******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PRDM10.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:70362476-70362556 1.0000 80 chr18:46340790-46340870 1.0000 80 chr1:204283527-204283607 1.0000 80 chr2:231730784-231730864 1.0000 80 chr1:32698335-32698415 1.0000 80 chr20:49996649-49996729 1.0000 80 chr6:11688076-11688156 1.0000 80 chr7:116851178-116851258 1.0000 80 chr3:170458868-170458948 1.0000 80 chr7:136088501-136088581 1.0000 80 chr19:15607453-15607533 1.0000 80 chr6:35231453-35231533 1.0000 80 chrX:67790646-67790726 1.0000 80 chr10:69715545-69715625 1.0000 80 chr1:32913572-32913652 1.0000 80 chr6:68749657-68749737 1.0000 80 chr7:134153380-134153460 1.0000 80 chr19:51882641-51882721 1.0000 80 chr1:24235448-24235528 1.0000 80 chr16:11904089-11904169 1.0000 80 chr1:113136998-113137078 1.0000 80 chr19:18108732-18108812 1.0000 80 chr22:38426973-38427053 1.0000 80 chr1:161130833-161130913 1.0000 80 chr2:159830185-159830265 1.0000 80 chr6:88183425-88183505 1.0000 80 chr5:78801121-78801201 1.0000 80 chr15:70201331-70201411 1.0000 80 chr19:3355104-3355184 1.0000 80 chr20:52822244-52822324 1.0000 80 chr20:61267942-61268022 1.0000 80 chr6:153296672-153296752 1.0000 80 chr5:32460977-32461057 1.0000 80 chr10:116363784-11636386 1.0000 80 chrX:48490782-48490862 1.0000 80 chr17:39891001-39891081 1.0000 80 chr17:62462298-62462378 1.0000 80 chr6:68010443-68010523 1.0000 80 chr6:148663791-148663871 1.0000 80 chr13:47685002-47685082 1.0000 80 chr11:6591096-6591176 1.0000 80 chr2:120939748-120939828 1.0000 80 chr6:80341423-80341503 1.0000 80 chr1:236447803-236447883 1.0000 80 chr13:110064952-11006503 1.0000 80 chr8:126774280-126774360 1.0000 80 chr18:12703928-12704008 1.0000 80 chr2:43159062-43159142 1.0000 80 chr18:77802905-77802985 1.0000 80 chr11:61737635-61737715 1.0000 80 chrX:10157632-10157712 1.0000 80 chr15:90356882-90356962 1.0000 80 chr2:192714156-192714236 1.0000 80 chr7:158652682-158652762 1.0000 80 chr19:42721260-42721340 1.0000 80 chr1:212677681-212677761 1.0000 80 chr6:158111996-158112076 1.0000 80 chr12:124117541-12411762 1.0000 80 chr8:30781265-30781345 1.0000 80 chr11:341647-341727 1.0000 80 chr11:117982160-11798224 1.0000 80 chr2:205324058-205324138 1.0000 80 chr8:145155492-145155572 1.0000 80 chr7:151714207-151714287 1.0000 80 chr6:116478249-116478329 1.0000 80 chr5:175596587-175596667 1.0000 80 chr5:36854733-36854813 1.0000 80 chr10:13432885-13432965 1.0000 80 chr1:118161227-118161307 1.0000 80 chr6:15586319-15586399 1.0000 80 chr8:1711289-1711369 1.0000 80 chr2:60935904-60935984 1.0000 80 chr15:68163483-68163563 1.0000 80 chr3:185828129-185828209 1.0000 80 chrX:48768434-48768514 1.0000 80 chr4:15679212-15679292 1.0000 80 chr17:63081675-63081755 1.0000 80 chr7:56189292-56189372 1.0000 80 chrX:154444156-154444236 1.0000 80 chr20:18417118-18417198 1.0000 80 chr11:62231165-62231245 1.0000 80 chr16:9164327-9164407 1.0000 80 chr19:44267998-44268078 1.0000 80 chr4:103179152-103179232 1.0000 80 chr6:57113261-57113341 1.0000 80 chr16:22103682-22103762 1.0000 80 chr6:5513728-5513808 1.0000 80 chr1:197853509-197853589 1.0000 80 chr8:27365239-27365319 1.0000 80 chr3:129813201-129813281 1.0000 80 chr12:109592583-10959266 1.0000 80 chr12:63211556-63211636 1.0000 80 chr10:112459810-11245989 1.0000 80 chr22:45594292-45594372 1.0000 80 chr9:139219186-139219266 1.0000 80 chr17:58428553-58428633 1.0000 80 chr5:55834552-55834632 1.0000 80 chr17:30466245-30466325 1.0000 80 chr2:159216407-159216487 1.0000 80 chr6:33872301-33872381 1.0000 80 chr5:41864164-41864244 1.0000 80 chr11:57416689-57416769 1.0000 80 chr11:3426062-3426142 1.0000 80 chr17:62918669-62918749 1.0000 80 chr19:49877146-49877226 1.0000 80 chr11:48030552-48030632 1.0000 80 chr6:83073346-83073426 1.0000 80 chr14:69247979-69248059 1.0000 80 chr7:101361543-101361623 1.0000 80 chr21:22483975-22484055 1.0000 80 chr22:17886432-17886512 1.0000 80 chr11:126225965-12622604 1.0000 80 chr1:212207616-212207696 1.0000 80 chr5:133238418-133238498 1.0000 80 chr8:41667812-41667892 1.0000 80 chr11:1393206-1393286 1.0000 80 chr10:95196988-95197068 1.0000 80 chr7:2339198-2339278 1.0000 80 chr8:72995938-72996018 1.0000 80 chr8:56922747-56922827 1.0000 80 chr6:139683210-139683290 1.0000 80 chr14:21944647-21944727 1.0000 80 chr9:33391517-33391597 1.0000 80 chr5:40836347-40836427 1.0000 80 chr2:203951242-203951322 1.0000 80 chr3:45422485-45422565 1.0000 80 chr1:31364829-31364909 1.0000 80 chr11:64116117-64116197 1.0000 80 chr5:139492713-139492793 1.0000 80 chr1:14924999-14925079 1.0000 80 chr16:31226840-31226920 1.0000 80 chr17:7743415-7743495 1.0000 80 chr4:7068314-7068394 1.0000 80 chr22:45675800-45675880 1.0000 80 chr2:43395755-43395835 1.0000 80 chr20:8978533-8978613 1.0000 80 chr2:66794177-66794257 1.0000 80 chr11:70314753-70314833 1.0000 80 chr19:53520299-53520379 1.0000 80 chr20:48669260-48669340 1.0000 80 chr2:26562375-26562455 1.0000 80 chr19:44139370-44139450 1.0000 80 chr5:65220659-65220739 1.0000 80 chr5:180472184-180472264 1.0000 80 chr1:147013227-147013307 1.0000 80 chr17:7343885-7343965 1.0000 80 chr18:46472928-46473008 1.0000 80 chr21:40723507-40723587 1.0000 80 chr3:125776092-125776172 1.0000 80 chr3:72201909-72201989 1.0000 80 chr7:44152368-44152448 1.0000 80 chr10:99093408-99093488 1.0000 80 chr9:135285405-135285485 1.0000 80 chr12:56615199-56615279 1.0000 80 chr9:33375433-33375513 1.0000 80 chr15:35279036-35279116 1.0000 80 chr1:200860484-200860564 1.0000 80 chr2:171774241-171774321 1.0000 80 chr18:9742897-9742977 1.0000 80 chr15:71544693-71544773 1.0000 80 chr14:52118256-52118336 1.0000 80 chr4:80247353-80247433 1.0000 80 chr3:182434385-182434465 1.0000 80 chr2:178939016-178939096 1.0000 80 chr10:21325847-21325927 1.0000 80 chr15:75244675-75244755 1.0000 80 chr8:80523167-80523247 1.0000 80 chr11:66034865-66034945 1.0000 80 chr19:6769357-6769437 1.0000 80 chr5:167997832-167997912 1.0000 80 chr1:6487718-6487798 1.0000 80 chr10:50012015-50012095 1.0000 80 chr9:140195251-140195331 1.0000 80 chr5:38807264-38807344 1.0000 80 chr16:57799190-57799270 1.0000 80 chr1:20878727-20878807 1.0000 80 chr8:106587445-106587525 1.0000 80 chr22:36725459-36725539 1.0000 80 chr19:12991502-12991582 1.0000 80 chr11:62475023-62475103 1.0000 80 chr19:56103073-56103153 1.0000 80 chr10:112201540-11220162 1.0000 80 chr18:11987805-11987885 1.0000 80 chr10:134136253-13413633 1.0000 80 chr15:66163059-66163139 1.0000 80 chr2:234135419-234135499 1.0000 80 chr1:204942723-204942803 1.0000 80 chr8:17013347-17013427 1.0000 80 chr12:51580444-51580524 1.0000 80 chr20:48460432-48460512 1.0000 80 chr10:100900823-10090090 1.0000 80 chr15:57511511-57511591 1.0000 80 chr2:205778913-205778993 1.0000 80 chrX:47880817-47880897 1.0000 80 chrX:152419856-152419936 1.0000 80 chr6:158226000-158226080 1.0000 80 chr8:74771079-74771159 1.0000 80 chr13:115078861-11507894 1.0000 80 chr1:115327366-115327446 1.0000 80 chr1:228665156-228665236 1.0000 80 chr5:163785638-163785718 1.0000 80 chr3:25469856-25469936 1.0000 80 chr3:37684675-37684755 1.0000 80 chr12:108054174-10805425 1.0000 80 chr10:17257130-17257210 1.0000 80 chr20:42355737-42355817 1.0000 80 chr1:150244881-150244961 1.0000 80 chr9:37466846-37466926 1.0000 80 chr9:127275920-127276000 1.0000 80 chr2:202060822-202060902 1.0000 80 chr11:65308823-65308903 1.0000 80 chr9:127331409-127331489 1.0000 80 chr2:27805287-27805367 1.0000 80 chrX:48858044-48858124 1.0000 80 chr2:87303604-87303684 1.0000 80 chr2:217277385-217277465 1.0000 80 chr14:63568920-63569000 1.0000 80 chr19:12662770-12662850 1.0000 80 chr6:26352778-26352858 1.0000 80 chr22:46984417-46984497 1.0000 80 chr6:14570290-14570370 1.0000 80 chrX:48754492-48754572 1.0000 80 chr16:84911868-84911948 1.0000 80 chr19:55455530-55455610 1.0000 80 chr17:30441722-30441802 1.0000 80 chrX:41493612-41493692 1.0000 80 chr19:8260542-8260622 1.0000 80 chr7:99104175-99104255 1.0000 80 chr7:75474622-75474702 1.0000 80 chr2:160212723-160212803 1.0000 80 chr4:68578764-68578844 1.0000 80 chr12:56224443-56224523 1.0000 80 chr2:101212490-101212570 1.0000 80 chr2:218715022-218715102 1.0000 80 chr9:37104469-37104549 1.0000 80 chr3:51533428-51533508 1.0000 80 chr3:69299365-69299445 1.0000 80 chr12:54763018-54763098 1.0000 80 chr7:104909614-104909694 1.0000 80 chr3:120341727-120341807 1.0000 80 chr7:26137940-26138020 1.0000 80 chr20:49342141-49342221 1.0000 80 chr10:94003202-94003282 1.0000 80 chr17:7966331-7966411 1.0000 80 chr22:41583360-41583440 1.0000 80 chr4:153273964-153274044 1.0000 80 chr17:47077454-47077534 1.0000 80 chr7:102787069-102787149 1.0000 80 chr5:141705517-141705597 1.0000 80 chr3:58595973-58596053 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PRDM10/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PRDM10.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.257 C 0.24 G 0.247 T 0.256 Background letter frequencies (from file dataset with add-one prior applied): A 0.257 C 0.24 G 0.247 T 0.256 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CYBTYCYC MEME-1 width = 8 sites = 82 llr = 568 E-value = 5.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYBTYCYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a333775a probability G ::3::::: matrix T :757335: bits 2.1 * * 1.9 * * 1.6 * * 1.4 * * Relative 1.2 * * Entropy 1.0 ** ***** (10.0 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTCCCC consensus CGCTTT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYBTYCYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:141705517-141705597 63 1.34e-05 TTGTAGGCGC CTTTCCCC AATATCCCCC chr14:63568920-63569000 42 1.34e-05 AATTTCAGTC CTTTCCCC TTCTTTTGCA chrX:48858044-48858124 66 1.34e-05 CATCTGGGGT CTTTCCCC AATCCCC chr11:65308823-65308903 18 1.34e-05 CACCACAGGT CTTTCCCC CCACATTCCC chr5:41864164-41864244 56 1.34e-05 AAACTTTTCC CTTTCCCC TACTTCATCC chrX:48490782-48490862 7 1.34e-05 ATAGCC CTTTCCCC TACTACTAAA chr2:26562375-26562455 59 2.76e-05 atattttttt ctttcctc ttgggtttta chr11:64116117-64116197 41 4.05e-05 TCATGGGCAG CTGTCCCC GAAGCTTCAT chr15:90356882-90356962 24 4.05e-05 GGGACAGAGG CTGTCCCC ACTTCCTCCT chr19:44139370-44139450 47 6.55e-05 CATCCTGCCT CCTTCCCC CTTCCTCCCT chr9:33391517-33391597 17 6.55e-05 GCCCATCCAA CTCTCCCC CACAGCCAGG chr10:13432885-13432965 38 6.55e-05 agaaggcgtc ctctcccc agtttgaaaa chr19:18108732-18108812 13 6.55e-05 aaAGACCAGT CTCTCCCC TCATCCACTC chr16:57799190-57799270 24 7.93e-05 CCACCCTCTT CTGTCCTC CAGAGGAAGG chr5:139492713-139492793 55 7.93e-05 GGTGCGTCTA CTGTCCTC TGCTCGGCTC chr5:32460977-32461057 16 7.93e-05 tggcttggta ctgtcctc acaatggtga chr9:37104469-37104549 58 1.35e-04 cagacccaaa ccttcctc tatagcttcc chr2:27805287-27805367 40 1.35e-04 AATCAAACAA CTCTCCTC GGGACCACAC chr10:134136253-13413633 40 1.35e-04 CCACTCTGTA CTTTCTCC AGTGTCCTGG chr18:11987805-11987885 52 1.35e-04 tgagggttcc cttttccc cacgtcttcc chr12:56615199-56615279 4 1.35e-04 CTC CCTTCCTC CCCTTCTGGC chr4:7068314-7068394 40 1.35e-04 GTGAAGCCCA CCTTCCTC TCCAGTTGTT chr19:49877146-49877226 59 1.35e-04 catattcaaa ctttctcc ctcaactcaa chr5:55834552-55834632 33 1.35e-04 TGTGTTGAGC CCTTCCTC TATAGGAGGA chr11:341647-341727 58 1.35e-04 agacgtgccc ccttcctc ttcaccttct chrX:10157632-10157712 61 1.35e-04 CTCACTTCCC CCTTCCTC GCTGGACTAA chr20:48460432-48460512 65 1.90e-04 cccgcccccc ctttcttc ctctcttg chr3:125776092-125776172 64 1.90e-04 AGTGGCCTCG CTTTCTTC AGCTACAAA chr10:95196988-95197068 42 1.90e-04 TTTTTTTCTT CTTTCTTC TTCTTCTTAA chr6:153296672-153296752 69 1.90e-04 AAGGGTAGAA CTTTCTTC TTTA chr6:35231453-35231533 25 1.90e-04 tatttgtgta cttttctc aaccccactc chr22:36725459-36725539 66 2.15e-04 CAGCCCCCTG CCCTCCCC CACTGCG chr5:38807264-38807344 48 2.15e-04 TCCTATCATC CTTCCCTC CTCTCCATCT chr19:42721260-42721340 70 2.15e-04 CTCGGCCTCC CCCTCCCC CGG chr19:55455530-55455610 50 2.55e-04 aggaaggtat ctgtctcc tgctcgtccc chr1:6487718-6487798 46 2.55e-04 GTGGAGGTCT CTGTTCCC ACGTGACACC chr10:21325847-21325927 73 2.55e-04 TCCACCGTAG CTGTTCCC chr5:133238418-133238498 43 2.55e-04 CATCTTATCA CTGTCTCC CACCCGCCAT chr12:63211556-63211636 71 2.55e-04 CAGTGCTGCC CCGTCCTC TG chr19:51882641-51882721 67 2.55e-04 TGATTCATCT CTGTTCCC CTCCGT chr3:120341727-120341807 13 3.33e-04 gaatacttca ctgccccc tgtggctttc chrX:48754492-48754572 20 3.33e-04 GCGTCGCACC CCTTCTCC GACGGTGAGC chr11:61737635-61737715 73 3.33e-04 caaaatagtc ctgccccc chr1:236447803-236447883 12 3.33e-04 GAACAGGCAG CCCTCCTC TTTGTTCTCT chr3:37684675-37684755 7 4.71e-04 AGGCTC CTGCCCTC CAATGTTGTT chr15:75244675-75244755 35 4.71e-04 AAACATGTTC CTCTCTTC TCTACCCCCC chr5:40836347-40836427 41 4.71e-04 tgttttcttt cctttctc agcttctaga chr6:83073346-83073426 46 4.71e-04 CTCCCCTAGT CTCTCTTC TTAAATCCCC chr11:3426062-3426142 7 4.71e-04 TATCTG CTCTTCTC TGTGAAGGCA chr3:129813201-129813281 30 4.71e-04 GCAGTGTCTG CTCTTCTC TGTGAAGGCA chrX:48768434-48768514 54 4.71e-04 ATAGTCTCCC CCTTCTTC AGTGAGGAAC chr12:124117541-12411762 28 4.71e-04 AAAAGTCATT CTCTCTTC AGCCTCTTTG chr2:120939748-120939828 44 4.71e-04 CTCTGTGGAT CTTTTTCC TATCTCCTGT chr4:153273964-153274044 24 5.23e-04 TGAACAGATT CCTCCCTC AGCAGCAGAG chr15:57511511-57511591 36 5.23e-04 CAGCATAAAC CCTCCCTC TGTGCTCTGT chr10:112201540-11220162 64 5.23e-04 AGGTGGAGCA CTTCTCCC AGGGCCTGG chr11:66034865-66034945 4 5.23e-04 GGC CTCCCCTC GTCCCTCTTC chr14:52118256-52118336 6 5.65e-04 CACCT CCGTCTCC ACAGCAGGGG chr21:22483975-22484055 53 5.65e-04 tcttttattt cttttttc ttcccaacaa chr6:14570290-14570370 46 6.30e-04 CAGATTGGTG CTTCTCTC TGCACAGCAA chr1:14924999-14925079 42 6.30e-04 TCCGCCGCCT CCGCCCCC CCGGGGGGTG chr11:126225965-12622604 41 6.30e-04 CGGAAAGTTT CCGCCCCC AATCCCCCAG chr1:161130833-161130913 61 6.30e-04 AGACGTAGCA CTTCTCTC CGCCGCCTAG chr1:32913572-32913652 47 6.30e-04 gaatacttca ccgccccc cacggctttc chr19:8260542-8260622 46 6.83e-04 CTGTTTTGCT CCGTTCTC TCCACTCACC chr22:45675800-45675880 60 6.83e-04 CCTTTTTCTC CTGTTTCC CCTCCACTGA chr16:9164327-9164407 60 6.83e-04 ATCACCCAGC CTGTTTCC TTGTCACCCC chr1:200860484-200860564 18 7.76e-04 CCTCGAGCGG CTGCTCCC GCAGCTCGCT chr6:158111996-158112076 8 7.76e-04 CCCCACA CCCTTCTC GACTTCTGCC chr1:31364829-31364909 53 8.53e-04 AACCCAACAT CCTCCTCC AGCCTCCTGC chr22:17886432-17886512 1 8.53e-04 . CTCCCTCC AAAAAAAAga chrX:67790646-67790726 70 8.53e-04 tcctttgtgc ctgttttc ccc chr9:127275920-127276000 22 9.79e-04 AGCCTGAGAG CCTCCTTC CTGTTTGTAG chrX:47880817-47880897 54 9.79e-04 GGAGCTGGTA CTCCTCTC AAGAAAATAA chr8:17013347-17013427 53 9.79e-04 GCCAAAAATG CTTCTTCC TCGCTCTCCA chr16:22103682-22103762 68 9.79e-04 CAGCTGGTGA CTTCTTCC CTGGG chr1:24235448-24235528 38 9.79e-04 GATCAGAGAC CTCCTCTC TGGGCAGTGG chr6:68010443-68010523 73 1.05e-03 gtttcagcac ccctttcc chr12:54763018-54763098 33 1.08e-03 GTAGGCCAGA CCCCTCCC GGGTCGGCGG chr6:33872301-33872381 56 1.08e-03 CCCCCAGCCA CCCCTCCC GGGGCTTGGC chr5:180472184-180472264 17 1.14e-03 AGCACAGAAG CTGCTTCC TCTGGGATCC chr19:15607453-15607533 2 1.14e-03 T CCCTTTTC ATTTTGGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYBTYCYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:141705517-141705597 1.3e-05 62_[+1]_10 chr14:63568920-63569000 1.3e-05 41_[+1]_31 chrX:48858044-48858124 1.3e-05 65_[+1]_7 chr11:65308823-65308903 1.3e-05 17_[+1]_55 chr5:41864164-41864244 1.3e-05 55_[+1]_17 chrX:48490782-48490862 1.3e-05 6_[+1]_66 chr2:26562375-26562455 2.8e-05 58_[+1]_14 chr11:64116117-64116197 4e-05 40_[+1]_32 chr15:90356882-90356962 4e-05 23_[+1]_49 chr19:44139370-44139450 6.6e-05 46_[+1]_26 chr9:33391517-33391597 6.6e-05 16_[+1]_56 chr10:13432885-13432965 6.6e-05 37_[+1]_35 chr19:18108732-18108812 6.6e-05 12_[+1]_60 chr16:57799190-57799270 7.9e-05 23_[+1]_49 chr5:139492713-139492793 7.9e-05 54_[+1]_18 chr5:32460977-32461057 7.9e-05 15_[+1]_57 chr9:37104469-37104549 0.00013 57_[+1]_15 chr2:27805287-27805367 0.00013 39_[+1]_33 chr10:134136253-13413633 0.00013 39_[+1]_33 chr18:11987805-11987885 0.00013 51_[+1]_21 chr12:56615199-56615279 0.00013 3_[+1]_69 chr4:7068314-7068394 0.00013 39_[+1]_33 chr19:49877146-49877226 0.00013 58_[+1]_14 chr5:55834552-55834632 0.00013 32_[+1]_40 chr11:341647-341727 0.00013 57_[+1]_15 chrX:10157632-10157712 0.00013 60_[+1]_12 chr20:48460432-48460512 0.00019 64_[+1]_8 chr3:125776092-125776172 0.00019 63_[+1]_9 chr10:95196988-95197068 0.00019 41_[+1]_31 chr6:153296672-153296752 0.00019 68_[+1]_4 chr6:35231453-35231533 0.00019 24_[+1]_48 chr22:36725459-36725539 0.00021 65_[+1]_7 chr5:38807264-38807344 0.00021 47_[+1]_25 chr19:42721260-42721340 0.00021 69_[+1]_3 chr19:55455530-55455610 0.00026 49_[+1]_23 chr1:6487718-6487798 0.00026 45_[+1]_27 chr10:21325847-21325927 0.00026 72_[+1] chr5:133238418-133238498 0.00026 42_[+1]_30 chr12:63211556-63211636 0.00026 70_[+1]_2 chr19:51882641-51882721 0.00026 66_[+1]_6 chr3:120341727-120341807 0.00033 12_[+1]_60 chrX:48754492-48754572 0.00033 19_[+1]_53 chr11:61737635-61737715 0.00033 72_[+1] chr1:236447803-236447883 0.00033 11_[+1]_61 chr3:37684675-37684755 0.00047 6_[+1]_66 chr15:75244675-75244755 0.00047 34_[+1]_38 chr5:40836347-40836427 0.00047 40_[+1]_32 chr6:83073346-83073426 0.00047 45_[+1]_27 chr11:3426062-3426142 0.00047 6_[+1]_66 chr3:129813201-129813281 0.00047 29_[+1]_43 chrX:48768434-48768514 0.00047 53_[+1]_19 chr12:124117541-12411762 0.00047 27_[+1]_45 chr2:120939748-120939828 0.00047 43_[+1]_29 chr4:153273964-153274044 0.00052 23_[+1]_49 chr15:57511511-57511591 0.00052 35_[+1]_37 chr10:112201540-11220162 0.00052 63_[+1]_9 chr11:66034865-66034945 0.00052 3_[+1]_69 chr14:52118256-52118336 0.00056 5_[+1]_67 chr21:22483975-22484055 0.00056 52_[+1]_20 chr6:14570290-14570370 0.00063 45_[+1]_27 chr1:14924999-14925079 0.00063 41_[+1]_31 chr11:126225965-12622604 0.00063 40_[+1]_32 chr1:161130833-161130913 0.00063 60_[+1]_12 chr1:32913572-32913652 0.00063 46_[+1]_26 chr19:8260542-8260622 0.00068 45_[+1]_27 chr22:45675800-45675880 0.00068 59_[+1]_13 chr16:9164327-9164407 0.00068 59_[+1]_13 chr1:200860484-200860564 0.00078 17_[+1]_55 chr6:158111996-158112076 0.00078 7_[+1]_65 chr1:31364829-31364909 0.00085 52_[+1]_20 chr22:17886432-17886512 0.00085 [+1]_72 chrX:67790646-67790726 0.00085 69_[+1]_3 chr9:127275920-127276000 0.00098 21_[+1]_51 chrX:47880817-47880897 0.00098 53_[+1]_19 chr8:17013347-17013427 0.00098 52_[+1]_20 chr16:22103682-22103762 0.00098 67_[+1]_5 chr1:24235448-24235528 0.00098 37_[+1]_35 chr6:68010443-68010523 0.001 72_[+1] chr12:54763018-54763098 0.0011 32_[+1]_40 chr6:33872301-33872381 0.0011 55_[+1]_17 chr5:180472184-180472264 0.0011 16_[+1]_56 chr19:15607453-15607533 0.0011 1_[+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYBTYCYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYBTYCYC width=8 seqs=82 chr5:141705517-141705597 ( 63) CTTTCCCC 1 chr14:63568920-63569000 ( 42) CTTTCCCC 1 chrX:48858044-48858124 ( 66) CTTTCCCC 1 chr11:65308823-65308903 ( 18) CTTTCCCC 1 chr5:41864164-41864244 ( 56) CTTTCCCC 1 chrX:48490782-48490862 ( 7) CTTTCCCC 1 chr2:26562375-26562455 ( 59) CTTTCCTC 1 chr11:64116117-64116197 ( 41) CTGTCCCC 1 chr15:90356882-90356962 ( 24) CTGTCCCC 1 chr19:44139370-44139450 ( 47) CCTTCCCC 1 chr9:33391517-33391597 ( 17) CTCTCCCC 1 chr10:13432885-13432965 ( 38) CTCTCCCC 1 chr19:18108732-18108812 ( 13) CTCTCCCC 1 chr16:57799190-57799270 ( 24) CTGTCCTC 1 chr5:139492713-139492793 ( 55) CTGTCCTC 1 chr5:32460977-32461057 ( 16) CTGTCCTC 1 chr9:37104469-37104549 ( 58) CCTTCCTC 1 chr2:27805287-27805367 ( 40) CTCTCCTC 1 chr10:134136253-13413633 ( 40) CTTTCTCC 1 chr18:11987805-11987885 ( 52) CTTTTCCC 1 chr12:56615199-56615279 ( 4) CCTTCCTC 1 chr4:7068314-7068394 ( 40) CCTTCCTC 1 chr19:49877146-49877226 ( 59) CTTTCTCC 1 chr5:55834552-55834632 ( 33) CCTTCCTC 1 chr11:341647-341727 ( 58) CCTTCCTC 1 chrX:10157632-10157712 ( 61) CCTTCCTC 1 chr20:48460432-48460512 ( 65) CTTTCTTC 1 chr3:125776092-125776172 ( 64) CTTTCTTC 1 chr10:95196988-95197068 ( 42) CTTTCTTC 1 chr6:153296672-153296752 ( 69) CTTTCTTC 1 chr6:35231453-35231533 ( 25) CTTTTCTC 1 chr22:36725459-36725539 ( 66) CCCTCCCC 1 chr5:38807264-38807344 ( 48) CTTCCCTC 1 chr19:42721260-42721340 ( 70) CCCTCCCC 1 chr19:55455530-55455610 ( 50) CTGTCTCC 1 chr1:6487718-6487798 ( 46) CTGTTCCC 1 chr10:21325847-21325927 ( 73) CTGTTCCC 1 chr5:133238418-133238498 ( 43) CTGTCTCC 1 chr12:63211556-63211636 ( 71) CCGTCCTC 1 chr19:51882641-51882721 ( 67) CTGTTCCC 1 chr3:120341727-120341807 ( 13) CTGCCCCC 1 chrX:48754492-48754572 ( 20) CCTTCTCC 1 chr11:61737635-61737715 ( 73) CTGCCCCC 1 chr1:236447803-236447883 ( 12) CCCTCCTC 1 chr3:37684675-37684755 ( 7) CTGCCCTC 1 chr15:75244675-75244755 ( 35) CTCTCTTC 1 chr5:40836347-40836427 ( 41) CCTTTCTC 1 chr6:83073346-83073426 ( 46) CTCTCTTC 1 chr11:3426062-3426142 ( 7) CTCTTCTC 1 chr3:129813201-129813281 ( 30) CTCTTCTC 1 chrX:48768434-48768514 ( 54) CCTTCTTC 1 chr12:124117541-12411762 ( 28) CTCTCTTC 1 chr2:120939748-120939828 ( 44) CTTTTTCC 1 chr4:153273964-153274044 ( 24) CCTCCCTC 1 chr15:57511511-57511591 ( 36) CCTCCCTC 1 chr10:112201540-11220162 ( 64) CTTCTCCC 1 chr11:66034865-66034945 ( 4) CTCCCCTC 1 chr14:52118256-52118336 ( 6) CCGTCTCC 1 chr21:22483975-22484055 ( 53) CTTTTTTC 1 chr6:14570290-14570370 ( 46) CTTCTCTC 1 chr1:14924999-14925079 ( 42) CCGCCCCC 1 chr11:126225965-12622604 ( 41) CCGCCCCC 1 chr1:161130833-161130913 ( 61) CTTCTCTC 1 chr1:32913572-32913652 ( 47) CCGCCCCC 1 chr19:8260542-8260622 ( 46) CCGTTCTC 1 chr22:45675800-45675880 ( 60) CTGTTTCC 1 chr16:9164327-9164407 ( 60) CTGTTTCC 1 chr1:200860484-200860564 ( 18) CTGCTCCC 1 chr6:158111996-158112076 ( 8) CCCTTCTC 1 chr1:31364829-31364909 ( 53) CCTCCTCC 1 chr22:17886432-17886512 ( 1) CTCCCTCC 1 chrX:67790646-67790726 ( 70) CTGTTTTC 1 chr9:127275920-127276000 ( 22) CCTCCTTC 1 chrX:47880817-47880897 ( 54) CTCCTCTC 1 chr8:17013347-17013427 ( 53) CTTCTTCC 1 chr16:22103682-22103762 ( 68) CTTCTTCC 1 chr1:24235448-24235528 ( 38) CTCCTCTC 1 chr6:68010443-68010523 ( 73) CCCTTTCC 1 chr12:54763018-54763098 ( 33) CCCCTCCC 1 chr6:33872301-33872381 ( 56) CCCCTCCC 1 chr5:180472184-180472264 ( 17) CTGCTTCC 1 chr19:15607453-15607533 ( 2) CCCTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYBTYCYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 5.2e-006 -1300 206 -1300 -1300 -1300 51 -1300 136 -1300 9 25 82 -1300 29 -1300 146 -1300 146 -1300 41 -1300 148 -1300 36 -1300 109 -1300 93 -1300 206 -1300 -1300 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYBTYCYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 5.2e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.341463 0.000000 0.658537 0.000000 0.256098 0.292683 0.451220 0.000000 0.292683 0.000000 0.707317 0.000000 0.658537 0.000000 0.341463 0.000000 0.670732 0.000000 0.329268 0.000000 0.512195 0.000000 0.487805 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYBTYCYC MEME-1 regular expression -------------------------------------------------------------------------------- C[TC][TGC][TC][CT][CT][CT]C -------------------------------------------------------------------------------- Time 4.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTBTTT MEME-2 width = 8 sites = 31 llr = 256 E-value = 9.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTBTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1::1::: pos.-specific C 1:::3::: probability G :::13::: matrix T 89a94aaa bits 2.1 * *** 1.9 * *** 1.6 * *** 1.4 *** *** Relative 1.2 *** *** Entropy 1.0 **** *** (11.9 bits) 0.8 **** *** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTBTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:75474622-75474702 39 1.84e-05 CTGACTTTGG Tttttttt gttcgtttgg chr1:115327366-115327446 72 1.84e-05 atgtcttctt tttttttt t chr2:205778913-205778993 43 1.84e-05 tgatgagttg tttttttt ccttttcacc chr10:95196988-95197068 31 1.84e-05 TTAAACTGTT TTTTTTTT CTTCTTTCTT chr17:62918669-62918749 41 1.84e-05 ATTGGCtttt tttttttt ttgctttttg chr7:158652682-158652762 73 1.84e-05 GAGttttttt tttttttt chr20:49342141-49342221 60 3.62e-05 ccctgtcttt Ttttgttt tgttgtgttt chr20:42355737-42355817 65 3.62e-05 CGTATttgtt ttttgttt ttgttttt chr10:21325847-21325927 33 3.62e-05 GTTTGTTTCG TTTTGTTT ATTCCAGAAA chr4:80247353-80247433 9 3.62e-05 ATTATTAT TTTTGTTT CAGTTTTAAC chr11:62231165-62231245 69 3.62e-05 TGGGttttgt ttttgttt ttgt chr10:13432885-13432965 15 3.62e-05 tggagtgcac ttttgttt cgtacagaag chr7:116851178-116851258 27 3.62e-05 GATTGAAAAT TTTTGTTT CATTTTGAAA chr6:158226000-158226080 51 5.35e-05 AAAAAATAAT TTTTCTTT ACGAAGGACT chr5:40836347-40836427 33 5.35e-05 ggagaatctg ttttcttt cctttctcag chr6:35231453-35231533 71 5.35e-05 agagactagg ttttcttt tt chr1:150244881-150244961 39 7.21e-05 TATTTTTTAT TTTTATTT TGGTAGTGAC chr21:22483975-22484055 45 7.21e-05 taaagttctc ttttattt cttttttctt chr2:192714156-192714236 11 8.94e-05 ggaagtcaaa cttttttt acatggtact chr3:120341727-120341807 26 1.57e-04 ccccctgtgg ctttcttt ccctagtcct chr2:101212490-101212570 56 1.57e-04 CTGACTCTGA TTTGGTTT CTCAATCTTA chrX:152419856-152419936 38 1.57e-04 ATTTCTTCCA TTTGGTTT TCTCCCAAAT chr1:32913572-32913652 60 1.57e-04 ccccccacgg ctttcttt ccctagtcct chr19:15607453-15607533 61 1.57e-04 AGCTAAAATA CTTTCTTT CTGATTGGTT chr8:74771079-74771159 73 1.74e-04 tgtTGGTTTT TTTGCTTT chr8:106587445-106587525 43 1.92e-04 TGCAGCCATC TATTTTTT GGTGTTAATC chr2:26562375-26562455 50 1.92e-04 ttttaatgta tatttttt tctttcctct chr7:99104175-99104255 1 2.28e-04 . TATTCTTT TGTTCTCCTG chr6:26352778-26352858 20 2.81e-04 atgcagtact gttttttt gaataaccca chrX:10157632-10157712 4 2.81e-04 TCT TTTGATTT GGATGCACTT chr18:77802905-77802985 5 2.99e-04 TTTA ATTTTTTT ATGCTTATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTBTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:75474622-75474702 1.8e-05 38_[+2]_34 chr1:115327366-115327446 1.8e-05 71_[+2]_1 chr2:205778913-205778993 1.8e-05 42_[+2]_30 chr10:95196988-95197068 1.8e-05 30_[+2]_42 chr17:62918669-62918749 1.8e-05 40_[+2]_32 chr7:158652682-158652762 1.8e-05 72_[+2] chr20:49342141-49342221 3.6e-05 59_[+2]_13 chr20:42355737-42355817 3.6e-05 64_[+2]_8 chr10:21325847-21325927 3.6e-05 32_[+2]_40 chr4:80247353-80247433 3.6e-05 8_[+2]_64 chr11:62231165-62231245 3.6e-05 68_[+2]_4 chr10:13432885-13432965 3.6e-05 14_[+2]_58 chr7:116851178-116851258 3.6e-05 26_[+2]_46 chr6:158226000-158226080 5.4e-05 50_[+2]_22 chr5:40836347-40836427 5.4e-05 32_[+2]_40 chr6:35231453-35231533 5.4e-05 70_[+2]_2 chr1:150244881-150244961 7.2e-05 38_[+2]_34 chr21:22483975-22484055 7.2e-05 44_[+2]_28 chr2:192714156-192714236 8.9e-05 10_[+2]_62 chr3:120341727-120341807 0.00016 25_[+2]_47 chr2:101212490-101212570 0.00016 55_[+2]_17 chrX:152419856-152419936 0.00016 37_[+2]_35 chr1:32913572-32913652 0.00016 59_[+2]_13 chr19:15607453-15607533 0.00016 60_[+2]_12 chr8:74771079-74771159 0.00017 72_[+2] chr8:106587445-106587525 0.00019 42_[+2]_30 chr2:26562375-26562455 0.00019 49_[+2]_23 chr7:99104175-99104255 0.00023 [+2]_72 chr6:26352778-26352858 0.00028 19_[+2]_53 chrX:10157632-10157712 0.00028 3_[+2]_69 chr18:77802905-77802985 0.0003 4_[+2]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTBTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTBTTT width=8 seqs=31 chr7:75474622-75474702 ( 39) TTTTTTTT 1 chr1:115327366-115327446 ( 72) TTTTTTTT 1 chr2:205778913-205778993 ( 43) TTTTTTTT 1 chr10:95196988-95197068 ( 31) TTTTTTTT 1 chr17:62918669-62918749 ( 41) TTTTTTTT 1 chr7:158652682-158652762 ( 73) TTTTTTTT 1 chr20:49342141-49342221 ( 60) TTTTGTTT 1 chr20:42355737-42355817 ( 65) TTTTGTTT 1 chr10:21325847-21325927 ( 33) TTTTGTTT 1 chr4:80247353-80247433 ( 9) TTTTGTTT 1 chr11:62231165-62231245 ( 69) TTTTGTTT 1 chr10:13432885-13432965 ( 15) TTTTGTTT 1 chr7:116851178-116851258 ( 27) TTTTGTTT 1 chr6:158226000-158226080 ( 51) TTTTCTTT 1 chr5:40836347-40836427 ( 33) TTTTCTTT 1 chr6:35231453-35231533 ( 71) TTTTCTTT 1 chr1:150244881-150244961 ( 39) TTTTATTT 1 chr21:22483975-22484055 ( 45) TTTTATTT 1 chr2:192714156-192714236 ( 11) CTTTTTTT 1 chr3:120341727-120341807 ( 26) CTTTCTTT 1 chr2:101212490-101212570 ( 56) TTTGGTTT 1 chrX:152419856-152419936 ( 38) TTTGGTTT 1 chr1:32913572-32913652 ( 60) CTTTCTTT 1 chr19:15607453-15607533 ( 61) CTTTCTTT 1 chr8:74771079-74771159 ( 73) TTTGCTTT 1 chr8:106587445-106587525 ( 43) TATTTTTT 1 chr2:26562375-26562455 ( 50) TATTTTTT 1 chr7:99104175-99104255 ( 1) TATTCTTT 1 chr6:26352778-26352858 ( 20) GTTTTTTT 1 chrX:10157632-10157712 ( 4) TTTGATTT 1 chr18:77802905-77802985 ( 5) ATTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTBTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4993 E= 9.3e+001 -299 -89 -293 165 -141 -1160 -1160 182 -1160 -1160 -1160 196 -1160 -1160 -93 177 -141 10 23 47 -1160 -1160 -1160 196 -1160 -1160 -1160 196 -1160 -1160 -1160 196 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTBTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 9.3e+001 0.032258 0.129032 0.032258 0.806452 0.096774 0.000000 0.000000 0.903226 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.129032 0.870968 0.096774 0.258065 0.290323 0.354839 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTBTTT MEME-2 regular expression -------------------------------------------------------------------------------- TTTT[TGC]TTT -------------------------------------------------------------------------------- Time 8.38 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCYCCM MEME-3 width = 8 sites = 23 llr = 200 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCYCCM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::1::4 pos.-specific C a:6a5aa6 probability G ::2::::: matrix T ::3:4::: bits 2.1 ** * ** 1.9 ** * ** 1.6 ** * ** 1.4 ** * ** Relative 1.2 ** * ** Entropy 1.0 ** * *** (12.5 bits) 0.8 ** * *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCCCCC consensus T T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCYCCM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:31364829-31364909 34 1.18e-05 ACCCAGTGCT CACCCCCC CAACCCAACA chr6:33872301-33872381 43 1.18e-05 TGCCTGGCCA CACCCCCC AGCCACCCCT chr19:8260542-8260622 60 2.44e-05 TCTCTCCACT CACCTCCC ACCCTGCAGC chrX:48858044-48858124 34 2.44e-05 ACAGGATCTC CACCTCCC AGGAACAATG chr11:341647-341727 7 2.44e-05 gtgtgg cacctccc ccttctgtct chr15:90356882-90356962 64 2.44e-05 CCCACACGCC CACCTCCC CTCCACAAA chr11:66034865-66034945 46 3.70e-05 AGGCCTTAAT CACCCCCA TTCCGTGCGG chr2:26562375-26562455 24 3.70e-05 caaaacaaca caccccca aaactgcatt chr19:42721260-42721340 47 3.70e-05 GCCGCTCCCG CACCCCCA ACCGCCTCGG chr17:62462298-62462378 28 3.70e-05 tgacagaaac caccccca tgatttaatt chr7:26137940-26138020 45 5.04e-05 GGCTGGTGTT CACCTCCA AGAACTTTCC chr9:127331409-127331489 20 6.30e-05 CTGCATCACC CATCCCCC CCTTTAAGGA chr5:133238418-133238498 70 6.30e-05 TGTTCAGCAG CATCCCCC AAG chr8:145155492-145155572 45 7.64e-05 TATATTCTAC CATCTCCC TACTAGGATA chr2:120939748-120939828 11 7.64e-05 GGTCCCTGAC CATCTCCC TTCTAAGGGG chr22:36725459-36725539 56 8.86e-05 TTTGTCATCC CAGCCCCC TGCCCTCCCC chr2:101212490-101212570 10 1.15e-04 TGGATCTAT CATCCCCA CATTATCTCT chr6:83073346-83073426 33 1.15e-04 GCGCGCAGCC CAGCTCCC CTAGTCTCTC chr20:48669260-48669340 48 1.29e-04 ATGTTCACAC CATCTCCA GAGACCCAAG chr16:84911868-84911948 16 1.55e-04 gggtcacaac caccaccc gtcaaagtgt chr14:69247979-69248059 2 1.55e-04 C CAGCCCCA AGGTCACAAG chrX:48768434-48768514 31 1.55e-04 AGGAAGGAAC CACCACCC TCAGAATAGT chr9:33391517-33391597 39 1.69e-04 GCCAGGAGGC CAGCTCCA AGGGCAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCYCCM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:31364829-31364909 1.2e-05 33_[+3]_39 chr6:33872301-33872381 1.2e-05 42_[+3]_30 chr19:8260542-8260622 2.4e-05 59_[+3]_13 chrX:48858044-48858124 2.4e-05 33_[+3]_39 chr11:341647-341727 2.4e-05 6_[+3]_66 chr15:90356882-90356962 2.4e-05 63_[+3]_9 chr11:66034865-66034945 3.7e-05 45_[+3]_27 chr2:26562375-26562455 3.7e-05 23_[+3]_49 chr19:42721260-42721340 3.7e-05 46_[+3]_26 chr17:62462298-62462378 3.7e-05 27_[+3]_45 chr7:26137940-26138020 5e-05 44_[+3]_28 chr9:127331409-127331489 6.3e-05 19_[+3]_53 chr5:133238418-133238498 6.3e-05 69_[+3]_3 chr8:145155492-145155572 7.6e-05 44_[+3]_28 chr2:120939748-120939828 7.6e-05 10_[+3]_62 chr22:36725459-36725539 8.9e-05 55_[+3]_17 chr2:101212490-101212570 0.00011 9_[+3]_63 chr6:83073346-83073426 0.00011 32_[+3]_40 chr20:48669260-48669340 0.00013 47_[+3]_25 chr16:84911868-84911948 0.00015 15_[+3]_57 chr14:69247979-69248059 0.00015 1_[+3]_71 chrX:48768434-48768514 0.00015 30_[+3]_42 chr9:33391517-33391597 0.00017 38_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCYCCM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCYCCM width=8 seqs=23 chr1:31364829-31364909 ( 34) CACCCCCC 1 chr6:33872301-33872381 ( 43) CACCCCCC 1 chr19:8260542-8260622 ( 60) CACCTCCC 1 chrX:48858044-48858124 ( 34) CACCTCCC 1 chr11:341647-341727 ( 7) CACCTCCC 1 chr15:90356882-90356962 ( 64) CACCTCCC 1 chr11:66034865-66034945 ( 46) CACCCCCA 1 chr2:26562375-26562455 ( 24) CACCCCCA 1 chr19:42721260-42721340 ( 47) CACCCCCA 1 chr17:62462298-62462378 ( 28) CACCCCCA 1 chr7:26137940-26138020 ( 45) CACCTCCA 1 chr9:127331409-127331489 ( 20) CATCCCCC 1 chr5:133238418-133238498 ( 70) CATCCCCC 1 chr8:145155492-145155572 ( 45) CATCTCCC 1 chr2:120939748-120939828 ( 11) CATCTCCC 1 chr22:36725459-36725539 ( 56) CAGCCCCC 1 chr2:101212490-101212570 ( 10) CATCCCCA 1 chr6:83073346-83073426 ( 33) CAGCTCCC 1 chr20:48669260-48669340 ( 48) CATCTCCA 1 chr16:84911868-84911948 ( 16) CACCACCC 1 chr14:69247979-69248059 ( 2) CAGCCCCA 1 chrX:48768434-48768514 ( 31) CACCACCC 1 chr9:33391517-33391597 ( 39) CAGCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCYCCM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 2.2e+003 -1117 206 -1117 -1117 196 -1117 -1117 -1117 -1117 124 -50 3 -1117 206 -1117 -1117 -156 99 -1117 76 -1117 206 -1117 -1117 -1117 206 -1117 -1117 61 134 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCYCCM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.2e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.565217 0.173913 0.260870 0.000000 1.000000 0.000000 0.000000 0.086957 0.478261 0.000000 0.434783 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.391304 0.608696 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCYCCM MEME-3 regular expression -------------------------------------------------------------------------------- CA[CT]C[CT]CC[CA] -------------------------------------------------------------------------------- Time 11.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCGCCC MEME-4 width = 8 sites = 2 llr = 23 E-value = 3.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaa:aaa probability G ::::a::: matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCGCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:48754492-48754572 51 1.13e-05 TCCAACCATG CCCCGCCC CTTTTCAATC chr19:42721260-42721340 13 1.13e-05 AGCGCGTCTC CCCCGCCC AATCGCGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:48754492-48754572 1.1e-05 50_[+4]_22 chr19:42721260-42721340 1.1e-05 12_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCGCCC width=8 seqs=2 chrX:48754492-48754572 ( 51) CCCCGCCC 1 chr19:42721260-42721340 ( 13) CCCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.1e+004 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 -765 201 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCCCGCCC -------------------------------------------------------------------------------- Time 15.39 secs. ******************************************************************************** ******************************************************************************** MOTIF GRAGCAGG MEME-5 width = 8 sites = 17 llr = 155 E-value = 4.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRAGCAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :47::a:: pos.-specific C :1::8::: probability G a53a2:aa matrix T :::::::: bits 2.1 * * *** 1.9 * * *** 1.6 * * *** 1.4 * ***** Relative 1.2 * ***** Entropy 1.0 * ****** (13.1 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGCAGG consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGCAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:57799190-57799270 40 1.46e-05 TCCAGAGGAA GGAGCAGG ACCCTGGCTC chr16:11904089-11904169 65 1.46e-05 cacagagtag ggagcagg ttagagga chr2:43395755-43395835 36 2.97e-05 CCTAGAGACG GAAGCAGG GTCCAGGCTG chr17:62918669-62918749 60 2.97e-05 tgctttttga gaagcagg gccttattct chr7:56189292-56189372 20 2.97e-05 tgtagtgatg gaagcagg aaacatgagt chr22:38426973-38427053 47 2.97e-05 AAGAGGTAAG GAAGCAGG CTACAGACCA chr1:24235448-24235528 55 2.97e-05 CTGGGCAGTG GAAGCAGG TGGGGGAGGG chr1:32698335-32698415 73 2.97e-05 TGGGGTTAGT GAAGCAGG chr11:62475023-62475103 20 4.37e-05 CAATGGGGGA GGGGCAGG CAGTGAACTA chr15:35279036-35279116 54 4.37e-05 tctagcagga ggggcagg gcaagtcctt chr16:31226840-31226920 69 4.37e-05 CCAGGCGGCC GGGGCAGG GTTG chr7:101361543-101361623 42 4.37e-05 AGAGAGATGG GGGGCAGG TCGGGGAGTA chr1:118161227-118161307 34 7.25e-05 GTTAAATAAG GCAGCAGG TGAATAGAAG chr5:175596587-175596667 67 7.25e-05 TGGGAAGAGA GCAGCAGG CTCTTC chr2:217277385-217277465 46 8.75e-05 ATGCCAGCCT GGAGGAGG AAGTGGGCCA chr6:83073346-83073426 16 8.75e-05 ATTTCCACCA GGAGGAGG CGCGCAGCCC chr17:7343885-7343965 9 1.31e-04 CAAGCGAT GGGGGAGG AGAGTTGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGCAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:57799190-57799270 1.5e-05 39_[+5]_33 chr16:11904089-11904169 1.5e-05 64_[+5]_8 chr2:43395755-43395835 3e-05 35_[+5]_37 chr17:62918669-62918749 3e-05 59_[+5]_13 chr7:56189292-56189372 3e-05 19_[+5]_53 chr22:38426973-38427053 3e-05 46_[+5]_26 chr1:24235448-24235528 3e-05 54_[+5]_18 chr1:32698335-32698415 3e-05 72_[+5] chr11:62475023-62475103 4.4e-05 19_[+5]_53 chr15:35279036-35279116 4.4e-05 53_[+5]_19 chr16:31226840-31226920 4.4e-05 68_[+5]_4 chr7:101361543-101361623 4.4e-05 41_[+5]_31 chr1:118161227-118161307 7.2e-05 33_[+5]_39 chr5:175596587-175596667 7.2e-05 66_[+5]_6 chr2:217277385-217277465 8.7e-05 45_[+5]_27 chr6:83073346-83073426 8.7e-05 15_[+5]_57 chr17:7343885-7343965 0.00013 8_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGCAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRAGCAGG width=8 seqs=17 chr16:57799190-57799270 ( 40) GGAGCAGG 1 chr16:11904089-11904169 ( 65) GGAGCAGG 1 chr2:43395755-43395835 ( 36) GAAGCAGG 1 chr17:62918669-62918749 ( 60) GAAGCAGG 1 chr7:56189292-56189372 ( 20) GAAGCAGG 1 chr22:38426973-38427053 ( 47) GAAGCAGG 1 chr1:24235448-24235528 ( 55) GAAGCAGG 1 chr1:32698335-32698415 ( 73) GAAGCAGG 1 chr11:62475023-62475103 ( 20) GGGGCAGG 1 chr15:35279036-35279116 ( 54) GGGGCAGG 1 chr16:31226840-31226920 ( 69) GGGGCAGG 1 chr7:101361543-101361623 ( 42) GGGGCAGG 1 chr1:118161227-118161307 ( 34) GCAGCAGG 1 chr5:175596587-175596667 ( 67) GCAGCAGG 1 chr2:217277385-217277465 ( 46) GGAGGAGG 1 chr6:83073346-83073426 ( 16) GGAGGAGG 1 chr17:7343885-7343965 ( 9) GGGGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGCAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 4.7e+004 -1073 -1073 202 -1073 46 -103 110 -1073 146 -1073 25 -1073 -1073 -1073 202 -1073 -1073 178 -48 -1073 196 -1073 -1073 -1073 -1073 -1073 202 -1073 -1073 -1073 202 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGCAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.7e+004 0.000000 0.000000 1.000000 0.000000 0.352941 0.117647 0.529412 0.000000 0.705882 0.000000 0.294118 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.823529 0.176471 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGCAGG MEME-5 regular expression -------------------------------------------------------------------------------- G[GA][AG]GCAGG -------------------------------------------------------------------------------- Time 18.87 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:70362476-70362556 6.98e-01 80 chr18:46340790-46340870 6.98e-01 80 chr1:204283527-204283607 9.25e-01 80 chr2:231730784-231730864 1.83e-01 80 chr1:32698335-32698415 2.56e-01 72_[+5(2.97e-05)] chr20:49996649-49996729 9.87e-01 80 chr6:11688076-11688156 5.49e-01 80 chr7:116851178-116851258 1.94e-01 26_[+2(3.62e-05)]_46 chr3:170458868-170458948 8.61e-01 80 chr7:136088501-136088581 4.12e-01 80 chr19:15607453-15607533 1.55e-01 80 chr6:35231453-35231533 1.09e-03 70_[+2(5.35e-05)]_2 chrX:67790646-67790726 1.49e-01 80 chr10:69715545-69715625 9.76e-01 80 chr1:32913572-32913652 5.83e-04 80 chr6:68749657-68749737 4.36e-01 80 chr7:134153380-134153460 9.49e-01 80 chr19:51882641-51882721 7.76e-02 80 chr1:24235448-24235528 2.61e-02 54_[+5(2.97e-05)]_18 chr16:11904089-11904169 6.55e-02 64_[+5(1.46e-05)]_8 chr1:113136998-113137078 7.52e-01 80 chr19:18108732-18108812 4.98e-02 12_[+1(6.55e-05)]_60 chr22:38426973-38427053 1.10e-01 46_[+5(2.97e-05)]_26 chr1:161130833-161130913 2.33e-01 80 chr2:159830185-159830265 2.11e-01 80 chr6:88183425-88183505 1.94e-01 80 chr5:78801121-78801201 3.68e-01 80 chr15:70201331-70201411 9.52e-01 80 chr19:3355104-3355184 9.24e-01 80 chr20:52822244-52822324 9.34e-01 80 chr20:61267942-61268022 3.82e-01 80 chr6:153296672-153296752 2.14e-01 80 chr5:32460977-32461057 4.30e-02 15_[+1(7.93e-05)]_57 chr10:116363784-11636386 7.57e-01 80 chrX:48490782-48490862 1.58e-02 6_[+1(1.34e-05)]_66 chr17:39891001-39891081 5.18e-01 80 chr17:62462298-62462378 9.61e-03 27_[+3(3.70e-05)]_45 chr6:68010443-68010523 5.02e-02 80 chr6:148663791-148663871 9.92e-01 80 chr13:47685002-47685082 1.80e-01 80 chr11:6591096-6591176 7.05e-01 80 chr2:120939748-120939828 1.34e-02 10_[+3(7.64e-05)]_62 chr6:80341423-80341503 3.40e-01 80 chr1:236447803-236447883 6.59e-02 80 chr13:110064952-11006503 8.63e-01 80 chr8:126774280-126774360 4.19e-01 80 chr18:12703928-12704008 9.80e-01 80 chr2:43159062-43159142 2.95e-01 80 chr18:77802905-77802985 1.23e-01 80 chr11:61737635-61737715 6.47e-02 80 chrX:10157632-10157712 2.44e-03 80 chr15:90356882-90356962 1.32e-03 23_[+1(4.05e-05)]_32_[+3(2.44e-05)]_\ 9 chr2:192714156-192714236 8.04e-02 10_[+2(8.94e-05)]_62 chr7:158652682-158652762 1.81e-01 65_[+2(1.84e-05)]_7 chr19:42721260-42721340 1.97e-05 12_[+4(1.13e-05)]_26_[+3(3.70e-05)]_\ 26 chr1:212677681-212677761 7.27e-01 80 chr6:158111996-158112076 1.80e-01 80 chr12:124117541-12411762 5.12e-01 80 chr8:30781265-30781345 9.77e-01 80 chr11:341647-341727 4.05e-03 6_[+3(2.44e-05)]_66 chr11:117982160-11798224 5.61e-01 80 chr2:205324058-205324138 7.80e-01 80 chr8:145155492-145155572 2.08e-02 44_[+3(7.64e-05)]_28 chr7:151714207-151714287 8.68e-01 80 chr6:116478249-116478329 8.49e-01 80 chr5:175596587-175596667 1.96e-01 66_[+5(7.25e-05)]_6 chr5:36854733-36854813 9.80e-01 80 chr10:13432885-13432965 5.93e-04 14_[+2(3.62e-05)]_15_[+1(6.55e-05)]_\ 35 chr1:118161227-118161307 3.38e-01 33_[+5(7.25e-05)]_39 chr6:15586319-15586399 8.17e-01 80 chr8:1711289-1711369 2.62e-01 80 chr2:60935904-60935984 9.47e-01 80 chr15:68163483-68163563 8.96e-01 80 chr3:185828129-185828209 5.62e-01 80 chrX:48768434-48768514 2.80e-02 80 chr4:15679212-15679292 9.22e-01 80 chr17:63081675-63081755 7.65e-01 80 chr7:56189292-56189372 1.14e-01 19_[+5(2.97e-05)]_53 chrX:154444156-154444236 6.80e-01 80 chr20:18417118-18417198 9.77e-01 80 chr11:62231165-62231245 2.93e-01 25_[+2(3.62e-05)]_29_[+2(3.62e-05)]_\ 10 chr16:9164327-9164407 8.18e-02 80 chr19:44267998-44268078 5.39e-01 80 chr4:103179152-103179232 5.31e-01 80 chr6:57113261-57113341 9.38e-01 80 chr16:22103682-22103762 3.61e-01 80 chr6:5513728-5513808 8.22e-01 80 chr1:197853509-197853589 8.83e-01 80 chr8:27365239-27365319 2.07e-01 80 chr3:129813201-129813281 1.28e-01 80 chr12:109592583-10959266 2.65e-01 80 chr12:63211556-63211636 1.51e-02 80 chr10:112459810-11245989 5.04e-01 80 chr22:45594292-45594372 5.91e-01 80 chr9:139219186-139219266 5.41e-01 80 chr17:58428553-58428633 5.27e-01 80 chr5:55834552-55834632 3.08e-01 80 chr17:30466245-30466325 5.57e-01 80 chr2:159216407-159216487 9.05e-01 80 chr6:33872301-33872381 1.10e-03 42_[+3(1.18e-05)]_30 chr5:41864164-41864244 4.63e-02 55_[+1(1.34e-05)]_17 chr11:57416689-57416769 7.59e-01 80 chr11:3426062-3426142 1.11e-01 80 chr17:62918669-62918749 2.19e-03 36_[+2(1.84e-05)]_15_[+5(2.97e-05)]_\ 13 chr19:49877146-49877226 3.53e-02 80 chr11:48030552-48030632 4.70e-01 80 chr6:83073346-83073426 6.00e-04 15_[+5(8.75e-05)]_57 chr14:69247979-69248059 3.14e-01 80 chr7:101361543-101361623 7.92e-02 41_[+5(4.37e-05)]_31 chr21:22483975-22484055 3.48e-02 44_[+2(7.21e-05)]_28 chr22:17886432-17886512 4.78e-01 80 chr11:126225965-12622604 1.68e-02 80 chr1:212207616-212207696 8.61e-01 80 chr5:133238418-133238498 9.56e-03 69_[+3(6.30e-05)]_3 chr8:41667812-41667892 8.10e-01 80 chr11:1393206-1393286 4.27e-01 80 chr10:95196988-95197068 1.55e-02 28_[+2(1.84e-05)]_44 chr7:2339198-2339278 8.32e-01 80 chr8:72995938-72996018 3.60e-01 80 chr8:56922747-56922827 8.46e-01 80 chr6:139683210-139683290 7.43e-01 80 chr14:21944647-21944727 8.52e-01 80 chr9:33391517-33391597 7.30e-04 16_[+1(6.55e-05)]_56 chr5:40836347-40836427 1.31e-02 32_[+2(5.35e-05)]_40 chr2:203951242-203951322 1.53e-01 80 chr3:45422485-45422565 2.77e-01 80 chr1:31364829-31364909 5.80e-04 33_[+3(1.18e-05)]_39 chr11:64116117-64116197 6.92e-03 40_[+1(4.05e-05)]_32 chr5:139492713-139492793 1.21e-02 54_[+1(7.93e-05)]_18 chr1:14924999-14925079 1.07e-02 80 chr16:31226840-31226920 6.30e-02 68_[+5(4.37e-05)]_4 chr17:7743415-7743495 1.85e-01 80 chr4:7068314-7068394 6.82e-02 80 chr22:45675800-45675880 6.24e-03 80 chr2:43395755-43395835 1.78e-01 35_[+5(2.97e-05)]_37 chr20:8978533-8978613 7.77e-01 80 chr2:66794177-66794257 6.95e-01 80 chr11:70314753-70314833 7.46e-01 80 chr19:53520299-53520379 6.58e-01 80 chr20:48669260-48669340 9.24e-02 80 chr2:26562375-26562455 9.35e-05 23_[+3(3.70e-05)]_27_[+1(2.76e-05)]_\ 14 chr19:44139370-44139450 3.92e-03 46_[+1(6.55e-05)]_26 chr5:65220659-65220739 8.41e-01 80 chr5:180472184-180472264 3.23e-01 80 chr1:147013227-147013307 7.00e-01 80 chr17:7343885-7343965 3.97e-02 80 chr18:46472928-46473008 4.40e-01 80 chr21:40723507-40723587 8.70e-01 80 chr3:125776092-125776172 1.28e-01 80 chr3:72201909-72201989 3.27e-01 80 chr7:44152368-44152448 1.83e-01 80 chr10:99093408-99093488 1.58e-01 80 chr9:135285405-135285485 5.85e-01 80 chr12:56615199-56615279 1.09e-01 80 chr9:33375433-33375513 9.91e-01 80 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************