.21e-05 cagccttatt ttacccag c chr15:58373363-58373443 26 5.21e-05 cagccttatt ttacccag ctcctattca chr9:97114796-97114876 10 5.21e-05 agccttatt ttacccag ctcctattca chr8:129188362-129188442 40 5.21e-05 TTGCATATAG TTACCCAG AATGCTCTGC chr12:46870134-46870214 5 5.21e-05 tatt ttacccag ctcctattca chr14:94556015-94556095 9 5.21e-05 gccttatt ttacccag ctcttattca chr7:36277949-36278029 38 5.21e-05 tggccttatt ttacccag cccctattca chr15:58782054-58782134 39 1.14e-04 cacctaggaa tgaccaag gacagcttgg chr3:112464824-112464904 66 1.14e-04 TTATTGATGA TGAAACAg cagggca chr6:135645869-135645949 51 1.14e-04 CAGAAAGGTT TTAACCAG AGGATTCCAT chr11:109946655-10994673 1 1.43e-04 . tgaacaag gacagcttag chr10:105996091-10599617 54 1.43e-04 cagaggcatg tgaacaag agcaactcca chr7:22864515-22864595 19 1.43e-04 tgcccaggag tgaacaag gacagcttgg chr7:106485192-106485272 28 1.43e-04 tgcccaggaa tgaacaag gacagcatag chr17:47312012-47312092 18 1.43e-04 cgcttaggaa tgaacaag gacagttgag chr9:79041113-79041193 12 1.43e-04 cgctcaggaa tgaacaag gacagcttgg chr7:45028877-45028957 2 1.43e-04 a tgaacaag gacagcttgg chr9:79052060-79052140 35 1.43e-04 cagaaacatg tgaacaag agcaactcca chr7:77507929-77508009 52 1.43e-04 ctcccaggaa tgaacaag cacagcttgg chr17:73319899-73319979 29 1.80e-04 tcttgctctt tcacccag gctggaatgc chr2:216482976-216483056 22 1.80e-04 cagccatatt tcacccag cccctgttca chr2:15392014-15392094 4 1.80e-04 att tcacccag ctcctattca chr1:9681233-9681313 67 1.80e-04 ctcagcttct tcacccag ctccta chr9:102796287-102796367 2 2.30e-04 c tcaaccag gtcaactctg chr1:100001493-100001573 19 2.30e-04 ctgccttatt ttacacag ctcctattca chr3:4926726-4926806 62 2.30e-04 CTTTTACAAG TTACACAG AAAAATAATG chr3:186605603-186605683 30 2.30e-04 aGGTAGTCCT TGAACCAA TAACTTGAAA chr14:51404672-51404752 35 2.30e-04 cagaggtgtt tgaaccaa agtgactcca chr1:16843690-16843770 65 2.59e-04 cttaaaaaca tgagacag atgttatt chr3:172255720-172255800 11 2.59e-04 atattatgac tgagacag tgaaagagat chr3:112488663-112488743 36 2.59e-04 aaattatgac tgagacag tgaaagagat chr6:74234288-74234368 46 2.59e-04 gatataaaaa ttagccag gcttggtggt chr6:112125163-112125243 71 2.59e-04 ACTGCGGGGA TGAGACAG TG chr8:103539790-103539870 11 2.59e-04 aaatcatgac tgagacag tgaaagagat chr19:3238226-3238306 13 3.20e-04 gtaatcccag ttacCAag ctcctattca chr16:56496076-56496156 45 3.20e-04 TGAGTTGTTA TGACAAAG GCCAAACTGC chr6:161632038-161632118 27 3.34e-04 tgcccaggaa tgagcaag gacagcttgg chr19:9895632-9895712 44 3.62e-04 ttttctacat agacacag taacagtctg chr6:27743114-27743194 54 3.62e-04 ctttctacac agacacag taacaatctg chr9:139684134-139684214 59 3.62e-04 ttttctacac agacacag taacagtctg chr12:47667087-47667167 55 3.62e-04 CTGTTGCCTG AGACACAG CAAGATAAGA chr19:21803962-21804042 41 3.62e-04 ctttctacat agacacag taacagtctg chr10:99177819-99177899 17 3.62e-04 ctttctacac agacacag caacaatctg chr1:113360336-113360416 50 3.62e-04 ctttctacat agacacag tgacagtctg chr5:149834197-149834277 48 3.62e-04 ctttctacac agacacag taatggtctg chr6:2926826-2926906 73 3.62e-04 ttttctacat agacacag chr7:150019262-150019342 31 4.44e-04 AGCAGGCATT TGCCCCAG tgtcagaggt chr14:102531136-10253121 25 4.44e-04 ctcagctaag agagccag acagactcca chr1:150681685-150681765 50 4.44e-04 gactccattt tgaaaaag acttgtactt chr7:92056629-92056709 7 4.44e-04 ttatac tgcccCAG CCCTGTATAG chr1:28691516-28691596 10 4.44e-04 agcagaaag agagccag acagactcca chr3:112455729-112455809 38 4.44e-04 cgcccaggaa tgaaaaag acagcatgga chr1:52224140-52224220 24 4.44e-04 gatacggcat ttaacaag agtgactcca chr7:140186614-140186694 2 4.44e-04 a tgaaaaag gacagcttgg chr7:129859187-129859267 69 4.44e-04 aagagaaatc tgacctag ttga chr1:12173944-12174024 1 4.94e-04 . agaccaag ggaaggaaaa chr1:211698600-211698680 48 5.23e-04 cagaggcatt tgaactag agcaactcca chr21:19062538-19062618 33 5.23e-04 caggggcatt tgaactag agtgactcca chr7:106927838-106927918 42 5.91e-04 tgccaggctt tgacacaa gtgactccat chr1:223972415-223972495 25 5.91e-04 ACTTCATTCT TTACCCAA AATTCAGAGC chr7:105824579-105824659 32 5.91e-04 gtcagggttt tgacacaa gtgactccat chr3:176065655-176065735 72 5.91e-04 cagccttatt ttacccaa c chr17:55051581-55051661 42 5.91e-04 ttaggttgcc tgacaCAA GTGCACAgag chr6:3774298-3774378 27 5.91e-04 tgtcagggtt tgacacaa gtgactccat chr4:39033388-39033468 58 6.15e-04 gaggttgcag tgagccaa gattaggcca chr20:23110729-23110809 35 6.24e-04 TCCCAGTTCC TGGCCCAG GCTCAGTCCA chr6:135554966-135555046 22 7.60e-04 GAGAAACCTT TGTCCCAG ACTACTGTTT chr3:138565824-138565904 17 8.75e-04 cagaggcatt tgaaccac agcaactcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAMCCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:28940428-28940508 1e-05 68_[+3]_4 chr5:68387765-68387845 1e-05 52_[+3]_20 chr8:41315643-41315723 2.4e-05 46_[+3]_26 chr1:246431321-246431401 2.4e-05 43_[+3]_29 chr1:236477518-236477598 2.4e-05 4_[+3]_68 chr7:128540906-128540986 2.4e-05 43_[+3]_29 chr12:32207665-32207745 2.4e-05 [+3]_72 chr19:30134624-30134704 2.4e-05 29_[+3]_43 chr19:35705818-35705898 2.4e-05 43_[+3]_29 chr20:1182822-1182902 2.4e-05 14_[+3]_58 chr22:23781924-23782004 2.4e-05 25_[+3]_47 chr20:30093797-30093877 2.4e-05 46_[+3]_26 chr1:173468973-173469053 2.4e-05 30_[+3]_42 chr17:76983862-76983942 2.4e-05 8_[+3]_64 chr15:68212987-68213067 2.4e-05 27_[+3]_45 chr2:48346199-48346279 2.4e-05 53_[+3]_19 chr1:11748740-11748820 2.4e-05 13_[+3]_59 chr6:158130715-158130795 2.4e-05 59_[+3]_13 chr16:11727200-11727280 2.4e-05 5_[+3]_67 chrX:41249322-41249402 2.4e-05 31_[+3]_41 chr1:113395621-113395701 2.4e-05 65_[+3]_7 chr16:65798810-65798890 2.4e-05 38_[+3]_34 chr4:8244726-8244806 2.4e-05 30_[+3]_42 chr1:54773201-54773281 2.4e-05 14_[+3]_58 chr9:38252679-38252759 2.4e-05 60_[+3]_12 chr10:27488963-27489043 2.4e-05 18_[+3]_54 chr7:75436954-75437034 2.4e-05 27_[+3]_45 chr4:8360174-8360254 2.4e-05 24_[+3]_48 chr7:36315630-36315710 2.4e-05 41_[+3]_31 chr4:37672879-37672959 2.4e-05 5_[+3]_67 chr2:104086433-104086513 5.2e-05 16_[+3]_56 chr6:49685251-49685331 5.2e-05 24_[+3]_48 chr2:68899267-68899347 5.2e-05 3_[+3]_69 chr1:235573938-235574018 5.2e-05 24_[+3]_48 chr6:15198185-15198265 5.2e-05 23_[+3]_49 chr9:74569738-74569818 5.2e-05 13_[+3]_59 chr11:67278454-67278534 5.2e-05 31_[+3]_41 chr2:43101436-43101516 5.2e-05 48_[+3]_24 chr8:64068039-64068119 5.2e-05 71_[+3]_1 chr15:58373363-58373443 5.2e-05 25_[+3]_47 chr9:97114796-97114876 5.2e-05 9_[+3]_63 chr8:129188362-129188442 5.2e-05 39_[+3]_33 chr12:46870134-46870214 5.2e-05 4_[+3]_68 chr14:94556015-94556095 5.2e-05 8_[+3]_64 chr7:36277949-36278029 5.2e-05 37_[+3]_35 chr15:58782054-58782134 0.00011 38_[+3]_34 chr3:112464824-112464904 0.00011 65_[+3]_7 chr6:135645869-135645949 0.00011 50_[+3]_22 chr11:109946655-10994673 0.00014 [+3]_72 chr10:105996091-10599617 0.00014 53_[+3]_19 chr7:22864515-22864595 0.00014 18_[+3]_54 chr7:106485192-106485272 0.00014 27_[+3]_45 chr17:47312012-47312092 0.00014 17_[+3]_55 chr9:79041113-79041193 0.00014 11_[+3]_61 chr7:45028877-45028957 0.00014 1_[+3]_71 chr9:79052060-79052140 0.00014 34_[+3]_38 chr7:77507929-77508009 0.00014 51_[+3]_21 chr17:73319899-73319979 0.00018 28_[+3]_44 chr2:216482976-216483056 0.00018 21_[+3]_51 chr2:15392014-15392094 0.00018 3_[+3]_69 chr1:9681233-9681313 0.00018 66_[+3]_6 chr9:102796287-102796367 0.00023 1_[+3]_71 chr1:100001493-100001573 0.00023 18_[+3]_54 chr3:4926726-4926806 0.00023 61_[+3]_11 chr3:186605603-186605683 0.00023 29_[+3]_43 chr14:51404672-51404752 0.00023 34_[+3]_38 chr1:16843690-16843770 0.00026 64_[+3]_8 chr3:172255720-172255800 0.00026 10_[+3]_62 chr3:112488663-112488743 0.00026 35_[+3]_37 chr6:74234288-74234368 0.00026 45_[+3]_27 chr6:112125163-112125243 0.00026 70_[+3]_2 chr8:103539790-103539870 0.00026 10_[+3]_62 chr19:3238226-3238306 0.00032 12_[+3]_60 chr16:56496076-56496156 0.00032 44_[+3]_28 chr6:161632038-161632118 0.00033 26_[+3]_46 chr19:9895632-9895712 0.00036 43_[+3]_29 chr6:27743114-27743194 0.00036 53_[+3]_19 chr9:139684134-139684214 0.00036 58_[+3]_14 chr12:47667087-47667167 0.00036 54_[+3]_18 chr19:21803962-21804042 0.00036 40_[+3]_32 chr10:99177819-99177899 0.00036 16_[+3]_56 chr1:113360336-113360416 0.00036 49_[+3]_23 chr5:149834197-149834277 0.00036 47_[+3]_25 chr6:2926826-2926906 0.00036 72_[+3] chr7:150019262-150019342 0.00044 30_[+3]_42 chr14:102531136-10253121 0.00044 24_[+3]_48 chr1:150681685-150681765 0.00044 49_[+3]_23 chr7:92056629-92056709 0.00044 6_[+3]_66 chr1:28691516-28691596 0.00044 9_[+3]_63 chr3:112455729-112455809 0.00044 37_[+3]_35 chr1:52224140-52224220 0.00044 23_[+3]_49 chr7:140186614-140186694 0.00044 1_[+3]_71 chr7:129859187-129859267 0.00044 68_[+3]_4 chr1:12173944-12174024 0.00049 [+3]_72 chr1:211698600-211698680 0.00052 47_[+3]_25 chr21:19062538-19062618 0.00052 32_[+3]_40 chr7:106927838-106927918 0.00059 41_[+3]_31 chr1:223972415-223972495 0.00059 24_[+3]_48 chr7:105824579-105824659 0.00059 31_[+3]_41 chr3:176065655-176065735 0.00059 71_[+3]_1 chr17:55051581-55051661 0.00059 41_[+3]_31 chr6:3774298-3774378 0.00059 26_[+3]_46 chr4:39033388-39033468 0.00062 57_[+3]_15 chr20:23110729-23110809 0.00062 34_[+3]_38 chr6:135554966-135555046 0.00076 21_[+3]_51 chr3:138565824-138565904 0.00087 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAMCCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAMCCAG width=8 seqs=106 chr22:28940428-28940508 ( 69) TGACCCAG 1 chr5:68387765-68387845 ( 53) TGACCCAG 1 chr8:41315643-41315723 ( 47) TGAACCAG 1 chr1:246431321-246431401 ( 44) TGAACCAG 1 chr1:236477518-236477598 ( 5) TGAACCAG 1 chr7:128540906-128540986 ( 44) TGAACCAG 1 chr12:32207665-32207745 ( 1) TGAACCAG 1 chr19:30134624-30134704 ( 30) TGAACCAG 1 chr19:35705818-35705898 ( 44) TGAACCAG 1 chr20:1182822-1182902 ( 15) TGAACCAG 1 chr22:23781924-23782004 ( 26) TGAACCAG 1 chr20:30093797-30093877 ( 47) TGAACCAG 1 chr1:173468973-173469053 ( 31) TGAACCAG 1 chr17:76983862-76983942 ( 9) TGAACCAG 1 chr15:68212987-68213067 ( 28) TGAACCAG 1 chr2:48346199-48346279 ( 54) TGAACCAG 1 chr1:11748740-11748820 ( 14) TGAACCAG 1 chr6:158130715-158130795 ( 60) TGAACCAG 1 chr16:11727200-11727280 ( 6) TGAACCAG 1 chrX:41249322-41249402 ( 32) TGAACCAG 1 chr1:113395621-113395701 ( 66) TGAACCAG 1 chr16:65798810-65798890 ( 39) TGAACCAG 1 chr4:8244726-8244806 ( 31) TGAACCAG 1 chr1:54773201-54773281 ( 15) TGAACCAG 1 chr9:38252679-38252759 ( 61) TGAACCAG 1 chr10:27488963-27489043 ( 19) TGAACCAG 1 chr7:75436954-75437034 ( 28) TGAACCAG 1 chr4:8360174-8360254 ( 25) TGAACCAG 1 chr7:36315630-36315710 ( 42) TGAACCAG 1 chr4:37672879-37672959 ( 6) TGAACCAG 1 chr2:104086433-104086513 ( 17) TTACCCAG 1 chr6:49685251-49685331 ( 25) TTACCCAG 1 chr2:68899267-68899347 ( 4) TTACCCAG 1 chr1:235573938-235574018 ( 25) TTACCCAG 1 chr6:15198185-15198265 ( 24) TTACCCAG 1 chr9:74569738-74569818 ( 14) TTACCCAG 1 chr11:67278454-67278534 ( 32) TTACCCAG 1 chr2:43101436-43101516 ( 49) TTACCCAG 1 chr8:64068039-64068119 ( 72) TTACCCAG 1 chr15:58373363-58373443 ( 26) TTACCCAG 1 chr9:97114796-97114876 ( 10) TTACCCAG 1 chr8:129188362-129188442 ( 40) TTACCCAG 1 chr12:46870134-46870214 ( 5) TTACCCAG 1 chr14:94556015-94556095 ( 9) TTACCCAG 1 chr7:36277949-36278029 ( 38) TTACCCAG 1 chr15:58782054-58782134 ( 39) TGACCAAG 1 chr3:112464824-112464904 ( 66) TGAAACAG 1 chr6:135645869-135645949 ( 51) TTAACCAG 1 chr11:109946655-10994673 ( 1) TGAACAAG 1 chr10:105996091-10599617 ( 54) TGAACAAG 1 chr7:22864515-22864595 ( 19) TGAACAAG 1 chr7:106485192-106485272 ( 28) TGAACAAG 1 chr17:47312012-47312092 ( 18) TGAACAAG 1 chr9:79041113-79041193 ( 12) TGAACAAG 1 chr7:45028877-45028957 ( 2) TGAACAAG 1 chr9:79052060-79052140 ( 35) TGAACAAG 1 chr7:77507929-77508009 ( 52) TGAACAAG 1 chr17:73319899-73319979 ( 29) TCACCCAG 1 chr2:216482976-216483056 ( 22) TCACCCAG 1 chr2:15392014-15392094 ( 4) TCACCCAG 1 chr1:9681233-9681313 ( 67) TCACCCAG 1 chr9:102796287-102796367 ( 2) TCAACCAG 1 chr1:100001493-100001573 ( 19) TTACACAG 1 chr3:4926726-4926806 ( 62) TTACACAG 1 chr3:186605603-186605683 ( 30) TGAACCAA 1 chr14:51404672-51404752 ( 35) TGAACCAA 1 chr1:16843690-16843770 ( 65) TGAGACAG 1 chr3:172255720-172255800 ( 11) TGAGACAG 1 chr3:112488663-112488743 ( 36) TGAGACAG 1 chr6:74234288-74234368 ( 46) TTAGCCAG 1 chr6:112125163-112125243 ( 71) TGAGACAG 1 chr8:103539790-103539870 ( 11) TGAGACAG 1 chr19:3238226-3238306 ( 13) TTACCAAG 1 chr16:56496076-56496156 ( 45) TGACAAAG 1 chr6:161632038-161632118 ( 27) TGAGCAAG 1 chr19:9895632-9895712 ( 44) AGACACAG 1 chr6:27743114-27743194 ( 54) AGACACAG 1 chr9:139684134-139684214 ( 59) AGACACAG 1 chr12:47667087-47667167 ( 55) AGACACAG 1 chr19:21803962-21804042 ( 41) AGACACAG 1 chr10:99177819-99177899 ( 17) AGACACAG 1 chr1:113360336-113360416 ( 50) AGACACAG 1 chr5:149834197-149834277 ( 48) AGACACAG 1 chr6:2926826-2926906 ( 73) AGACACAG 1 chr7:150019262-150019342 ( 31) TGCCCCAG 1 chr14:102531136-10253121 ( 25) AGAGCCAG 1 chr1:150681685-150681765 ( 50) TGAAAAAG 1 chr7:92056629-92056709 ( 7) TGCCCCAG 1 chr1:28691516-28691596 ( 10) AGAGCCAG 1 chr3:112455729-112455809 ( 38) TGAAAAAG 1 chr1:52224140-52224220 ( 24) TTAACAAG 1 chr7:140186614-140186694 ( 2) TGAAAAAG 1 chr7:129859187-129859267 ( 69) TGACCTAG 1 chr1:12173944-12174024 ( 1) AGACCAAG 1 chr1:211698600-211698680 ( 48) TGAACTAG 1 chr21:19062538-19062618 ( 33) TGAACTAG 1 chr7:106927838-106927918 ( 42) TGACACAA 1 chr1:223972415-223972495 ( 25) TTACCCAA 1 chr7:105824579-105824659 ( 32) TGACACAA 1 chr3:176065655-176065735 ( 72) TTACCCAA 1 chr17:55051581-55051661 ( 42) TGACACAA 1 chr6:3774298-3774378 ( 27) TGACACAA 1 chr4:39033388-39033468 ( 58) TGAGCCAA 1 chr20:23110729-23110809 ( 35) TGGCCCAG 1 chr6:135554966-135555046 ( 22) TGTCCCAG 1 chr3:138565824-138565904 ( 17) TGAACCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAMCCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.97196 E= 5.8e-052 -132 -1337 -1337 163 -1337 -217 175 -40 177 -349 -453 -492 71 106 -121 -1337 -26 185 -1337 -1337 -74 192 -1337 -334 182 -1337 -1337 -1337 -174 -449 205 -1337 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAMCCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 5.8e-052 0.113208 0.000000 0.000000 0.886792 0.000000 0.047170 0.735849 0.216981 0.962264 0.018868 0.009434 0.009434 0.462264 0.443396 0.094340 0.000000 0.235849 0.764151 0.000000 0.000000 0.169811 0.801887 0.000000 0.028302 1.000000 0.000000 0.000000 0.000000 0.084906 0.009434 0.905660 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAMCCAG MEME-3 regular expression -------------------------------------------------------------------------------- T[GT]A[AC][CA]CAG -------------------------------------------------------------------------------- Time 11.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCAGARG MEME-4 width = 8 sites = 54 llr = 478 E-value = 1.2e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCAGARG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::a:a31 pos.-specific C ::8::::: probability G 91::a:79 matrix T :92::::: bits 2.2 2.0 * 1.8 * ** * 1.6 * *** * Relative 1.3 ****** * Entropy 1.1 ******** (12.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTCAGAGG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGARG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:41315643-41315723 35 1.12e-05 cactaatgat gtcagagg tatttgaacc chr1:246431321-246431401 32 1.12e-05 GAATTGTATt gtcagagg cgtgtgaacc chr7:150019262-150019342 40 1.12e-05 TTGCCCCAGt gtcagagg tgtttaagcc chr7:128540906-128540986 32 1.12e-05 gagggaaaat gtcagagg catttgaacc chr7:66825025-66825105 16 1.12e-05 TTTTACTCTt gtcagagg cattcaaacc chr19:35705818-35705898 32 1.12e-05 atctctctgt gtcagagg catgtgaacc chr1:211698600-211698680 36 1.12e-05 aggtgggagc gtcagagg catttgaact chr3:138565824-138565904 5 1.12e-05 tAGA gtcagagg catttgaacc chr12:26905145-26905225 31 1.12e-05 CAATGGTTTt gtcagagg catttaaacc chr10:105996091-10599617 42 1.12e-05 agggggaaat gtcagagg catgtgaaca chr6:107299395-107299475 15 1.12e-05 gattgtgaca gtcagagg aatctagcat chr22:28940428-28940508 57 1.12e-05 agctaacatt gtcagagg catttgaccc chr20:30093797-30093877 35 1.12e-05 ATATACCTTt gtcagagg tgcttgaacc chr9:102796287-102796367 19 1.12e-05 ggtcaactct gtcagagg cgttcaaacc chr2:174217489-174217569 66 1.12e-05 tatctcctgt gtcagagg catttga chr15:68212987-68213067 16 1.12e-05 gcatgatgtt gtcagagg catttgaacc chr14:51404672-51404752 23 1.12e-05 TGAGACTCCC gtcagagg tgtttgaacc chr5:68387765-68387845 41 1.12e-05 AGTCCTACTt gtcagagg cgtttgaccc chrX:41249322-41249402 20 1.12e-05 CTGGGGAAGt gtcagagg catgtgaacc chr16:65798810-65798890 27 1.12e-05 tccagggact gtcagagg catttgaacc chr9:38252679-38252759 49 1.12e-05 cacaccttct gtcagagg cttgtgaacc chr10:27488963-27489043 7 1.12e-05 AGTAAt gtcagagg catgtgaacc chr11:109946655-10994673 21 2.56e-05 cagcttagag gtcagaag caagatggag chr4:38319000-38319080 65 2.56e-05 AAGCCATTGt gtcagaag cgtttgaa chr7:75436954-75437034 16 2.56e-05 AAGTATATGt gtcagaag cgtgtgaacc chr1:11748740-11748820 2 4.07e-05 t gttagagg tgtctgaacc chr4:39033388-39033468 44 4.92e-05 gaatccggca ggcagagg ttgcagtgag chr20:23110729-23110809 69 4.92e-05 ATGGTGGGAA GGCAGAGG CACG chr1:173468973-173469053 19 8.31e-05 agagggaaat gtcagaga catgtgaacc chr7:22864515-22864595 39 8.31e-05 cagcttggag gttagaag caagatggag chr7:158647398-158647478 38 8.31e-05 cagcttggag gttagaag caagatggag chrX:2701018-2701098 19 8.31e-05 cagcttaaag gttagaag caagatggag chr21:44536108-44536188 29 8.31e-05 cagcctaaag gttagaag caagatggag chr3:58022553-58022633 15 8.31e-05 cagcctaaag gttagaag caagatggag chr3:112455729-112455809 57 8.31e-05 cagcatggag gttagaag caagatggag chr11:62196837-62196917 6 8.31e-05 taaag gttagaag gaagatggag chr7:45028877-45028957 22 8.31e-05 cagcttggaa gttagaag caagatggag chr4:8244726-8244806 19 8.31e-05 AGGTCAACTt gtcagaga catgtgaacc chr7:140186614-140186694 22 8.31e-05 cagcttggag gttagaag caagatggag chr2:15392014-15392094 69 8.31e-05 GTAACAGTCT GTCAGAGA ATGA chr7:77507929-77508009 72 8.31e-05 cagcttggag gttagaag c chr4:8360174-8360254 13 8.31e-05 gaatctacct gtcagaga cgtgtgaacc chr6:158174092-158174172 19 9.42e-05 agcatctcaa ggcagaag aatttttctt chr6:34688086-34688166 17 9.42e-05 agaatctcaa ggcagaag aatttgcctt chr10:26666643-26666723 29 9.42e-05 agcatctcaa ggcagaag aattttcctt chr21:19062538-19062618 21 1.03e-04 AAGTCCTCAt gtcagggg catttgaact chr1:54773201-54773281 3 1.03e-04 cc gtcagggg tgtgtgaacc chr5:154319113-154319193 60 1.17e-04 aggctaggtg atcagagg aaaaagggag chr22:23781924-23782004 14 1.17e-04 atgtgcgggt atcagagg catttgaacc chr9:79052060-79052140 23 1.36e-04 GAGAGAGATt gtcagaaa catgtgaaca chr2:48346199-48346279 42 1.59e-04 TGGTAGTATt gtgagagg cgtttgaacc chr16:8165969-8166049 33 1.81e-04 ctgagaccgt gacagagg cctgacctaa chr19:21318002-21318082 13 1.92e-04 atatatgcag gtcacagg ggttataatg chr20:32316442-32316522 15 2.11e-04 actggggcta atcagaag tcaacatggg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGARG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:41315643-41315723 1.1e-05 34_[+4]_38 chr1:246431321-246431401 1.1e-05 31_[+4]_41 chr7:150019262-150019342 1.1e-05 39_[+4]_33 chr7:128540906-128540986 1.1e-05 31_[+4]_41 chr7:66825025-66825105 1.1e-05 15_[+4]_57 chr19:35705818-35705898 1.1e-05 31_[+4]_41 chr1:211698600-211698680 1.1e-05 35_[+4]_37 chr3:138565824-138565904 1.1e-05 4_[+4]_68 chr12:26905145-26905225 1.1e-05 30_[+4]_42 chr10:105996091-10599617 1.1e-05 41_[+4]_31 chr6:107299395-107299475 1.1e-05 14_[+4]_58 chr22:28940428-28940508 1.1e-05 56_[+4]_16 chr20:30093797-30093877 1.1e-05 34_[+4]_38 chr9:102796287-102796367 1.1e-05 18_[+4]_54 chr2:174217489-174217569 1.1e-05 65_[+4]_7 chr15:68212987-68213067 1.1e-05 15_[+4]_57 chr14:51404672-51404752 1.1e-05 22_[+4]_50 chr5:68387765-68387845 1.1e-05 40_[+4]_32 chrX:41249322-41249402 1.1e-05 19_[+4]_53 chr16:65798810-65798890 1.1e-05 26_[+4]_46 chr9:38252679-38252759 1.1e-05 48_[+4]_24 chr10:27488963-27489043 1.1e-05 6_[+4]_66 chr11:109946655-10994673 2.6e-05 20_[+4]_52 chr4:38319000-38319080 2.6e-05 64_[+4]_8 chr7:75436954-75437034 2.6e-05 15_[+4]_57 chr1:11748740-11748820 4.1e-05 1_[+4]_71 chr4:39033388-39033468 4.9e-05 43_[+4]_29 chr20:23110729-23110809 4.9e-05 68_[+4]_4 chr1:173468973-173469053 8.3e-05 18_[+4]_54 chr7:22864515-22864595 8.3e-05 38_[+4]_34 chr7:158647398-158647478 8.3e-05 37_[+4]_35 chrX:2701018-2701098 8.3e-05 18_[+4]_54 chr21:44536108-44536188 8.3e-05 28_[+4]_44 chr3:58022553-58022633 8.3e-05 14_[+4]_58 chr3:112455729-112455809 8.3e-05 56_[+4]_16 chr11:62196837-62196917 8.3e-05 5_[+4]_67 chr7:45028877-45028957 8.3e-05 21_[+4]_51 chr4:8244726-8244806 8.3e-05 18_[+4]_54 chr7:140186614-140186694 8.3e-05 21_[+4]_51 chr2:15392014-15392094 8.3e-05 68_[+4]_4 chr7:77507929-77508009 8.3e-05 71_[+4]_1 chr4:8360174-8360254 8.3e-05 12_[+4]_60 chr6:158174092-158174172 9.4e-05 18_[+4]_54 chr6:34688086-34688166 9.4e-05 16_[+4]_56 chr10:26666643-26666723 9.4e-05 28_[+4]_44 chr21:19062538-19062618 0.0001 20_[+4]_52 chr1:54773201-54773281 0.0001 2_[+4]_70 chr5:154319113-154319193 0.00012 59_[+4]_13 chr22:23781924-23782004 0.00012 13_[+4]_59 chr9:79052060-79052140 0.00014 22_[+4]_50 chr2:48346199-48346279 0.00016 41_[+4]_31 chr16:8165969-8166049 0.00018 32_[+4]_40 chr19:21318002-21318082 0.00019 12_[+4]_60 chr20:32316442-32316522 0.00021 14_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGARG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCAGARG width=8 seqs=54 chr8:41315643-41315723 ( 35) GTCAGAGG 1 chr1:246431321-246431401 ( 32) GTCAGAGG 1 chr7:150019262-150019342 ( 40) GTCAGAGG 1 chr7:128540906-128540986 ( 32) GTCAGAGG 1 chr7:66825025-66825105 ( 16) GTCAGAGG 1 chr19:35705818-35705898 ( 32) GTCAGAGG 1 chr1:211698600-211698680 ( 36) GTCAGAGG 1 chr3:138565824-138565904 ( 5) GTCAGAGG 1 chr12:26905145-26905225 ( 31) GTCAGAGG 1 chr10:105996091-10599617 ( 42) GTCAGAGG 1 chr6:107299395-107299475 ( 15) GTCAGAGG 1 chr22:28940428-28940508 ( 57) GTCAGAGG 1 chr20:30093797-30093877 ( 35) GTCAGAGG 1 chr9:102796287-102796367 ( 19) GTCAGAGG 1 chr2:174217489-174217569 ( 66) GTCAGAGG 1 chr15:68212987-68213067 ( 16) GTCAGAGG 1 chr14:51404672-51404752 ( 23) GTCAGAGG 1 chr5:68387765-68387845 ( 41) GTCAGAGG 1 chrX:41249322-41249402 ( 20) GTCAGAGG 1 chr16:65798810-65798890 ( 27) GTCAGAGG 1 chr9:38252679-38252759 ( 49) GTCAGAGG 1 chr10:27488963-27489043 ( 7) GTCAGAGG 1 chr11:109946655-10994673 ( 21) GTCAGAAG 1 chr4:38319000-38319080 ( 65) GTCAGAAG 1 chr7:75436954-75437034 ( 16) GTCAGAAG 1 chr1:11748740-11748820 ( 2) GTTAGAGG 1 chr4:39033388-39033468 ( 44) GGCAGAGG 1 chr20:23110729-23110809 ( 69) GGCAGAGG 1 chr1:173468973-173469053 ( 19) GTCAGAGA 1 chr7:22864515-22864595 ( 39) GTTAGAAG 1 chr7:158647398-158647478 ( 38) GTTAGAAG 1 chrX:2701018-2701098 ( 19) GTTAGAAG 1 chr21:44536108-44536188 ( 29) GTTAGAAG 1 chr3:58022553-58022633 ( 15) GTTAGAAG 1 chr3:112455729-112455809 ( 57) GTTAGAAG 1 chr11:62196837-62196917 ( 6) GTTAGAAG 1 chr7:45028877-45028957 ( 22) GTTAGAAG 1 chr4:8244726-8244806 ( 19) GTCAGAGA 1 chr7:140186614-140186694 ( 22) GTTAGAAG 1 chr2:15392014-15392094 ( 69) GTCAGAGA 1 chr7:77507929-77508009 ( 72) GTTAGAAG 1 chr4:8360174-8360254 ( 13) GTCAGAGA 1 chr6:158174092-158174172 ( 19) GGCAGAAG 1 chr6:34688086-34688166 ( 17) GGCAGAAG 1 chr10:26666643-26666723 ( 29) GGCAGAAG 1 chr21:19062538-19062618 ( 21) GTCAGGGG 1 chr1:54773201-54773281 ( 3) GTCAGGGG 1 chr5:154319113-154319193 ( 60) ATCAGAGG 1 chr22:23781924-23782004 ( 14) ATCAGAGG 1 chr9:79052060-79052140 ( 23) GTCAGAAA 1 chr2:48346199-48346279 ( 42) GTGAGAGG 1 chr16:8165969-8166049 ( 33) GACAGAGG 1 chr19:21318002-21318082 ( 13) GTCACAGG 1 chr20:32316442-32316522 ( 15) ATCAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGARG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.96686 E= 1.2e-034 -235 -1240 211 -1240 -393 -1240 -124 164 -1240 187 -356 -49 182 -1240 -1240 -1240 -1240 -352 216 -1240 177 -1240 -256 -1240 24 -1240 161 -1240 -161 -1240 205 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGARG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.2e-034 0.055556 0.000000 0.944444 0.000000 0.018519 0.000000 0.092593 0.888889 0.000000 0.777778 0.018519 0.203704 1.000000 0.000000 0.000000 0.000000 0.000000 0.018519 0.981481 0.000000 0.962963 0.000000 0.037037 0.000000 0.333333 0.000000 0.666667 0.000000 0.092593 0.000000 0.907407 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGARG MEME-4 regular expression -------------------------------------------------------------------------------- GT[CT]AGA[GA]G -------------------------------------------------------------------------------- Time 15.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGKTMA MEME-5 width = 8 sites = 54 llr = 455 E-value = 8.9e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGKTMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::49 pos.-specific C a:::115: probability G ::995::1 matrix T :a1159:: bits 2.2 * 2.0 * 1.8 **** 1.6 **** * * Relative 1.3 **** * * Entropy 1.1 **** * * (12.1 bits) 0.9 **** * * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGGGTCA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:25883239-25883319 67 1.09e-05 CCTCTGCACA CTGGGTCA TTTTTC chr2:104086433-104086513 48 2.52e-05 tggagttgct ctggttca aatgactctg chr8:105774656-105774736 14 2.52e-05 tggagtcact ctggttca aacgtctctg chr19:3238226-3238306 44 2.52e-05 tggagttgct ctggttca aacgcttctg chr2:68899267-68899347 35 2.52e-05 tggagtgact ctggttca aatgcctctg chr1:235573938-235574018 56 2.52e-05 tggagttgct ctggttca aacgtctctg chr6:15198185-15198265 55 2.52e-05 tggagttgct ctggttca aatgcctctg chr9:74569738-74569818 45 2.52e-05 tggagttgct ctggttca cacacctctg chr11:67278454-67278534 63 2.52e-05 tggagttgct ctggttca aacacctctg chr8:33341556-33341636 8 2.52e-05 ggttgct ctggttca aatgcctctt chr15:58373363-58373443 57 2.52e-05 tggagctgtt ctggttca catgcctttg chr2:216482976-216483056 53 2.52e-05 tggaagtgct ctggttca cacgcctctg chr3:114875351-114875431 16 2.52e-05 tggagctgct ctggttca aaagcttctg chr2:15392014-15392094 35 2.52e-05 tggagttgct ctggttca aatgccgctg chr17:73154775-73154855 11 2.52e-05 tggagttgct ctggttca aacgtctctg chr14:94556015-94556095 40 2.52e-05 tggagtcact ctggttca aatgcttctg chr1:236477518-236477598 35 3.98e-05 ttgaatgggg ctgggtaa aatgaggctg chr12:32207665-32207745 32 3.98e-05 tgaatagggg ctgggtaa aatgaggctg chr20:1182822-1182902 46 3.98e-05 tgaatagggg ctgggtaa aatgaggatg chr3:138565824-138565904 48 3.98e-05 tgaatagggg ctgggtaa aataaggctg chr1:173468973-173469053 62 3.98e-05 taaataagag ctgggtaa aatgaggctg chrX:16604222-16604302 17 3.98e-05 tgaatagggg ctgggtaa aatgaatctg chr17:76983862-76983942 40 3.98e-05 tgaaccaggt ctgggtaa attacggctg chr14:51404672-51404752 66 3.98e-05 tgaataggag ctgggtaa aataagg chr16:11727200-11727280 37 3.98e-05 tgaatagggg ctgggtaa aatgaggctg chrX:41249322-41249402 63 3.98e-05 tgaataggag ctgggtaa aatgaagctg chr16:65798810-65798890 70 3.98e-05 tgaataggac ctgggtaa aat chr4:8244726-8244806 62 3.98e-05 tgaatggggg ctgggtaa agtgaggctg chr9:79052060-79052140 66 3.98e-05 tgaataggag ctgggtaa aataagg chr1:54773201-54773281 46 3.98e-05 tgaaaaggag ctgggtaa gatgaggctg chr9:126903366-126903446 42 3.98e-05 tgaatagggg ctgggtaa aataaggttg chr10:27488963-27489043 50 3.98e-05 tgaataggag ctgggtaa aatgaggcag chr4:8360174-8360254 56 3.98e-05 tgaatatgag ctgggtaa aatgaggctg chr7:36315630-36315710 73 3.98e-05 tgaatagggg ctgggtaa chr4:37672879-37672959 37 3.98e-05 tgaataatgg ctgggtaa aatgaggctg chr9:97114796-97114876 41 6.94e-05 tggagttgct ctggctca aatgcctctg chr12:46870134-46870214 36 6.94e-05 tggagttgct ctggctca catgtctctg chr6:26550539-26550619 44 1.11e-04 tggagtcgct ctggttcg aatgcctctc chr7:135529863-135529943 16 1.11e-04 GTATTATTTA CTGGGCCA CTGAGAAGCC chr12:132036383-13203646 19 1.11e-04 tggagttgct ctggttcg aacacctctg chr1:11748740-11748820 70 1.11e-04 ttgggacttg ctgggcca tat chr1:110457517-110457597 15 1.11e-04 GCCTGCTCAT CTGGGCCA TGAAGGAGCC chr7:66825025-66825105 59 1.22e-04 tgaatagggg ctgggtga aataaggctg chr22:23781924-23782004 57 1.22e-04 tgaataagga ctgggtga aataagactg chr22:31145408-31145488 38 2.32e-04 tggagtcact ctggttag gatgcttctg chr7:140186614-140186694 61 2.32e-04 agatctctct ctgtttca gtcataattt chr17:55051581-55051661 28 2.32e-04 tggagtcact ctggttag gttgcctgac chr12:109013306-10901338 68 2.50e-04 ttaagctgtc cttgttca ttcct chr3:172255720-172255800 72 2.50e-04 ccaagctgtc cttgttca t chr8:103539790-103539870 72 2.50e-04 ccaagctgtc cttgttca t chr6:135554966-135555046 34 3.42e-04 TCCCAGACTA CTGTTTAA TGTTGCTCCC chrX:120372101-120372181 5 3.86e-04 gaac ctggttta attagaagtc chr9:130763128-130763208 43 4.38e-04 actgattctc ctgtctca gcctcttgag chr18:9884752-9884832 37 4.38e-04 cagggcaaga ctgtctca aagaaaaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:25883239-25883319 1.1e-05 66_[+5]_6 chr2:104086433-104086513 2.5e-05 47_[+5]_25 chr8:105774656-105774736 2.5e-05 13_[+5]_59 chr19:3238226-3238306 2.5e-05 43_[+5]_29 chr2:68899267-68899347 2.5e-05 34_[+5]_38 chr1:235573938-235574018 2.5e-05 55_[+5]_17 chr6:15198185-15198265 2.5e-05 54_[+5]_18 chr9:74569738-74569818 2.5e-05 44_[+5]_28 chr11:67278454-67278534 2.5e-05 62_[+5]_10 chr8:33341556-33341636 2.5e-05 7_[+5]_65 chr15:58373363-58373443 2.5e-05 56_[+5]_16 chr2:216482976-216483056 2.5e-05 52_[+5]_20 chr3:114875351-114875431 2.5e-05 15_[+5]_57 chr2:15392014-15392094 2.5e-05 34_[+5]_38 chr17:73154775-73154855 2.5e-05 10_[+5]_62 chr14:94556015-94556095 2.5e-05 39_[+5]_33 chr1:236477518-236477598 4e-05 34_[+5]_38 chr12:32207665-32207745 4e-05 31_[+5]_41 chr20:1182822-1182902 4e-05 45_[+5]_27 chr3:138565824-138565904 4e-05 47_[+5]_25 chr1:173468973-173469053 4e-05 61_[+5]_11 chrX:16604222-16604302 4e-05 16_[+5]_56 chr17:76983862-76983942 4e-05 39_[+5]_33 chr14:51404672-51404752 4e-05 65_[+5]_7 chr16:11727200-11727280 4e-05 36_[+5]_36 chrX:41249322-41249402 4e-05 62_[+5]_10 chr16:65798810-65798890 4e-05 69_[+5]_3 chr4:8244726-8244806 4e-05 61_[+5]_11 chr9:79052060-79052140 4e-05 65_[+5]_7 chr1:54773201-54773281 4e-05 45_[+5]_27 chr9:126903366-126903446 4e-05 41_[+5]_31 chr10:27488963-27489043 4e-05 49_[+5]_23 chr4:8360174-8360254 4e-05 55_[+5]_17 chr7:36315630-36315710 4e-05 72_[+5] chr4:37672879-37672959 4e-05 36_[+5]_36 chr9:97114796-97114876 6.9e-05 40_[+5]_32 chr12:46870134-46870214 6.9e-05 35_[+5]_37 chr6:26550539-26550619 0.00011 43_[+5]_29 chr7:135529863-135529943 0.00011 15_[+5]_57 chr12:132036383-13203646 0.00011 18_[+5]_54 chr1:11748740-11748820 0.00011 69_[+5]_3 chr1:110457517-110457597 0.00011 14_[+5]_58 chr7:66825025-66825105 0.00012 58_[+5]_14 chr22:23781924-23782004 0.00012 56_[+5]_16 chr22:31145408-31145488 0.00023 37_[+5]_35 chr7:140186614-140186694 0.00023 60_[+5]_12 chr17:55051581-55051661 0.00023 27_[+5]_45 chr12:109013306-10901338 0.00025 67_[+5]_5 chr3:172255720-172255800 0.00025 71_[+5]_1 chr8:103539790-103539870 0.00025 71_[+5]_1 chr6:135554966-135555046 0.00034 33_[+5]_39 chrX:120372101-120372181 0.00039 4_[+5]_68 chr9:130763128-130763208 0.00044 42_[+5]_30 chr18:9884752-9884832 0.00044 36_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGKTMA width=8 seqs=54 chr7:25883239-25883319 ( 67) CTGGGTCA 1 chr2:104086433-104086513 ( 48) CTGGTTCA 1 chr8:105774656-105774736 ( 14) CTGGTTCA 1 chr19:3238226-3238306 ( 44) CTGGTTCA 1 chr2:68899267-68899347 ( 35) CTGGTTCA 1 chr1:235573938-235574018 ( 56) CTGGTTCA 1 chr6:15198185-15198265 ( 55) CTGGTTCA 1 chr9:74569738-74569818 ( 45) CTGGTTCA 1 chr11:67278454-67278534 ( 63) CTGGTTCA 1 chr8:33341556-33341636 ( 8) CTGGTTCA 1 chr15:58373363-58373443 ( 57) CTGGTTCA 1 chr2:216482976-216483056 ( 53) CTGGTTCA 1 chr3:114875351-114875431 ( 16) CTGGTTCA 1 chr2:15392014-15392094 ( 35) CTGGTTCA 1 chr17:73154775-73154855 ( 11) CTGGTTCA 1 chr14:94556015-94556095 ( 40) CTGGTTCA 1 chr1:236477518-236477598 ( 35) CTGGGTAA 1 chr12:32207665-32207745 ( 32) CTGGGTAA 1 chr20:1182822-1182902 ( 46) CTGGGTAA 1 chr3:138565824-138565904 ( 48) CTGGGTAA 1 chr1:173468973-173469053 ( 62) CTGGGTAA 1 chrX:16604222-16604302 ( 17) CTGGGTAA 1 chr17:76983862-76983942 ( 40) CTGGGTAA 1 chr14:51404672-51404752 ( 66) CTGGGTAA 1 chr16:11727200-11727280 ( 37) CTGGGTAA 1 chrX:41249322-41249402 ( 63) CTGGGTAA 1 chr16:65798810-65798890 ( 70) CTGGGTAA 1 chr4:8244726-8244806 ( 62) CTGGGTAA 1 chr9:79052060-79052140 ( 66) CTGGGTAA 1 chr1:54773201-54773281 ( 46) CTGGGTAA 1 chr9:126903366-126903446 ( 42) CTGGGTAA 1 chr10:27488963-27489043 ( 50) CTGGGTAA 1 chr4:8360174-8360254 ( 56) CTGGGTAA 1 chr7:36315630-36315710 ( 73) CTGGGTAA 1 chr4:37672879-37672959 ( 37) CTGGGTAA 1 chr9:97114796-97114876 ( 41) CTGGCTCA 1 chr12:46870134-46870214 ( 36) CTGGCTCA 1 chr6:26550539-26550619 ( 44) CTGGTTCG 1 chr7:135529863-135529943 ( 16) CTGGGCCA 1 chr12:132036383-13203646 ( 19) CTGGTTCG 1 chr1:11748740-11748820 ( 70) CTGGGCCA 1 chr1:110457517-110457597 ( 15) CTGGGCCA 1 chr7:66825025-66825105 ( 59) CTGGGTGA 1 chr22:23781924-23782004 ( 57) CTGGGTGA 1 chr22:31145408-31145488 ( 38) CTGGTTAG 1 chr7:140186614-140186694 ( 61) CTGTTTCA 1 chr17:55051581-55051661 ( 28) CTGGTTAG 1 chr12:109013306-10901338 ( 68) CTTGTTCA 1 chr3:172255720-172255800 ( 72) CTTGTTCA 1 chr8:103539790-103539870 ( 72) CTTGTTCA 1 chr6:135554966-135555046 ( 34) CTGTTTAA 1 chrX:120372101-120372181 ( 5) CTGGTTTA 1 chr9:130763128-130763208 ( 43) CTGTCTCA 1 chr18:9884752-9884832 ( 37) CTGTCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.1965 E= 8.9e-024 -1240 223 -1240 -1240 -1240 -1240 -1240 181 -1240 -1240 211 -236 -1240 -1240 208 -195 -1240 -152 108 69 -1240 -193 -1240 172 53 134 -256 -395 171 -1240 -156 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 8.9e-024 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.000000 0.925926 0.074074 0.000000 0.074074 0.462963 0.462963 0.000000 0.055556 0.000000 0.944444 0.407407 0.537037 0.037037 0.018519 0.925926 0.000000 0.074074 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGKTMA MEME-5 regular expression -------------------------------------------------------------------------------- CTGG[GT]T[CA]A -------------------------------------------------------------------------------- Time 18.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:3774298-3774378 8.88e-03 37_[+1(3.11e-05)]_35 chr10:26666643-26666723 2.20e-03 28_[+4(9.42e-05)]_20_[+2(3.42e-05)]_\ 16 chr4:37672879-37672959 4.72e-06 5_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 11_[+5(3.98e-05)]_36 chr7:36277949-36278029 2.76e-03 37_[+3(5.21e-05)]_35 chr3:4498610-4498690 1.00e+00 80 chr7:25883239-25883319 2.78e-04 66_[+5(1.09e-05)]_6 chr7:36315630-36315710 2.20e-06 41_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 11_[+5(3.98e-05)] chrX:135971599-135971679 2.10e-01 80 chr5:131758047-131758127 4.70e-01 80 chr6:41186900-41186980 1.00e+00 80 chr7:129859187-129859267 1.01e-01 80 chr10:119020482-11902056 7.13e-02 27_[+2(9.50e-05)]_45 chr6:135645869-135645949 7.44e-03 80 chr1:9681233-9681313 1.12e-01 80 chr4:8360174-8360254 1.42e-07 12_[+4(8.31e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_11_[+5(3.98e-05)]_17 chr11:76522429-76522509 4.94e-01 80 chr18:9021611-9021691 1.42e-01 80 chr3:152950029-152950109 5.28e-02 80 chr7:77507929-77508009 3.26e-03 71_[+4(8.31e-05)]_1 chr5:177903073-177903153 8.57e-01 80 chr18:9259325-9259405 8.27e-01 80 chr1:235049302-235049382 5.68e-01 80 chr18:9053993-9054073 5.71e-01 80 chr15:75433044-75433124 4.75e-02 53_[+1(1.32e-05)]_19 chr17:55051581-55051661 2.51e-04 14_[+2(1.49e-05)]_58 chr14:94556015-94556095 6.89e-06 8_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_33 chr7:75436954-75437034 5.22e-06 15_[+4(2.56e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_33 chr8:103539790-103539870 4.79e-04 40_[+1(1.32e-05)]_32 chr6:2926826-2926906 1.29e-03 39_[+2(1.49e-05)]_33 chr10:27488963-27489043 4.90e-08 6_[+4(1.12e-05)]_4_[+3(2.44e-05)]_4_\ [+1(3.11e-05)]_11_[+5(3.98e-05)]_23 chr9:126903366-126903446 2.45e-04 22_[+1(1.32e-05)]_11_[+5(3.98e-05)]_\ 31 chr18:8934050-8934130 2.03e-02 14_[+2(1.49e-05)]_58 chr9:38252679-38252759 5.33e-06 48_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)] chr6:112125163-112125243 2.93e-01 80 chr1:54773201-54773281 1.17e-08 14_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 11_[+5(3.98e-05)]_27 chr3:170474988-170475068 4.02e-03 56_[+1(3.11e-05)]_16 chr6:42920284-42920364 3.09e-02 47_[+1(3.11e-05)]_25 chr19:51252935-51253015 5.36e-02 5_[+1(3.11e-05)]_67 chr7:106091772-106091852 2.17e-02 56_[+2(1.49e-05)]_16 chr3:15633603-15633683 9.95e-01 80 chrX:153730611-153730691 2.02e-02 48_[+1(3.11e-05)]_24 chr20:32316442-32316522 4.56e-03 45_[+2(1.49e-05)]_27 chr17:73154775-73154855 5.02e-02 10_[+5(2.52e-05)]_62 chr16:8165969-8166049 1.80e-03 53_[+1(1.32e-05)]_19 chr9:128455945-128456025 1.00e+00 80 chr18:9884752-9884832 4.93e-04 10_[+1(8.48e-05)]_62 chr9:79052060-79052140 7.08e-07 46_[+1(1.32e-05)]_11_[+5(3.98e-05)]_\ 7 chr8:129044896-129044976 7.13e-02 80 chr6:74234288-74234368 2.76e-02 80 chr17:62926153-62926233 2.20e-03 51_[+1(3.11e-05)]_21 chr10:23329095-23329175 2.96e-02 80 chr3:176065655-176065735 1.69e-01 80 chr1:145030484-145030564 8.20e-01 80 chr2:15392014-15392094 9.85e-07 21_[+2(1.49e-05)]_5_[+5(2.52e-05)]_\ 26_[+4(8.31e-05)]_4 chr3:114875351-114875431 5.70e-04 2_[+2(1.49e-05)]_5_[+5(2.52e-05)]_\ 57 chr7:140186614-140186694 2.49e-05 21_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 41 chr6:107305347-107305427 5.76e-03 24_[+2(1.49e-05)]_48 chr5:19241960-19242040 9.03e-03 22_[+2(1.49e-05)]_50 chr12:46870134-46870214 7.96e-05 4_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(6.94e-05)]_37 chr15:63683029-63683109 4.70e-02 80 chr8:129188362-129188442 1.46e-02 39_[+3(5.21e-05)]_33 chr2:216482976-216483056 2.03e-04 52_[+5(2.52e-05)]_20 chr1:12173944-12174024 2.38e-02 80 chr8:128976035-128976115 5.37e-01 80 chr4:8244726-8244806 1.58e-07 18_[+4(8.31e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(8.48e-05)]_11_[+5(3.98e-05)]_11 chr16:65798810-65798890 7.10e-08 26_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_11_[+5(3.98e-05)]_3 chr9:131200162-131200242 9.97e-01 80 chr13:96010320-96010400 1.56e-01 80 chr3:112464824-112464904 1.30e-02 80 chr19:21318002-21318082 2.39e-01 80 chr3:24538715-24538795 6.09e-01 80 chr5:18792295-18792375 3.47e-01 80 chr1:113395621-113395701 6.44e-02 65_[+3(2.44e-05)]_7 chr16:46975866-46975946 3.60e-02 41_[+1(3.11e-05)]_31 chr21:35338098-35338178 1.00e+00 80 chrX:41249322-41249402 1.37e-08 19_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_11_[+5(3.98e-05)]_10 chr2:216485380-216485460 1.69e-01 80 chr16:11727200-11727280 2.72e-06 5_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 11_[+5(3.98e-05)]_36 chr16:31033604-31033684 3.84e-01 80 chr2:238848562-238848642 7.77e-02 23_[+1(8.48e-05)]_49 chr7:45028877-45028957 1.71e-05 21_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 41 chr1:145028934-145029014 6.80e-01 80 chr18:9874886-9874966 6.20e-01 80 chr8:130713277-130713357 2.43e-01 80 chr6:107278966-107279046 6.99e-01 80 chrX:120372101-120372181 4.98e-04 43_[+2(1.49e-05)]_29 chr2:159991706-159991786 4.48e-01 80 chr17:73319899-73319979 7.64e-03 10_[+2(9.50e-05)]_62 chr6:158130715-158130795 5.06e-04 59_[+3(2.44e-05)]_13 chr11:62196837-62196917 2.36e-03 5_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 57 chr1:52224140-52224220 9.33e-03 35_[+1(3.11e-05)]_37 chr3:112455729-112455809 4.13e-04 56_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 6 chr9:97114796-97114876 1.38e-05 9_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(6.94e-05)]_32 chr3:13053381-13053461 1.13e-01 80 chr3:176241864-176241944 6.96e-02 62_[+1(3.11e-05)]_10 chr9:79041113-79041193 2.11e-03 41_[+2(1.49e-05)]_31 chr15:58373363-58373443 1.81e-05 25_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_16 chr5:149834197-149834277 8.69e-03 13_[+2(3.42e-05)]_59 chr6:135554966-135555046 1.08e-02 80 chr9:132645312-132645392 2.21e-03 65_[+2(9.50e-05)]_7 chr1:28691516-28691596 1.68e-03 21_[+1(3.11e-05)]_51 chr1:157298057-157298137 7.37e-03 63_[+2(1.49e-05)]_9 chr8:33341556-33341636 1.28e-01 7_[+5(2.52e-05)]_65 chr8:64068039-64068119 8.48e-02 71_[+3(5.21e-05)]_1 chr5:68387765-68387845 4.82e-06 40_[+4(1.12e-05)]_4_[+3(1.05e-05)]_\ 4_[+1(8.48e-05)]_8 chr14:51404672-51404752 1.59e-07 22_[+4(1.12e-05)]_16_[+1(1.32e-05)]_\ 11_[+5(3.98e-05)]_7 chr9:130763128-130763208 3.37e-01 80 chr20:31160215-31160295 1.91e-01 80 chr17:48809592-48809672 2.87e-02 53_[+2(1.49e-05)]_19 chr12:26608990-26609070 3.65e-03 11_[+1(1.32e-05)]_61 chr7:105824579-105824659 6.96e-03 42_[+1(3.11e-05)]_30 chr7:75434186-75434266 6.59e-01 80 chr20:23110729-23110809 2.73e-04 68_[+4(4.92e-05)]_4 chr3:186605603-186605683 1.06e-01 80 chr5:122200689-122200769 4.59e-03 13_[+2(1.49e-05)]_59 chr1:113360336-113360416 4.43e-03 16_[+2(3.42e-05)]_56 chr10:99177819-99177899 3.98e-01 80 chr20:5726856-5726936 2.89e-02 48_[+1(1.32e-05)]_24 chr2:55506437-55506517 4.46e-03 34_[+1(3.11e-05)]_38 chr3:4926726-4926806 9.74e-03 80 chr1:17219483-17219563 2.16e-01 80 chr8:101510681-101510761 1.24e-01 80 chr2:43101436-43101516 1.62e-03 48_[+3(5.21e-05)]_7_[+2(1.49e-05)]_\ 9 chr9:90082237-90082317 3.39e-05 12_[+1(1.32e-05)]_11_[+5(3.98e-05)]_\ 41 chr2:171629870-171629950 3.14e-01 80 chr10:4946045-4946125 8.32e-03 30_[+2(3.42e-05)]_42 chr1:110457517-110457597 3.01e-02 80 chr3:112488663-112488743 2.05e-03 65_[+1(1.32e-05)]_7 chr1:11748740-11748820 1.18e-08 1_[+4(4.07e-05)]_4_[+3(2.44e-05)]_4_\ [+1(8.48e-05)]_11_[+5(1.09e-05)]_28 chr1:11949982-11950062 6.28e-02 5_[+1(3.11e-05)]_67 chr2:48346199-48346279 5.08e-05 53_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 7 chr19:39970113-39970193 2.20e-03 49_[+1(3.11e-05)]_23 chr8:96104045-96104125 1.08e-01 80 chr13:96037805-96037885 1.55e-02 41_[+1(1.32e-05)]_31 chr15:81407538-81407618 8.55e-03 36_[+1(3.11e-05)]_36 chr11:475123-475203 9.49e-01 80 chr1:236478925-236479005 2.89e-02 53_[+1(1.32e-05)]_19 chr3:58022553-58022633 1.40e-03 14_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 48 chr15:58782054-58782134 1.91e-03 68_[+2(1.49e-05)]_4 chr6:28655153-28655233 1.46e-02 66_[+1(3.11e-05)]_6 chr21:44536108-44536188 4.67e-04 28_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 34 chr3:172255720-172255800 4.79e-04 40_[+1(1.32e-05)]_32 chrX:2701018-2701098 2.68e-03 18_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 44 chr7:133767636-133767716 2.93e-01 80 chr7:92056629-92056709 6.38e-04 44_[+2(1.49e-05)]_28 chr2:47103265-47103345 5.15e-02 80 chr11:67278454-67278534 1.68e-05 31_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_10 chr16:47180226-47180306 4.99e-02 80 chr6:34688086-34688166 2.27e-03 16_[+4(9.42e-05)]_21_[+2(3.42e-05)]_\ 27 chr17:47312012-47312092 3.00e-03 47_[+2(9.50e-05)]_25 chr15:68212987-68213067 9.07e-07 15_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_33 chr17:76983862-76983942 1.61e-05 8_[+3(2.44e-05)]_4_[+1(1.32e-05)]_1_\ [+3(2.44e-05)]_2_[+5(3.98e-05)]_33 chr20:347674-347754 1.20e-01 80 chr1:100001493-100001573 7.44e-04 36_[+2(1.49e-05)]_36 chr9:74569738-74569818 1.24e-05 13_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_28 chr19:21803962-21804042 1.52e-02 7_[+2(3.42e-05)]_65 chr11:33216127-33216207 4.07e-02 72_[+1(3.11e-05)] chr7:106485192-106485272 2.77e-03 57_[+2(1.49e-05)]_15 chr7:124605779-124605859 5.56e-03 26_[+2(1.49e-05)]_46 chr2:174217489-174217569 2.29e-03 65_[+4(1.12e-05)]_7 chr6:15198185-15198265 1.68e-05 23_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_18 chr9:102796287-102796367 3.50e-05 18_[+4(1.12e-05)]_16_[+1(4.48e-05)]_\ 30 chr12:132036383-13203646 2.17e-03 5_[+2(1.49e-05)]_67 chr4:39033388-39033468 1.71e-02 43_[+4(4.92e-05)]_29 chr1:223972415-223972495 4.49e-04 56_[+2(1.49e-05)]_16 chr7:135529863-135529943 9.75e-02 80 chrX:16604222-16604302 1.22e-02 16_[+5(3.98e-05)]_56 chr7:158647398-158647478 8.57e-04 37_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 25 chr15:23091456-23091536 1.96e-02 39_[+2(1.49e-05)]_33 chr4:38319000-38319080 1.90e-02 64_[+4(2.56e-05)]_8 chr12:131926652-13192673 4.70e-02 56_[+1(1.32e-05)]_16 chr22:31145408-31145488 3.72e-03 24_[+2(1.49e-05)]_48 chr1:228313030-228313110 7.19e-02 15_[+2(1.49e-05)]_57 chr1:185310668-185310748 9.75e-02 50_[+1(3.11e-05)]_22 chr7:22864515-22864595 1.70e-04 38_[+4(8.31e-05)]_2_[+2(1.49e-05)]_\ 24 chr11:10680425-10680505 4.64e-02 80 chr21:19062538-19062618 1.61e-05 44_[+1(1.32e-05)]_28 chr5:149322906-149322986 3.63e-02 47_[+2(3.42e-05)]_25 chr12:47667087-47667167 5.98e-02 80 chr16:56496076-56496156 2.29e-01 80 chr3:9686021-9686101 3.13e-02 61_[+2(1.49e-05)]_11 chr7:135625275-135625355 3.70e-02 40_[+1(3.11e-05)]_32 chr19:45054404-45054484 1.00e+00 80 chr2:236352403-236352483 3.35e-03 80 chr1:173468973-173469053 2.04e-07 18_[+4(8.31e-05)]_4_[+3(2.44e-05)]_\ 23_[+5(3.98e-05)]_11 chr7:155466313-155466393 9.97e-01 80 chr8:71384955-71385035 2.60e-02 33_[+2(3.42e-05)]_39 chr20:30093797-30093877 4.10e-07 34_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_14 chr7:106927838-106927918 9.04e-03 52_[+1(4.48e-05)]_20 chr22:28940428-28940508 2.01e-04 56_[+4(1.12e-05)]_4_[+3(1.05e-05)]_\ 4 chr1:109060085-109060165 4.38e-03 46_[+1(3.11e-05)]_26 chr5:114720405-114720485 1.62e-02 52_[+1(3.11e-05)]_20 chr17:58753501-58753581 1.85e-02 37_[+2(3.42e-05)]_35 chr1:244465672-244465752 7.67e-01 80 chr6:26550539-26550619 4.36e-03 30_[+2(3.42e-05)]_42 chr15:75462720-75462800 2.62e-02 18_[+1(1.32e-05)]_54 chr22:23781924-23782004 2.38e-06 25_[+3(2.44e-05)]_4_[+1(3.11e-05)]_\ 35 chr9:139675631-139675711 9.50e-03 47_[+2(3.42e-05)]_25 chr2:69961395-69961475 2.41e-03 40_[+1(1.32e-05)]_32 chr10:99387707-99387787 4.74e-03 2_[+1(3.11e-05)]_70 chr1:235573938-235574018 3.49e-05 24_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_17 chr6:158174092-158174172 1.94e-03 18_[+4(9.42e-05)]_21_[+2(3.42e-05)]_\ 25 chr6:107299395-107299475 2.68e-05 14_[+4(1.12e-05)]_15_[+1(1.32e-05)]_\ 35 chr10:105996091-10599617 4.57e-06 41_[+4(1.12e-05)]_16_[+1(1.32e-05)]_\ 7 chr1:16843690-16843770 1.25e-01 80 chr10:17605593-17605673 1.19e-01 80 chr22:28985251-28985331 1.34e-02 35_[+2(3.42e-05)]_37 chr12:26905145-26905225 5.62e-06 30_[+4(1.12e-05)]_16_[+1(1.32e-05)]_\ 18 chr3:138565824-138565904 1.79e-06 4_[+4(1.12e-05)]_16_[+1(3.11e-05)]_\ 11_[+5(3.98e-05)]_25 chr12:109013306-10901338 3.90e-03 36_[+1(1.32e-05)]_36 chr19:16587494-16587574 1.68e-01 27_[+1(4.48e-05)]_45 chr10:71170381-71170461 6.06e-03 38_[+1(1.32e-05)]_34 chr3:178750844-178750924 1.29e-03 63_[+1(3.11e-05)]_9 chr1:211698600-211698680 7.17e-06 35_[+4(1.12e-05)]_16_[+1(1.32e-05)]_\ 13 chr5:154319113-154319193 4.14e-03 80 chr1:150681685-150681765 8.80e-04 40_[+1(3.11e-05)]_32 chr14:102531136-10253121 9.19e-03 36_[+1(1.32e-05)]_36 chr6:30805792-30805872 9.21e-01 80 chr2:68899267-68899347 1.50e-05 3_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_38 chr19:3238226-3238306 6.45e-05 30_[+2(1.49e-05)]_5_[+5(2.52e-05)]_\ 29 chr6:49685251-49685331 5.61e-04 24_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 30 chr15:31689171-31689251 1.84e-01 80 chr2:86117721-86117801 1.41e-02 25_[+2(3.42e-05)]_47 chr18:47956073-47956153 4.80e-03 51_[+2(3.42e-05)]_21 chr6:15210515-15210595 1.61e-03 57_[+1(3.11e-05)]_15 chr7:129129597-129129677 1.34e-01 12_[+1(3.11e-05)]_60 chr20:1182822-1182902 1.87e-06 14_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 11_[+5(3.98e-05)]_27 chr19:35705818-35705898 1.88e-08 31_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_17 chr11:109946655-10994673 8.42e-05 20_[+4(2.56e-05)]_2_[+2(1.49e-05)]_\ 42 chr6:134343852-134343932 6.42e-02 40_[+2(3.42e-05)]_23_[+2(3.42e-05)]_\ 1 chr8:105774656-105774736 1.41e-04 [+2(1.49e-05)]_5_[+5(2.52e-05)]_15_\ [+5(5.88e-05)]_36 chr2:106074706-106074786 4.79e-01 80 chr7:66825025-66825105 1.55e-05 15_[+4(1.12e-05)]_16_[+1(3.11e-05)]_\ 33 chr6:109628110-109628190 3.77e-02 80 chr19:30134624-30134704 2.46e-04 29_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 31 chr7:50602227-50602307 1.53e-02 32_[+1(8.48e-05)]_40 chr2:104086433-104086513 3.32e-05 16_[+3(5.21e-05)]_10_[+2(1.49e-05)]_\ 5_[+5(2.52e-05)]_25 chr12:32207665-32207745 2.72e-06 [+3(2.44e-05)]_4_[+1(1.32e-05)]_11_\ [+5(3.98e-05)]_41 chr7:128540906-128540986 2.80e-07 31_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_17 chr7:150019262-150019342 3.62e-05 39_[+4(1.12e-05)]_16_[+1(1.32e-05)]_\ 9 chr20:49125564-49125644 1.35e-01 41_[+1(3.11e-05)]_31 chr6:161632038-161632118 1.22e-02 56_[+2(1.49e-05)]_16 chr9:131448182-131448262 1.74e-01 80 chr15:68344399-68344479 2.12e-01 80 chr1:236477518-236477598 1.31e-06 4_[+3(2.44e-05)]_4_[+1(1.32e-05)]_\ 10_[+5(3.98e-05)]_38 chr1:246431321-246431401 2.39e-06 31_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_17 chr9:139684134-139684214 1.03e-02 24_[+2(3.42e-05)]_48 chr8:41315643-41315723 3.72e-06 34_[+4(1.12e-05)]_4_[+3(2.44e-05)]_\ 4_[+1(1.32e-05)]_14 chr6:27743114-27743194 8.69e-03 19_[+2(3.42e-05)]_53 chr19:9895632-9895712 1.86e-02 9_[+2(3.42e-05)]_63 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************