******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PTBP1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:19038603-19038683 1.0000 80 chr6:2861664-2861744 1.0000 80 chr19:3603703-3603783 1.0000 80 chr11:64664136-64664216 1.0000 80 chr19:956909-956989 1.0000 80 chr21:45244482-45244562 1.0000 80 chr19:54866558-54866638 1.0000 80 chr19:3013614-3013694 1.0000 80 chr6:137656180-137656260 1.0000 80 chr19:2273133-2273213 1.0000 80 chr8:130838524-130838604 1.0000 80 chr17:46869918-46869998 1.0000 80 chr19:4088228-4088308 1.0000 80 chr1:205778769-205778849 1.0000 80 chr19:1450989-1451069 1.0000 80 chr17:80259607-80259687 1.0000 80 chr19:46544593-46544673 1.0000 80 chr16:85854721-85854801 1.0000 80 chr19:4208047-4208127 1.0000 80 chr6:32052728-32052808 1.0000 80 chr1:2039342-2039422 1.0000 80 chr2:97510251-97510331 1.0000 80 chr1:3437395-3437475 1.0000 80 chr1:32400862-32400942 1.0000 80 chr10:1055283-1055363 1.0000 80 chr15:79320834-79320914 1.0000 80 chr13:96330394-96330474 1.0000 80 chr6:144294904-144294984 1.0000 80 chr17:78009878-78009958 1.0000 80 chr12:12879458-12879538 1.0000 80 chr19:3733628-3733708 1.0000 80 chr6:26464806-26464886 1.0000 80 chr2:27760446-27760526 1.0000 80 chr19:6717148-6717228 1.0000 80 chr19:1054446-1054526 1.0000 80 chr19:2303579-2303659 1.0000 80 chr19:1651440-1651520 1.0000 80 chr7:44753416-44753496 1.0000 80 chr19:18552444-18552524 1.0000 80 chr3:167695992-167696072 1.0000 80 chr2:122290687-122290767 1.0000 80 chr1:159906373-159906453 1.0000 80 chr19:49933654-49933734 1.0000 80 chr16:30789968-30790048 1.0000 80 chr19:17515565-17515645 1.0000 80 chr10:73392097-73392177 1.0000 80 chr19:18304952-18305032 1.0000 80 chr17:56756417-56756497 1.0000 80 chr19:44281362-44281442 1.0000 80 chr19:18229637-18229717 1.0000 80 chr9:117617530-117617610 1.0000 80 chr18:6761697-6761777 1.0000 80 chr17:56404320-56404400 1.0000 80 chr10:6936547-6936627 1.0000 80 chr19:47018591-47018671 1.0000 80 chr19:3732250-3732330 1.0000 80 chr19:30277262-30277342 1.0000 80 chr18:28777805-28777885 1.0000 80 chr12:56893394-56893474 1.0000 80 chr19:7937857-7937937 1.0000 80 chr19:3013016-3013096 1.0000 80 chr2:105945004-105945084 1.0000 80 chr17:46092155-46092235 1.0000 80 chr1:42344576-42344656 1.0000 80 chr19:17033435-17033515 1.0000 80 chr3:184217185-184217265 1.0000 80 chr7:99948984-99949064 1.0000 80 chr8:142403262-142403342 1.0000 80 chr16:81516850-81516930 1.0000 80 chr15:34394501-34394581 1.0000 80 chr19:45090583-45090663 1.0000 80 chr19:41740038-41740118 1.0000 80 chr19:1072579-1072659 1.0000 80 chr11:67805048-67805128 1.0000 80 chr19:853786-853866 1.0000 80 chr2:168791752-168791832 1.0000 80 chr19:16186349-16186429 1.0000 80 chr3:101357427-101357507 1.0000 80 chr15:77897486-77897566 1.0000 80 chr15:57627713-57627793 1.0000 80 chr19:5354585-5354665 1.0000 80 chr7:2510558-2510638 1.0000 80 chr10:72290236-72290316 1.0000 80 chr1:31238546-31238626 1.0000 80 chr16:85475600-85475680 1.0000 80 chr2:69902741-69902821 1.0000 80 chr8:142569352-142569432 1.0000 80 chr1:198127510-198127590 1.0000 80 chr5:176873262-176873342 1.0000 80 chr11:69197661-69197741 1.0000 80 chr1:15598604-15598684 1.0000 80 chr20:32259778-32259858 1.0000 80 chr16:88484659-88484739 1.0000 80 chr16:88529987-88530067 1.0000 80 chr16:1269402-1269482 1.0000 80 chr21:34607000-34607080 1.0000 80 chr21:45357335-45357415 1.0000 80 chr1:21640138-21640218 1.0000 80 chr1:47794819-47794899 1.0000 80 chr8:142067687-142067767 1.0000 80 chr19:3268966-3269046 1.0000 80 chr21:35882914-35882994 1.0000 80 chr1:6154983-6155063 1.0000 80 chr11:34380890-34380970 1.0000 80 chr19:13323856-13323936 1.0000 80 chr16:10911524-10911604 1.0000 80 chr7:75849633-75849713 1.0000 80 chr16:31006019-31006099 1.0000 80 chr6:34496233-34496313 1.0000 80 chr22:39618152-39618232 1.0000 80 chr16:85599633-85599713 1.0000 80 chr18:1464150-1464230 1.0000 80 chr6:14967644-14967724 1.0000 80 chr21:43780602-43780682 1.0000 80 chr1:31228353-31228433 1.0000 80 chr19:513599-513679 1.0000 80 chr21:46289891-46289971 1.0000 80 chr19:45539164-45539244 1.0000 80 chr19:13389025-13389105 1.0000 80 chr19:7711057-7711137 1.0000 80 chr19:18997961-18998041 1.0000 80 chr19:18507891-18507971 1.0000 80 chr1:12249259-12249339 1.0000 80 chr4:6776835-6776915 1.0000 80 chr3:9993465-9993545 1.0000 80 chr19:10415873-10415953 1.0000 80 chr16:85167876-85167956 1.0000 80 chr3:13290312-13290392 1.0000 80 chr10:47082950-47083030 1.0000 80 chr6:26389633-26389713 1.0000 80 chr20:48654307-48654387 1.0000 80 chr2:11485289-11485369 1.0000 80 chr20:31156971-31157051 1.0000 80 chr6:34485341-34485421 1.0000 80 chr6:43237062-43237142 1.0000 80 chr2:64855336-64855416 1.0000 80 chr4:144270000-144270080 1.0000 80 chr19:4238982-4239062 1.0000 80 chr9:139563581-139563661 1.0000 80 chr1:150480942-150481022 1.0000 80 chr19:1027529-1027609 1.0000 80 chr7:101953733-101953813 1.0000 80 chr20:34710707-34710787 1.0000 80 chr16:30020182-30020262 1.0000 80 chr19:3321081-3321161 1.0000 80 chr19:55166498-55166578 1.0000 80 chr19:4874103-4874183 1.0000 80 chr1:16516751-16516831 1.0000 80 chrX:1539315-1539395 1.0000 80 chr9:101017234-101017314 1.0000 80 chr7:5465254-5465334 1.0000 80 chr19:18540778-18540858 1.0000 80 chr17:43305152-43305232 1.0000 80 chr19:10686155-10686235 1.0000 80 chr1:22236827-22236907 1.0000 80 chr19:18340452-18340532 1.0000 80 chr19:3308294-3308374 1.0000 80 chr9:139489065-139489145 1.0000 80 chr1:27216116-27216196 1.0000 80 chr7:101206587-101206667 1.0000 80 chr19:3234933-3235013 1.0000 80 chr16:85411033-85411113 1.0000 80 chr1:17331665-17331745 1.0000 80 chr9:131962702-131962782 1.0000 80 chr19:16073269-16073349 1.0000 80 chr5:1156991-1157071 1.0000 80 chr12:124910340-12491042 1.0000 80 chr3:14533229-14533309 1.0000 80 chr19:46172204-46172284 1.0000 80 chr12:113590199-11359027 1.0000 80 chr19:1280202-1280282 1.0000 80 chr19:17515764-17515844 1.0000 80 chr19:17229900-17229980 1.0000 80 chr19:907633-907713 1.0000 80 chr16:81742437-81742517 1.0000 80 chr1:22228979-22229059 1.0000 80 chr5:138715994-138716074 1.0000 80 chr20:654031-654111 1.0000 80 chr7:45007797-45007877 1.0000 80 chr22:21959285-21959365 1.0000 80 chr19:5312202-5312282 1.0000 80 chr7:75401424-75401504 1.0000 80 chr17:37773668-37773748 1.0000 80 chr19:44281561-44281641 1.0000 80 chr19:13955599-13955679 1.0000 80 chr1:21923277-21923357 1.0000 80 chr1:27998803-27998883 1.0000 80 chr12:58240529-58240609 1.0000 80 chr19:1850963-1851043 1.0000 80 chr15:27379801-27379881 1.0000 80 chr1:11125193-11125273 1.0000 80 chr10:1228282-1228362 1.0000 80 chr16:85372367-85372447 1.0000 80 chr19:955151-955231 1.0000 80 chr2:219264519-219264599 1.0000 80 chr9:139561740-139561820 1.0000 80 chr19:17033032-17033112 1.0000 80 chr19:4585695-4585775 1.0000 80 chr6:34540497-34540577 1.0000 80 chr11:119194294-11919437 1.0000 80 chr1:27899769-27899849 1.0000 80 chr20:667165-667245 1.0000 80 chr1:228462931-228463011 1.0000 80 chr5:54522333-54522413 1.0000 80 chr12:125106918-12510699 1.0000 80 chr19:3015463-3015543 1.0000 80 chr19:4578696-4578776 1.0000 80 chr2:10626936-10627016 1.0000 80 chr3:10461350-10461430 1.0000 80 chr19:16251915-16251995 1.0000 80 chr11:64017732-64017812 1.0000 80 chr19:17635589-17635669 1.0000 80 chr16:4411777-4411857 1.0000 80 chr15:68520984-68521064 1.0000 80 chr20:56171582-56171662 1.0000 80 chr16:85679870-85679950 1.0000 80 chr17:17656003-17656083 1.0000 80 chr19:4557798-4557878 1.0000 80 chr21:36396513-36396593 1.0000 80 chr5:169838276-169838356 1.0000 80 chr1:895919-895999 1.0000 80 chr8:126429808-126429888 1.0000 80 chr17:76348302-76348382 1.0000 80 chr19:48234344-48234424 1.0000 80 chr1:8905342-8905422 1.0000 80 chr19:6772227-6772307 1.0000 80 chr19:771437-771517 1.0000 80 chr16:85626349-85626429 1.0000 80 chr19:49075167-49075247 1.0000 80 chr1:201911463-201911543 1.0000 80 chr8:142420751-142420831 1.0000 80 chr2:191399714-191399794 1.0000 80 chr5:173289080-173289160 1.0000 80 chr20:44587414-44587494 1.0000 80 chr12:114258855-11425893 1.0000 80 chr11:73025508-73025588 1.0000 80 chr17:25912311-25912391 1.0000 80 chr16:88560338-88560418 1.0000 80 chr1:15152095-15152175 1.0000 80 chr11:66754675-66754755 1.0000 80 chr1:181070215-181070295 1.0000 80 chr19:17402818-17402898 1.0000 80 chr16:88532761-88532841 1.0000 80 chr19:17033235-17033315 1.0000 80 chr3:128586462-128586542 1.0000 80 chr7:512391-512471 1.0000 80 chr17:42634636-42634716 1.0000 80 chr19:10728249-10728329 1.0000 80 chr1:20729211-20729291 1.0000 80 chr22:29703244-29703324 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PTBP1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PTBP1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.221 C 0.286 G 0.268 T 0.226 Background letter frequencies (from file dataset with add-one prior applied): A 0.221 C 0.286 G 0.268 T 0.226 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTTTCWAG MEME-1 width = 8 sites = 49 llr = 431 E-value = 8.0e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTTCWAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::5a1 pos.-specific C :11:a2:: probability G a1:::::9 matrix T :89a:3:: bits 2.2 2.0 * * * 1.7 * *** * 1.5 * *** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (12.7 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTTCAAG consensus T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:17515764-17515844 20 1.16e-05 CCCACGAGGA GTTTCAAG GCCCCCGACA chr19:46172204-46172284 53 1.16e-05 TCAGATGGGC GTTTCAAG TACCCCACTA chr7:5465254-5465334 2 1.16e-05 A GTTTCAAG TTGCCCTTCC chr16:88529987-88530067 39 1.16e-05 cgcttagaga gtttCAAG GTCAGCCCCA chr1:198127510-198127590 42 1.16e-05 GGAATTTACA GTTTCAAG GCTATGCACA chr10:6936547-6936627 65 1.16e-05 TGGAATAGCA GTTTCAAG CATACTAC chr19:17515565-17515645 64 1.16e-05 CCCAGCGAGA GTTTCAAG ATCCCCCAT chr19:3733628-3733708 35 1.16e-05 GGAATTGTCT GTTTCAAG TTCCCCCACA chr1:32400862-32400942 39 1.16e-05 CCCCAAGAGA GTTTCAAG GCATAATCTC chr1:3437395-3437475 12 1.16e-05 GTTCAAGTAC GTTTCAAG GCCCCTCTGG chr2:97510251-97510331 15 1.16e-05 CCAACTTGCA GTTTCAAG GCTGCCCTTC chr6:32052728-32052808 42 1.16e-05 CTGAATGAGA GTTTCAAG CCTCCCTGCT chr19:4208047-4208127 63 1.16e-05 ACTCAGAACA GTTTCAAG GAGCCCCAGG chr16:85854721-85854801 26 1.16e-05 ctgggcgact gttTCAAG GCGCCACCCC chr19:46544593-46544673 45 1.16e-05 CCACCCTGAA GTTTCAAG GAGTCCCTCT chr19:3013614-3013694 26 1.16e-05 AATAAAGTGA GTTTCAAG GCCCTCCCCT chr19:956909-956989 42 1.16e-05 CTAATTGGTG GTTTCAAG GCTCCCCACT chr19:55166498-55166578 63 2.34e-05 TCCGCTGGCT GTTTCTAG AGACCCGGCT chr18:1464150-1464230 59 2.34e-05 GCAATTGTAG GTTTCTAG TGTTCCCCTG chr17:46092155-46092235 64 2.34e-05 AGATCCTGCT GTTTCTAG GTTCCCCCA chr3:167695992-167696072 55 2.34e-05 agctgtggca gtttctag ccTCCCCTGC chr6:144294904-144294984 28 2.34e-05 CAGAGCTGCA GTTTCTAG GGTTACCTTA chr19:4088228-4088308 67 2.34e-05 CTACAAAGTA GTTTCTAG AAGTCT chr21:45244482-45244562 48 2.34e-05 CAAAATATCT GTTTCTAG AAGTGTTGGC chr10:1228282-1228362 48 3.84e-05 TGGGCCGGGT GTTTCCAG ACTCCCCACA chr12:58240529-58240609 5 3.84e-05 GGCG GTTTCCAG GCTCCCCCCT chr6:26389633-26389713 28 3.84e-05 ttgtctggca gtttccag gactcccagg chr2:69902741-69902821 25 3.84e-05 cagaatgaca gtttccag gggctgcggg chr18:28777805-28777885 26 3.84e-05 ACAAAGAACA GTTTCCAG GGTGGGTGGG chr6:26464806-26464886 41 3.84e-05 atctctggca gtttccag gacccccaga chr12:56893394-56893474 64 6.68e-05 AATGGACCAG GCTTCAAG GGAGCCTGT chr16:30789968-30790048 17 6.68e-05 GGCTGTGATG GCTTCAAG TTTCCCCACC chr19:16073269-16073349 51 9.10e-05 AGGCCAAGGA GTCTCAAG GCGGTCGCTG chr17:80259607-80259687 50 9.10e-05 CCACTGTGCT GTCTCAAG GCCCCCCGCA chr1:228462931-228463011 31 1.20e-04 AGTCATGGCA GGTTCTAG AGTAAGGGAG chr19:1027529-1027609 34 1.20e-04 GAGCACTTGT GGTTCTAG CTCAGAGAGG chr19:16186349-16186429 23 1.20e-04 agccatagca ggttctag gcagaaagag chr11:64664136-64664216 25 1.20e-04 CCCAATGGCA GCTTCTAG GTTGCCCAAG chr1:47794819-47794899 31 1.45e-04 tgctgtggca gtttctaa accgaggttt chr19:3732250-3732330 18 1.45e-04 GGGGTTGTCT GTTTCTAA TACCCTCTAG chr19:54866558-54866638 40 1.45e-04 ATAAAGCTGG GTCTCTAG AAACAGCCAG chr7:75401424-75401504 6 1.73e-04 TGGCA GTTCCAAG GTGGAGACTC chr11:69197661-69197741 11 1.73e-04 TTGCTTGTCA GTTTCAGG AGACTCAGAG chr19:4874103-4874183 46 2.10e-04 agccacagta ggttccag agcaggagca chr6:137656180-137656260 21 2.10e-04 agaaagaggg gcttccag gccctcatgc chr19:4238982-4239062 18 2.42e-04 TTCCACCTGg gtctccag tcaaaagtca chr19:3603703-3603783 68 2.42e-04 ACAGCTGGCT GTTTCCAA TCCCC chr1:150480942-150481022 10 2.71e-04 AGGAGAGGG GTTCCTAG AAACTGCTGC chr10:47082950-47083030 35 2.71e-04 tgcaagtaat gtttctgg acgaaCTtat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:17515764-17515844 1.2e-05 19_[+1]_53 chr19:46172204-46172284 1.2e-05 52_[+1]_20 chr7:5465254-5465334 1.2e-05 1_[+1]_71 chr16:88529987-88530067 1.2e-05 38_[+1]_34 chr1:198127510-198127590 1.2e-05 41_[+1]_31 chr10:6936547-6936627 1.2e-05 64_[+1]_8 chr19:17515565-17515645 1.2e-05 63_[+1]_9 chr19:3733628-3733708 1.2e-05 34_[+1]_38 chr1:32400862-32400942 1.2e-05 38_[+1]_34 chr1:3437395-3437475 1.2e-05 11_[+1]_61 chr2:97510251-97510331 1.2e-05 14_[+1]_58 chr6:32052728-32052808 1.2e-05 41_[+1]_31 chr19:4208047-4208127 1.2e-05 62_[+1]_10 chr16:85854721-85854801 1.2e-05 25_[+1]_47 chr19:46544593-46544673 1.2e-05 44_[+1]_28 chr19:3013614-3013694 1.2e-05 25_[+1]_47 chr19:956909-956989 1.2e-05 41_[+1]_31 chr19:55166498-55166578 2.3e-05 62_[+1]_10 chr18:1464150-1464230 2.3e-05 58_[+1]_14 chr17:46092155-46092235 2.3e-05 63_[+1]_9 chr3:167695992-167696072 2.3e-05 54_[+1]_18 chr6:144294904-144294984 2.3e-05 27_[+1]_45 chr19:4088228-4088308 2.3e-05 66_[+1]_6 chr21:45244482-45244562 2.3e-05 47_[+1]_25 chr10:1228282-1228362 3.8e-05 47_[+1]_25 chr12:58240529-58240609 3.8e-05 4_[+1]_68 chr6:26389633-26389713 3.8e-05 27_[+1]_45 chr2:69902741-69902821 3.8e-05 24_[+1]_48 chr18:28777805-28777885 3.8e-05 25_[+1]_47 chr6:26464806-26464886 3.8e-05 40_[+1]_32 chr12:56893394-56893474 6.7e-05 63_[+1]_9 chr16:30789968-30790048 6.7e-05 16_[+1]_56 chr19:16073269-16073349 9.1e-05 50_[+1]_22 chr17:80259607-80259687 9.1e-05 49_[+1]_23 chr1:228462931-228463011 0.00012 30_[+1]_42 chr19:1027529-1027609 0.00012 33_[+1]_39 chr19:16186349-16186429 0.00012 22_[+1]_50 chr11:64664136-64664216 0.00012 24_[+1]_48 chr1:47794819-47794899 0.00014 30_[+1]_42 chr19:3732250-3732330 0.00014 17_[+1]_55 chr19:54866558-54866638 0.00014 39_[+1]_33 chr7:75401424-75401504 0.00017 5_[+1]_67 chr11:69197661-69197741 0.00017 10_[+1]_62 chr19:4874103-4874183 0.00021 45_[+1]_27 chr6:137656180-137656260 0.00021 20_[+1]_52 chr19:4238982-4239062 0.00024 17_[+1]_55 chr19:3603703-3603783 0.00024 67_[+1]_5 chr1:150480942-150481022 0.00027 9_[+1]_63 chr10:47082950-47083030 0.00027 34_[+1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTTCWAG width=8 seqs=49 chr19:17515764-17515844 ( 20) GTTTCAAG 1 chr19:46172204-46172284 ( 53) GTTTCAAG 1 chr7:5465254-5465334 ( 2) GTTTCAAG 1 chr16:88529987-88530067 ( 39) GTTTCAAG 1 chr1:198127510-198127590 ( 42) GTTTCAAG 1 chr10:6936547-6936627 ( 65) GTTTCAAG 1 chr19:17515565-17515645 ( 64) GTTTCAAG 1 chr19:3733628-3733708 ( 35) GTTTCAAG 1 chr1:32400862-32400942 ( 39) GTTTCAAG 1 chr1:3437395-3437475 ( 12) GTTTCAAG 1 chr2:97510251-97510331 ( 15) GTTTCAAG 1 chr6:32052728-32052808 ( 42) GTTTCAAG 1 chr19:4208047-4208127 ( 63) GTTTCAAG 1 chr16:85854721-85854801 ( 26) GTTTCAAG 1 chr19:46544593-46544673 ( 45) GTTTCAAG 1 chr19:3013614-3013694 ( 26) GTTTCAAG 1 chr19:956909-956989 ( 42) GTTTCAAG 1 chr19:55166498-55166578 ( 63) GTTTCTAG 1 chr18:1464150-1464230 ( 59) GTTTCTAG 1 chr17:46092155-46092235 ( 64) GTTTCTAG 1 chr3:167695992-167696072 ( 55) GTTTCTAG 1 chr6:144294904-144294984 ( 28) GTTTCTAG 1 chr19:4088228-4088308 ( 67) GTTTCTAG 1 chr21:45244482-45244562 ( 48) GTTTCTAG 1 chr10:1228282-1228362 ( 48) GTTTCCAG 1 chr12:58240529-58240609 ( 5) GTTTCCAG 1 chr6:26389633-26389713 ( 28) GTTTCCAG 1 chr2:69902741-69902821 ( 25) GTTTCCAG 1 chr18:28777805-28777885 ( 26) GTTTCCAG 1 chr6:26464806-26464886 ( 41) GTTTCCAG 1 chr12:56893394-56893474 ( 64) GCTTCAAG 1 chr16:30789968-30790048 ( 17) GCTTCAAG 1 chr19:16073269-16073349 ( 51) GTCTCAAG 1 chr17:80259607-80259687 ( 50) GTCTCAAG 1 chr1:228462931-228463011 ( 31) GGTTCTAG 1 chr19:1027529-1027609 ( 34) GGTTCTAG 1 chr19:16186349-16186429 ( 23) GGTTCTAG 1 chr11:64664136-64664216 ( 25) GCTTCTAG 1 chr1:47794819-47794899 ( 31) GTTTCTAA 1 chr19:3732250-3732330 ( 18) GTTTCTAA 1 chr19:54866558-54866638 ( 40) GTCTCTAG 1 chr7:75401424-75401504 ( 6) GTTCCAAG 1 chr11:69197661-69197741 ( 11) GTTTCAGG 1 chr19:4874103-4874183 ( 46) GGTTCCAG 1 chr6:137656180-137656260 ( 21) GCTTCCAG 1 chr19:4238982-4239062 ( 18) GTCTCCAG 1 chr19:3603703-3603783 ( 68) GTTTCCAA 1 chr1:150480942-150481022 ( 10) GTTCCTAG 1 chr10:47082950-47083030 ( 35) GTTTCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.65557 E= 8.0e-027 -1226 -1226 190 -1226 -1226 -181 -171 189 -1226 -181 -1226 202 -1226 -280 -1226 208 -1226 181 -1226 -1226 109 -48 -1226 53 212 -1226 -271 -1226 -185 -1226 181 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 8.0e-027 0.000000 0.000000 1.000000 0.000000 0.000000 0.081633 0.081633 0.836735 0.000000 0.081633 0.000000 0.918367 0.000000 0.040816 0.000000 0.959184 0.000000 1.000000 0.000000 0.000000 0.469388 0.204082 0.000000 0.326531 0.959184 0.000000 0.040816 0.000000 0.061224 0.000000 0.938776 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWAG MEME-1 regular expression -------------------------------------------------------------------------------- GTTTC[ATC]AG -------------------------------------------------------------------------------- Time 4.96 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCYCTG MEME-2 width = 8 sites = 61 llr = 493 E-value = 1.1e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCYCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::2:: pos.-specific C a8:968:: probability G :::1:::a matrix T :1a14:a: bits 2.2 * 2.0 * * 1.7 * * * 1.5 * * ** Relative 1.3 * * *** Entropy 1.1 * ** *** (11.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:37773668-37773748 53 2.62e-05 accaggaagt cctccctg atgtcccctg chr19:1280202-1280282 70 2.62e-05 TCCAGGAAGT CCTCCCTG ATT chr1:27216116-27216196 5 2.62e-05 ctgt cctccctg tctcagttac chr20:31156971-31157051 17 2.62e-05 tcagggaggg cctccctg aggaggtgac chr19:7711057-7711137 58 2.62e-05 CCCCTGCTGC CCTCCCTG CCCTGCCTGT chr8:142067687-142067767 68 2.62e-05 tctgtgcagc cctccctg attgc chr17:56404320-56404400 55 2.62e-05 CCCTCCTGCT CCTCCCTG ATCCTTCCCA chr6:32052728-32052808 50 2.62e-05 GAGTTTCAAG CCTCCCTG CTGCAGCATC chr22:29703244-29703324 24 4.69e-05 GGCCCCGCAC CCTCTCTG GGCCCAGAGC chr19:49075167-49075247 62 4.69e-05 actatattaa cctctctg ggcctccatt chr16:85626349-85626429 36 4.69e-05 agttactgaa cctctctg tgcctcagtc chr8:126429808-126429888 44 4.69e-05 agtgactcag cctctctg agcctccctt chr20:56171582-56171662 52 4.69e-05 agtagcttaa cctctctg tgcctcagtt chr16:4411777-4411857 3 4.69e-05 aa cctctctg tgcctcttct chr11:64017732-64017812 38 4.69e-05 agtcccttcc cctctctg ggcctcaagt chr2:10626936-10627016 42 4.69e-05 agtcacttgg cctctctg agcctcaaac chr19:17229900-17229980 38 4.69e-05 agtcacttga cctctctg ttctgcctcc chr12:124910340-12491042 49 4.69e-05 actgtctgaa cctctctg agcctccgtg chr16:85411033-85411113 56 4.69e-05 agttacctac cctctctg tgccttagct chr19:18540778-18540858 33 4.69e-05 gagtgctcaa cctctctg agcccaagtG chr2:64855336-64855416 36 4.69e-05 agctgcttaa cctctctg agccggctgc chr4:6776835-6776915 45 4.69e-05 caccactcac cctctctg ggctttgggt chr20:32259778-32259858 72 4.69e-05 acttgcttca cctctctg g chr1:15598604-15598684 66 4.69e-05 agtcgcttaa cctctctg atcctca chr19:41740038-41740118 56 4.69e-05 agttgctgaa cctctctg ggccttggct chr19:18229637-18229717 15 4.69e-05 agctccttaa cctctctg tgcttgggtt chr19:10728249-10728329 66 6.71e-05 GCTCAAACAC CCTCCATG GCTCCCA chr19:771437-771517 28 6.71e-05 tgcccacagc cctccatg gctcccattt chr15:68520984-68521064 41 6.71e-05 agtgccactt cctccatg aagccctcca chr19:13955599-13955679 30 6.71e-05 GAGAACACCT CCTCCATG CTGGCCTCTG chr19:13323856-13323936 37 6.71e-05 tgcttagaac cctccatg gctcccactt chr16:30789968-30790048 72 6.71e-05 TCCCATCTGA CCTCCATG T chr9:101017234-101017314 33 8.78e-05 atgggtctgt cttccctg ccttgtggga chr19:4238982-4239062 51 8.78e-05 tccgagaagc cttccctg actaccccat chr2:105945004-105945084 67 8.78e-05 GCAGTAGGAT CTTCCCTG CACACC chr19:3013016-3013096 72 8.78e-05 CCGACATACT CTTCCCTG G chr9:117617530-117617610 45 8.78e-05 cggggtgcca cttccctg aaatgtggat chr2:97510251-97510331 34 8.78e-05 CTGCCCTTCC CTTCCCTG TGCTGTGGGT chr19:955151-955231 71 1.40e-04 CCTGCTTTCC CATCCCTG GG chr19:5312202-5312282 58 1.40e-04 CTGAAAAAGA CATCCCTG GCTGTGTGCG chr17:76348302-76348382 28 1.77e-04 tcagtttctc catctctg aaatgggtgt chr7:5465254-5465334 14 1.77e-04 TTCAAGTTGC CCTTCCTG GAGCTTCCTG chrX:1539315-1539395 27 1.77e-04 CCCTGGGGCT CATCTCTG CATCACACAC chr9:139563581-139563661 35 1.77e-04 TCAGAGTCCT CCTTCCTG GGTGTGGGAG chr19:30277262-30277342 53 1.77e-04 ATGCTGGAGG CCTTCCTG GAGGAGGTGA chr18:6761697-6761777 31 1.77e-04 agcccagcct ccttcctg aatagtggtt chr6:26464806-26464886 30 1.77e-04 ggggaaggaa catctctg gcagtttcca chr7:101206587-101206667 24 1.93e-04 CGTAGAATGA CCTTTCTG AAGTGCAAGC chr20:44587414-44587494 12 2.18e-04 cctcctgctt cctgcctg ggatgtggct chr19:907633-907713 53 2.18e-04 CCCACAAGGA CCTGCCTG GTCCTTCCCC chr1:31238546-31238626 19 2.18e-04 CAGAACCAGC CCTGCCTG GCTCAAGAAC chr19:47018591-47018671 18 2.18e-04 TGTTCCTCCC CCTGCCTG GAACCTGCTA chr19:4578696-4578776 32 2.53e-04 gctctataac cttccatg gctccccatt chr1:31228353-31228433 58 2.53e-04 TCCAAGAAGT CTTCCATG ATTGCTAGGG chr19:3234933-3235013 59 2.75e-04 gtggctccca cctccctt agagtcaaag chr2:27760446-27760526 6 2.75e-04 GTAGC CCTCCCTT GAAACTAACT chr19:1072579-1072659 34 2.88e-04 gttctaacac cttctatg gctccctatt chr1:20729211-20729291 55 3.06e-04 TTCCACCTTA CCTCTCTT TGGctgccac chr9:131962702-131962782 51 3.21e-04 ccgggcctca catccatg ttccaggcaa chr7:99948984-99949064 4 4.10e-04 TTT CCTCCCGG TCACCTCCAA chr8:130838524-130838604 15 4.10e-04 ACCATCGGCT CCTCCCGG TTGTAGGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:37773668-37773748 2.6e-05 52_[+2]_20 chr19:1280202-1280282 2.6e-05 69_[+2]_3 chr1:27216116-27216196 2.6e-05 4_[+2]_68 chr20:31156971-31157051 2.6e-05 16_[+2]_56 chr19:7711057-7711137 2.6e-05 57_[+2]_15 chr8:142067687-142067767 2.6e-05 67_[+2]_5 chr17:56404320-56404400 2.6e-05 54_[+2]_18 chr6:32052728-32052808 2.6e-05 49_[+2]_23 chr22:29703244-29703324 4.7e-05 23_[+2]_49 chr19:49075167-49075247 4.7e-05 61_[+2]_11 chr16:85626349-85626429 4.7e-05 35_[+2]_37 chr8:126429808-126429888 4.7e-05 43_[+2]_29 chr20:56171582-56171662 4.7e-05 51_[+2]_21 chr16:4411777-4411857 4.7e-05 2_[+2]_70 chr11:64017732-64017812 4.7e-05 37_[+2]_35 chr2:10626936-10627016 4.7e-05 41_[+2]_31 chr19:17229900-17229980 4.7e-05 37_[+2]_35 chr12:124910340-12491042 4.7e-05 48_[+2]_24 chr16:85411033-85411113 4.7e-05 55_[+2]_17 chr19:18540778-18540858 4.7e-05 32_[+2]_40 chr2:64855336-64855416 4.7e-05 35_[+2]_37 chr4:6776835-6776915 4.7e-05 44_[+2]_28 chr20:32259778-32259858 4.7e-05 71_[+2]_1 chr1:15598604-15598684 4.7e-05 65_[+2]_7 chr19:41740038-41740118 4.7e-05 55_[+2]_17 chr19:18229637-18229717 4.7e-05 14_[+2]_58 chr19:10728249-10728329 6.7e-05 65_[+2]_7 chr19:771437-771517 6.7e-05 27_[+2]_45 chr15:68520984-68521064 6.7e-05 40_[+2]_32 chr19:13955599-13955679 6.7e-05 29_[+2]_43 chr19:13323856-13323936 6.7e-05 36_[+2]_36 chr16:30789968-30790048 6.7e-05 71_[+2]_1 chr9:101017234-101017314 8.8e-05 32_[+2]_40 chr19:4238982-4239062 8.8e-05 50_[+2]_22 chr2:105945004-105945084 8.8e-05 66_[+2]_6 chr19:3013016-3013096 8.8e-05 71_[+2]_1 chr9:117617530-117617610 8.8e-05 44_[+2]_28 chr2:97510251-97510331 8.8e-05 33_[+2]_39 chr19:955151-955231 0.00014 70_[+2]_2 chr19:5312202-5312282 0.00014 57_[+2]_15 chr17:76348302-76348382 0.00018 27_[+2]_45 chr7:5465254-5465334 0.00018 13_[+2]_59 chrX:1539315-1539395 0.00018 26_[+2]_46 chr9:139563581-139563661 0.00018 34_[+2]_38 chr19:30277262-30277342 0.00018 52_[+2]_20 chr18:6761697-6761777 0.00018 30_[+2]_42 chr6:26464806-26464886 0.00018 29_[+2]_43 chr7:101206587-101206667 0.00019 23_[+2]_49 chr20:44587414-44587494 0.00022 11_[+2]_61 chr19:907633-907713 0.00022 52_[+2]_20 chr1:31238546-31238626 0.00022 18_[+2]_54 chr19:47018591-47018671 0.00022 17_[+2]_55 chr19:4578696-4578776 0.00025 31_[+2]_41 chr1:31228353-31228433 0.00025 57_[+2]_15 chr19:3234933-3235013 0.00028 58_[+2]_14 chr2:27760446-27760526 0.00028 5_[+2]_67 chr19:1072579-1072659 0.00029 33_[+2]_39 chr1:20729211-20729291 0.00031 54_[+2]_18 chr9:131962702-131962782 0.00032 50_[+2]_22 chr7:99948984-99949064 0.00041 3_[+2]_69 chr8:130838524-130838604 0.00041 14_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCYCTG width=8 seqs=61 chr17:37773668-37773748 ( 53) CCTCCCTG 1 chr19:1280202-1280282 ( 70) CCTCCCTG 1 chr1:27216116-27216196 ( 5) CCTCCCTG 1 chr20:31156971-31157051 ( 17) CCTCCCTG 1 chr19:7711057-7711137 ( 58) CCTCCCTG 1 chr8:142067687-142067767 ( 68) CCTCCCTG 1 chr17:56404320-56404400 ( 55) CCTCCCTG 1 chr6:32052728-32052808 ( 50) CCTCCCTG 1 chr22:29703244-29703324 ( 24) CCTCTCTG 1 chr19:49075167-49075247 ( 62) CCTCTCTG 1 chr16:85626349-85626429 ( 36) CCTCTCTG 1 chr8:126429808-126429888 ( 44) CCTCTCTG 1 chr20:56171582-56171662 ( 52) CCTCTCTG 1 chr16:4411777-4411857 ( 3) CCTCTCTG 1 chr11:64017732-64017812 ( 38) CCTCTCTG 1 chr2:10626936-10627016 ( 42) CCTCTCTG 1 chr19:17229900-17229980 ( 38) CCTCTCTG 1 chr12:124910340-12491042 ( 49) CCTCTCTG 1 chr16:85411033-85411113 ( 56) CCTCTCTG 1 chr19:18540778-18540858 ( 33) CCTCTCTG 1 chr2:64855336-64855416 ( 36) CCTCTCTG 1 chr4:6776835-6776915 ( 45) CCTCTCTG 1 chr20:32259778-32259858 ( 72) CCTCTCTG 1 chr1:15598604-15598684 ( 66) CCTCTCTG 1 chr19:41740038-41740118 ( 56) CCTCTCTG 1 chr19:18229637-18229717 ( 15) CCTCTCTG 1 chr19:10728249-10728329 ( 66) CCTCCATG 1 chr19:771437-771517 ( 28) CCTCCATG 1 chr15:68520984-68521064 ( 41) CCTCCATG 1 chr19:13955599-13955679 ( 30) CCTCCATG 1 chr19:13323856-13323936 ( 37) CCTCCATG 1 chr16:30789968-30790048 ( 72) CCTCCATG 1 chr9:101017234-101017314 ( 33) CTTCCCTG 1 chr19:4238982-4239062 ( 51) CTTCCCTG 1 chr2:105945004-105945084 ( 67) CTTCCCTG 1 chr19:3013016-3013096 ( 72) CTTCCCTG 1 chr9:117617530-117617610 ( 45) CTTCCCTG 1 chr2:97510251-97510331 ( 34) CTTCCCTG 1 chr19:955151-955231 ( 71) CATCCCTG 1 chr19:5312202-5312282 ( 58) CATCCCTG 1 chr17:76348302-76348382 ( 28) CATCTCTG 1 chr7:5465254-5465334 ( 14) CCTTCCTG 1 chrX:1539315-1539395 ( 27) CATCTCTG 1 chr9:139563581-139563661 ( 35) CCTTCCTG 1 chr19:30277262-30277342 ( 53) CCTTCCTG 1 chr18:6761697-6761777 ( 31) CCTTCCTG 1 chr6:26464806-26464886 ( 30) CATCTCTG 1 chr7:101206587-101206667 ( 24) CCTTTCTG 1 chr20:44587414-44587494 ( 12) CCTGCCTG 1 chr19:907633-907713 ( 53) CCTGCCTG 1 chr1:31238546-31238626 ( 19) CCTGCCTG 1 chr19:47018591-47018671 ( 18) CCTGCCTG 1 chr19:4578696-4578776 ( 32) CTTCCATG 1 chr1:31228353-31228433 ( 58) CTTCCATG 1 chr19:3234933-3235013 ( 59) CCTCCCTT 1 chr2:27760446-27760526 ( 6) CCTCCCTT 1 chr19:1072579-1072659 ( 34) CTTCTATG 1 chr1:20729211-20729291 ( 55) CCTCTCTT 1 chr9:131962702-131962782 ( 51) CATCCATG 1 chr7:99948984-99949064 ( 4) CCTCCCGG 1 chr8:130838524-130838604 ( 15) CCTCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.9123 E= 1.1e-022 -1257 181 -1257 -1257 -117 140 -1257 -62 -1257 -1257 -1257 214 -1257 158 -203 -146 -1257 109 -1257 80 -43 155 -1257 -1257 -1257 -1257 -303 210 -1257 -1257 183 -220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.1e-022 0.000000 1.000000 0.000000 0.000000 0.098361 0.754098 0.000000 0.147541 0.000000 0.000000 0.000000 1.000000 0.000000 0.852459 0.065574 0.081967 0.000000 0.606557 0.000000 0.393443 0.163934 0.836066 0.000000 0.000000 0.000000 0.000000 0.032787 0.967213 0.000000 0.000000 0.950820 0.049180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYCTG MEME-2 regular expression -------------------------------------------------------------------------------- CCTC[CT]CTG -------------------------------------------------------------------------------- Time 8.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGTGTG MEME-3 width = 8 sites = 32 llr = 302 E-value = 2.4e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1:2: pos.-specific C :a:2:::: probability G a::8:a1a matrix T ::a:9:7: bits 2.2 * 2.0 * * * * 1.7 *** ** * 1.5 *** ** * Relative 1.3 ****** * Entropy 1.1 ****** * (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGTGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:49075167-49075247 34 1.70e-05 TATGATGGCT gctgtgtg accttagggg chr16:85626349-85626429 8 1.70e-05 tttacaa gctgtgtg accttgggca chr8:126429808-126429888 16 1.70e-05 agtcttttta gctgtgtg accttgagaa chr20:56171582-56171662 24 1.70e-05 ccattcactg gctgtgtg accttgggca chr11:64017732-64017812 10 1.70e-05 tcctaagaa gctgtgtg accttgggca chr2:10626936-10627016 14 1.70e-05 ttctgttcat gctgtgtg accctgggca chr19:5312202-5312282 66 1.70e-05 GACATCCCTG GCTGTGTG CGTCCTG chr7:45007797-45007877 56 1.70e-05 ccacatgcat gctgtgtg actttgccta chr19:17229900-17229980 10 1.70e-05 tgcctgcat gctgtgtg acctgcagca chr12:124910340-12491042 21 1.70e-05 ttgtgtgcat gctgtgtg gcctttgtgc chr16:85411033-85411113 28 1.70e-05 ACCTCTCctg gctgtgtg accttgggca chr19:18540778-18540858 5 1.70e-05 AAAC gctgtgtg actgtaggca chr2:64855336-64855416 8 1.70e-05 cttgcca gctgtgtg acctttggca chr4:6776835-6776915 18 1.70e-05 ggctgcttcc gctgtgtg actttggcac chr1:21640138-21640218 46 1.70e-05 gtaatttact gctgtgtg accctgggtg chr20:32259778-32259858 44 1.70e-05 tcaattaaag gctgtgtg accttaggca chr1:15598604-15598684 38 1.70e-05 tcacacacta gctgtgtg gccttgggca chr19:41740038-41740118 28 1.70e-05 CTCCATGGGG gctgtgtg actttgggca chr19:3308294-3308374 9 3.37e-05 agaggggg gctgtgag cacccgagtt chr17:56756417-56756497 37 3.37e-05 ggctgaggtt gctgtgag ctgagattgc chr10:73392097-73392177 3 3.37e-05 CC GCTGTGAG ATTCAATCTA chr16:88484659-88484739 1 5.19e-05 . GCTCTGTg gtcagggagg chr19:46172204-46172284 32 7.21e-05 TCTCCACCAG GCTGTGGG AACTCAGATG chr5:176873262-176873342 9 7.21e-05 AGGCCAGG GCTGTGGG TTCGGCACTA chr3:184217185-184217265 27 7.21e-05 TGCTATGCGT GCTGTGGG CACCCTTGAA chr2:97510251-97510331 43 7.21e-05 CCTTCCCTGT GCTGTGGG TTTCTCGCCC chr16:88560338-88560418 32 8.87e-05 GTCCAGCctc gctgagtg acagcaggca chr3:9993465-9993545 49 8.87e-05 aggtcacaca gctgagtg gacacaatcg chr22:29703244-29703324 70 1.06e-04 TGCGGAGGCC GCTCTGAG TCC chr1:8905342-8905422 48 1.06e-04 aggaatcagt gctcTGAG AGagtgagca chr4:144270000-144270080 3 1.06e-04 ca gctctgag atctctctct chr11:67805048-67805128 1 1.06e-04 . gctctgag aaggcctgca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:49075167-49075247 1.7e-05 33_[+3]_39 chr16:85626349-85626429 1.7e-05 7_[+3]_65 chr8:126429808-126429888 1.7e-05 15_[+3]_57 chr20:56171582-56171662 1.7e-05 23_[+3]_49 chr11:64017732-64017812 1.7e-05 9_[+3]_63 chr2:10626936-10627016 1.7e-05 13_[+3]_59 chr19:5312202-5312282 1.7e-05 65_[+3]_7 chr7:45007797-45007877 1.7e-05 55_[+3]_17 chr19:17229900-17229980 1.7e-05 9_[+3]_63 chr12:124910340-12491042 1.7e-05 20_[+3]_52 chr16:85411033-85411113 1.7e-05 27_[+3]_45 chr19:18540778-18540858 1.7e-05 4_[+3]_68 chr2:64855336-64855416 1.7e-05 7_[+3]_65 chr4:6776835-6776915 1.7e-05 17_[+3]_55 chr1:21640138-21640218 1.7e-05 45_[+3]_27 chr20:32259778-32259858 1.7e-05 43_[+3]_29 chr1:15598604-15598684 1.7e-05 37_[+3]_35 chr19:41740038-41740118 1.7e-05 27_[+3]_45 chr19:3308294-3308374 3.4e-05 8_[+3]_64 chr17:56756417-56756497 3.4e-05 36_[+3]_36 chr10:73392097-73392177 3.4e-05 2_[+3]_70 chr16:88484659-88484739 5.2e-05 [+3]_72 chr19:46172204-46172284 7.2e-05 31_[+3]_41 chr5:176873262-176873342 7.2e-05 8_[+3]_64 chr3:184217185-184217265 7.2e-05 26_[+3]_46 chr2:97510251-97510331 7.2e-05 42_[+3]_30 chr16:88560338-88560418 8.9e-05 31_[+3]_41 chr3:9993465-9993545 8.9e-05 48_[+3]_24 chr22:29703244-29703324 0.00011 69_[+3]_3 chr1:8905342-8905422 0.00011 47_[+3]_25 chr4:144270000-144270080 0.00011 2_[+3]_70 chr11:67805048-67805128 0.00011 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGTGTG width=8 seqs=32 chr19:49075167-49075247 ( 34) GCTGTGTG 1 chr16:85626349-85626429 ( 8) GCTGTGTG 1 chr8:126429808-126429888 ( 16) GCTGTGTG 1 chr20:56171582-56171662 ( 24) GCTGTGTG 1 chr11:64017732-64017812 ( 10) GCTGTGTG 1 chr2:10626936-10627016 ( 14) GCTGTGTG 1 chr19:5312202-5312282 ( 66) GCTGTGTG 1 chr7:45007797-45007877 ( 56) GCTGTGTG 1 chr19:17229900-17229980 ( 10) GCTGTGTG 1 chr12:124910340-12491042 ( 21) GCTGTGTG 1 chr16:85411033-85411113 ( 28) GCTGTGTG 1 chr19:18540778-18540858 ( 5) GCTGTGTG 1 chr2:64855336-64855416 ( 8) GCTGTGTG 1 chr4:6776835-6776915 ( 18) GCTGTGTG 1 chr1:21640138-21640218 ( 46) GCTGTGTG 1 chr20:32259778-32259858 ( 44) GCTGTGTG 1 chr1:15598604-15598684 ( 38) GCTGTGTG 1 chr19:41740038-41740118 ( 28) GCTGTGTG 1 chr19:3308294-3308374 ( 9) GCTGTGAG 1 chr17:56756417-56756497 ( 37) GCTGTGAG 1 chr10:73392097-73392177 ( 3) GCTGTGAG 1 chr16:88484659-88484739 ( 1) GCTCTGTG 1 chr19:46172204-46172284 ( 32) GCTGTGGG 1 chr5:176873262-176873342 ( 9) GCTGTGGG 1 chr3:184217185-184217265 ( 27) GCTGTGGG 1 chr2:97510251-97510331 ( 43) GCTGTGGG 1 chr16:88560338-88560418 ( 32) GCTGAGTG 1 chr3:9993465-9993545 ( 49) GCTGAGTG 1 chr22:29703244-29703324 ( 70) GCTCTGAG 1 chr1:8905342-8905422 ( 48) GCTCTGAG 1 chr4:144270000-144270080 ( 3) GCTCTGAG 1 chr11:67805048-67805128 ( 1) GCTCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.89106 E= 2.4e-015 -1164 -1164 190 -1164 -1164 181 -1164 -1164 -1164 -1164 -1164 214 -1164 -87 166 -1164 -182 -1164 -1164 205 -1164 -1164 190 -1164 -1 -1164 -110 154 -1164 -1164 190 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.4e-015 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.156250 0.843750 0.000000 0.062500 0.000000 0.000000 0.937500 0.000000 0.000000 1.000000 0.000000 0.218750 0.000000 0.125000 0.656250 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- GCTGTG[TA]G -------------------------------------------------------------------------------- Time 12.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGAGAGG MEME-4 width = 8 sites = 22 llr = 214 E-value = 3.6e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:8:a1: pos.-specific C a:::1::: probability G ::a19:9a matrix T :::1:::: bits 2.2 * * 2.0 ** * * 1.7 *** * * 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:128586462-128586542 22 1.59e-05 AGCAGCTgca cagagagg ttaagtcact chr2:191399714-191399794 44 1.59e-05 GTGGGAGTTG CAGAGAGG AAGAGTCGCT chr19:16251915-16251995 52 1.59e-05 aactgaggct cagagagg ctgagcaact chr1:27899769-27899849 49 1.59e-05 aaccaaggcc cagagagg ggaagcagcc chr16:85372367-85372447 10 1.59e-05 gctggggcc cagagagg tttaatcact chr1:22228979-22229059 24 1.59e-05 aaaccaggct cagagagg tacagttacc chr3:14533229-14533309 29 1.59e-05 agcagaggtc cagagagg ctgagccacc chr19:3321081-3321161 59 1.59e-05 agttgaggct cagagagg ggcagtactt chr16:30020182-30020262 34 1.59e-05 TCTTGAGCAT CAGAGAGG TACGGGCTTA chr19:1027529-1027609 44 1.59e-05 GGTTCTAGCT CAGAGAGG ACCAGACACT chr3:13290312-13290392 14 1.59e-05 cagagctgca cagagagg ctaagtcacc chr3:9993465-9993545 15 1.59e-05 aacgggggtt cagagagg gtgagcaact chr19:49933654-49933734 29 1.59e-05 TGAGGCAGGA CAGAGAGG AGCAGGGTTC chr20:31156971-31157051 8 3.52e-05 agacaat cagggagg gcctccctga chr1:12249259-12249339 16 3.52e-05 ctgggggagt cagggagg gctgcctgga chr16:88484659-88484739 11 3.52e-05 GCTCTGTggt cagggagg gcttcctgga chr17:37773668-37773748 25 6.47e-05 cttgcagact cagtgagg tgctgcctcc chr20:654031-654111 24 6.47e-05 ggctgaggac cagagaag ggaaggcact chr1:16516751-16516831 55 6.47e-05 ccctgactgc cagtgagg acaggctgct chr10:72290236-72290316 2 6.47e-05 c cagagaag ctaagtgact chr19:10686155-10686235 28 8.16e-05 gcccatttca cagacagg caaactgagc chr10:1055283-1055363 24 8.16e-05 GCTGGCCCCG CAGACAGG GAGATAAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:128586462-128586542 1.6e-05 21_[+4]_51 chr2:191399714-191399794 1.6e-05 43_[+4]_29 chr19:16251915-16251995 1.6e-05 51_[+4]_21 chr1:27899769-27899849 1.6e-05 48_[+4]_24 chr16:85372367-85372447 1.6e-05 9_[+4]_63 chr1:22228979-22229059 1.6e-05 23_[+4]_49 chr3:14533229-14533309 1.6e-05 28_[+4]_44 chr19:3321081-3321161 1.6e-05 58_[+4]_14 chr16:30020182-30020262 1.6e-05 33_[+4]_39 chr19:1027529-1027609 1.6e-05 43_[+4]_29 chr3:13290312-13290392 1.6e-05 13_[+4]_59 chr3:9993465-9993545 1.6e-05 14_[+4]_58 chr19:49933654-49933734 1.6e-05 28_[+4]_44 chr20:31156971-31157051 3.5e-05 7_[+4]_65 chr1:12249259-12249339 3.5e-05 15_[+4]_57 chr16:88484659-88484739 3.5e-05 10_[+4]_62 chr17:37773668-37773748 6.5e-05 24_[+4]_48 chr20:654031-654111 6.5e-05 23_[+4]_49 chr1:16516751-16516831 6.5e-05 54_[+4]_18 chr10:72290236-72290316 6.5e-05 1_[+4]_71 chr19:10686155-10686235 8.2e-05 27_[+4]_45 chr10:1055283-1055363 8.2e-05 23_[+4]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGAGAGG width=8 seqs=22 chr3:128586462-128586542 ( 22) CAGAGAGG 1 chr2:191399714-191399794 ( 44) CAGAGAGG 1 chr19:16251915-16251995 ( 52) CAGAGAGG 1 chr1:27899769-27899849 ( 49) CAGAGAGG 1 chr16:85372367-85372447 ( 10) CAGAGAGG 1 chr1:22228979-22229059 ( 24) CAGAGAGG 1 chr3:14533229-14533309 ( 29) CAGAGAGG 1 chr19:3321081-3321161 ( 59) CAGAGAGG 1 chr16:30020182-30020262 ( 34) CAGAGAGG 1 chr19:1027529-1027609 ( 44) CAGAGAGG 1 chr3:13290312-13290392 ( 14) CAGAGAGG 1 chr3:9993465-9993545 ( 15) CAGAGAGG 1 chr19:49933654-49933734 ( 29) CAGAGAGG 1 chr20:31156971-31157051 ( 8) CAGGGAGG 1 chr1:12249259-12249339 ( 16) CAGGGAGG 1 chr16:88484659-88484739 ( 11) CAGGGAGG 1 chr17:37773668-37773748 ( 25) CAGTGAGG 1 chr20:654031-654111 ( 24) CAGAGAAG 1 chr1:16516751-16516831 ( 55) CAGTGAGG 1 chr10:72290236-72290316 ( 2) CAGAGAAG 1 chr19:10686155-10686235 ( 28) CAGACAGG 1 chr10:1055283-1055363 ( 24) CAGACAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 3.6e-007 -1110 181 -1110 -1110 218 -1110 -1110 -1110 -1110 -1110 190 -1110 181 -1110 -97 -131 -1110 -165 176 -1110 218 -1110 -1110 -1110 -128 -1110 176 -1110 -1110 -1110 190 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.6e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.772727 0.000000 0.136364 0.090909 0.000000 0.090909 0.909091 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGAGG MEME-4 regular expression -------------------------------------------------------------------------------- CAGAGAGG -------------------------------------------------------------------------------- Time 15.95 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGAGCCA MEME-5 width = 8 sites = 20 llr = 200 E-value = 3.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGAGCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::a:::8 pos.-specific C :::::aa: probability G 9aa:a::: matrix T :::::::2 bits 2.2 * 2.0 **** 1.7 ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGCCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:66754675-66754755 20 2.06e-05 AGGAGCACGA GGGAGCCA TTGCAGAGTG chr19:6772227-6772307 42 2.06e-05 ggaggaaagt gggagcca tagagagttg chr11:119194294-11919437 52 2.06e-05 GTGGGCAatg gggagcca ctgcaggttc chr19:1850963-1851043 20 2.06e-05 tgagggcagt gggagcca tggagggttg chr19:4874103-4874183 33 2.06e-05 aagggcactg gggagcca cagtaggttc chr7:101953733-101953813 3 2.06e-05 AT GGGAGCCA TGGCAGGTAA chr19:3268966-3269046 30 2.06e-05 GAGAGCAATA GGGAGCCA CAGCAGCGTT chr19:5354585-5354665 39 2.06e-05 tgagggaggc gggagcca tggagggtca chr19:16186349-16186429 10 2.06e-05 TGGGCCata gggagcca tagcaggttc chr10:73392097-73392177 36 2.06e-05 GCAGGCAATT GGGAGCCA TAGATGGTCC chr19:2303579-2303659 11 2.06e-05 ACAGGCAATG GGGAGCCA TGGGAGGATA chr19:1054446-1054526 29 2.06e-05 GAGGGCACTG GGGAGCCA TGGGTGGTTG chr19:6717148-6717228 31 2.06e-05 ataggaaggt gggagcca tggagggctg chr19:1450989-1451069 12 2.06e-05 gagggcactg gggagcca tggaaggtgt chr2:219264519-219264599 38 4.17e-05 CCTTTTAAGG GGGAGCCT TGAAACGGCG chr12:56893394-56893474 21 4.17e-05 CAGGCTTCAA GGGAGCCT GTGACTCTGA chr2:122290687-122290767 59 4.17e-05 AGAGGAACTG GGGAGCCT GGAAACTCCC chr19:3603703-3603783 23 4.17e-05 CTTGGCCCAG GGGAGCCT GGAAACTGGC chr16:81516850-81516930 32 5.87e-05 aaggaggtaa aggagcca tccacagcat chr19:18304952-18305032 16 5.87e-05 GCCCTGGACT AGGAGCCA GGTCACAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:66754675-66754755 2.1e-05 19_[+5]_53 chr19:6772227-6772307 2.1e-05 41_[+5]_31 chr11:119194294-11919437 2.1e-05 51_[+5]_21 chr19:1850963-1851043 2.1e-05 19_[+5]_53 chr19:4874103-4874183 2.1e-05 32_[+5]_40 chr7:101953733-101953813 2.1e-05 2_[+5]_70 chr19:3268966-3269046 2.1e-05 29_[+5]_43 chr19:5354585-5354665 2.1e-05 38_[+5]_34 chr19:16186349-16186429 2.1e-05 9_[+5]_63 chr10:73392097-73392177 2.1e-05 35_[+5]_37 chr19:2303579-2303659 2.1e-05 10_[+5]_62 chr19:1054446-1054526 2.1e-05 28_[+5]_44 chr19:6717148-6717228 2.1e-05 30_[+5]_42 chr19:1450989-1451069 2.1e-05 11_[+5]_61 chr2:219264519-219264599 4.2e-05 37_[+5]_35 chr12:56893394-56893474 4.2e-05 20_[+5]_52 chr2:122290687-122290767 4.2e-05 58_[+5]_14 chr19:3603703-3603783 4.2e-05 22_[+5]_50 chr16:81516850-81516930 5.9e-05 31_[+5]_41 chr19:18304952-18305032 5.9e-05 15_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGAGCCA width=8 seqs=20 chr11:66754675-66754755 ( 20) GGGAGCCA 1 chr19:6772227-6772307 ( 42) GGGAGCCA 1 chr11:119194294-11919437 ( 52) GGGAGCCA 1 chr19:1850963-1851043 ( 20) GGGAGCCA 1 chr19:4874103-4874183 ( 33) GGGAGCCA 1 chr7:101953733-101953813 ( 3) GGGAGCCA 1 chr19:3268966-3269046 ( 30) GGGAGCCA 1 chr19:5354585-5354665 ( 39) GGGAGCCA 1 chr19:16186349-16186429 ( 10) GGGAGCCA 1 chr10:73392097-73392177 ( 36) GGGAGCCA 1 chr19:2303579-2303659 ( 11) GGGAGCCA 1 chr19:1054446-1054526 ( 29) GGGAGCCA 1 chr19:6717148-6717228 ( 31) GGGAGCCA 1 chr19:1450989-1451069 ( 12) GGGAGCCA 1 chr2:219264519-219264599 ( 38) GGGAGCCT 1 chr12:56893394-56893474 ( 21) GGGAGCCT 1 chr2:122290687-122290767 ( 59) GGGAGCCT 1 chr19:3603703-3603783 ( 23) GGGAGCCT 1 chr16:81516850-81516930 ( 32) AGGAGCCA 1 chr19:18304952-18305032 ( 16) AGGAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.36464 E= 3.9e-007 -114 -1097 175 -1097 -1097 -1097 190 -1097 -1097 -1097 190 -1097 218 -1097 -1097 -1097 -1097 -1097 190 -1097 -1097 181 -1097 -1097 -1097 181 -1097 -1097 186 -1097 -1097 -18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.9e-007 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGCCA MEME-5 regular expression -------------------------------------------------------------------------------- GGGAGCC[AT] -------------------------------------------------------------------------------- Time 19.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:19038603-19038683 2.78e-01 80 chr6:2861664-2861744 4.00e-01 80 chr19:3603703-3603783 1.61e-03 22_[+5(4.17e-05)]_50 chr11:64664136-64664216 8.65e-02 80 chr19:956909-956989 9.60e-03 41_[+1(1.16e-05)]_31 chr21:45244482-45244562 3.48e-02 47_[+1(2.34e-05)]_25 chr19:54866558-54866638 1.55e-02 80 chr19:3013614-3013694 1.59e-02 25_[+1(1.16e-05)]_47 chr6:137656180-137656260 2.45e-02 80 chr19:2273133-2273213 7.56e-01 80 chr8:130838524-130838604 3.12e-02 80 chr17:46869918-46869998 3.27e-01 80 chr19:4088228-4088308 4.84e-03 66_[+1(2.34e-05)]_6 chr1:205778769-205778849 5.07e-01 80 chr19:1450989-1451069 5.65e-03 11_[+5(2.06e-05)]_61 chr17:80259607-80259687 1.11e-01 49_[+1(9.10e-05)]_23 chr19:46544593-46544673 1.11e-02 44_[+1(1.16e-05)]_28 chr16:85854721-85854801 2.26e-02 25_[+1(1.16e-05)]_23_[+1(1.16e-05)]_\ 16 chr19:4208047-4208127 1.61e-02 62_[+1(1.16e-05)]_10 chr6:32052728-32052808 1.72e-04 41_[+1(1.16e-05)]_[+2(2.62e-05)]_23 chr1:2039342-2039422 6.03e-02 80 chr2:97510251-97510331 1.27e-04 14_[+1(1.16e-05)]_11_[+2(8.78e-05)]_\ 1_[+3(7.21e-05)]_30 chr1:3437395-3437475 9.64e-03 11_[+1(1.16e-05)]_61 chr1:32400862-32400942 2.89e-02 38_[+1(1.16e-05)]_34 chr10:1055283-1055363 6.61e-02 23_[+4(8.16e-05)]_49 chr15:79320834-79320914 4.81e-01 80 chr13:96330394-96330474 5.71e-01 80 chr6:144294904-144294984 1.00e-01 27_[+1(2.34e-05)]_35_[+1(2.34e-05)]_\ 2 chr17:78009878-78009958 1.51e-01 80 chr12:12879458-12879538 9.89e-01 80 chr19:3733628-3733708 2.14e-02 34_[+1(1.16e-05)]_38 chr6:26464806-26464886 8.43e-03 40_[+1(3.84e-05)]_32 chr2:27760446-27760526 6.04e-02 80 chr19:6717148-6717228 3.51e-03 30_[+5(2.06e-05)]_42 chr19:1054446-1054526 2.92e-03 28_[+5(2.06e-05)]_44 chr19:2303579-2303659 1.41e-02 10_[+5(2.06e-05)]_62 chr19:1651440-1651520 9.20e-01 80 chr7:44753416-44753496 5.20e-01 80 chr19:18552444-18552524 2.24e-01 80 chr3:167695992-167696072 1.69e-02 54_[+1(2.34e-05)]_18 chr2:122290687-122290767 5.53e-03 58_[+5(4.17e-05)]_14 chr1:159906373-159906453 1.86e-02 80 chr19:49933654-49933734 1.73e-02 28_[+4(1.59e-05)]_44 chr16:30789968-30790048 4.29e-04 16_[+1(6.68e-05)]_47_[+2(6.71e-05)]_\ 1 chr19:17515565-17515645 1.39e-02 63_[+1(1.16e-05)]_9 chr10:73392097-73392177 1.08e-03 2_[+3(3.37e-05)]_25_[+5(2.06e-05)]_\ 37 chr19:18304952-18305032 1.01e-01 15_[+5(5.87e-05)]_57 chr17:56756417-56756497 7.67e-02 36_[+3(3.37e-05)]_36 chr19:44281362-44281442 5.75e-01 80 chr19:18229637-18229717 2.69e-02 14_[+2(4.69e-05)]_58 chr9:117617530-117617610 8.20e-03 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chr8:126429808-126429888 2.32e-03 15_[+3(1.70e-05)]_20_[+2(4.69e-05)]_\ 29 chr17:76348302-76348382 8.22e-02 80 chr19:48234344-48234424 1.06e-02 80 chr1:8905342-8905422 1.02e-01 80 chr19:6772227-6772307 5.60e-03 41_[+5(2.06e-05)]_31 chr19:771437-771517 7.56e-02 27_[+2(6.71e-05)]_45 chr16:85626349-85626429 1.23e-03 7_[+3(1.70e-05)]_20_[+2(4.69e-05)]_\ 37 chr19:49075167-49075247 2.58e-03 33_[+3(1.70e-05)]_20_[+2(4.69e-05)]_\ 11 chr1:201911463-201911543 6.49e-02 80 chr8:142420751-142420831 8.93e-02 80 chr2:191399714-191399794 2.53e-02 43_[+4(1.59e-05)]_29 chr5:173289080-173289160 7.93e-01 80 chr20:44587414-44587494 6.32e-02 80 chr12:114258855-11425893 4.79e-01 80 chr11:73025508-73025588 4.60e-02 80 chr17:25912311-25912391 8.63e-02 80 chr16:88560338-88560418 1.01e-03 31_[+3(8.87e-05)]_41 chr1:15152095-15152175 7.53e-01 80 chr11:66754675-66754755 2.11e-02 19_[+5(2.06e-05)]_53 chr1:181070215-181070295 1.59e-01 80 chr19:17402818-17402898 1.57e-01 80 chr16:88532761-88532841 4.58e-02 80 chr19:17033235-17033315 8.17e-01 80 chr3:128586462-128586542 6.51e-03 21_[+4(1.59e-05)]_51 chr7:512391-512471 7.41e-01 80 chr17:42634636-42634716 4.10e-01 80 chr19:10728249-10728329 1.02e-01 65_[+2(6.71e-05)]_7 chr1:20729211-20729291 3.09e-01 80 chr22:29703244-29703324 2.67e-03 23_[+2(4.69e-05)]_49 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************