******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PML.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:207779266-207779346 1.0000 80 chr2:108972844-108972924 1.0000 80 chr3:129118878-129118958 1.0000 80 chr14:23120363-23120443 1.0000 80 chr16:57716854-57716934 1.0000 80 chr3:13044180-13044260 1.0000 80 chr15:75052815-75052895 1.0000 80 chr5:77075000-77075080 1.0000 80 chr11:120107410-12010749 1.0000 80 chr11:117997315-11799739 1.0000 80 chr15:45019347-45019427 1.0000 80 chr17:10694318-10694398 1.0000 80 chr8:125827833-125827913 1.0000 80 chr6:28188464-28188544 1.0000 80 chr10:23344666-23344746 1.0000 80 chr2:30884261-30884341 1.0000 80 chr1:234740786-234740866 1.0000 80 chr1:95100703-95100783 1.0000 80 chrX:153191272-153191352 1.0000 80 chr2:145116815-145116895 1.0000 80 chr3:16977899-16977979 1.0000 80 chr17:56743917-56743997 1.0000 80 chr1:210547455-210547535 1.0000 80 chr6:15211425-15211505 1.0000 80 chr5:173615423-173615503 1.0000 80 chr12:65114767-65114847 1.0000 80 chr8:117614911-117614991 1.0000 80 chr6:15211626-15211706 1.0000 80 chr2:68666102-68666182 1.0000 80 chr3:112360021-112360101 1.0000 80 chr17:41393333-41393413 1.0000 80 chr6:37465162-37465242 1.0000 80 chr11:61266664-61266744 1.0000 80 chr19:5309104-5309184 1.0000 80 chr2:217957625-217957705 1.0000 80 chr7:24903971-24904051 1.0000 80 chr6:150881285-150881365 1.0000 80 chr5:111885597-111885677 1.0000 80 chr1:149215135-149215215 1.0000 80 chr5:95220357-95220437 1.0000 80 chr4:25052516-25052596 1.0000 80 chr20:35783244-35783324 1.0000 80 chr4:185115175-185115255 1.0000 80 chr7:132174719-132174799 1.0000 80 chr7:117581673-117581753 1.0000 80 chr1:48643122-48643202 1.0000 80 chr6:70320070-70320150 1.0000 80 chr1:147735855-147735935 1.0000 80 chr14:51135337-51135417 1.0000 80 chrX:107801626-107801706 1.0000 80 chr9:101836650-101836730 1.0000 80 chr19:13694039-13694119 1.0000 80 chr2:158108531-158108611 1.0000 80 chr21:46493752-46493832 1.0000 80 chr6:152554063-152554143 1.0000 80 chr10:63540229-63540309 1.0000 80 chr20:52369752-52369832 1.0000 80 chr4:160116695-160116775 1.0000 80 chr10:127293913-12729399 1.0000 80 chr9:125016697-125016777 1.0000 80 chrX:119468588-119468668 1.0000 80 chr20:37192564-37192644 1.0000 80 chr4:151695355-151695435 1.0000 80 chr15:64731390-64731470 1.0000 80 chr9:130188240-130188320 1.0000 80 chr17:57779886-57779966 1.0000 80 chr9:110556747-110556827 1.0000 80 chr2:42423651-42423731 1.0000 80 chr10:16933963-16934043 1.0000 80 chr12:60538332-60538412 1.0000 80 chr2:68220609-68220689 1.0000 80 chr17:41445352-41445432 1.0000 80 chr6:21102081-21102161 1.0000 80 chr17:33212286-33212366 1.0000 80 chr22:30348257-30348337 1.0000 80 chr11:121097350-12109743 1.0000 80 chr6:28688331-28688411 1.0000 80 chr1:26087563-26087643 1.0000 80 chr20:39679418-39679498 1.0000 80 chr5:158555194-158555274 1.0000 80 chr16:9085946-9086026 1.0000 80 chrX:16789804-16789884 1.0000 80 chr3:156178180-156178260 1.0000 80 chr4:38324908-38324988 1.0000 80 chr1:214176675-214176755 1.0000 80 chr7:5123101-5123181 1.0000 80 chrX:134996746-134996826 1.0000 80 chr6:74238822-74238902 1.0000 80 chr1:156430456-156430536 1.0000 80 chr22:29548752-29548832 1.0000 80 chr5:131987926-131988006 1.0000 80 chr7:37397327-37397407 1.0000 80 chr3:4266835-4266915 1.0000 80 chr1:206274321-206274401 1.0000 80 chr3:143734126-143734206 1.0000 80 chr4:184270602-184270682 1.0000 80 chr8:23526282-23526362 1.0000 80 chr12:7053041-7053121 1.0000 80 chr7:106650753-106650833 1.0000 80 chr6:20575567-20575647 1.0000 80 chr2:15696586-15696666 1.0000 80 chr11:1372917-1372997 1.0000 80 chr6:31795516-31795596 1.0000 80 chr7:765371-765451 1.0000 80 chr22:40725278-40725358 1.0000 80 chr20:42639101-42639181 1.0000 80 chr8:21818120-21818200 1.0000 80 chrX:109202808-109202888 1.0000 80 chr4:103277043-103277123 1.0000 80 chr4:79405853-79405933 1.0000 80 chr16:21272953-21273033 1.0000 80 chr22:19631459-19631539 1.0000 80 chr3:148869726-148869806 1.0000 80 chr7:66387282-66387362 1.0000 80 chr8:67967431-67967511 1.0000 80 chr3:179093033-179093113 1.0000 80 chr11:95276144-95276224 1.0000 80 chr16:2205286-2205366 1.0000 80 chr3:32750329-32750409 1.0000 80 chr10:14227605-14227685 1.0000 80 chr9:127727097-127727177 1.0000 80 chr7:135718354-135718434 1.0000 80 chr3:53384812-53384892 1.0000 80 chr9:131038567-131038647 1.0000 80 chr8:106532843-106532923 1.0000 80 chr12:128801818-12880189 1.0000 80 chr16:58894019-58894099 1.0000 80 chrX:23801283-23801363 1.0000 80 chr4:109035775-109035855 1.0000 80 chr4:81174840-81174920 1.0000 80 chr2:84178567-84178647 1.0000 80 chr3:141765353-141765433 1.0000 80 chr17:26421241-26421321 1.0000 80 chr13:44972152-44972232 1.0000 80 chr6:119863412-119863492 1.0000 80 chr12:94316418-94316498 1.0000 80 chr12:28345227-28345307 1.0000 80 chr9:99443211-99443291 1.0000 80 chr7:2913785-2913865 1.0000 80 chr5:16528734-16528814 1.0000 80 chr8:86290461-86290541 1.0000 80 chr7:10747333-10747413 1.0000 80 chr7:119566113-119566193 1.0000 80 chr14:55850714-55850794 1.0000 80 chr5:95404017-95404097 1.0000 80 chr3:129180865-129180945 1.0000 80 chr16:25783258-25783338 1.0000 80 chr12:92798852-92798932 1.0000 80 chr6:106968837-106968917 1.0000 80 chr3:10020822-10020902 1.0000 80 chr16:14726496-14726576 1.0000 80 chr11:82503040-82503120 1.0000 80 chr9:101338764-101338844 1.0000 80 chr2:30884469-30884549 1.0000 80 chr7:6096384-6096464 1.0000 80 chr1:109677198-109677278 1.0000 80 chr2:64582037-64582117 1.0000 80 chr4:79531800-79531880 1.0000 80 chr8:93107690-93107770 1.0000 80 chr1:206266200-206266280 1.0000 80 chr4:122715800-122715880 1.0000 80 chr17:39834887-39834967 1.0000 80 chr1:78470068-78470148 1.0000 80 chr17:56409789-56409869 1.0000 80 chr3:196715536-196715616 1.0000 80 chr11:67116027-67116107 1.0000 80 chr18:67693003-67693083 1.0000 80 chr8:56926585-56926665 1.0000 80 chr2:236982070-236982150 1.0000 80 chr3:137918878-137918958 1.0000 80 chr12:49525096-49525176 1.0000 80 chr17:57915293-57915373 1.0000 80 chr3:195805966-195806046 1.0000 80 chr1:76251937-76252017 1.0000 80 chr3:182655585-182655665 1.0000 80 chr10:62022653-62022733 1.0000 80 chr19:2476131-2476211 1.0000 80 chr1:57684551-57684631 1.0000 80 chr1:28832551-28832631 1.0000 80 chr3:154736927-154737007 1.0000 80 chr1:224580470-224580550 1.0000 80 chr1:222883247-222883327 1.0000 80 chr5:55606790-55606870 1.0000 80 chr7:105659271-105659351 1.0000 80 chrX:55041577-55041657 1.0000 80 chr7:127627055-127627135 1.0000 80 chr2:74311053-74311133 1.0000 80 chr7:39849960-39850040 1.0000 80 chr10:43880360-43880440 1.0000 80 chr12:25086968-25087048 1.0000 80 chr6:111195962-111196042 1.0000 80 chr3:32750975-32751055 1.0000 80 chr7:102082186-102082266 1.0000 80 chr1:179941157-179941237 1.0000 80 chr5:89954569-89954649 1.0000 80 chr6:159920212-159920292 1.0000 80 chr6:7900002-7900082 1.0000 80 chr19:54704727-54704807 1.0000 80 chr4:83668041-83668121 1.0000 80 chr17:62502344-62502424 1.0000 80 chr3:105333306-105333386 1.0000 80 chr15:31270661-31270741 1.0000 80 chr15:84131758-84131838 1.0000 80 chr8:101734229-101734309 1.0000 80 chr2:179134655-179134735 1.0000 80 chr2:10533331-10533411 1.0000 80 chr8:30892376-30892456 1.0000 80 chr4:20700594-20700674 1.0000 80 chr1:70005914-70005994 1.0000 80 chrX:47676965-47677045 1.0000 80 chr5:168240749-168240829 1.0000 80 chr2:178504423-178504503 1.0000 80 chr9:128003526-128003606 1.0000 80 chr6:108880380-108880460 1.0000 80 chr6:123033612-123033692 1.0000 80 chr8:21366935-21367015 1.0000 80 chr6:26235089-26235169 1.0000 80 chr1:87645973-87646053 1.0000 80 chr3:98302760-98302840 1.0000 80 chr10:70883586-70883666 1.0000 80 chr6:28188664-28188744 1.0000 80 chr2:86416678-86416758 1.0000 80 chr6:106344212-106344292 1.0000 80 chr9:100987551-100987631 1.0000 80 chr15:39432310-39432390 1.0000 80 chr16:75077144-75077224 1.0000 80 chr6:31704212-31704292 1.0000 80 chr8:96105524-96105604 1.0000 80 chr8:49379293-49379373 1.0000 80 chr8:99318570-99318650 1.0000 80 chr5:148126512-148126592 1.0000 80 chrX:49963277-49963357 1.0000 80 chr1:207823471-207823551 1.0000 80 chr3:182083026-182083106 1.0000 80 chr20:5469595-5469675 1.0000 80 chr5:148018800-148018880 1.0000 80 chr10:121904752-12190483 1.0000 80 chr16:8688307-8688387 1.0000 80 chr15:35459069-35459149 1.0000 80 chr5:89940136-89940216 1.0000 80 chr1:65783718-65783798 1.0000 80 chr1:201123020-201123100 1.0000 80 chr5:53606536-53606616 1.0000 80 chr15:43513479-43513559 1.0000 80 chr16:15615928-15616008 1.0000 80 chr19:52011494-52011574 1.0000 80 chr10:127505260-12750534 1.0000 80 chr9:90419038-90419118 1.0000 80 chr16:10591142-10591222 1.0000 80 chr10:17045281-17045361 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PML/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PML.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.228 G 0.239 T 0.265 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.228 G 0.239 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VAGATAAG MEME-1 width = 8 sites = 71 llr = 539 E-value = 2.0e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 27:a:9a1 pos.-specific C 4::::::1 probability G 4:a::::7 matrix T :3::a1:1 bits 2.1 * 1.9 ** * 1.7 *** * 1.5 *** * Relative 1.3 ***** Entropy 1.1 ****** (11.0 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:90419038-90419118 37 1.78e-05 CTGGGAAGGC CAGATAAG AGCGCTGAGA chr19:52011494-52011574 60 1.78e-05 GCTGGTAGCC CAGATAAG GGGAGTTCCC chr8:49379293-49379373 52 1.78e-05 cgcacttaac cagataag acatgaccct chrX:47676965-47677045 46 1.78e-05 CAGTTAGGGC CAGATAAG CCTAACTGCA chr14:55850714-55850794 50 1.78e-05 CTGCCTGCCA CAGATAAG ACTGTGGCCA chr20:42639101-42639181 46 1.78e-05 CTGGGAAAAC CAGATAAG GAGATGTACA chr20:35783244-35783324 73 1.78e-05 aggagaagag cagataag chr4:25052516-25052596 24 1.78e-05 CTGTTAGGGT CAGATAAG TCCTGGTTAG chr15:35459069-35459149 45 3.65e-05 GAGCTTAAGA GAGATAAG ACATGACTTT chr8:21366935-21367015 58 3.65e-05 atgtggaaca gagataag ccatccaagc chr1:179941157-179941237 41 3.65e-05 CTGGATGACT GAGATAAG GAATACCTCG chr7:10747333-10747413 10 3.65e-05 caggctaga gagataag gccttctggt chr8:23526282-23526362 15 3.65e-05 ATGGTGGTTG GAGATAAG CTTATCTGGT chr17:33212286-33212366 62 3.65e-05 CTGCTTCTTG GAGATAAG CTCCCAATAG chr12:60538332-60538412 54 3.65e-05 ttggctcagc gagataag aaataagggg chr1:201123020-201123100 16 5.74e-05 ACAGCCACCA AAGATAAG AGCTTCATGC chr1:65783718-65783798 16 5.74e-05 tggtgctggg aagataag acccaggtca chr15:31270661-31270741 49 5.74e-05 AGCTGGCTGG AAGATAAG GGCTGTTTGG chr7:135718354-135718434 54 5.74e-05 GTGTTCTTTC AAGATAAG ACAGCTGCTC chr2:15696586-15696666 54 5.74e-05 ATGGACATTC AAGATAAG CCTGAGAATA chr5:131987926-131988006 47 5.74e-05 ctgggaggcc aagataag aggatcactt chr10:127505260-12750534 8 7.50e-05 CCTGTCA CTGATAAG GCCAAGAAAG chr4:20700594-20700674 10 7.50e-05 gactcatag ctgataag gggtggtgag chr1:109677198-109677278 20 7.50e-05 CGTTGGCCTA CTGATAAG AAACCGTGGC chr8:86290461-86290541 64 7.50e-05 gtgtgagaac ctgataag ggaagtggt chr9:99443211-99443291 50 7.50e-05 GCAGCTATAT CTGATAAG CATAGACACT chrX:119468588-119468668 8 7.50e-05 gctccta ctgataag gtcccctagc chrX:107801626-107801706 26 7.50e-05 TGTAAAGGTG CTGATAAG ATATGATGGG chr7:24903971-24904051 67 7.50e-05 atgtgcattg ctgataag ttcccg chr15:39432310-39432390 7 9.35e-05 CCTGCA GTGATAAG AGCACAGCTG chr8:106532843-106532923 26 9.35e-05 ATGGTTGATT GTGATAAG CATTGTCGTA chr8:67967431-67967511 65 9.35e-05 tgtgcagtct gtgataag gactaagg chr6:20575567-20575647 70 9.35e-05 TCTTGTCAGT GTGATAAG GGA chr10:121904752-12190483 70 1.14e-04 CTGCAAATCA ATGATAAG AAA chr4:79531800-79531880 17 1.14e-04 GTGGTAATGC ATGATAAG TTATTTCAGC chr3:141765353-141765433 10 1.14e-04 ACAGAGGTA ATGATAAG AGAGATGGGA chr2:42423651-42423731 29 1.14e-04 CTGTGAGACT ATGATAAG AGTTCCGTCT chr7:39849960-39850040 25 1.31e-04 GCACATGGGC CAGATAAC ACAGCACAGC chr3:154736927-154737007 60 1.31e-04 ACTGTTAGAG CAGATAAC CTTGTGCAAT chr4:122715800-122715880 31 1.31e-04 ctgtaaaaga cagataaC GAATACTggt chr3:105333306-105333386 66 1.49e-04 TGCTTGGAAA GAGATAAC ATGTTTC chr4:109035775-109035855 44 1.49e-04 AATGTCTGAG GAGATAAC ACGAAAATAC chr2:68220609-68220689 22 1.49e-04 ATGGTTTTCA GAGATAAC TAAACCACCA chr9:110556747-110556827 44 1.67e-04 TGGTTTGTCA CAGATTAG ATTGTGCAAA chr10:17045281-17045361 58 2.05e-04 GTCTGCGCCT GAGATTAG AACCAGACAG chr16:15615928-15616008 8 2.05e-04 TGGGTTT CAGATAAT TAAGTATCTT chr20:37192564-37192644 24 2.05e-04 ctgaagagga gagaTTAG CCAGATCTCA chr6:152554063-152554143 28 2.05e-04 ttgcttagga gagattag gcatgtacac chr6:7900002-7900082 73 2.25e-04 AACGTTCCAG GAGATAAT chr6:74238822-74238902 60 2.25e-04 ctgtaaaaag gagataat aataactatt chr1:26087563-26087643 50 2.25e-04 ctgttacact gagataat cccttgtcgg chr5:168240749-168240829 73 2.86e-04 CAGGCTGAGC GAGATAAA chr7:119566113-119566193 52 2.86e-04 TGCTGTTTAT GAGATAAA AGCACAGTTG chr7:106650753-106650833 57 2.86e-04 GATGCATGTT GAGATAAA ATCCGGATCT chr6:123033612-123033692 26 3.24e-04 TGGAGAGAGG TAGATAAG GCATTTGGTT chr3:137918878-137918958 66 3.24e-04 gtggcattca tagataag ttaactg chr12:128801818-12880189 48 3.24e-04 GTAAACTCAG CTGATAAC ACGTTTATCT chr1:206274321-206274401 41 3.24e-04 ccgtcctgtc ctgataac tgaccaccaa chr10:14227605-14227685 59 3.78e-04 GTTAGCTGTG CAGATGAG CAGAAGAGAG chr4:103277043-103277123 31 3.78e-04 GCTGGAGAGT AAGATTAG AAAAATGGGA chr4:151695355-151695435 48 3.78e-04 gtgactatga aagattag gccttcaaca chr5:95220357-95220437 2 3.78e-04 A AAGATTAG TCTTATCCTA chr12:65114767-65114847 54 3.78e-04 TCCAGATGGT CAGATGAG GGTTGCCAGA chr5:173615423-173615503 8 3.78e-04 CCATTTA CAGATGAG GGCAGCTGTT chrX:55041577-55041657 29 5.29e-04 GCAGTCGTAG CTGATAAT TCTGCTGCTT chr1:224580470-224580550 27 5.29e-04 CTGTACCACA AAGATAAA AGTGTAGGGA chr8:93107690-93107770 42 5.29e-04 GGAGGGAGAG GAGAGAAG CCAACGTGCA chr6:119863412-119863492 43 5.29e-04 GTGCTGTTGT CTGATAAT GGTTATCGCT chr7:37397327-37397407 47 5.29e-04 AGTTTGGTTT AAGATAAA ACACAGTCAG chr19:5309104-5309184 48 5.29e-04 CGGGGGTGGA GAGAGAAG GGAGGAAGGG chr11:120107410-12010749 72 5.29e-04 GCAAGTCTGA GAGAGAAG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:90419038-90419118 1.8e-05 36_[+1]_36 chr19:52011494-52011574 1.8e-05 59_[+1]_13 chr8:49379293-49379373 1.8e-05 51_[+1]_21 chrX:47676965-47677045 1.8e-05 45_[+1]_27 chr14:55850714-55850794 1.8e-05 49_[+1]_23 chr20:42639101-42639181 1.8e-05 45_[+1]_27 chr20:35783244-35783324 1.8e-05 72_[+1] chr4:25052516-25052596 1.8e-05 23_[+1]_49 chr15:35459069-35459149 3.6e-05 44_[+1]_28 chr8:21366935-21367015 3.6e-05 57_[+1]_15 chr1:179941157-179941237 3.6e-05 40_[+1]_32 chr7:10747333-10747413 3.6e-05 9_[+1]_63 chr8:23526282-23526362 3.6e-05 14_[+1]_58 chr17:33212286-33212366 3.6e-05 61_[+1]_11 chr12:60538332-60538412 3.6e-05 53_[+1]_19 chr1:201123020-201123100 5.7e-05 15_[+1]_57 chr1:65783718-65783798 5.7e-05 15_[+1]_57 chr15:31270661-31270741 5.7e-05 48_[+1]_24 chr7:135718354-135718434 5.7e-05 53_[+1]_19 chr2:15696586-15696666 5.7e-05 53_[+1]_19 chr5:131987926-131988006 5.7e-05 46_[+1]_26 chr10:127505260-12750534 7.5e-05 7_[+1]_65 chr4:20700594-20700674 7.5e-05 9_[+1]_63 chr1:109677198-109677278 7.5e-05 19_[+1]_53 chr8:86290461-86290541 7.5e-05 63_[+1]_9 chr9:99443211-99443291 7.5e-05 49_[+1]_23 chrX:119468588-119468668 7.5e-05 7_[+1]_65 chrX:107801626-107801706 7.5e-05 25_[+1]_47 chr7:24903971-24904051 7.5e-05 66_[+1]_6 chr15:39432310-39432390 9.3e-05 6_[+1]_66 chr8:106532843-106532923 9.3e-05 25_[+1]_47 chr8:67967431-67967511 9.3e-05 64_[+1]_8 chr6:20575567-20575647 9.3e-05 69_[+1]_3 chr10:121904752-12190483 0.00011 69_[+1]_3 chr4:79531800-79531880 0.00011 16_[+1]_56 chr3:141765353-141765433 0.00011 9_[+1]_63 chr2:42423651-42423731 0.00011 28_[+1]_44 chr7:39849960-39850040 0.00013 24_[+1]_48 chr3:154736927-154737007 0.00013 59_[+1]_13 chr4:122715800-122715880 0.00013 30_[+1]_42 chr3:105333306-105333386 0.00015 65_[+1]_7 chr4:109035775-109035855 0.00015 43_[+1]_29 chr2:68220609-68220689 0.00015 21_[+1]_51 chr9:110556747-110556827 0.00017 43_[+1]_29 chr10:17045281-17045361 0.0002 57_[+1]_15 chr16:15615928-15616008 0.0002 7_[+1]_65 chr20:37192564-37192644 0.0002 23_[+1]_49 chr6:152554063-152554143 0.0002 27_[+1]_45 chr6:7900002-7900082 0.00023 72_[+1] chr6:74238822-74238902 0.00023 59_[+1]_13 chr1:26087563-26087643 0.00023 49_[+1]_23 chr5:168240749-168240829 0.00029 72_[+1] chr7:119566113-119566193 0.00029 51_[+1]_21 chr7:106650753-106650833 0.00029 56_[+1]_16 chr6:123033612-123033692 0.00032 25_[+1]_47 chr3:137918878-137918958 0.00032 65_[+1]_7 chr12:128801818-12880189 0.00032 47_[+1]_25 chr1:206274321-206274401 0.00032 40_[+1]_32 chr10:14227605-14227685 0.00038 58_[+1]_14 chr4:103277043-103277123 0.00038 30_[+1]_42 chr4:151695355-151695435 0.00038 47_[+1]_25 chr5:95220357-95220437 0.00038 1_[+1]_71 chr12:65114767-65114847 0.00038 53_[+1]_19 chr5:173615423-173615503 0.00038 7_[+1]_65 chrX:55041577-55041657 0.00053 28_[+1]_44 chr1:224580470-224580550 0.00053 26_[+1]_46 chr8:93107690-93107770 0.00053 41_[+1]_31 chr6:119863412-119863492 0.00053 42_[+1]_30 chr7:37397327-37397407 0.00053 46_[+1]_26 chr19:5309104-5309184 0.00053 47_[+1]_25 chr11:120107410-12010749 0.00053 71_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAGATAAG width=8 seqs=71 chr9:90419038-90419118 ( 37) CAGATAAG 1 chr19:52011494-52011574 ( 60) CAGATAAG 1 chr8:49379293-49379373 ( 52) CAGATAAG 1 chrX:47676965-47677045 ( 46) CAGATAAG 1 chr14:55850714-55850794 ( 50) CAGATAAG 1 chr20:42639101-42639181 ( 46) CAGATAAG 1 chr20:35783244-35783324 ( 73) CAGATAAG 1 chr4:25052516-25052596 ( 24) CAGATAAG 1 chr15:35459069-35459149 ( 45) GAGATAAG 1 chr8:21366935-21367015 ( 58) GAGATAAG 1 chr1:179941157-179941237 ( 41) GAGATAAG 1 chr7:10747333-10747413 ( 10) GAGATAAG 1 chr8:23526282-23526362 ( 15) GAGATAAG 1 chr17:33212286-33212366 ( 62) GAGATAAG 1 chr12:60538332-60538412 ( 54) GAGATAAG 1 chr1:201123020-201123100 ( 16) AAGATAAG 1 chr1:65783718-65783798 ( 16) AAGATAAG 1 chr15:31270661-31270741 ( 49) AAGATAAG 1 chr7:135718354-135718434 ( 54) AAGATAAG 1 chr2:15696586-15696666 ( 54) AAGATAAG 1 chr5:131987926-131988006 ( 47) AAGATAAG 1 chr10:127505260-12750534 ( 8) CTGATAAG 1 chr4:20700594-20700674 ( 10) CTGATAAG 1 chr1:109677198-109677278 ( 20) CTGATAAG 1 chr8:86290461-86290541 ( 64) CTGATAAG 1 chr9:99443211-99443291 ( 50) CTGATAAG 1 chrX:119468588-119468668 ( 8) CTGATAAG 1 chrX:107801626-107801706 ( 26) CTGATAAG 1 chr7:24903971-24904051 ( 67) CTGATAAG 1 chr15:39432310-39432390 ( 7) GTGATAAG 1 chr8:106532843-106532923 ( 26) GTGATAAG 1 chr8:67967431-67967511 ( 65) GTGATAAG 1 chr6:20575567-20575647 ( 70) GTGATAAG 1 chr10:121904752-12190483 ( 70) ATGATAAG 1 chr4:79531800-79531880 ( 17) ATGATAAG 1 chr3:141765353-141765433 ( 10) ATGATAAG 1 chr2:42423651-42423731 ( 29) ATGATAAG 1 chr7:39849960-39850040 ( 25) CAGATAAC 1 chr3:154736927-154737007 ( 60) CAGATAAC 1 chr4:122715800-122715880 ( 31) CAGATAAC 1 chr3:105333306-105333386 ( 66) GAGATAAC 1 chr4:109035775-109035855 ( 44) GAGATAAC 1 chr2:68220609-68220689 ( 22) GAGATAAC 1 chr9:110556747-110556827 ( 44) CAGATTAG 1 chr10:17045281-17045361 ( 58) GAGATTAG 1 chr16:15615928-15616008 ( 8) CAGATAAT 1 chr20:37192564-37192644 ( 24) GAGATTAG 1 chr6:152554063-152554143 ( 28) GAGATTAG 1 chr6:7900002-7900082 ( 73) GAGATAAT 1 chr6:74238822-74238902 ( 60) GAGATAAT 1 chr1:26087563-26087643 ( 50) GAGATAAT 1 chr5:168240749-168240829 ( 73) GAGATAAA 1 chr7:119566113-119566193 ( 52) GAGATAAA 1 chr7:106650753-106650833 ( 57) GAGATAAA 1 chr6:123033612-123033692 ( 26) TAGATAAG 1 chr3:137918878-137918958 ( 66) TAGATAAG 1 chr12:128801818-12880189 ( 48) CTGATAAC 1 chr1:206274321-206274401 ( 41) CTGATAAC 1 chr10:14227605-14227685 ( 59) CAGATGAG 1 chr4:103277043-103277123 ( 31) AAGATTAG 1 chr4:151695355-151695435 ( 48) AAGATTAG 1 chr5:95220357-95220437 ( 2) AAGATTAG 1 chr12:65114767-65114847 ( 54) CAGATGAG 1 chr5:173615423-173615503 ( 8) CAGATGAG 1 chrX:55041577-55041657 ( 29) CTGATAAT 1 chr1:224580470-224580550 ( 27) AAGATAAA 1 chr8:93107690-93107770 ( 42) GAGAGAAG 1 chr6:119863412-119863492 ( 43) CTGATAAT 1 chr7:37397327-37397407 ( 47) AAGATAAA 1 chr19:5309104-5309184 ( 48) GAGAGAAG 1 chr11:120107410-12010749 ( 72) GAGAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.78941 E= 2.0e-019 -34 79 62 -323 142 -1279 -1279 9 -1279 -1279 207 -1279 190 -1279 -1279 -1279 -1279 -1279 -250 185 168 -1279 -250 -143 190 -1279 -1279 -1279 -193 -102 162 -165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 2.0e-019 0.211268 0.394366 0.366197 0.028169 0.718310 0.000000 0.000000 0.281690 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.042254 0.957746 0.859155 0.000000 0.042254 0.098592 1.000000 0.000000 0.000000 0.000000 0.070423 0.112676 0.732394 0.084507 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 regular expression -------------------------------------------------------------------------------- [CGA][AT]GATAAG -------------------------------------------------------------------------------- Time 5.02 secs. ******************************************************************************** ******************************************************************************** MOTIF BYTTATCW MEME-2 width = 8 sites = 48 llr = 392 E-value = 1.2e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif BYTTATCW MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a::4 pos.-specific C 35::::a: probability G 32:::::: matrix T 43aa:a:6 bits 2.1 * 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.8 bits) 0.9 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCT consensus CT A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYTTATCW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:96105524-96105604 6 1.82e-05 aaact tcttatct gaggaatgca chr10:62022653-62022733 60 1.82e-05 ACTACTGCTA TCTTATCT GGCACATGCT chr9:101338764-101338844 39 1.82e-05 CTTACTACAG TCTTATCT TAAgggccag chr3:53384812-53384892 22 1.82e-05 ttttatggtg tcttatct tcctctggca chr1:48643122-48643202 44 1.82e-05 acaagatttt tcttatct atggccggca chr6:28188464-28188544 59 1.82e-05 tttgaatatt tcttatct cggggcagtg chr6:159920212-159920292 20 5.03e-05 tccatttcac ccttatct atagggtgca chr1:57684551-57684631 25 5.03e-05 GAGGGGAGGG GCTTATCT AGCCACAGCA chr11:67116027-67116107 65 5.03e-05 gccttggttt ccttatct gtaaaaca chr12:92798852-92798932 21 5.03e-05 GCTTCTTCTG CCTTATCT TTGGTCTCCT chr3:129180865-129180945 25 5.03e-05 gttccagttc ccttatct aaaaggagca chr7:119566113-119566193 10 5.03e-05 TTCTAAGAA CCTTATCT TATTTGGTTG chr4:79405853-79405933 16 5.03e-05 atccattaag ccttatct cacttgctca chr8:21818120-21818200 13 5.03e-05 GACTTGCCAT CCTTATCT CATGCACGCC chr22:30348257-30348337 7 5.03e-05 TTAGCA GCTTATCT GTGCCCCACA chr5:89954569-89954649 1 6.87e-05 . TCTTATCA ACCTTCTTGG chr1:206266200-206266280 27 6.87e-05 ttcctctttt tcttatca ctgttaccca chr16:58894019-58894099 6 6.87e-05 TCCGT TCTTATCA GACACACCAC chr1:214176675-214176755 19 6.87e-05 TGCCTAAAAC TCTTATCA CAAGGCAGTC chr1:201123020-201123100 32 1.01e-04 AGAGCTTCAT GCTTATCA GGCTTGCTGG chr5:148018800-148018880 53 1.01e-04 aatccaaatt ccttatca tagctaacca chr2:74311053-74311133 17 1.01e-04 GAGACCATGG CCTTATCA GTGTCCACAG chr3:195805966-195806046 44 1.01e-04 GTTACAAAAA GCTTATCA CTACCACTCC chr2:236982070-236982150 4 1.01e-04 ATA GCTTATCA GGACAGGAGT chr7:6096384-6096464 28 1.01e-04 TTGCAGAAAC CCTTATCA CAATGTTACA chrX:119468588-119468668 37 1.01e-04 aaaaagctct ccttatca cagggatcag chrX:49963277-49963357 20 1.22e-04 ATGAGTCATT TTTTATCT TACCACTTTC chr16:75077144-75077224 69 1.22e-04 CCAGACATGG TTTTATCT TTTC chr7:37397327-37397407 6 1.22e-04 CTAGT TTTTATCT GAGCTGCCTC chr9:125016697-125016777 59 1.22e-04 CTGCAAGCAC TTTTATCT GCTGCTGAAG chr3:182655585-182655665 67 1.60e-04 acttgtcact gtttatct ttctga chr7:2913785-2913865 26 1.60e-04 TCCATCCTTG CTTTATCT ACTCTGTTCT chr4:81174840-81174920 14 1.60e-04 GGCTCGCATG CTTTATCT TCTAGGGTCA chr12:128801818-12880189 58 1.60e-04 CTGATAACAC GTTTATCT GTTCAAGCCA chr9:127727097-127727177 22 1.60e-04 ggcagctggt gtttatct tttctgtcaa chr6:37465162-37465242 61 1.60e-04 tgcctgaaca gtttatct aaaaaacctg chr8:99318570-99318650 18 2.00e-04 CTATTTGTCC TGTTATCT GGATCCACAG chr20:39679418-39679498 20 2.00e-04 GATGCCAGTT TTTTATCA CTCAAGACCA chr12:60538332-60538412 8 2.00e-04 cattaag ttttatca tgatcagcat chr16:15615928-15616008 51 2.71e-04 GCAGGGGTGT GGTTATCT TCCTTTTACA chr7:127627055-127627135 28 2.71e-04 GTTAATATAT CTTTATCA GCAGGCAGCA chr2:84178567-84178647 53 2.71e-04 TGTCTCAGCA CGTTATCT GTAGCACACA chr7:5123101-5123181 33 2.71e-04 CATCCGGCAT GGTTATCT GCGCTTGCAA chr15:64731390-64731470 43 2.71e-04 AATGAGAACT GTTTATCA CAGAGCACAG chr2:178504423-178504503 20 2.91e-04 GGTCCACATC TGTTATCA TCTGGCTCAG chr1:207823471-207823551 62 3.25e-04 ggaggcagct ggttatca gtggtaatga chr6:123033612-123033692 40 3.25e-04 TAAGGCATTT GGTTATCA GGGGAGACCA chr1:95100703-95100783 22 3.25e-04 GGGAGCAGCT GGTTATCA TGAACCATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYTTATCW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:96105524-96105604 1.8e-05 5_[+2]_67 chr10:62022653-62022733 1.8e-05 59_[+2]_13 chr9:101338764-101338844 1.8e-05 38_[+2]_34 chr3:53384812-53384892 1.8e-05 21_[+2]_51 chr1:48643122-48643202 1.8e-05 43_[+2]_29 chr6:28188464-28188544 1.8e-05 58_[+2]_14 chr6:159920212-159920292 5e-05 19_[+2]_53 chr1:57684551-57684631 5e-05 24_[+2]_48 chr11:67116027-67116107 5e-05 64_[+2]_8 chr12:92798852-92798932 5e-05 20_[+2]_52 chr3:129180865-129180945 5e-05 24_[+2]_48 chr7:119566113-119566193 5e-05 9_[+2]_63 chr4:79405853-79405933 5e-05 15_[+2]_57 chr8:21818120-21818200 5e-05 12_[+2]_60 chr22:30348257-30348337 5e-05 6_[+2]_66 chr5:89954569-89954649 6.9e-05 [+2]_72 chr1:206266200-206266280 6.9e-05 26_[+2]_46 chr16:58894019-58894099 6.9e-05 5_[+2]_67 chr1:214176675-214176755 6.9e-05 18_[+2]_54 chr1:201123020-201123100 0.0001 31_[+2]_41 chr5:148018800-148018880 0.0001 52_[+2]_20 chr2:74311053-74311133 0.0001 16_[+2]_56 chr3:195805966-195806046 0.0001 43_[+2]_29 chr2:236982070-236982150 0.0001 3_[+2]_69 chr7:6096384-6096464 0.0001 27_[+2]_45 chrX:119468588-119468668 0.0001 36_[+2]_36 chrX:49963277-49963357 0.00012 19_[+2]_53 chr16:75077144-75077224 0.00012 68_[+2]_4 chr7:37397327-37397407 0.00012 5_[+2]_67 chr9:125016697-125016777 0.00012 58_[+2]_14 chr3:182655585-182655665 0.00016 66_[+2]_6 chr7:2913785-2913865 0.00016 25_[+2]_47 chr4:81174840-81174920 0.00016 13_[+2]_59 chr12:128801818-12880189 0.00016 57_[+2]_15 chr9:127727097-127727177 0.00016 21_[+2]_51 chr6:37465162-37465242 0.00016 60_[+2]_12 chr8:99318570-99318650 0.0002 17_[+2]_55 chr20:39679418-39679498 0.0002 19_[+2]_53 chr12:60538332-60538412 0.0002 7_[+2]_65 chr16:15615928-15616008 0.00027 50_[+2]_22 chr7:127627055-127627135 0.00027 27_[+2]_45 chr2:84178567-84178647 0.00027 52_[+2]_20 chr7:5123101-5123181 0.00027 32_[+2]_40 chr15:64731390-64731470 0.00027 42_[+2]_30 chr2:178504423-178504503 0.00029 19_[+2]_53 chr1:207823471-207823551 0.00032 61_[+2]_11 chr6:123033612-123033692 0.00032 39_[+2]_33 chr1:95100703-95100783 0.00032 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYTTATCW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BYTTATCW width=8 seqs=48 chr8:96105524-96105604 ( 6) TCTTATCT 1 chr10:62022653-62022733 ( 60) TCTTATCT 1 chr9:101338764-101338844 ( 39) TCTTATCT 1 chr3:53384812-53384892 ( 22) TCTTATCT 1 chr1:48643122-48643202 ( 44) TCTTATCT 1 chr6:28188464-28188544 ( 59) TCTTATCT 1 chr6:159920212-159920292 ( 20) CCTTATCT 1 chr1:57684551-57684631 ( 25) GCTTATCT 1 chr11:67116027-67116107 ( 65) CCTTATCT 1 chr12:92798852-92798932 ( 21) CCTTATCT 1 chr3:129180865-129180945 ( 25) CCTTATCT 1 chr7:119566113-119566193 ( 10) CCTTATCT 1 chr4:79405853-79405933 ( 16) CCTTATCT 1 chr8:21818120-21818200 ( 13) CCTTATCT 1 chr22:30348257-30348337 ( 7) GCTTATCT 1 chr5:89954569-89954649 ( 1) TCTTATCA 1 chr1:206266200-206266280 ( 27) TCTTATCA 1 chr16:58894019-58894099 ( 6) TCTTATCA 1 chr1:214176675-214176755 ( 19) TCTTATCA 1 chr1:201123020-201123100 ( 32) GCTTATCA 1 chr5:148018800-148018880 ( 53) CCTTATCA 1 chr2:74311053-74311133 ( 17) CCTTATCA 1 chr3:195805966-195806046 ( 44) GCTTATCA 1 chr2:236982070-236982150 ( 4) GCTTATCA 1 chr7:6096384-6096464 ( 28) CCTTATCA 1 chrX:119468588-119468668 ( 37) CCTTATCA 1 chrX:49963277-49963357 ( 20) TTTTATCT 1 chr16:75077144-75077224 ( 69) TTTTATCT 1 chr7:37397327-37397407 ( 6) TTTTATCT 1 chr9:125016697-125016777 ( 59) TTTTATCT 1 chr3:182655585-182655665 ( 67) GTTTATCT 1 chr7:2913785-2913865 ( 26) CTTTATCT 1 chr4:81174840-81174920 ( 14) CTTTATCT 1 chr12:128801818-12880189 ( 58) GTTTATCT 1 chr9:127727097-127727177 ( 22) GTTTATCT 1 chr6:37465162-37465242 ( 61) GTTTATCT 1 chr8:99318570-99318650 ( 18) TGTTATCT 1 chr20:39679418-39679498 ( 20) TTTTATCA 1 chr12:60538332-60538412 ( 8) TTTTATCA 1 chr16:15615928-15616008 ( 51) GGTTATCT 1 chr7:127627055-127627135 ( 28) CTTTATCA 1 chr2:84178567-84178647 ( 53) CGTTATCT 1 chr7:5123101-5123181 ( 33) GGTTATCT 1 chr15:64731390-64731470 ( 43) GTTTATCA 1 chr2:178504423-178504503 ( 20) TGTTATCA 1 chr1:207823471-207823551 ( 62) GGTTATCA 1 chr6:123033612-123033692 ( 40) GGTTATCA 1 chr1:95100703-95100783 ( 22) GGTTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYTTATCW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 1.2e-011 -1223 45 39 50 -1223 125 -52 14 -1223 -1223 -1223 191 -1223 -1223 -1223 191 190 -1223 -1223 -1223 -1223 -1223 -1223 191 -1223 213 -1223 -1223 56 -1223 -1223 119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYTTATCW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.2e-011 0.000000 0.312500 0.312500 0.375000 0.000000 0.541667 0.166667 0.291667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.395833 0.000000 0.000000 0.604167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYTTATCW MEME-2 regular expression -------------------------------------------------------------------------------- [TCG][CT]TTATC[TA] -------------------------------------------------------------------------------- Time 8.76 secs. ******************************************************************************** ******************************************************************************** MOTIF RCWGCWGB MEME-3 width = 8 sites = 38 llr = 310 E-value = 3.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCWGCWGB MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5:6::4:: pos.-specific C :a::a::4 probability G 5::a::a4 matrix T ::4::6:2 bits 2.1 * ** * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 ** **** (11.8 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGG consensus A T A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCWGB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:121904752-12190483 11 2.35e-05 ATGATATGAA GCAGCTGG CAGGGAAGAG chr5:148126512-148126592 51 2.35e-05 TAGCTACTTG GCAGCTGG GGAGTAAAGA chr1:179941157-179941237 27 2.35e-05 TCTGGTTTAT GCAGCTGG ATGACTGAGA chr9:127727097-127727177 13 2.35e-05 tgttgtactg gcagctgg tgtttatctt chr20:5469595-5469675 5 7.32e-05 tacg acagctgc ttccagaaga chr5:168240749-168240829 7 7.32e-05 CTCCAG ACAGCTGG ATTTAATTCA chr5:55606790-55606870 31 7.32e-05 TTGACAAAAA ACAGCTGC AGCCCTTCTT chr2:236982070-236982150 71 7.32e-05 agcttgcaaa acagctgG GG chr1:109677198-109677278 48 7.32e-05 TGCTCAGGCG GCTGCTGC ACCTGCTGCT chr4:81174840-81174920 37 7.32e-05 GGTCAGATGT GCTGCTGG AGAGGGATAA chr7:135718354-135718434 62 7.32e-05 TCAAGATAAG ACAGCTGC TCTACTCTAG chr6:31795516-31795596 17 7.32e-05 AGCCTGAGGA GCTGCTGC GAGGGTCCGC chr22:30348257-30348337 22 7.32e-05 TCTGTGCCCC ACAGCTGG CAGAGTAATG chr2:68220609-68220689 61 7.32e-05 CCCTTCTCAG ACAGCTGC AGTAACACTT chr8:125827833-125827913 69 7.32e-05 CGGGTGCTAG ACAGCTGC AGCT chr16:57716854-57716934 48 7.32e-05 GTTACACTAT GCTGCTGG GAAATGTCCA chr19:52011494-52011574 47 9.93e-05 CATCACCACC ACTGCTGG TAGCCCAGAT chr2:179134655-179134735 47 9.93e-05 TTGCTTTACT ACTGCTGC AGAATGTCAG chr3:105333306-105333386 51 9.93e-05 GTCAACAGCA ACTGCTGC TTGGAAAGAG chr15:35459069-35459149 21 1.36e-04 TCATTCTCAA GCAGCAGG GAAAAGGAGC chr4:109035775-109035855 67 1.36e-04 AATACTGTGA GCAGCAGC CAAAGA chr1:48643122-48643202 9 1.36e-04 tctgaagg gcagcagc ctgcagttta chr5:173615423-173615503 17 1.36e-04 ACAGATGAGG GCAGCTGT TCCTGGGACC chr15:39432310-39432390 18 2.15e-04 TGATAAGAGC ACAGCTGT GGGAAAGCCA chr9:100987551-100987631 62 2.15e-04 TGGGGCCAGT GCTGCAGG TATGGGGACA chr6:7900002-7900082 12 2.15e-04 CTGTCAAGGG GCTGCAGC CAGGCATGTA chr1:76251937-76252017 40 2.15e-04 TGAGTTTAGC GCTGCTGT CCGGATGGGT chr17:56409789-56409869 47 2.15e-04 CTTACCTGAG GCTGCAGG GCGGAGGAGA chr7:6096384-6096464 68 2.15e-04 TTGCATGTTT ACAGCAGG GACTT chr2:84178567-84178647 11 2.15e-04 TGCCTCTCTG ACAGCTGT CTCTCTCATC chr10:14227605-14227685 34 2.15e-04 TGGTCAGAGA GCTGCAGG GGCGGTTGTT chr20:37192564-37192644 6 2.15e-04 atacc acagcagc ctgaagagga chr6:152554063-152554143 11 2.15e-04 ctgggggcgc acagctgt tgcttaggag chr11:117997315-11799739 43 2.56e-04 GGCATGTGTC ACTGCAGC AAACAGGCGC chr7:102082186-102082266 10 2.98e-04 agagcacca gctgCAGT GGGAAGCAAG chr6:119863412-119863492 58 2.98e-04 AATGGTTATC GCTGCAGT CAGTGTTCCA chr7:37397327-37397407 32 2.98e-04 TCACATGTTT GCTGCAGT TTGGTTTAAG chr1:147735855-147735935 57 3.13e-04 ccgctgAGAT ACTGCAGT GCAAAACGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCWGB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:121904752-12190483 2.4e-05 10_[+3]_62 chr5:148126512-148126592 2.4e-05 50_[+3]_22 chr1:179941157-179941237 2.4e-05 26_[+3]_46 chr9:127727097-127727177 2.4e-05 12_[+3]_60 chr20:5469595-5469675 7.3e-05 4_[+3]_68 chr5:168240749-168240829 7.3e-05 6_[+3]_66 chr5:55606790-55606870 7.3e-05 30_[+3]_42 chr2:236982070-236982150 7.3e-05 70_[+3]_2 chr1:109677198-109677278 7.3e-05 47_[+3]_25 chr4:81174840-81174920 7.3e-05 36_[+3]_36 chr7:135718354-135718434 7.3e-05 61_[+3]_11 chr6:31795516-31795596 7.3e-05 16_[+3]_56 chr22:30348257-30348337 7.3e-05 21_[+3]_51 chr2:68220609-68220689 7.3e-05 60_[+3]_12 chr8:125827833-125827913 7.3e-05 68_[+3]_4 chr16:57716854-57716934 7.3e-05 47_[+3]_25 chr19:52011494-52011574 9.9e-05 46_[+3]_26 chr2:179134655-179134735 9.9e-05 46_[+3]_26 chr3:105333306-105333386 9.9e-05 50_[+3]_22 chr15:35459069-35459149 0.00014 20_[+3]_52 chr4:109035775-109035855 0.00014 66_[+3]_6 chr1:48643122-48643202 0.00014 8_[+3]_64 chr5:173615423-173615503 0.00014 16_[+3]_56 chr15:39432310-39432390 0.00021 17_[+3]_55 chr9:100987551-100987631 0.00021 61_[+3]_11 chr6:7900002-7900082 0.00021 11_[+3]_61 chr1:76251937-76252017 0.00021 39_[+3]_33 chr17:56409789-56409869 0.00021 46_[+3]_26 chr7:6096384-6096464 0.00021 67_[+3]_5 chr2:84178567-84178647 0.00021 10_[+3]_62 chr10:14227605-14227685 0.00021 33_[+3]_39 chr20:37192564-37192644 0.00021 5_[+3]_67 chr6:152554063-152554143 0.00021 10_[+3]_62 chr11:117997315-11799739 0.00026 42_[+3]_30 chr7:102082186-102082266 0.0003 9_[+3]_63 chr6:119863412-119863492 0.0003 57_[+3]_15 chr7:37397327-37397407 0.0003 31_[+3]_41 chr1:147735855-147735935 0.00031 56_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCWGB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCWGCWGB width=8 seqs=38 chr10:121904752-12190483 ( 11) GCAGCTGG 1 chr5:148126512-148126592 ( 51) GCAGCTGG 1 chr1:179941157-179941237 ( 27) GCAGCTGG 1 chr9:127727097-127727177 ( 13) GCAGCTGG 1 chr20:5469595-5469675 ( 5) ACAGCTGC 1 chr5:168240749-168240829 ( 7) ACAGCTGG 1 chr5:55606790-55606870 ( 31) ACAGCTGC 1 chr2:236982070-236982150 ( 71) ACAGCTGG 1 chr1:109677198-109677278 ( 48) GCTGCTGC 1 chr4:81174840-81174920 ( 37) GCTGCTGG 1 chr7:135718354-135718434 ( 62) ACAGCTGC 1 chr6:31795516-31795596 ( 17) GCTGCTGC 1 chr22:30348257-30348337 ( 22) ACAGCTGG 1 chr2:68220609-68220689 ( 61) ACAGCTGC 1 chr8:125827833-125827913 ( 69) ACAGCTGC 1 chr16:57716854-57716934 ( 48) GCTGCTGG 1 chr19:52011494-52011574 ( 47) ACTGCTGG 1 chr2:179134655-179134735 ( 47) ACTGCTGC 1 chr3:105333306-105333386 ( 51) ACTGCTGC 1 chr15:35459069-35459149 ( 21) GCAGCAGG 1 chr4:109035775-109035855 ( 67) GCAGCAGC 1 chr1:48643122-48643202 ( 9) GCAGCAGC 1 chr5:173615423-173615503 ( 17) GCAGCTGT 1 chr15:39432310-39432390 ( 18) ACAGCTGT 1 chr9:100987551-100987631 ( 62) GCTGCAGG 1 chr6:7900002-7900082 ( 12) GCTGCAGC 1 chr1:76251937-76252017 ( 40) GCTGCTGT 1 chr17:56409789-56409869 ( 47) GCTGCAGG 1 chr7:6096384-6096464 ( 68) ACAGCAGG 1 chr2:84178567-84178647 ( 11) ACAGCTGT 1 chr10:14227605-14227685 ( 34) GCTGCAGG 1 chr20:37192564-37192644 ( 6) ACAGCAGC 1 chr6:152554063-152554143 ( 11) ACAGCTGT 1 chr11:117997315-11799739 ( 43) ACTGCAGC 1 chr7:102082186-102082266 ( 10) GCTGCAGT 1 chr6:119863412-119863492 ( 58) GCTGCAGT 1 chr7:37397327-37397407 ( 32) GCTGCAGT 1 chr1:147735855-147735935 ( 57) ACTGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCWGB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 3.0e-002 82 -1189 114 -1189 -1189 213 -1189 -1189 105 -1189 -1189 75 -1189 -1189 207 -1189 -1189 213 -1189 -1189 46 -1189 -1189 125 -1189 -1189 207 -1189 -1189 69 73 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCWGB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 3.0e-002 0.473684 0.000000 0.526316 0.000000 0.000000 1.000000 0.000000 0.000000 0.552632 0.000000 0.000000 0.447368 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.368421 0.000000 0.000000 0.631579 0.000000 0.000000 1.000000 0.000000 0.000000 0.368421 0.394737 0.236842 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCWGCWGB MEME-3 regular expression -------------------------------------------------------------------------------- [GA]C[AT]GC[TA]G[GCT] -------------------------------------------------------------------------------- Time 12.40 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCTGTCC MEME-4 width = 8 sites = 8 llr = 84 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCTGTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::3 pos.-specific C ::a:::a8 probability G ::::a::: matrix T :a:a:a:: bits 2.1 * * * 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATCTGTCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:87645973-87646053 5 1.41e-05 GATT ATCTGTCC TGGCAATAAA chrX:55041577-55041657 3 1.41e-05 TC ATCTGTCC ATGACAAGGC chr2:64582037-64582117 10 1.41e-05 AAGTCTGTA ATCTGTCC CACCTTCAAC chr2:30884469-30884549 21 1.41e-05 GAGCCTTCTC ATCTGTCC ATGATTGGGC chr20:39679418-39679498 45 1.41e-05 CCAGCTTGTT ATCTGTCC TAGACAGAAG chr6:21102081-21102161 54 1.41e-05 tgttaatcag atctgtcc caccttctcc chr2:10533331-10533411 30 3.07e-05 TGTAATCTCT ATCTGTCA CTGGGAAGCT chr9:110556747-110556827 4 3.07e-05 TTA ATCTGTCA CTATCTGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:87645973-87646053 1.4e-05 4_[+4]_68 chrX:55041577-55041657 1.4e-05 2_[+4]_70 chr2:64582037-64582117 1.4e-05 9_[+4]_63 chr2:30884469-30884549 1.4e-05 20_[+4]_52 chr20:39679418-39679498 1.4e-05 44_[+4]_28 chr6:21102081-21102161 1.4e-05 53_[+4]_19 chr2:10533331-10533411 3.1e-05 29_[+4]_43 chr9:110556747-110556827 3.1e-05 3_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCTGTCC width=8 seqs=8 chr1:87645973-87646053 ( 5) ATCTGTCC 1 chrX:55041577-55041657 ( 3) ATCTGTCC 1 chr2:64582037-64582117 ( 10) ATCTGTCC 1 chr2:30884469-30884549 ( 21) ATCTGTCC 1 chr20:39679418-39679498 ( 45) ATCTGTCC 1 chr6:21102081-21102161 ( 54) ATCTGTCC 1 chr2:10533331-10533411 ( 30) ATCTGTCA 1 chr9:110556747-110556827 ( 4) ATCTGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 2.1e+004 190 -965 -965 -965 -965 -965 -965 191 -965 213 -965 -965 -965 -965 -965 191 -965 -965 207 -965 -965 -965 -965 191 -965 213 -965 -965 -10 171 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGTCC MEME-4 regular expression -------------------------------------------------------------------------------- ATCTGTC[CA] -------------------------------------------------------------------------------- Time 15.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGGCAG MEME-5 width = 8 sites = 13 llr = 127 E-value = 4.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGGCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:22a: pos.-specific C :8:::8:: probability G a2:a8::a matrix T :::::::: bits 2.1 * * * 1.9 * ** ** 1.7 * ** ** 1.5 * *** ** Relative 1.3 ******** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGGCAG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:65783718-65783798 69 1.22e-05 ACTTTATTCT GCAGGCAG TGGG chr5:168240749-168240829 47 1.22e-05 AGGCACTTGG GCAGGCAG AGCCCTCACA chr7:127627055-127627135 36 1.22e-05 ATCTTTATCA GCAGGCAG CACTGCACTG chr16:58894019-58894099 48 1.22e-05 GAAATGGGAA GCAGGCAG CCCTGTCTGG chrX:134996746-134996826 1 1.22e-05 . gcaggcag gtgtcatata chr1:207823471-207823551 52 2.50e-05 tacccagcta ggaggcag ctggttatca chr14:51135337-51135417 30 2.50e-05 GATCCCTAGC GGAGGCAG TGACTCTCTT chr6:15211626-15211706 57 2.50e-05 cttgaaccca ggaggcag aggttgcagt chr10:17045281-17045361 1 3.93e-05 . GCAGGAAG CGACACTGTG chr2:74311053-74311133 72 3.93e-05 AGCCTAATCT GCAGGAAG C chr22:29548752-29548832 69 3.93e-05 ctggcttgaa gcaggaag gaac chr1:76251937-76252017 63 5.29e-05 TGGGTTGGTA GCAGACAG GGTGGAGTAG chr1:214176675-214176755 37 5.29e-05 CAAGGCAGTC GCAGACAG CTTGCAACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:65783718-65783798 1.2e-05 68_[+5]_4 chr5:168240749-168240829 1.2e-05 46_[+5]_26 chr7:127627055-127627135 1.2e-05 35_[+5]_37 chr16:58894019-58894099 1.2e-05 47_[+5]_25 chrX:134996746-134996826 1.2e-05 [+5]_72 chr1:207823471-207823551 2.5e-05 51_[+5]_21 chr14:51135337-51135417 2.5e-05 29_[+5]_43 chr6:15211626-15211706 2.5e-05 56_[+5]_16 chr10:17045281-17045361 3.9e-05 [+5]_72 chr2:74311053-74311133 3.9e-05 71_[+5]_1 chr22:29548752-29548832 3.9e-05 68_[+5]_4 chr1:76251937-76252017 5.3e-05 62_[+5]_10 chr1:214176675-214176755 5.3e-05 36_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGGCAG width=8 seqs=13 chr1:65783718-65783798 ( 69) GCAGGCAG 1 chr5:168240749-168240829 ( 47) GCAGGCAG 1 chr7:127627055-127627135 ( 36) GCAGGCAG 1 chr16:58894019-58894099 ( 48) GCAGGCAG 1 chrX:134996746-134996826 ( 1) GCAGGCAG 1 chr1:207823471-207823551 ( 52) GGAGGCAG 1 chr14:51135337-51135417 ( 30) GGAGGCAG 1 chr6:15211626-15211706 ( 57) GGAGGCAG 1 chr10:17045281-17045361 ( 1) GCAGGAAG 1 chr2:74311053-74311133 ( 72) GCAGGAAG 1 chr22:29548752-29548832 ( 69) GCAGGAAG 1 chr1:76251937-76252017 ( 63) GCAGACAG 1 chr1:214176675-214176755 ( 37) GCAGACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 4.7e+003 -1035 -1035 207 -1035 -1035 175 -5 -1035 190 -1035 -1035 -1035 -1035 -1035 207 -1035 -80 -1035 183 -1035 -21 175 -1035 -1035 190 -1035 -1035 -1035 -1035 -1035 207 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.769231 0.230769 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.153846 0.000000 0.846154 0.000000 0.230769 0.769231 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAG MEME-5 regular expression -------------------------------------------------------------------------------- G[CG]AGG[CA]AG -------------------------------------------------------------------------------- Time 19.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:207779266-207779346 5.42e-02 80 chr2:108972844-108972924 7.63e-01 80 chr3:129118878-129118958 4.67e-01 80 chr14:23120363-23120443 2.85e-01 80 chr16:57716854-57716934 1.65e-02 47_[+3(7.32e-05)]_25 chr3:13044180-13044260 4.40e-01 80 chr15:75052815-75052895 4.24e-01 80 chr5:77075000-77075080 2.45e-01 80 chr11:120107410-12010749 1.41e-01 80 chr11:117997315-11799739 3.29e-02 80 chr15:45019347-45019427 1.06e-01 80 chr17:10694318-10694398 6.08e-01 80 chr8:125827833-125827913 7.37e-02 68_[+3(7.32e-05)]_4 chr6:28188464-28188544 1.61e-02 58_[+2(1.82e-05)]_14 chr10:23344666-23344746 5.95e-01 80 chr2:30884261-30884341 4.47e-01 80 chr1:234740786-234740866 1.20e-01 80 chr1:95100703-95100783 3.75e-04 15_[+3(2.35e-05)]_57 chrX:153191272-153191352 4.26e-02 80 chr2:145116815-145116895 4.65e-01 80 chr3:16977899-16977979 2.91e-01 80 chr17:56743917-56743997 5.70e-01 80 chr1:210547455-210547535 5.05e-01 80 chr6:15211425-15211505 3.51e-01 80 chr5:173615423-173615503 7.43e-03 80 chr12:65114767-65114847 9.18e-03 80 chr8:117614911-117614991 4.62e-01 80 chr6:15211626-15211706 1.08e-01 56_[+5(2.50e-05)]_16 chr2:68666102-68666182 4.62e-01 80 chr3:112360021-112360101 4.74e-01 80 chr17:41393333-41393413 2.79e-01 80 chr6:37465162-37465242 2.30e-01 80 chr11:61266664-61266744 7.12e-01 80 chr19:5309104-5309184 6.26e-03 55_[+5(6.79e-05)]_17 chr2:217957625-217957705 5.82e-02 80 chr7:24903971-24904051 1.00e-01 66_[+1(7.50e-05)]_6 chr6:150881285-150881365 8.84e-01 80 chr5:111885597-111885677 1.97e-01 80 chr1:149215135-149215215 2.74e-01 80 chr5:95220357-95220437 1.87e-02 80 chr4:25052516-25052596 5.60e-03 23_[+1(1.78e-05)]_49 chr20:35783244-35783324 7.18e-03 72_[+1(1.78e-05)] chr4:185115175-185115255 7.99e-01 80 chr7:132174719-132174799 4.72e-01 80 chr7:117581673-117581753 6.70e-01 80 chr1:48643122-48643202 3.94e-04 43_[+2(1.82e-05)]_29 chr6:70320070-70320150 6.10e-01 80 chr1:147735855-147735935 2.73e-01 80 chr14:51135337-51135417 6.38e-02 29_[+5(2.50e-05)]_43 chrX:107801626-107801706 3.23e-02 25_[+1(7.50e-05)]_47 chr9:101836650-101836730 2.60e-01 80 chr19:13694039-13694119 3.04e-01 80 chr2:158108531-158108611 3.13e-01 80 chr21:46493752-46493832 3.92e-01 80 chr6:152554063-152554143 1.51e-02 80 chr10:63540229-63540309 1.36e-01 80 chr20:52369752-52369832 2.23e-01 80 chr4:160116695-160116775 3.47e-01 80 chr10:127293913-12729399 3.87e-01 80 chr9:125016697-125016777 1.31e-02 80 chrX:119468588-119468668 2.04e-03 7_[+1(7.50e-05)]_65 chr20:37192564-37192644 1.59e-02 80 chr4:151695355-151695435 1.11e-01 80 chr15:64731390-64731470 4.61e-02 80 chr9:130188240-130188320 1.14e-01 80 chr17:57779886-57779966 4.95e-01 80 chr9:110556747-110556827 1.22e-03 3_[+4(3.07e-05)]_69 chr2:42423651-42423731 1.24e-02 80 chr10:16933963-16934043 5.78e-01 80 chr12:60538332-60538412 1.60e-03 53_[+1(3.65e-05)]_19 chr2:68220609-68220689 1.36e-03 60_[+3(7.32e-05)]_12 chr17:41445352-41445432 9.59e-01 80 chr6:21102081-21102161 5.54e-03 53_[+4(1.41e-05)]_19 chr17:33212286-33212366 1.58e-02 61_[+1(3.65e-05)]_11 chr22:30348257-30348337 1.38e-05 6_[+2(5.03e-05)]_7_[+3(7.32e-05)]_\ 51 chr11:121097350-12109743 3.61e-01 80 chr6:28688331-28688411 9.94e-01 80 chr1:26087563-26087643 9.27e-02 80 chr20:39679418-39679498 1.58e-03 44_[+4(1.41e-05)]_28 chr5:158555194-158555274 3.19e-01 80 chr16:9085946-9086026 4.34e-01 80 chrX:16789804-16789884 2.09e-01 80 chr3:156178180-156178260 6.42e-01 80 chr4:38324908-38324988 4.92e-01 80 chr1:214176675-214176755 3.71e-03 18_[+2(6.87e-05)]_10_[+5(5.29e-05)]_\ 36 chr7:5123101-5123181 1.56e-02 80 chrX:134996746-134996826 1.03e-02 [+5(1.22e-05)]_72 chr6:74238822-74238902 2.19e-01 80 chr1:156430456-156430536 3.07e-01 80 chr22:29548752-29548832 1.10e-01 68_[+5(3.93e-05)]_4 chr5:131987926-131988006 7.60e-02 46_[+1(5.74e-05)]_26 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chr10:17045281-17045361 1.51e-02 [+5(3.93e-05)]_72 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n10.farnam.hpc.yale.internal ********************************************************************************