******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PKNOX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:1611056-1611136 1.0000 80 chr21:43779190-43779270 1.0000 80 chr1:21934452-21934532 1.0000 80 chr16:89238013-89238093 1.0000 80 chr2:206809486-206809566 1.0000 80 chr1:155057872-155057952 1.0000 80 chr1:27677779-27677859 1.0000 80 chr6:154914304-154914384 1.0000 80 chr16:85767442-85767522 1.0000 80 chr14:37130940-37131020 1.0000 80 chr19:17727892-17727972 1.0000 80 chr2:10611541-10611621 1.0000 80 chr19:19143326-19143406 1.0000 80 chr10:104261944-10426202 1.0000 80 chr17:44302779-44302859 1.0000 80 chr17:43697597-43697677 1.0000 80 chr4:102268834-102268914 1.0000 80 chr16:30032657-30032737 1.0000 80 chr2:136288841-136288921 1.0000 80 chr19:7670659-7670739 1.0000 80 chr19:11998488-11998568 1.0000 80 chrX:49031154-49031234 1.0000 80 chr1:220078425-220078505 1.0000 80 chr19:55791869-55791949 1.0000 80 chr1:145476956-145477036 1.0000 80 chr21:43884136-43884216 1.0000 80 chr4:603373-603453 1.0000 80 chr5:159780444-159780524 1.0000 80 chr11:20097344-20097424 1.0000 80 chr1:226714604-226714684 1.0000 80 chr18:32906803-32906883 1.0000 80 chr22:25631996-25632076 1.0000 80 chr19:12551914-12551994 1.0000 80 chr3:142686589-142686669 1.0000 80 chr14:64971961-64972041 1.0000 80 chr14:100913047-10091312 1.0000 80 chr19:156967-157047 1.0000 80 chr11:118799340-11879942 1.0000 80 chr20:44827905-44827985 1.0000 80 chr19:12512064-12512144 1.0000 80 chr11:16394095-16394175 1.0000 80 chr19:7739379-7739459 1.0000 80 chr22:36784250-36784330 1.0000 80 chr1:25757212-25757292 1.0000 80 chr7:14029378-14029458 1.0000 80 chr4:124206-124286 1.0000 80 chr20:40247085-40247165 1.0000 80 chr1:164528084-164528164 1.0000 80 chr12:122502859-12250293 1.0000 80 chr15:75135016-75135096 1.0000 80 chr10:102790933-10279101 1.0000 80 chr14:24740352-24740432 1.0000 80 chr18:74204962-74205042 1.0000 80 chr4:124317834-124317914 1.0000 80 chr6:109330819-109330899 1.0000 80 chr3:195872143-195872223 1.0000 80 chrX:68776366-68776446 1.0000 80 chr19:47220353-47220433 1.0000 80 chr20:45035302-45035382 1.0000 80 chr4:48782429-48782509 1.0000 80 chr7:72298984-72299064 1.0000 80 chr3:107241705-107241785 1.0000 80 chr6:159527906-159527986 1.0000 80 chr22:38054418-38054498 1.0000 80 chr1:167691108-167691188 1.0000 80 chr8:26240824-26240904 1.0000 80 chr14:73925447-73925527 1.0000 80 chr22:37582451-37582531 1.0000 80 chr7:103628039-103628119 1.0000 80 chr19:3275050-3275130 1.0000 80 chr10:42863534-42863614 1.0000 80 chr5:171847682-171847762 1.0000 80 chr10:102802586-10280266 1.0000 80 chr8:25315996-25316076 1.0000 80 chr19:36193316-36193396 1.0000 80 chr17:45177682-45177762 1.0000 80 chr4:175204362-175204442 1.0000 80 chr6:32143906-32143986 1.0000 80 chrX:46988608-46988688 1.0000 80 chr19:4867696-4867776 1.0000 80 chr8:125364271-125364351 1.0000 80 chr8:145159231-145159311 1.0000 80 chr2:43864317-43864397 1.0000 80 chr8:71314403-71314483 1.0000 80 chr20:52551020-52551100 1.0000 80 chr3:194489993-194490073 1.0000 80 chr6:144600799-144600879 1.0000 80 chr19:45873901-45873981 1.0000 80 chr2:74685356-74685436 1.0000 80 chr12:27676944-27677024 1.0000 80 chr7:25894833-25894913 1.0000 80 chr19:2375512-2375592 1.0000 80 chr16:11332592-11332672 1.0000 80 chr19:18315067-18315147 1.0000 80 chr1:153581830-153581910 1.0000 80 chr19:8408168-8408248 1.0000 80 chr19:15563077-15563157 1.0000 80 chr17:21837399-21837479 1.0000 80 chr22:37997712-37997792 1.0000 80 chr1:24743448-24743528 1.0000 80 chr22:39101550-39101630 1.0000 80 chr19:13906040-13906120 1.0000 80 chr19:54975242-54975322 1.0000 80 chr1:112938736-112938816 1.0000 80 chr17:58679435-58679515 1.0000 80 chrX:80377218-80377298 1.0000 80 chr3:114866793-114866873 1.0000 80 chr6:132834289-132834369 1.0000 80 chr1:17446009-17446089 1.0000 80 chr2:88316472-88316552 1.0000 80 chr9:104295756-104295836 1.0000 80 chr6:11805600-11805680 1.0000 80 chr3:114866147-114866227 1.0000 80 chr11:47935611-47935691 1.0000 80 chr10:80166872-80166952 1.0000 80 chr17:14204285-14204365 1.0000 80 chr14:89882512-89882592 1.0000 80 chr18:14132542-14132622 1.0000 80 chr1:24742195-24742275 1.0000 80 chr1:16115336-16115416 1.0000 80 chr17:18086668-18086748 1.0000 80 chr18:48405377-48405457 1.0000 80 chr7:158750740-158750820 1.0000 80 chr19:12595661-12595741 1.0000 80 chr19:4153508-4153588 1.0000 80 chr3:101497964-101498044 1.0000 80 chr1:120838374-120838454 1.0000 80 chr2:191533780-191533860 1.0000 80 chr1:247171450-247171530 1.0000 80 chr1:31231782-31231862 1.0000 80 chr5:134361061-134361141 1.0000 80 chr16:90143808-90143888 1.0000 80 chr4:13546648-13546728 1.0000 80 chr9:119449504-119449584 1.0000 80 chr1:41174585-41174665 1.0000 80 chr17:8534208-8534288 1.0000 80 chr14:104328939-10432901 1.0000 80 chr2:219824225-219824305 1.0000 80 chr13:20532724-20532804 1.0000 80 chr18:71959315-71959395 1.0000 80 chr4:184580368-184580448 1.0000 80 chr11:93060011-93060091 1.0000 80 chr17:39943116-39943196 1.0000 80 chr7:66461552-66461632 1.0000 80 chr2:44395572-44395652 1.0000 80 chr1:200379228-200379308 1.0000 80 chr17:42589308-42589388 1.0000 80 chr2:62932665-62932745 1.0000 80 chr6:112194688-112194768 1.0000 80 chr16:46782294-46782374 1.0000 80 chr17:37321224-37321304 1.0000 80 chr13:44716187-44716267 1.0000 80 chr19:14640048-14640128 1.0000 80 chr2:103251946-103252026 1.0000 80 chr19:11849827-11849907 1.0000 80 chr19:23433294-23433374 1.0000 80 chr19:12444530-12444610 1.0000 80 chr3:9885703-9885783 1.0000 80 chr16:53537374-53537454 1.0000 80 chr10:45474269-45474349 1.0000 80 chrX:152736035-152736115 1.0000 80 chr11:32197943-32198023 1.0000 80 chr1:153895578-153895658 1.0000 80 chr21:47604561-47604641 1.0000 80 chr17:80433436-80433516 1.0000 80 chr4:52709064-52709144 1.0000 80 chr17:17566735-17566815 1.0000 80 chr20:56596713-56596793 1.0000 80 chr6:157950432-157950512 1.0000 80 chr16:639785-639865 1.0000 80 chr5:96144093-96144173 1.0000 80 chr11:107798898-10779897 1.0000 80 chr17:74667864-74667944 1.0000 80 chr2:25194594-25194674 1.0000 80 chr16:22385992-22386072 1.0000 80 chr6:79943677-79943757 1.0000 80 chr19:19174526-19174606 1.0000 80 chrX:47420473-47420553 1.0000 80 chr19:12476541-12476621 1.0000 80 chr21:44394702-44394782 1.0000 80 chr19:55973274-55973354 1.0000 80 chr19:41221029-41221109 1.0000 80 chr4:110657059-110657139 1.0000 80 chr6:36165069-36165149 1.0000 80 chr15:33487008-33487088 1.0000 80 chr11:11643590-11643670 1.0000 80 chr20:56036303-56036383 1.0000 80 chr11:63953366-63953446 1.0000 80 chr10:104263591-10426367 1.0000 80 chr17:71358989-71359069 1.0000 80 chr2:198669212-198669292 1.0000 80 chr6:32146089-32146169 1.0000 80 chr15:70392054-70392134 1.0000 80 chr14:23790473-23790553 1.0000 80 chr19:1041069-1041149 1.0000 80 chr16:67926982-67927062 1.0000 80 chr1:151254603-151254683 1.0000 80 chr16:84538266-84538346 1.0000 80 chr7:97761401-97761481 1.0000 80 chr12:56123476-56123556 1.0000 80 chr19:45409814-45409894 1.0000 80 chr9:34989523-34989603 1.0000 80 chr21:34494557-34494637 1.0000 80 chr10:5522664-5522744 1.0000 80 chr16:66914335-66914415 1.0000 80 chr7:150521628-150521708 1.0000 80 chr6:142330935-142331015 1.0000 80 chr2:73298488-73298568 1.0000 80 chr7:131769808-131769888 1.0000 80 chr11:64008961-64009041 1.0000 80 chrX:47931262-47931342 1.0000 80 chr16:22682043-22682123 1.0000 80 chr17:18163851-18163931 1.0000 80 chr1:156549361-156549441 1.0000 80 chr3:141726713-141726793 1.0000 80 chr17:21187840-21187920 1.0000 80 chr22:29999282-29999362 1.0000 80 chr19:33166111-33166191 1.0000 80 chr7:73017866-73017946 1.0000 80 chr2:128284949-128285029 1.0000 80 chr3:88108222-88108302 1.0000 80 chr20:25524359-25524439 1.0000 80 chr12:53473217-53473297 1.0000 80 chr16:15116137-15116217 1.0000 80 chr11:58825959-58826039 1.0000 80 chr19:50706757-50706837 1.0000 80 chr4:87973934-87974014 1.0000 80 chr12:8179275-8179355 1.0000 80 chr11:44921660-44921740 1.0000 80 chr18:29673636-29673716 1.0000 80 chr12:131613774-13161385 1.0000 80 chr7:99798001-99798081 1.0000 80 chr8:125121546-125121626 1.0000 80 chr19:24097498-24097578 1.0000 80 chr16:70052370-70052450 1.0000 80 chr19:8590434-8590514 1.0000 80 chr1:150601643-150601723 1.0000 80 chr15:37393907-37393987 1.0000 80 chr20:60813317-60813397 1.0000 80 chr22:40440279-40440359 1.0000 80 chr13:20437855-20437935 1.0000 80 chr12:120315155-12031523 1.0000 80 chr3:138921299-138921379 1.0000 80 chr3:185826983-185827063 1.0000 80 chrX:47077316-47077396 1.0000 80 chr15:44487543-44487623 1.0000 80 chr16:8964779-8964859 1.0000 80 chr12:57848951-57849031 1.0000 80 chr3:100211298-100211378 1.0000 80 chr9:135448445-135448525 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PKNOX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PKNOX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.21 C 0.294 G 0.291 T 0.206 Background letter frequencies (from file dataset with add-one prior applied): A 0.21 C 0.294 G 0.291 T 0.206 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGAKTGRC MEME-1 width = 8 sites = 155 llr = 1177 E-value = 3.1e-128 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a:1:6: pos.-specific C :1:2:::9 probability G 19:31a4: matrix T 8::58::1 bits 2.3 * 2.1 * 1.8 * * 1.6 * * * Relative 1.4 *** ** * Entropy 1.1 *** **** (11.0 bits) 0.9 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGATTGAC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:87973934-87974014 50 9.60e-06 tagggctctg tgattgac aggagatagg chr7:73017866-73017946 35 9.60e-06 CTCCACCTCT TGATTGAC AGGCCCAGGA chr16:22682043-22682123 39 9.60e-06 gagagcctct tgattgac agtcccaccc chr19:45409814-45409894 20 9.60e-06 CACTGGCGGT TGATTGAC AGTTTCTCCT chr20:56036303-56036383 36 9.60e-06 TCTGACCTCT TGATTGAC TTGCACTTTG chr19:12476541-12476621 52 9.60e-06 CCCAGGGAAC TGATTGAC AGAAGAAGGA chr6:79943677-79943757 10 9.60e-06 CCCCAGCCC TGATTGAC ACTGGAGTTG chr6:157950432-157950512 35 9.60e-06 GTGTCAAGCT TGATTGAC AGGGCCCCTG chr19:11849827-11849907 67 9.60e-06 CCTTGGTGGC TGATTGAC AGAAGA chr2:44395572-44395652 49 9.60e-06 GGGCGTTATT TGATTGAC GGAGGGCTCT chr11:93060011-93060091 30 9.60e-06 CTGATAGTGA TGATTGAC AGGCCTAGCA chr17:18086668-18086748 22 9.60e-06 GGAGACTGCC TGATTGAC ACGCATGATT chr10:80166872-80166952 36 9.60e-06 AGAGGAGCGG TGATTGAC ACACCTAGAG chr17:58679435-58679515 32 9.60e-06 AAGAGTTAGT TGATTGAC TCAAAAACCA chr19:13906040-13906120 8 9.60e-06 CGCCCCG TGATTGAC AGCGCCCCTC chr1:24743448-24743528 32 9.60e-06 ACCACTCCCT TGATTGAC ATGTCGCTAA chr16:11332592-11332672 36 9.60e-06 cagggtgctg tgattgac agctccttca chr6:144600799-144600879 15 9.60e-06 ccaggctcag tgattgac agtcccacaa chr3:195872143-195872223 57 9.60e-06 CGCCTGGCTC TGATTGAC AGGCACACAC chr4:124317834-124317914 41 9.60e-06 GCAGCCCGAG TGATTGAC ACATGATATC chr12:122502859-12250293 35 9.60e-06 CTTCCCCAAG TGATTGAC ACTGGAGTCA chr1:164528084-164528164 35 9.60e-06 CTCTGAACTC TGATTGAC AGGGCGCCGG chr19:12512064-12512144 14 9.60e-06 GAAGCGCGCC TGATTGAC AGTTCCCACG chr14:64971961-64972041 42 9.60e-06 AGAACCCGGT TGATTGAC GTGCCTAGAG chr19:12551914-12551994 1 9.60e-06 . TGATTGAC AGTTCCCACG chr1:226714604-226714684 24 9.60e-06 GTGCTCTCGT TGATTGAC AGCTGCACTG chr4:603373-603453 19 9.60e-06 ACAAGGAAGA TGATTGAC ACATGGAAGA chr8:125121546-125121626 28 2.29e-05 gctttccagt tgattggc accatcttat chr18:29673636-29673716 49 2.29e-05 CGCATGCGTT TGATTGGC AGGCATATTT chr19:50706757-50706837 20 2.29e-05 CCGCTCTTTT TGATTGGC GGCTCCCGTC chr3:88108222-88108302 49 2.29e-05 GGCATGAACA TGATTGGC AGCTTGCGTC chr16:67926982-67927062 51 2.29e-05 CCGAAGAGGT TGATTGGC AGGCCACGCT chr15:70392054-70392134 19 2.29e-05 TCTTCGTTGC TGATTGGC GGAGCTGCTG chr1:153895578-153895658 40 2.29e-05 GGAGAAGTGA TGATTGGC GTGCTTAAAA chr19:2375512-2375592 51 2.29e-05 GTGGGAACTG TGATTGGC AGGCCAGGGT chr7:25894833-25894913 40 2.29e-05 TACTTTGACG TGATTGGC TTCTACTGTA chr5:171847682-171847762 48 2.29e-05 TCACTCATAT TGATTGGC GTCGAGTTGA chr7:72298984-72299064 48 2.29e-05 CAGAGAGAAA TGATTGGC ATGGGAAAAT chr21:43884136-43884216 10 2.29e-05 ggctgcatt tgattggc caaaactcag chr1:145476956-145477036 46 2.29e-05 CCATCACTGG TGATTGGC ATGGGACCTA chr1:150601643-150601723 57 3.65e-05 AGTACAGTAC TGAGTGAC AAACGACCCA chr12:131613774-13161385 30 3.65e-05 TGTCTGGGTG TGAGTGAC AGGCCGGCCC chr10:5522664-5522744 43 3.65e-05 TGGCAGGTCA TGAGTGAC AGCCCCAAGG chr11:32197943-32198023 27 3.65e-05 GTTTTTTCCT TGAGTGAC AGCCAGAGTC chr19:12444530-12444610 67 3.65e-05 CCCTGGGCAC TGAGTGAC AGAAGA chr16:46782294-46782374 31 3.65e-05 CACGGGCCTG TGAGTGAC AGGCCGAGGT chr4:13546648-13546728 49 3.65e-05 TCCTCACTGC TGAGTGAC AGCCTGAGGC chr1:247171450-247171530 24 3.65e-05 CCTCAGGTCT TGAGTGAC AGGAGGTGCG chr19:12595661-12595741 44 3.65e-05 CTTCGTTGCC TGAGTGAC AGCTAGTAGG chr6:132834289-132834369 31 3.65e-05 CCCGCGGGGC TGAGTGAC AGCGGCCCTC chr12:27676944-27677024 24 3.65e-05 TGGACTCCTC TGAGTGAC GTTCCCCGGC chr10:42863534-42863614 18 3.65e-05 CCCCAGTCCG TGAGTGAC AGAAGATGTG chr19:3275050-3275130 31 3.65e-05 CCCACCCCCA TGAGTGAC AGCTGCCGAG chr11:16394095-16394175 38 3.65e-05 TAAGCCCAGT TGAGTGAC AGCTATAATA chr1:220078425-220078505 36 3.65e-05 ctggataaaa tgagtgac agcagcctca chr1:27677779-27677859 50 3.65e-05 GCTCCGAGGG TGAGTGAC AGCCGGAGAG chr1:155057872-155057952 10 3.65e-05 CTACATCTG TGAGTGAC GGCGGCCGGG chr2:206809486-206809566 35 3.65e-05 TCACTCACCC TGAGTGAC ACGGTGAAGC chr6:142330935-142331015 49 5.02e-05 agataagctt tgactgac aaccagcaag chr21:34494557-34494637 34 5.02e-05 GGGCAGGCCA TGACTGAC ACCTCTAGCA chr17:17566735-17566815 50 5.02e-05 CAGACCTTGA TGACTGAC AGCCCAGGAC chr4:52709064-52709144 7 5.02e-05 TGGGGG TGACTGAC AGCAGCCGGG chr2:191533780-191533860 41 5.02e-05 ggccaccaag tgactgac agccaggagt chr11:47935611-47935691 37 5.02e-05 TGGCCAGTGA TGACTGAC AGGTCTAGAG chr8:26240824-26240904 50 5.02e-05 GATGTCCAGG TGACTGAC AGCTCCCGTC chr20:44827905-44827985 49 5.02e-05 CCGTGGGCTT TGACTGAC AGGGCTGCCT chr5:159780444-159780524 35 5.02e-05 tcagtcacaa tgactgac tgcccccacc chr16:15116137-15116217 38 6.89e-05 ctgcaggtga tgagtggc agcactgTGC chr11:64008961-64009041 47 6.89e-05 CTTCAGCCGG TGAGTGGC GTGGCTACGG chr19:55973274-55973354 57 6.89e-05 GTAGAGGGCG TGAGTGGC GGCCGACGGG chr2:25194594-25194674 15 6.89e-05 CCCAGGCTGT TGAGTGGC CGCCCTTCCA chr6:11805600-11805680 51 6.89e-05 CAGGCTTTGC TGAGTGGC AGGGGGAGCA chr2:88316472-88316552 50 6.89e-05 CTAATAAGAA TGAGTGGC AGGGACAGGG chr17:21837399-21837479 17 6.89e-05 ATTGTGGCTT TGAGTGGC AGGTGGGCGG chr8:145159231-145159311 70 6.89e-05 AAGGCAGAAC TGAGTGGC GGG chr19:19143326-19143406 30 6.89e-05 CTCTTGACAG TGAGTGGC GGGACCCCCA chr20:60813317-60813397 38 8.79e-05 TCTCCTGCTG TGACTGGC TGTCCTTGCC chr6:32146089-32146169 52 8.79e-05 GAATTCTTTG TGACTGGC AGGCATTCAG chr10:104263591-10426367 44 8.79e-05 TCCCTGCCTG TGACTGGC ACAGACATTA chr19:41221029-41221109 42 8.79e-05 AGCAACTCGC TGACTGGC ACGGAGTTTC chr1:24742195-24742275 25 8.79e-05 TGCCAACTTC TGACTGGC AGGCAGTCTG chr12:120315155-12031523 21 1.07e-04 TCCGCTCCTA TGATAGAC ATGGGCGTCT chr12:56123476-56123556 67 1.31e-04 CTCTGGGGGA GGATTGAC AAGGTC chr9:104295756-104295836 16 1.31e-04 ATGTCCCCGG AGATTGAC GGGACCGTCA chr19:8590434-8590514 36 1.47e-04 GTCAGGGAGT TGAATGAC AGACAGACCA chr20:25524359-25524439 52 1.47e-04 cttcagcctc tgattgat gttgaaagca chr17:42589308-42589388 35 1.47e-04 gtgggctatg tgaatgac atgcctagtc chr3:194489993-194490073 29 1.47e-04 CCCTTCTGGA TGATTGAT TTCTAAGCAG chr8:125364271-125364351 9 1.47e-04 gtgtgaac tgaatgac agacatatag chr1:167691108-167691188 16 1.61e-04 GGCGGACGGA TGATGGAC AGCCTGACTC chr7:150521628-150521708 20 1.74e-04 AGCTCCCTCA TCATTGGC TTTTAGAGAG chr17:8534208-8534288 43 1.74e-04 GGAATGACGC TCATTGGC TCCCGCTCCC chr17:45177682-45177762 3 1.74e-04 GC TCATTGGC CCTTCAGGGG chr11:118799340-11879942 24 1.74e-04 GTGACTTCAA TCATTGGC TCAGGGCACT chr4:102268834-102268914 5 1.74e-04 GCGT TCATTGGC TAGAGGGCGC chr10:104261944-10426202 58 1.74e-04 AGAGGCGGTA TCATTGGC TAAGATGGAC chr20:56596713-56596793 29 1.88e-04 CAAGGCAGAA TGATAGGC AGGGGCCGGG chr14:73925447-73925527 42 1.88e-04 TTCGAAGTTA TGATAGGC TGCTAAAAGT chr21:44394702-44394782 59 2.20e-04 AGTGTGATGA AGATTGGC ACCCAGGTAA chr17:74667864-74667944 63 2.20e-04 GCTTCGCGGC AGATTGGC AGGTGCTTGA chr18:74204962-74205042 28 2.20e-04 AAGCCGCTGC GGATTGGC CAGCAGAGCC chr1:25757212-25757292 62 2.20e-04 GCGGGCCCTG GGATTGGC CGACAGCGGT chr3:9885703-9885783 36 2.57e-04 GCCAGCGCGC TGATTGGT CAGCTGGAGT chr17:37321224-37321304 36 2.57e-04 AGAGCTCCAG TGATTGGT CCCCCTGCCT chr9:119449504-119449584 34 2.57e-04 GAGGCGGGGC TCAGTGAC GGACAGGGAG chr6:159527906-159527986 21 2.57e-04 cttcagcctc tgattggt tgggggccca chr12:57848951-57849031 33 2.89e-04 TGCAGGGGCC TGATGGGC AGCACAGCTG chr15:44487543-44487623 55 2.89e-04 AGTACTGGGA TGATGGGC GGGATAAAGA chr21:47604561-47604641 57 2.89e-04 TCCAGCCCTG TGATGGGC ACCCACCACC chr2:62932665-62932745 51 2.89e-04 GGAGCCCCTG TGATGGGC AGGCAGTTCT chr6:32143906-32143986 20 2.89e-04 TGGAGGGCGG TGATGGGC AGCCTGTTTT chr22:40440279-40440359 17 3.22e-04 ATTTGACTGG GGAGTGAC ATCCTGACAG chr19:33166111-33166191 48 3.22e-04 GTCGTTTCCC AGAGTGAC GTGTACGCAG chr22:29999282-29999362 17 3.22e-04 AAAAGCATTC AGAGTGAC TGCCACTGTA chr2:73298488-73298568 19 3.22e-04 GGGCAGTCGG GGAGTGAC GGCGCCAAGG chr19:23433294-23433374 58 3.22e-04 GAATGAAGAA AGAGTGAC AGCCTAAGCT chr6:112194688-112194768 16 3.22e-04 GCGCGCCTCG AGAGTGAC AGGCCCGGCT chr18:14132542-14132622 52 3.22e-04 GAATGAGCCG AGAGTGAC AGGCTCTTGG chrX:80377218-80377298 49 3.22e-04 GAGCCACATT GGAGTGAC AGGCTCTCAG chr19:4867696-4867776 37 3.22e-04 GGGGCGCACT GGAGTGAC GGGCGAGGGG chr14:100913047-10091312 19 3.22e-04 AGAATGAGGA GGAGTGAC AGGCAGATCA chr3:138921299-138921379 55 3.98e-04 TCAGCTTGGA TGACAGAC AGCTCCAGAG chrX:47420473-47420553 28 3.98e-04 GGTCTTGCCT TGACAGAC GTGACCCTGA chr16:639785-639865 51 3.98e-04 GGGGCGGTCA TGACAGAC GTGCAGACAG chr16:30032657-30032737 17 3.98e-04 AACATGCCCG TGACAGAC AGGCCCACCT chr9:135448445-135448525 66 4.64e-04 TCCTCCCCCA GGACTGAC TTTGGAA chr3:114866793-114866873 55 4.64e-04 CGGTGGCCAG TGAGAGGC AGGTGTCTGG chr8:25315996-25316076 12 4.64e-04 CACCTCTCCG AGACTGAC ACTCTGCCGT chr19:156967-157047 53 4.64e-04 AATGAAGGAG AGACTGAC CAGTAGAAAG chr3:100211298-100211378 51 5.19e-04 GAGGCCCTCC GGAGTGGC GGGCCGCCCG chr14:89882512-89882592 30 5.19e-04 GGGACCTGCG GGAGTGGC GATTGGCTGC chr17:43697597-43697677 24 5.52e-04 CCCATCGCTC TGACGGAC ACCATTGCTC chr3:141726713-141726793 32 5.97e-04 ctttgctcac tcactggc ttgcctgcct chr16:84538266-84538346 33 5.97e-04 GCAACATTGC TGAGGGGC AGTCATTTGG chrX:152736035-152736115 20 5.97e-04 TGCCCTGGCT TCACTGGC CGGCAAGACC chr19:4153508-4153588 19 5.97e-04 TGCCCCAGTG TCACTGGC CCTCAACCCT chr19:18315067-18315147 33 5.97e-04 CAGCGTTCTC TCACTGGC TTAAGCTCTC chr17:21187840-21187920 56 6.17e-04 GGCGTGTGCT TGACAGGC AGGGACAGGC chr14:23790473-23790553 4 6.17e-04 GAT TGACAGGC AGATTTCCCC chr11:63953366-63953446 8 6.82e-04 GCGGCTA CGATTGGC AGTGCAAAAG chr19:19174526-19174606 4 6.82e-04 CAG CGATTGGC CGACAGTTCT chr1:112938736-112938816 43 6.82e-04 AGCAAGGAGG CGATTGGC GCTGGTGAAT chr8:71314403-71314483 24 6.82e-04 TCCCTGCCTT CGATTGGC TCACTGCCCC chr6:36165069-36165149 21 7.32e-04 TGGGTCCCTC TGACGGGC AGGTGACGCA chr19:54975242-54975322 3 7.82e-04 AG TGATTTAC ATATGTTCCC chr12:8179275-8179355 33 8.53e-04 CGTCATCCTG TGATAGAT TACCAACGCA chr17:71358989-71359069 39 8.53e-04 CAGTCACCAG TGAAAGAC AGGCCTTGCA chr19:15563077-15563157 20 8.93e-04 GGGAATGGTT GGAATGAC AGGACCTATC chr17:39943116-39943196 68 9.66e-04 TCGGCTCTAG GGATGGAC TCTAA chr13:20532724-20532804 17 1.06e-03 GGGGGGGCCC TGAAGGAC GGCCGTCGGA chr4:175204362-175204442 63 1.11e-03 CTTCGCACTG TCATTGGT CGCAAACTCT chr16:90143808-90143888 62 1.17e-03 TGCCTGTCAG TCATGGGC ACAACCCGGT chr2:136288841-136288921 3 1.27e-03 AC GGATTGGT TCTTTTTCTC chr9:34989523-34989603 60 1.39e-03 CAGGGGCGGA GGATGGGC GGCTATCACC chr16:89238013-89238093 50 1.62e-03 CCTCGGCCCG TCAGAGGC CTCCTTCGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:87973934-87974014 9.6e-06 49_[+1]_23 chr7:73017866-73017946 9.6e-06 34_[+1]_38 chr16:22682043-22682123 9.6e-06 38_[+1]_34 chr19:45409814-45409894 9.6e-06 19_[+1]_53 chr20:56036303-56036383 9.6e-06 35_[+1]_37 chr19:12476541-12476621 9.6e-06 51_[+1]_21 chr6:79943677-79943757 9.6e-06 9_[+1]_63 chr6:157950432-157950512 9.6e-06 34_[+1]_38 chr19:11849827-11849907 9.6e-06 66_[+1]_6 chr2:44395572-44395652 9.6e-06 48_[+1]_24 chr11:93060011-93060091 9.6e-06 29_[+1]_43 chr17:18086668-18086748 9.6e-06 21_[+1]_51 chr10:80166872-80166952 9.6e-06 35_[+1]_37 chr17:58679435-58679515 9.6e-06 31_[+1]_41 chr19:13906040-13906120 9.6e-06 7_[+1]_65 chr1:24743448-24743528 9.6e-06 31_[+1]_41 chr16:11332592-11332672 9.6e-06 35_[+1]_37 chr6:144600799-144600879 9.6e-06 14_[+1]_58 chr3:195872143-195872223 9.6e-06 56_[+1]_16 chr4:124317834-124317914 9.6e-06 40_[+1]_32 chr12:122502859-12250293 9.6e-06 34_[+1]_38 chr1:164528084-164528164 9.6e-06 34_[+1]_38 chr19:12512064-12512144 9.6e-06 13_[+1]_59 chr14:64971961-64972041 9.6e-06 41_[+1]_31 chr19:12551914-12551994 9.6e-06 [+1]_72 chr1:226714604-226714684 9.6e-06 23_[+1]_49 chr4:603373-603453 9.6e-06 18_[+1]_54 chr8:125121546-125121626 2.3e-05 27_[+1]_45 chr18:29673636-29673716 2.3e-05 48_[+1]_24 chr19:50706757-50706837 2.3e-05 19_[+1]_53 chr3:88108222-88108302 2.3e-05 48_[+1]_24 chr16:67926982-67927062 2.3e-05 50_[+1]_22 chr15:70392054-70392134 2.3e-05 18_[+1]_54 chr1:153895578-153895658 2.3e-05 39_[+1]_33 chr19:2375512-2375592 2.3e-05 50_[+1]_22 chr7:25894833-25894913 2.3e-05 39_[+1]_33 chr5:171847682-171847762 2.3e-05 47_[+1]_25 chr7:72298984-72299064 2.3e-05 47_[+1]_25 chr21:43884136-43884216 2.3e-05 9_[+1]_63 chr1:145476956-145477036 2.3e-05 45_[+1]_27 chr1:150601643-150601723 3.6e-05 56_[+1]_16 chr12:131613774-13161385 3.6e-05 29_[+1]_43 chr10:5522664-5522744 3.6e-05 42_[+1]_30 chr11:32197943-32198023 3.6e-05 26_[+1]_46 chr19:12444530-12444610 3.6e-05 66_[+1]_6 chr16:46782294-46782374 3.6e-05 30_[+1]_42 chr4:13546648-13546728 3.6e-05 48_[+1]_24 chr1:247171450-247171530 3.6e-05 23_[+1]_49 chr19:12595661-12595741 3.6e-05 43_[+1]_29 chr6:132834289-132834369 3.6e-05 30_[+1]_42 chr12:27676944-27677024 3.6e-05 23_[+1]_49 chr10:42863534-42863614 3.6e-05 17_[+1]_55 chr19:3275050-3275130 3.6e-05 30_[+1]_42 chr11:16394095-16394175 3.6e-05 37_[+1]_35 chr1:220078425-220078505 3.6e-05 35_[+1]_37 chr1:27677779-27677859 3.6e-05 49_[+1]_23 chr1:155057872-155057952 3.6e-05 9_[+1]_63 chr2:206809486-206809566 3.6e-05 34_[+1]_38 chr6:142330935-142331015 5e-05 48_[+1]_24 chr21:34494557-34494637 5e-05 33_[+1]_39 chr17:17566735-17566815 5e-05 49_[+1]_23 chr4:52709064-52709144 5e-05 6_[+1]_66 chr2:191533780-191533860 5e-05 40_[+1]_32 chr11:47935611-47935691 5e-05 36_[+1]_36 chr8:26240824-26240904 5e-05 49_[+1]_23 chr20:44827905-44827985 5e-05 48_[+1]_24 chr5:159780444-159780524 5e-05 34_[+1]_38 chr16:15116137-15116217 6.9e-05 37_[+1]_35 chr11:64008961-64009041 6.9e-05 46_[+1]_26 chr19:55973274-55973354 6.9e-05 56_[+1]_16 chr2:25194594-25194674 6.9e-05 14_[+1]_58 chr6:11805600-11805680 6.9e-05 50_[+1]_22 chr2:88316472-88316552 6.9e-05 49_[+1]_23 chr17:21837399-21837479 6.9e-05 16_[+1]_56 chr8:145159231-145159311 6.9e-05 69_[+1]_3 chr19:19143326-19143406 6.9e-05 29_[+1]_43 chr20:60813317-60813397 8.8e-05 37_[+1]_35 chr6:32146089-32146169 8.8e-05 51_[+1]_21 chr10:104263591-10426367 8.8e-05 43_[+1]_29 chr19:41221029-41221109 8.8e-05 41_[+1]_31 chr1:24742195-24742275 8.8e-05 24_[+1]_48 chr12:120315155-12031523 0.00011 20_[+1]_52 chr12:56123476-56123556 0.00013 66_[+1]_6 chr9:104295756-104295836 0.00013 15_[+1]_57 chr19:8590434-8590514 0.00015 35_[+1]_37 chr20:25524359-25524439 0.00015 51_[+1]_21 chr17:42589308-42589388 0.00015 34_[+1]_38 chr3:194489993-194490073 0.00015 28_[+1]_44 chr8:125364271-125364351 0.00015 8_[+1]_64 chr1:167691108-167691188 0.00016 15_[+1]_57 chr7:150521628-150521708 0.00017 19_[+1]_53 chr17:8534208-8534288 0.00017 42_[+1]_30 chr17:45177682-45177762 0.00017 2_[+1]_70 chr11:118799340-11879942 0.00017 23_[+1]_49 chr4:102268834-102268914 0.00017 4_[+1]_68 chr10:104261944-10426202 0.00017 57_[+1]_15 chr20:56596713-56596793 0.00019 28_[+1]_44 chr14:73925447-73925527 0.00019 41_[+1]_31 chr21:44394702-44394782 0.00022 58_[+1]_14 chr17:74667864-74667944 0.00022 62_[+1]_10 chr18:74204962-74205042 0.00022 27_[+1]_45 chr1:25757212-25757292 0.00022 61_[+1]_11 chr3:9885703-9885783 0.00026 35_[+1]_37 chr17:37321224-37321304 0.00026 35_[+1]_37 chr9:119449504-119449584 0.00026 33_[+1]_39 chr6:159527906-159527986 0.00026 20_[+1]_52 chr12:57848951-57849031 0.00029 32_[+1]_40 chr15:44487543-44487623 0.00029 54_[+1]_18 chr21:47604561-47604641 0.00029 56_[+1]_16 chr2:62932665-62932745 0.00029 50_[+1]_22 chr6:32143906-32143986 0.00029 19_[+1]_53 chr22:40440279-40440359 0.00032 16_[+1]_56 chr19:33166111-33166191 0.00032 47_[+1]_25 chr22:29999282-29999362 0.00032 16_[+1]_56 chr2:73298488-73298568 0.00032 18_[+1]_54 chr19:23433294-23433374 0.00032 57_[+1]_15 chr6:112194688-112194768 0.00032 15_[+1]_57 chr18:14132542-14132622 0.00032 51_[+1]_21 chrX:80377218-80377298 0.00032 48_[+1]_24 chr19:4867696-4867776 0.00032 36_[+1]_36 chr14:100913047-10091312 0.00032 18_[+1]_54 chr3:138921299-138921379 0.0004 54_[+1]_18 chrX:47420473-47420553 0.0004 27_[+1]_45 chr16:639785-639865 0.0004 50_[+1]_22 chr16:30032657-30032737 0.0004 16_[+1]_56 chr9:135448445-135448525 0.00046 65_[+1]_7 chr3:114866793-114866873 0.00046 54_[+1]_18 chr8:25315996-25316076 0.00046 11_[+1]_61 chr19:156967-157047 0.00046 52_[+1]_20 chr3:100211298-100211378 0.00052 50_[+1]_22 chr14:89882512-89882592 0.00052 29_[+1]_43 chr17:43697597-43697677 0.00055 23_[+1]_49 chr3:141726713-141726793 0.0006 31_[+1]_41 chr16:84538266-84538346 0.0006 32_[+1]_40 chrX:152736035-152736115 0.0006 19_[+1]_53 chr19:4153508-4153588 0.0006 18_[+1]_54 chr19:18315067-18315147 0.0006 32_[+1]_40 chr17:21187840-21187920 0.00062 55_[+1]_17 chr14:23790473-23790553 0.00062 3_[+1]_69 chr11:63953366-63953446 0.00068 7_[+1]_65 chr19:19174526-19174606 0.00068 3_[+1]_69 chr1:112938736-112938816 0.00068 42_[+1]_30 chr8:71314403-71314483 0.00068 23_[+1]_49 chr6:36165069-36165149 0.00073 20_[+1]_52 chr19:54975242-54975322 0.00078 2_[+1]_70 chr12:8179275-8179355 0.00085 32_[+1]_40 chr17:71358989-71359069 0.00085 38_[+1]_34 chr19:15563077-15563157 0.00089 19_[+1]_53 chr17:39943116-39943196 0.00097 67_[+1]_5 chr13:20532724-20532804 0.0011 16_[+1]_56 chr4:175204362-175204442 0.0011 62_[+1]_10 chr16:90143808-90143888 0.0012 61_[+1]_11 chr2:136288841-136288921 0.0013 2_[+1]_70 chr9:34989523-34989603 0.0014 59_[+1]_13 chr16:89238013-89238093 0.0016 49_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAKTGRC width=8 seqs=155 chr4:87973934-87974014 ( 50) TGATTGAC 1 chr7:73017866-73017946 ( 35) TGATTGAC 1 chr16:22682043-22682123 ( 39) TGATTGAC 1 chr19:45409814-45409894 ( 20) TGATTGAC 1 chr20:56036303-56036383 ( 36) TGATTGAC 1 chr19:12476541-12476621 ( 52) TGATTGAC 1 chr6:79943677-79943757 ( 10) TGATTGAC 1 chr6:157950432-157950512 ( 35) TGATTGAC 1 chr19:11849827-11849907 ( 67) TGATTGAC 1 chr2:44395572-44395652 ( 49) TGATTGAC 1 chr11:93060011-93060091 ( 30) TGATTGAC 1 chr17:18086668-18086748 ( 22) TGATTGAC 1 chr10:80166872-80166952 ( 36) TGATTGAC 1 chr17:58679435-58679515 ( 32) TGATTGAC 1 chr19:13906040-13906120 ( 8) TGATTGAC 1 chr1:24743448-24743528 ( 32) TGATTGAC 1 chr16:11332592-11332672 ( 36) TGATTGAC 1 chr6:144600799-144600879 ( 15) TGATTGAC 1 chr3:195872143-195872223 ( 57) TGATTGAC 1 chr4:124317834-124317914 ( 41) TGATTGAC 1 chr12:122502859-12250293 ( 35) TGATTGAC 1 chr1:164528084-164528164 ( 35) TGATTGAC 1 chr19:12512064-12512144 ( 14) TGATTGAC 1 chr14:64971961-64972041 ( 42) TGATTGAC 1 chr19:12551914-12551994 ( 1) TGATTGAC 1 chr1:226714604-226714684 ( 24) TGATTGAC 1 chr4:603373-603453 ( 19) TGATTGAC 1 chr8:125121546-125121626 ( 28) TGATTGGC 1 chr18:29673636-29673716 ( 49) TGATTGGC 1 chr19:50706757-50706837 ( 20) TGATTGGC 1 chr3:88108222-88108302 ( 49) TGATTGGC 1 chr16:67926982-67927062 ( 51) TGATTGGC 1 chr15:70392054-70392134 ( 19) TGATTGGC 1 chr1:153895578-153895658 ( 40) TGATTGGC 1 chr19:2375512-2375592 ( 51) TGATTGGC 1 chr7:25894833-25894913 ( 40) TGATTGGC 1 chr5:171847682-171847762 ( 48) TGATTGGC 1 chr7:72298984-72299064 ( 48) TGATTGGC 1 chr21:43884136-43884216 ( 10) TGATTGGC 1 chr1:145476956-145477036 ( 46) TGATTGGC 1 chr1:150601643-150601723 ( 57) TGAGTGAC 1 chr12:131613774-13161385 ( 30) TGAGTGAC 1 chr10:5522664-5522744 ( 43) TGAGTGAC 1 chr11:32197943-32198023 ( 27) TGAGTGAC 1 chr19:12444530-12444610 ( 67) TGAGTGAC 1 chr16:46782294-46782374 ( 31) TGAGTGAC 1 chr4:13546648-13546728 ( 49) TGAGTGAC 1 chr1:247171450-247171530 ( 24) TGAGTGAC 1 chr19:12595661-12595741 ( 44) TGAGTGAC 1 chr6:132834289-132834369 ( 31) TGAGTGAC 1 chr12:27676944-27677024 ( 24) TGAGTGAC 1 chr10:42863534-42863614 ( 18) TGAGTGAC 1 chr19:3275050-3275130 ( 31) TGAGTGAC 1 chr11:16394095-16394175 ( 38) TGAGTGAC 1 chr1:220078425-220078505 ( 36) TGAGTGAC 1 chr1:27677779-27677859 ( 50) TGAGTGAC 1 chr1:155057872-155057952 ( 10) TGAGTGAC 1 chr2:206809486-206809566 ( 35) TGAGTGAC 1 chr6:142330935-142331015 ( 49) TGACTGAC 1 chr21:34494557-34494637 ( 34) TGACTGAC 1 chr17:17566735-17566815 ( 50) TGACTGAC 1 chr4:52709064-52709144 ( 7) TGACTGAC 1 chr2:191533780-191533860 ( 41) TGACTGAC 1 chr11:47935611-47935691 ( 37) TGACTGAC 1 chr8:26240824-26240904 ( 50) TGACTGAC 1 chr20:44827905-44827985 ( 49) TGACTGAC 1 chr5:159780444-159780524 ( 35) TGACTGAC 1 chr16:15116137-15116217 ( 38) TGAGTGGC 1 chr11:64008961-64009041 ( 47) TGAGTGGC 1 chr19:55973274-55973354 ( 57) TGAGTGGC 1 chr2:25194594-25194674 ( 15) TGAGTGGC 1 chr6:11805600-11805680 ( 51) TGAGTGGC 1 chr2:88316472-88316552 ( 50) TGAGTGGC 1 chr17:21837399-21837479 ( 17) TGAGTGGC 1 chr8:145159231-145159311 ( 70) TGAGTGGC 1 chr19:19143326-19143406 ( 30) TGAGTGGC 1 chr20:60813317-60813397 ( 38) TGACTGGC 1 chr6:32146089-32146169 ( 52) TGACTGGC 1 chr10:104263591-10426367 ( 44) TGACTGGC 1 chr19:41221029-41221109 ( 42) TGACTGGC 1 chr1:24742195-24742275 ( 25) TGACTGGC 1 chr12:120315155-12031523 ( 21) TGATAGAC 1 chr12:56123476-56123556 ( 67) GGATTGAC 1 chr9:104295756-104295836 ( 16) AGATTGAC 1 chr19:8590434-8590514 ( 36) TGAATGAC 1 chr20:25524359-25524439 ( 52) TGATTGAT 1 chr17:42589308-42589388 ( 35) TGAATGAC 1 chr3:194489993-194490073 ( 29) TGATTGAT 1 chr8:125364271-125364351 ( 9) TGAATGAC 1 chr1:167691108-167691188 ( 16) TGATGGAC 1 chr7:150521628-150521708 ( 20) TCATTGGC 1 chr17:8534208-8534288 ( 43) TCATTGGC 1 chr17:45177682-45177762 ( 3) TCATTGGC 1 chr11:118799340-11879942 ( 24) TCATTGGC 1 chr4:102268834-102268914 ( 5) TCATTGGC 1 chr10:104261944-10426202 ( 58) TCATTGGC 1 chr20:56596713-56596793 ( 29) TGATAGGC 1 chr14:73925447-73925527 ( 42) TGATAGGC 1 chr21:44394702-44394782 ( 59) AGATTGGC 1 chr17:74667864-74667944 ( 63) AGATTGGC 1 chr18:74204962-74205042 ( 28) GGATTGGC 1 chr1:25757212-25757292 ( 62) GGATTGGC 1 chr3:9885703-9885783 ( 36) TGATTGGT 1 chr17:37321224-37321304 ( 36) TGATTGGT 1 chr9:119449504-119449584 ( 34) TCAGTGAC 1 chr6:159527906-159527986 ( 21) TGATTGGT 1 chr12:57848951-57849031 ( 33) TGATGGGC 1 chr15:44487543-44487623 ( 55) TGATGGGC 1 chr21:47604561-47604641 ( 57) TGATGGGC 1 chr2:62932665-62932745 ( 51) TGATGGGC 1 chr6:32143906-32143986 ( 20) TGATGGGC 1 chr22:40440279-40440359 ( 17) GGAGTGAC 1 chr19:33166111-33166191 ( 48) AGAGTGAC 1 chr22:29999282-29999362 ( 17) AGAGTGAC 1 chr2:73298488-73298568 ( 19) GGAGTGAC 1 chr19:23433294-23433374 ( 58) AGAGTGAC 1 chr6:112194688-112194768 ( 16) AGAGTGAC 1 chr18:14132542-14132622 ( 52) AGAGTGAC 1 chrX:80377218-80377298 ( 49) GGAGTGAC 1 chr19:4867696-4867776 ( 37) GGAGTGAC 1 chr14:100913047-10091312 ( 19) GGAGTGAC 1 chr3:138921299-138921379 ( 55) TGACAGAC 1 chrX:47420473-47420553 ( 28) TGACAGAC 1 chr16:639785-639865 ( 51) TGACAGAC 1 chr16:30032657-30032737 ( 17) TGACAGAC 1 chr9:135448445-135448525 ( 66) GGACTGAC 1 chr3:114866793-114866873 ( 55) TGAGAGGC 1 chr8:25315996-25316076 ( 12) AGACTGAC 1 chr19:156967-157047 ( 53) AGACTGAC 1 chr3:100211298-100211378 ( 51) GGAGTGGC 1 chr14:89882512-89882592 ( 30) GGAGTGGC 1 chr17:43697597-43697677 ( 24) TGACGGAC 1 chr3:141726713-141726793 ( 32) TCACTGGC 1 chr16:84538266-84538346 ( 33) TGAGGGGC 1 chrX:152736035-152736115 ( 20) TCACTGGC 1 chr19:4153508-4153588 ( 19) TCACTGGC 1 chr19:18315067-18315147 ( 33) TCACTGGC 1 chr17:21187840-21187920 ( 56) TGACAGGC 1 chr14:23790473-23790553 ( 4) TGACAGGC 1 chr11:63953366-63953446 ( 8) CGATTGGC 1 chr19:19174526-19174606 ( 4) CGATTGGC 1 chr1:112938736-112938816 ( 43) CGATTGGC 1 chr8:71314403-71314483 ( 24) CGATTGGC 1 chr6:36165069-36165149 ( 21) TGACGGGC 1 chr19:54975242-54975322 ( 3) TGATTTAC 1 chr12:8179275-8179355 ( 33) TGATAGAT 1 chr17:71358989-71359069 ( 39) TGAAAGAC 1 chr19:15563077-15563157 ( 20) GGAATGAC 1 chr17:39943116-39943196 ( 68) GGATGGAC 1 chr13:20532724-20532804 ( 17) TGAAGGAC 1 chr4:175204362-175204442 ( 63) TCATTGGT 1 chr16:90143808-90143888 ( 62) TCATGGGC 1 chr2:136288841-136288921 ( 3) GGATTGGT 1 chr9:34989523-34989603 ( 60) GGATGGGC 1 chr16:89238013-89238093 ( 50) TCAGAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.3284 E= 3.1e-128 -170 -351 -159 198 -1392 -170 164 -1392 225 -1392 -1392 -1392 -244 -65 -7 127 -132 -1392 -179 202 -1392 -1392 177 -499 144 -1392 57 -1392 -1392 169 -1392 -199 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 155 E= 3.1e-128 0.064516 0.025806 0.096774 0.812903 0.000000 0.090323 0.909677 0.000000 1.000000 0.000000 0.000000 0.000000 0.038710 0.187097 0.277419 0.496774 0.083871 0.000000 0.083871 0.832258 0.000000 0.000000 0.993548 0.006452 0.567742 0.000000 0.432258 0.000000 0.000000 0.948387 0.000000 0.051613 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAKTGRC MEME-1 regular expression -------------------------------------------------------------------------------- TGA[TG]TG[AG]C -------------------------------------------------------------------------------- Time 5.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GYCAATCA MEME-2 width = 8 sites = 135 llr = 1050 E-value = 9.8e-108 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYCAATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::96::8 pos.-specific C :4a12:91 probability G 8:::2:11 matrix T :6:::a:1 bits 2.3 * 2.1 * 1.8 * * 1.6 ** * Relative 1.4 ** ** Entropy 1.1 **** *** (11.2 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTCAATCA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCAATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:135448445-135448525 31 9.89e-06 CTGGGGCCCC GTCAATCA AGCAGGCCAA chr15:37393907-37393987 53 9.89e-06 GCGGCCGCGC GTCAATCA CTACGAGCCC chr7:99798001-99798081 61 9.89e-06 AGGCCTCCCT GTCAATCA TCACAGTTCT chr2:128284949-128285029 47 9.89e-06 aatcccaact gtcaatca tcccaccttc chr12:56123476-56123556 24 9.89e-06 ACGCTACCCA GTCAATCA AGACACGTCC chr7:97761401-97761481 39 9.89e-06 caatgggagt gtcaatca gaacaaccac chr17:80433436-80433516 30 9.89e-06 gagcaaCCCT GTCAATCA TACATATATA chr1:200379228-200379308 39 9.89e-06 CGGCCTGCCT GTCAATCA CTGGGGCCGT chr14:104328939-10432901 38 9.89e-06 gcggaaagca gtcaatca gaggctgaag chr5:134361061-134361141 25 9.89e-06 CAGGAAGACT GTCAATCA TGACTCATAT chr1:16115336-16115416 44 9.89e-06 gttgatgcct gtcaatca gaccaccagg chr14:89882512-89882592 55 9.89e-06 TGCACCCCGC GTCAATCA GCGGCGTTGC chr7:25894833-25894913 61 9.89e-06 TACTGTAGGT GTCAATCA TCCAAAATTT chr7:103628039-103628119 53 9.89e-06 GCAGCAGGCT GTCAATCA GGCTTTGGGT chr22:37582451-37582531 26 9.89e-06 AGATGGTTGT GTCAATCA TCGTAGACCT chr14:24740352-24740432 38 9.89e-06 GGAGAGAAGT GTCAATCA CGTAGCCCCG chr7:14029378-14029458 33 9.89e-06 ATTTCGGGCT GTCAATCA GGCGGCTTGC chr2:10611541-10611621 50 9.89e-06 AGGTCTCCCT GTCAATCA CGTCCTGGGG chr16:85767442-85767522 61 9.89e-06 TGGAGGAGCT GTCAATCA AGATGCACCT chr1:21934452-21934532 10 9.89e-06 CCACACCAT GTCAATCA GCCCCAGTCC chrX:1611056-1611136 64 9.89e-06 GCCAAAGCCT GTCAATCA CCCAAGAGA chr1:150601643-150601723 34 2.40e-05 AGGCCTATTG GCCAATCA GGAAGAGTAC chr12:8179275-8179355 51 2.40e-05 TACCAACGCA GCCAATCA ACAAGCGATC chr12:53473217-53473297 9 2.40e-05 CCATCTAA GCCAATCA GCAACGGCCT chr19:45409814-45409894 49 2.40e-05 CCCCAGACTG GCCAATCA CAGGCAGGAA chr19:1041069-1041149 45 2.40e-05 AGTCCTGGCA GCCAATCA GATGCGAGGA chrX:152736035-152736115 38 2.40e-05 CGGCAAGACC GCCAATCA ACCTCCAGCG chr7:66461552-66461632 29 2.40e-05 ATTTTCCCAT GCCAATCA TTTCTCTCTG chr1:41174585-41174665 16 2.40e-05 ATCTTTGATG GCCAATCA GAAGCAGTTA chr1:153581830-153581910 25 2.40e-05 CAGCCAGCCT GCCAATCA CTCTCGCCCC chr19:18315067-18315147 68 2.40e-05 GGGCGAAGTA GCCAATCA GAGAT chr19:36193316-36193396 45 2.40e-05 GAGCCTTAGG GCCAATCA GAAGCGACAG chr8:25315996-25316076 62 2.40e-05 ACAGAGTCCA GCCAATCA GCACCCAGTA chrX:49031154-49031234 43 2.40e-05 CTTCCAGCCT GCCAATCA ACCCTCCTGG chr16:30032657-30032737 35 2.40e-05 AGGCCCACCT GCCAATCA GAAGGGCGCT chr10:104261944-10426202 8 2.40e-05 GGCGTGA GCCAATCA CCGCAGAGGC chr21:43779190-43779270 5 2.40e-05 ttgt gccaatca ccgagttctg chr10:45474269-45474349 34 3.11e-05 CCCAGCAGCT ATCAATCA CTGTCACGAG chr19:15563077-15563157 35 3.11e-05 GACAGGACCT ATCAATCA TCCCTTGGAG chr19:24097498-24097578 63 4.50e-05 GACATCTTCT GTCACTCA GGGCCTTAGA chr1:156549361-156549441 50 4.50e-05 CTTCAGAGCT GTCACTCA AATAATTCCC chrX:47931262-47931342 22 4.50e-05 GCCCCCATCT GTCACTCA CTGCCCACCG chr7:131769808-131769888 38 4.50e-05 cccttgagct gtcactca ggcctgctcc chr19:14640048-14640128 25 4.50e-05 TGCCTTGCCT GTCACTCA ACTTCTTACC chr4:184580368-184580448 37 4.50e-05 GTAGAGCGCG GTCACTCA GGCCCAGAAA chr4:175204362-175204442 40 4.50e-05 CACCACTACT GTCACTCA AGATGCTTCG chr20:45035302-45035382 57 4.50e-05 TTGCTTGTCT GTCACTCA AGAAGGGGCG chr18:74204962-74205042 46 4.50e-05 CAGCAGAGCC GTCACTCA CGCCCAGGGG chr15:75135016-75135096 24 4.50e-05 GCAGAGGCAT GTCACTCA GGGTTCTAGA chr4:124206-124286 61 4.50e-05 TGCAACTTCT GTCACTCA AGGCCTGAGG chr3:142686589-142686669 52 4.50e-05 gtcttgccct gtcactca ggctggagtg chr19:11998488-11998568 40 4.50e-05 GGCTTCCGCT GTCACTCA GACATGGGGG chr2:206809486-206809566 24 4.50e-05 TGCCACGCTT GTCACTCA CCCTGAGTGA chr16:89238013-89238093 9 4.50e-05 AACACGCT GTCACTCA GCCTTAGCCC chr15:70392054-70392134 63 5.87e-05 GGCCAGAGCT GTCAGTCA AAACCACGCG chr16:53537374-53537454 32 5.87e-05 GGGACGGCCT GTCAGTCA TGGAAGTATC chr3:101497964-101498044 27 5.87e-05 GCGTGCTGCT GTCAGTCA ACGCCCTCGG chr22:39101550-39101630 61 5.87e-05 TGGCTGCTGT GTCAGTCA GACACTTCTC chr2:74685356-74685436 31 5.87e-05 TATTGCCGCT GTCAGTCA GGGCCGTGGG chrX:46988608-46988688 9 5.87e-05 ATAAGAGG GTCAGTCA AAGTAAGGAC chr10:102802586-10280266 30 5.87e-05 TGTGGTCCCT GTCAGTCA AAGCTAGGCT chr11:118799340-11879942 42 5.87e-05 TCAGGGCACT GTCAGTCA GAGGTCTGGG chr22:25631996-25632076 55 5.87e-05 GGCAAGCGCC GTCAGTCA CAGGCGGGCA chr11:20097344-20097424 23 5.87e-05 CACTGTGTGT GTCAGTCA TCTCCTCCTC chr5:159780444-159780524 24 5.87e-05 tagcggggct gtcagtca caatgactga chr19:55791869-55791949 22 5.87e-05 ACTCATTGCT GTCAGTCA TCCTTAGAAG chrX:47077316-47077396 55 6.88e-05 CGCAATTATG ACCAATCA CCTTGCGGAA chr9:34989523-34989603 9 6.88e-05 AGATCCAC ACCAATCA CTGCCTGGAA chr19:4153508-4153588 54 6.88e-05 CACCCTGTCC ACCAATCA GCACCTGGAG chr19:2375512-2375592 16 6.88e-05 TCCAGTGTGG ACCAATCA CTGATGGGGA chr8:125364271-125364351 29 6.88e-05 acatatagta accaatca ccaacagact chr19:4867696-4867776 55 6.88e-05 GGGCGAGGGG ACCAATCA GGTTGAGGGA chr14:37130940-37131020 38 6.88e-05 ACCGACCCGC ACCAATCA CCATGCAGCT chr16:70052370-70052450 19 8.86e-05 GCACAGTAct gccactca tcacctgcag chr22:29999282-29999362 35 8.86e-05 TGCCACTGTA GCCACTCA ACGCCGAGCC chr3:141726713-141726793 50 8.86e-05 ttgcctgcct gccactca cctcctgctg chr13:44716187-44716267 24 8.86e-05 TAGTGCACCT GCCACTCA GCCGCGCGCC chr20:52551020-52551100 27 8.86e-05 GGGCAGGGCA GCCACTCA ATAAGTGTCT chr18:32906803-32906883 50 8.86e-05 TTGCTGGCCT GCCACTCA TCCTGTGCTG chr17:71358989-71359069 27 1.08e-04 CATCGAGCAC GCCAGTCA CCAGTGAAAG chr10:102790933-10279101 46 1.08e-04 TGGTAGGGCC GCCAGTCA TTCTATTCCG chr11:58825959-58826039 38 1.18e-04 CTTAATGGAT GTCAATCT TCACTTGTCT chr3:185826983-185827063 24 1.32e-04 TCCCGCGGCT GTCCATCA CCTCTTGTTT chr16:66914335-66914415 25 1.32e-04 CAATACCTCT GTCCATCA AGGGCCCGCC chr19:7739379-7739459 24 1.32e-04 CCCTGTGCCT GTCCATCA AGGCAGAGCC chr19:7670659-7670739 10 1.32e-04 TTAAGCTAT GTCCATCA AACCTAGCTC chr4:102268834-102268914 23 1.42e-04 TAGAGGGCGC ATCACTCA GTGCCAGGTG chr8:71314403-71314483 42 1.52e-04 TCACTGCCCC ATCAGTCA GACGCACCGA chr19:45873901-45873981 24 1.65e-04 TAACCTGCCC GTCAATCC GCTAGGGCAG chrX:68776366-68776446 23 1.65e-04 CTCCAGGCCT GTCAATCC ACTGTACTCT chr3:9885703-9885783 54 2.03e-04 CAGCTGGAGT GTCAATCG GAATGGTGAC chr3:114866147-114866227 52 2.03e-04 TAGCTCTCAC GCCAATCT TGGCTTCAGT chr19:156967-157047 40 2.03e-04 AGGCTCCTAA GTCAATGA AGGAGAGACT chr21:43884136-43884216 46 2.03e-04 acaggtgtag gccaatct gcttacacct chr2:219824225-219824305 49 2.22e-04 CATTGGAGCT GCCCATCA GGAGTGCAAC chr1:31231782-31231862 43 2.22e-04 CACTGCTGCA GCCCATCA TTTCTGCCCC chr12:57848951-57849031 51 2.78e-04 AGCACAGCTG GCCAATCC TGGGACTCAG chr6:32146089-32146169 26 2.78e-04 TACCCTTTGG GCCAATCC TTTCTTTTGA chr2:198669212-198669292 58 2.78e-04 CCAGACGCCT GCCAATCC CCAAGGGCTG chr6:154914304-154914384 34 2.78e-04 ATAGGGAGCT ATCAATCT ATGTCATGGG chr3:100211298-100211378 69 3.25e-04 GGGCCGCCCG GCCAATCG GCAG chr15:44487543-44487623 31 3.25e-04 AGACCGAAAA GCCAATCG AGATAGAGTA chr11:44921660-44921740 41 3.25e-04 CCATGTGTCT GTCACTCT AGTCTGACCA chr20:56036303-56036383 21 3.25e-04 AATGGGGTGG GTCACTCT GACCTCTTGA chr16:90143808-90143888 1 3.25e-04 . GCCAATCG GCAGTCAGGA chr17:14204285-14204365 56 3.25e-04 AGAGCAGCCC GTCACTCT GGAAGGCCGG chr10:80166872-80166952 54 3.25e-04 ACACCTAGAG GCCAATGA ACTGCCTAGC chr9:104295756-104295836 34 3.25e-04 GGGACCGTCA GCCAATCG GCCGTCTGAA chr6:32143906-32143986 38 3.25e-04 AGCCTGTTTT GCCAATCG TCTCCCAGAA chr1:167691108-167691188 65 3.25e-04 GTGCGGGCAG GCCAATGA GCGGACAG chr17:37321224-37321304 54 3.48e-04 CCCCCTGCCT GTCAGTCT GGTGGGAGGC chr22:38054418-38054498 39 3.48e-04 TAAGAAGAGC GTCAGTCT CCCACCGCGT chr6:159527906-159527986 38 3.48e-04 ttgggggccc atccatca tagcgggtaa chr1:27677779-27677859 17 3.67e-04 TACTCGCCCT GTCCCTCA AGTACGTCCC chr5:96144093-96144173 38 3.87e-04 CTCGCTGGGT GTCCGTCA TCTCGCCACT chr1:17446009-17446089 25 3.87e-04 CTGCGGGCCT GTCCGTCA AGCGTGGTCC chr17:45177682-45177762 53 3.87e-04 GACTGATGGT GTCCGTCA GAGCGATGGG chr3:107241705-107241785 39 3.87e-04 TGCGCGGCCT GTCCGTCA CTGCGCGGGC chr17:44302779-44302859 38 3.87e-04 GAGCAATGGT GTCCGTCA GAGCGATGGG chr20:60813317-60813397 56 4.43e-04 TGTCCTTGCC GTCACTCC GCTGCGTGGG chr7:158750740-158750820 18 6.35e-04 GTCTGCACCT GCCCGTCA GCCACAGACA chr11:63953366-63953446 26 6.63e-04 AGTGCAAAAG ACCAATCC GTGTCGCAGA chr20:56596713-56596793 47 6.63e-04 AGGGGCCGGG ACCAATCC CCACCCTGTG chr17:42589308-42589388 55 6.63e-04 gcctagtcaa accaatcc cctgagtccc chr2:191533780-191533860 11 6.63e-04 tatcagaaga gtccatct gttgactgag chr21:34494557-34494637 52 7.25e-04 ACCTCTAGCA ACCAATGA GATTGAGGAA chr11:11643590-11643670 35 7.25e-04 AAGCGCTGCC ACCAATCG CGCTCCGGCT chr2:103251946-103252026 34 7.25e-04 TGAGCTGTCT ATCACTCT CTGACATCTG chr2:62932665-62932745 69 7.25e-04 AGGCAGTTCT ACCAATGA GGTG chr19:47220353-47220433 39 7.25e-04 AGTGCAGTCG ACCAATCG GCGCGGGCCT chr19:19143326-19143406 48 7.25e-04 GGGACCCCCA ACCAATGA CAATGAACTA chr2:43864317-43864397 54 8.09e-04 TACACCGGCT GCCAGTCC CTGGAGGAGG chr17:39943116-39943196 53 8.69e-04 CCCGGGGACT GCCAGTCG GCTCTAGGGA chr11:47935611-47935691 29 8.69e-04 TGTGGGTGTG GCCAGTGA TGACTGACAG chr19:17727892-17727972 51 1.03e-03 GGGGAGTTCA ACCACTCT CTGGGACCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCAATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:135448445-135448525 9.9e-06 30_[+2]_42 chr15:37393907-37393987 9.9e-06 52_[+2]_20 chr7:99798001-99798081 9.9e-06 60_[+2]_12 chr2:128284949-128285029 9.9e-06 46_[+2]_26 chr12:56123476-56123556 9.9e-06 23_[+2]_49 chr7:97761401-97761481 9.9e-06 38_[+2]_34 chr17:80433436-80433516 9.9e-06 29_[+2]_43 chr1:200379228-200379308 9.9e-06 38_[+2]_34 chr14:104328939-10432901 9.9e-06 37_[+2]_35 chr5:134361061-134361141 9.9e-06 24_[+2]_48 chr1:16115336-16115416 9.9e-06 43_[+2]_29 chr14:89882512-89882592 9.9e-06 54_[+2]_18 chr7:25894833-25894913 9.9e-06 60_[+2]_12 chr7:103628039-103628119 9.9e-06 52_[+2]_20 chr22:37582451-37582531 9.9e-06 25_[+2]_47 chr14:24740352-24740432 9.9e-06 37_[+2]_35 chr7:14029378-14029458 9.9e-06 32_[+2]_40 chr2:10611541-10611621 9.9e-06 49_[+2]_23 chr16:85767442-85767522 9.9e-06 60_[+2]_12 chr1:21934452-21934532 9.9e-06 9_[+2]_63 chrX:1611056-1611136 9.9e-06 63_[+2]_9 chr1:150601643-150601723 2.4e-05 33_[+2]_39 chr12:8179275-8179355 2.4e-05 50_[+2]_22 chr12:53473217-53473297 2.4e-05 8_[+2]_64 chr19:45409814-45409894 2.4e-05 48_[+2]_24 chr19:1041069-1041149 2.4e-05 44_[+2]_28 chrX:152736035-152736115 2.4e-05 37_[+2]_35 chr7:66461552-66461632 2.4e-05 28_[+2]_44 chr1:41174585-41174665 2.4e-05 15_[+2]_57 chr1:153581830-153581910 2.4e-05 24_[+2]_48 chr19:18315067-18315147 2.4e-05 67_[+2]_5 chr19:36193316-36193396 2.4e-05 44_[+2]_28 chr8:25315996-25316076 2.4e-05 61_[+2]_11 chrX:49031154-49031234 2.4e-05 42_[+2]_30 chr16:30032657-30032737 2.4e-05 34_[+2]_38 chr10:104261944-10426202 2.4e-05 7_[+2]_65 chr21:43779190-43779270 2.4e-05 4_[+2]_68 chr10:45474269-45474349 3.1e-05 33_[+2]_39 chr19:15563077-15563157 3.1e-05 34_[+2]_38 chr19:24097498-24097578 4.5e-05 62_[+2]_10 chr1:156549361-156549441 4.5e-05 49_[+2]_23 chrX:47931262-47931342 4.5e-05 21_[+2]_51 chr7:131769808-131769888 4.5e-05 37_[+2]_35 chr19:14640048-14640128 4.5e-05 24_[+2]_48 chr4:184580368-184580448 4.5e-05 36_[+2]_36 chr4:175204362-175204442 4.5e-05 39_[+2]_33 chr20:45035302-45035382 4.5e-05 56_[+2]_16 chr18:74204962-74205042 4.5e-05 45_[+2]_27 chr15:75135016-75135096 4.5e-05 23_[+2]_49 chr4:124206-124286 4.5e-05 60_[+2]_12 chr3:142686589-142686669 4.5e-05 51_[+2]_21 chr19:11998488-11998568 4.5e-05 39_[+2]_33 chr2:206809486-206809566 4.5e-05 23_[+2]_49 chr16:89238013-89238093 4.5e-05 8_[+2]_64 chr15:70392054-70392134 5.9e-05 62_[+2]_10 chr16:53537374-53537454 5.9e-05 31_[+2]_41 chr3:101497964-101498044 5.9e-05 26_[+2]_46 chr22:39101550-39101630 5.9e-05 60_[+2]_12 chr2:74685356-74685436 5.9e-05 30_[+2]_42 chrX:46988608-46988688 5.9e-05 8_[+2]_64 chr10:102802586-10280266 5.9e-05 29_[+2]_43 chr11:118799340-11879942 5.9e-05 41_[+2]_31 chr22:25631996-25632076 5.9e-05 54_[+2]_18 chr11:20097344-20097424 5.9e-05 22_[+2]_50 chr5:159780444-159780524 5.9e-05 23_[+2]_49 chr19:55791869-55791949 5.9e-05 21_[+2]_51 chrX:47077316-47077396 6.9e-05 54_[+2]_18 chr9:34989523-34989603 6.9e-05 8_[+2]_64 chr19:4153508-4153588 6.9e-05 53_[+2]_19 chr19:2375512-2375592 6.9e-05 15_[+2]_57 chr8:125364271-125364351 6.9e-05 28_[+2]_44 chr19:4867696-4867776 6.9e-05 54_[+2]_18 chr14:37130940-37131020 6.9e-05 37_[+2]_35 chr16:70052370-70052450 8.9e-05 18_[+2]_54 chr22:29999282-29999362 8.9e-05 34_[+2]_38 chr3:141726713-141726793 8.9e-05 49_[+2]_23 chr13:44716187-44716267 8.9e-05 23_[+2]_49 chr20:52551020-52551100 8.9e-05 26_[+2]_46 chr18:32906803-32906883 8.9e-05 49_[+2]_23 chr17:71358989-71359069 0.00011 26_[+2]_46 chr10:102790933-10279101 0.00011 45_[+2]_27 chr11:58825959-58826039 0.00012 37_[+2]_35 chr3:185826983-185827063 0.00013 23_[+2]_49 chr16:66914335-66914415 0.00013 24_[+2]_48 chr19:7739379-7739459 0.00013 23_[+2]_49 chr19:7670659-7670739 0.00013 9_[+2]_63 chr4:102268834-102268914 0.00014 22_[+2]_50 chr8:71314403-71314483 0.00015 41_[+2]_31 chr19:45873901-45873981 0.00017 23_[+2]_49 chrX:68776366-68776446 0.00017 22_[+2]_50 chr3:9885703-9885783 0.0002 53_[+2]_19 chr3:114866147-114866227 0.0002 51_[+2]_21 chr19:156967-157047 0.0002 39_[+2]_33 chr21:43884136-43884216 0.0002 45_[+2]_27 chr2:219824225-219824305 0.00022 48_[+2]_24 chr1:31231782-31231862 0.00022 42_[+2]_30 chr12:57848951-57849031 0.00028 50_[+2]_22 chr6:32146089-32146169 0.00028 25_[+2]_47 chr2:198669212-198669292 0.00028 57_[+2]_15 chr6:154914304-154914384 0.00028 33_[+2]_39 chr3:100211298-100211378 0.00032 68_[+2]_4 chr15:44487543-44487623 0.00032 30_[+2]_42 chr11:44921660-44921740 0.00032 40_[+2]_32 chr20:56036303-56036383 0.00032 20_[+2]_52 chr16:90143808-90143888 0.00032 [+2]_72 chr17:14204285-14204365 0.00032 55_[+2]_17 chr10:80166872-80166952 0.00032 53_[+2]_19 chr9:104295756-104295836 0.00032 33_[+2]_39 chr6:32143906-32143986 0.00032 37_[+2]_35 chr1:167691108-167691188 0.00032 64_[+2]_8 chr17:37321224-37321304 0.00035 53_[+2]_19 chr22:38054418-38054498 0.00035 38_[+2]_34 chr6:159527906-159527986 0.00035 37_[+2]_35 chr1:27677779-27677859 0.00037 16_[+2]_56 chr5:96144093-96144173 0.00039 37_[+2]_35 chr1:17446009-17446089 0.00039 24_[+2]_48 chr17:45177682-45177762 0.00039 52_[+2]_20 chr3:107241705-107241785 0.00039 38_[+2]_34 chr17:44302779-44302859 0.00039 37_[+2]_35 chr20:60813317-60813397 0.00044 55_[+2]_17 chr7:158750740-158750820 0.00064 17_[+2]_55 chr11:63953366-63953446 0.00066 25_[+2]_47 chr20:56596713-56596793 0.00066 46_[+2]_26 chr17:42589308-42589388 0.00066 54_[+2]_18 chr2:191533780-191533860 0.00066 10_[+2]_62 chr21:34494557-34494637 0.00072 51_[+2]_21 chr11:11643590-11643670 0.00072 34_[+2]_38 chr2:103251946-103252026 0.00072 33_[+2]_39 chr2:62932665-62932745 0.00072 68_[+2]_4 chr19:47220353-47220433 0.00072 38_[+2]_34 chr19:19143326-19143406 0.00072 47_[+2]_25 chr2:43864317-43864397 0.00081 53_[+2]_19 chr17:39943116-39943196 0.00087 52_[+2]_20 chr11:47935611-47935691 0.00087 28_[+2]_44 chr19:17727892-17727972 0.001 50_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCAATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYCAATCA width=8 seqs=135 chr9:135448445-135448525 ( 31) GTCAATCA 1 chr15:37393907-37393987 ( 53) GTCAATCA 1 chr7:99798001-99798081 ( 61) GTCAATCA 1 chr2:128284949-128285029 ( 47) GTCAATCA 1 chr12:56123476-56123556 ( 24) GTCAATCA 1 chr7:97761401-97761481 ( 39) GTCAATCA 1 chr17:80433436-80433516 ( 30) GTCAATCA 1 chr1:200379228-200379308 ( 39) GTCAATCA 1 chr14:104328939-10432901 ( 38) GTCAATCA 1 chr5:134361061-134361141 ( 25) GTCAATCA 1 chr1:16115336-16115416 ( 44) GTCAATCA 1 chr14:89882512-89882592 ( 55) GTCAATCA 1 chr7:25894833-25894913 ( 61) GTCAATCA 1 chr7:103628039-103628119 ( 53) GTCAATCA 1 chr22:37582451-37582531 ( 26) GTCAATCA 1 chr14:24740352-24740432 ( 38) GTCAATCA 1 chr7:14029378-14029458 ( 33) GTCAATCA 1 chr2:10611541-10611621 ( 50) GTCAATCA 1 chr16:85767442-85767522 ( 61) GTCAATCA 1 chr1:21934452-21934532 ( 10) GTCAATCA 1 chrX:1611056-1611136 ( 64) GTCAATCA 1 chr1:150601643-150601723 ( 34) GCCAATCA 1 chr12:8179275-8179355 ( 51) GCCAATCA 1 chr12:53473217-53473297 ( 9) GCCAATCA 1 chr19:45409814-45409894 ( 49) GCCAATCA 1 chr19:1041069-1041149 ( 45) GCCAATCA 1 chrX:152736035-152736115 ( 38) GCCAATCA 1 chr7:66461552-66461632 ( 29) GCCAATCA 1 chr1:41174585-41174665 ( 16) GCCAATCA 1 chr1:153581830-153581910 ( 25) GCCAATCA 1 chr19:18315067-18315147 ( 68) GCCAATCA 1 chr19:36193316-36193396 ( 45) GCCAATCA 1 chr8:25315996-25316076 ( 62) GCCAATCA 1 chrX:49031154-49031234 ( 43) GCCAATCA 1 chr16:30032657-30032737 ( 35) GCCAATCA 1 chr10:104261944-10426202 ( 8) GCCAATCA 1 chr21:43779190-43779270 ( 5) GCCAATCA 1 chr10:45474269-45474349 ( 34) ATCAATCA 1 chr19:15563077-15563157 ( 35) ATCAATCA 1 chr19:24097498-24097578 ( 63) GTCACTCA 1 chr1:156549361-156549441 ( 50) GTCACTCA 1 chrX:47931262-47931342 ( 22) GTCACTCA 1 chr7:131769808-131769888 ( 38) GTCACTCA 1 chr19:14640048-14640128 ( 25) GTCACTCA 1 chr4:184580368-184580448 ( 37) GTCACTCA 1 chr4:175204362-175204442 ( 40) GTCACTCA 1 chr20:45035302-45035382 ( 57) GTCACTCA 1 chr18:74204962-74205042 ( 46) GTCACTCA 1 chr15:75135016-75135096 ( 24) GTCACTCA 1 chr4:124206-124286 ( 61) GTCACTCA 1 chr3:142686589-142686669 ( 52) GTCACTCA 1 chr19:11998488-11998568 ( 40) GTCACTCA 1 chr2:206809486-206809566 ( 24) GTCACTCA 1 chr16:89238013-89238093 ( 9) GTCACTCA 1 chr15:70392054-70392134 ( 63) GTCAGTCA 1 chr16:53537374-53537454 ( 32) GTCAGTCA 1 chr3:101497964-101498044 ( 27) GTCAGTCA 1 chr22:39101550-39101630 ( 61) GTCAGTCA 1 chr2:74685356-74685436 ( 31) GTCAGTCA 1 chrX:46988608-46988688 ( 9) GTCAGTCA 1 chr10:102802586-10280266 ( 30) GTCAGTCA 1 chr11:118799340-11879942 ( 42) GTCAGTCA 1 chr22:25631996-25632076 ( 55) GTCAGTCA 1 chr11:20097344-20097424 ( 23) GTCAGTCA 1 chr5:159780444-159780524 ( 24) GTCAGTCA 1 chr19:55791869-55791949 ( 22) GTCAGTCA 1 chrX:47077316-47077396 ( 55) ACCAATCA 1 chr9:34989523-34989603 ( 9) ACCAATCA 1 chr19:4153508-4153588 ( 54) ACCAATCA 1 chr19:2375512-2375592 ( 16) ACCAATCA 1 chr8:125364271-125364351 ( 29) ACCAATCA 1 chr19:4867696-4867776 ( 55) ACCAATCA 1 chr14:37130940-37131020 ( 38) ACCAATCA 1 chr16:70052370-70052450 ( 19) GCCACTCA 1 chr22:29999282-29999362 ( 35) GCCACTCA 1 chr3:141726713-141726793 ( 50) GCCACTCA 1 chr13:44716187-44716267 ( 24) GCCACTCA 1 chr20:52551020-52551100 ( 27) GCCACTCA 1 chr18:32906803-32906883 ( 50) GCCACTCA 1 chr17:71358989-71359069 ( 27) GCCAGTCA 1 chr10:102790933-10279101 ( 46) GCCAGTCA 1 chr11:58825959-58826039 ( 38) GTCAATCT 1 chr3:185826983-185827063 ( 24) GTCCATCA 1 chr16:66914335-66914415 ( 25) GTCCATCA 1 chr19:7739379-7739459 ( 24) GTCCATCA 1 chr19:7670659-7670739 ( 10) GTCCATCA 1 chr4:102268834-102268914 ( 23) ATCACTCA 1 chr8:71314403-71314483 ( 42) ATCAGTCA 1 chr19:45873901-45873981 ( 24) GTCAATCC 1 chrX:68776366-68776446 ( 23) GTCAATCC 1 chr3:9885703-9885783 ( 54) GTCAATCG 1 chr3:114866147-114866227 ( 52) GCCAATCT 1 chr19:156967-157047 ( 40) GTCAATGA 1 chr21:43884136-43884216 ( 46) GCCAATCT 1 chr2:219824225-219824305 ( 49) GCCCATCA 1 chr1:31231782-31231862 ( 43) GCCCATCA 1 chr12:57848951-57849031 ( 51) GCCAATCC 1 chr6:32146089-32146169 ( 26) GCCAATCC 1 chr2:198669212-198669292 ( 58) GCCAATCC 1 chr6:154914304-154914384 ( 34) ATCAATCT 1 chr3:100211298-100211378 ( 69) GCCAATCG 1 chr15:44487543-44487623 ( 31) GCCAATCG 1 chr11:44921660-44921740 ( 41) GTCACTCT 1 chr20:56036303-56036383 ( 21) GTCACTCT 1 chr16:90143808-90143888 ( 1) GCCAATCG 1 chr17:14204285-14204365 ( 56) GTCACTCT 1 chr10:80166872-80166952 ( 54) GCCAATGA 1 chr9:104295756-104295836 ( 34) GCCAATCG 1 chr6:32143906-32143986 ( 38) GCCAATCG 1 chr1:167691108-167691188 ( 65) GCCAATGA 1 chr17:37321224-37321304 ( 54) GTCAGTCT 1 chr22:38054418-38054498 ( 39) GTCAGTCT 1 chr6:159527906-159527986 ( 38) ATCCATCA 1 chr1:27677779-27677859 ( 17) GTCCCTCA 1 chr5:96144093-96144173 ( 38) GTCCGTCA 1 chr1:17446009-17446089 ( 25) GTCCGTCA 1 chr17:45177682-45177762 ( 53) GTCCGTCA 1 chr3:107241705-107241785 ( 39) GTCCGTCA 1 chr17:44302779-44302859 ( 38) GTCCGTCA 1 chr20:60813317-60813397 ( 56) GTCACTCC 1 chr7:158750740-158750820 ( 18) GCCCGTCA 1 chr11:63953366-63953446 ( 26) ACCAATCC 1 chr20:56596713-56596793 ( 47) ACCAATCC 1 chr17:42589308-42589388 ( 55) ACCAATCC 1 chr2:191533780-191533860 ( 11) GTCCATCT 1 chr21:34494557-34494637 ( 52) ACCAATGA 1 chr11:11643590-11643670 ( 35) ACCAATCG 1 chr2:103251946-103252026 ( 34) ATCACTCT 1 chr2:62932665-62932745 ( 69) ACCAATGA 1 chr19:47220353-47220433 ( 39) ACCAATCG 1 chr19:19143326-19143406 ( 48) ACCAATGA 1 chr2:43864317-43864397 ( 54) GCCAGTCC 1 chr17:39943116-39943196 ( 53) GCCAGTCG 1 chr11:47935611-47935691 ( 29) GCCAGTGA 1 chr19:17727892-17727972 ( 51) ACCACTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCAATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.43445 E= 9.8e-108 -30 -1372 151 -1372 -1372 55 -1372 147 -1372 177 -1372 -1372 208 -140 -1372 -1372 150 -45 -59 -1372 -1372 -1372 -1372 228 -1372 169 -249 -1372 188 -199 -213 -121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCAATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 135 E= 9.8e-108 0.170370 0.000000 0.829630 0.000000 0.000000 0.429630 0.000000 0.570370 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.592593 0.214815 0.192593 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.948148 0.051852 0.000000 0.770370 0.074074 0.066667 0.088889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCAATCA MEME-2 regular expression -------------------------------------------------------------------------------- G[TC]CA[AC]TCA -------------------------------------------------------------------------------- Time 8.68 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTGGCTV MEME-3 width = 8 sites = 34 llr = 294 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTGGCTV MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::::2:4 pos.-specific C :::::532 probability G :::aa::3 matrix T :aa::27: bits 2.3 *** 2.1 *** 1.8 ***** 1.6 ***** Relative 1.4 ***** * Entropy 1.1 ***** * (12.5 bits) 0.9 ***** * 0.7 ***** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTGGCTA consensus TCG sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:44716187-44716267 8 9.60e-06 CAGCTCT ATTGGCTA GTGCACCTGC chr2:74685356-74685436 15 9.60e-06 TGTTGTCTGT ATTGGCTA TTGCCGCTGT chr19:45873901-45873981 8 9.60e-06 CGAGACC ATTGGCTA ACCTGCCCGT chr2:43864317-43864397 38 9.60e-06 GTGGTCTCCC ATTGGCTA CACCGGCTGC chr22:38054418-38054498 23 1.63e-05 GTAGATTCTT ATTGGTTA AGAAGAGCGT chr11:44921660-44921740 59 3.65e-05 AGTCTGACCA ATTGGCTG TGGAGGTGTG chr7:150521628-150521708 59 3.65e-05 CAGGTTGTCC ATTGGATA CCAAGATATG chr19:12444530-12444610 32 3.65e-05 CATAGCTCTG ATTGGATA GGGCTCCAGG chr19:11849827-11849907 32 3.65e-05 CTCATCCCTG ATTGGATA GTGCTCCAGG chr18:71959315-71959395 48 3.65e-05 GCGGGTGTTA ATTGGCTG CCGGAGGTGC chr14:89882512-89882592 39 3.65e-05 GGGAGTGGCG ATTGGCTG CACCCCGCGT chr17:45177682-45177762 36 3.65e-05 CGTGAGCGCC ATTGGCTG ACTGATGGTG chr5:171847682-171847762 21 3.65e-05 CGGCAAGCCC ATTGGCTG CGACATTTCT chr10:102790933-10279101 30 3.65e-05 CCGGGCTCCC ATTGGCTG GTAGGGCCGC chr19:12551914-12551994 38 3.65e-05 CACGCCCCTG ATTGGATA GGGCGTCAGG chr17:44302779-44302859 21 3.65e-05 CGTGAGCGCC ATTGGCTG AGCAATGGTG chr13:20437855-20437935 35 4.99e-05 GGGCACGCCC ATTGGCTC CGACGGCCGT chrX:47931262-47931342 47 4.99e-05 CCGGTCCTCC ATTGGCTC CTTTGAACAC chr8:26240824-26240904 24 4.99e-05 AAGGCAGCTC ATTGGCTC AGGCATGGGA chr7:72298984-72299064 10 4.99e-05 TCCGTTTGG ATTGGCTC AGACTGGGAA chr14:104328939-10432901 21 5.92e-05 gtggcccaca attggttg cggaaagcag chr14:73925447-73925527 12 5.92e-05 TTTAGTTGTA ATTGGTTG AGGGTTGGGC chr22:39101550-39101630 45 8.24e-05 TTCTCTCCTC ATTGGATG GCTGCTGTGT chr2:219824225-219824305 33 1.11e-04 GCGAGAGTCT ATTGGTCA TTGGAGCTGC chr8:125364271-125364351 66 1.11e-04 aagcaatgtg attggtca tgattac chr20:40247085-40247165 40 1.11e-04 ACACAGACCC ATTGGTCA TCCCGGCTGC chr1:31231782-31231862 27 1.40e-04 TGGAGTTAGG ATTGGACA CTGCTGCAGC chr19:12595661-12595741 8 1.40e-04 GCCCCTG ATTGGACA TTGCACTCTT chr17:39943116-39943196 37 1.59e-04 TCCGCTTGCC ATTGGCCC CGGGGACTGC chr18:48405377-48405457 29 1.59e-04 CCTGCCTCCA ATTGGCCC GCGAGCCCGT chr6:132834289-132834369 16 1.59e-04 CCCCTTTTCT ATTGGCCC GCGGGGCTGA chr2:198669212-198669292 2 1.72e-04 G ATTGGTCG GGCCGAGCCC chr19:7739379-7739459 50 1.99e-04 CCCACATCCA ATTGGTCC GTCTGCTCCA chr19:12476541-12476621 15 2.22e-04 CCCAACACTG ATTGGGTA GAGCTCCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:44716187-44716267 9.6e-06 7_[+3]_65 chr2:74685356-74685436 9.6e-06 14_[+3]_58 chr19:45873901-45873981 9.6e-06 7_[+3]_65 chr2:43864317-43864397 9.6e-06 37_[+3]_35 chr22:38054418-38054498 1.6e-05 22_[+3]_50 chr11:44921660-44921740 3.6e-05 58_[+3]_14 chr7:150521628-150521708 3.6e-05 58_[+3]_14 chr19:12444530-12444610 3.6e-05 31_[+3]_41 chr19:11849827-11849907 3.6e-05 31_[+3]_41 chr18:71959315-71959395 3.6e-05 47_[+3]_25 chr14:89882512-89882592 3.6e-05 38_[+3]_34 chr17:45177682-45177762 3.6e-05 35_[+3]_37 chr5:171847682-171847762 3.6e-05 20_[+3]_52 chr10:102790933-10279101 3.6e-05 29_[+3]_43 chr19:12551914-12551994 3.6e-05 37_[+3]_35 chr17:44302779-44302859 3.6e-05 20_[+3]_52 chr13:20437855-20437935 5e-05 34_[+3]_38 chrX:47931262-47931342 5e-05 46_[+3]_26 chr8:26240824-26240904 5e-05 23_[+3]_49 chr7:72298984-72299064 5e-05 9_[+3]_63 chr14:104328939-10432901 5.9e-05 20_[+3]_52 chr14:73925447-73925527 5.9e-05 11_[+3]_61 chr22:39101550-39101630 8.2e-05 44_[+3]_28 chr2:219824225-219824305 0.00011 32_[+3]_40 chr8:125364271-125364351 0.00011 65_[+3]_7 chr20:40247085-40247165 0.00011 39_[+3]_33 chr1:31231782-31231862 0.00014 26_[+3]_46 chr19:12595661-12595741 0.00014 7_[+3]_65 chr17:39943116-39943196 0.00016 36_[+3]_36 chr18:48405377-48405457 0.00016 28_[+3]_44 chr6:132834289-132834369 0.00016 15_[+3]_57 chr2:198669212-198669292 0.00017 1_[+3]_71 chr19:7739379-7739459 0.0002 49_[+3]_23 chr19:12476541-12476621 0.00022 14_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTGGCTV width=8 seqs=34 chr13:44716187-44716267 ( 8) ATTGGCTA 1 chr2:74685356-74685436 ( 15) ATTGGCTA 1 chr19:45873901-45873981 ( 8) ATTGGCTA 1 chr2:43864317-43864397 ( 38) ATTGGCTA 1 chr22:38054418-38054498 ( 23) ATTGGTTA 1 chr11:44921660-44921740 ( 59) ATTGGCTG 1 chr7:150521628-150521708 ( 59) ATTGGATA 1 chr19:12444530-12444610 ( 32) ATTGGATA 1 chr19:11849827-11849907 ( 32) ATTGGATA 1 chr18:71959315-71959395 ( 48) ATTGGCTG 1 chr14:89882512-89882592 ( 39) ATTGGCTG 1 chr17:45177682-45177762 ( 36) ATTGGCTG 1 chr5:171847682-171847762 ( 21) ATTGGCTG 1 chr10:102790933-10279101 ( 30) ATTGGCTG 1 chr19:12551914-12551994 ( 38) ATTGGATA 1 chr17:44302779-44302859 ( 21) ATTGGCTG 1 chr13:20437855-20437935 ( 35) ATTGGCTC 1 chrX:47931262-47931342 ( 47) ATTGGCTC 1 chr8:26240824-26240904 ( 24) ATTGGCTC 1 chr7:72298984-72299064 ( 10) ATTGGCTC 1 chr14:104328939-10432901 ( 21) ATTGGTTG 1 chr14:73925447-73925527 ( 12) ATTGGTTG 1 chr22:39101550-39101630 ( 45) ATTGGATG 1 chr2:219824225-219824305 ( 33) ATTGGTCA 1 chr8:125364271-125364351 ( 66) ATTGGTCA 1 chr20:40247085-40247165 ( 40) ATTGGTCA 1 chr1:31231782-31231862 ( 27) ATTGGACA 1 chr19:12595661-12595741 ( 8) ATTGGACA 1 chr17:39943116-39943196 ( 37) ATTGGCCC 1 chr18:48405377-48405457 ( 29) ATTGGCCC 1 chr6:132834289-132834369 ( 16) ATTGGCCC 1 chr2:198669212-198669292 ( 2) ATTGGTCG 1 chr19:7739379-7739459 ( 50) ATTGGTCC 1 chr19:12476541-12476621 ( 15) ATTGGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 1.1e-006 225 -1173 -1173 -1173 -1173 -1173 -1173 228 -1173 -1173 -1173 228 -1173 -1173 178 -1173 -1173 -1173 178 -1173 -3 85 -330 19 -1173 0 -1173 178 107 -32 15 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.1e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.205882 0.529412 0.029412 0.235294 0.000000 0.294118 0.000000 0.705882 0.441176 0.235294 0.323529 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTGGCTV MEME-3 regular expression -------------------------------------------------------------------------------- ATTGG[CTA][TC][AGC] -------------------------------------------------------------------------------- Time 12.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGCCCC MEME-4 width = 8 sites = 51 llr = 403 E-value = 4.4e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::2:::1 pos.-specific C 9aa:aa87 probability G :::8:::: matrix T ::::::22 bits 2.3 2.1 1.8 * ** 1.6 ** ** Relative 1.4 *** ** Entropy 1.1 ******* (11.4 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCGCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:73017866-73017946 11 5.52e-05 TTCCCTAGTT CCCGCCCC ATAGGCCTCC chrX:47931262-47931342 9 5.52e-05 CGTCAGGA CCCGCCCC CATCTGTCAC chr2:73298488-73298568 67 5.52e-05 GGAGTCCGCG CCCGCCCC GTTGAC chr16:67926982-67927062 35 5.52e-05 AGTGCCCGTC CCCGCCCC GAAGAGGTTG chr6:32146089-32146169 8 5.52e-05 ACCTTTT CCCGCCCC TACCCTTTGG chr2:25194594-25194674 65 5.52e-05 CACGCTGGGG CCCGCCCC TCCCGGCT chr19:12444530-12444610 15 5.52e-05 TTCTCACGAC CCCGCCCC ATAGCTCTGA chr19:11849827-11849907 14 5.52e-05 TCTCACAATC CCCGCCCC CTCATCCCTG chr19:14640048-14640128 42 5.52e-05 AACTTCTTAC CCCGCCCC CGCGTCTGGC chr3:101497964-101498044 45 5.52e-05 ACGCCCTCGG CCCGCCCC CGCCGAAGCT chr1:17446009-17446089 41 5.52e-05 CAAGCGTGGT CCCGCCCC TAACTCGTCC chr19:54975242-54975322 52 5.52e-05 CATGTAATGC CCCGCCCC TTTCCGGGTG chr12:27676944-27677024 73 5.52e-05 cgcccccggc cccgcccc chr10:102802586-10280266 9 5.52e-05 AGCAGAGT CCCGCCCC TGCTGTGGTC chr4:48782429-48782509 14 5.52e-05 CTACCTTCTC CCCGCCCC TTTTCCCGGG chr14:24740352-24740432 52 5.52e-05 ATCACGTAGC CCCGCCCC TACTAGCTCC chr19:12512064-12512144 34 5.52e-05 TTCCCACGAA CCCGCCCC ACGGCCCTTA chr19:12551914-12551994 21 5.52e-05 TTCCCACGAA CCCGCCCC ACGCCCCTGA chr1:145476956-145477036 71 5.52e-05 CTAGCTCGTC CCCGCCCC CA chr17:43697597-43697677 9 5.52e-05 CCTTCTGT CCCGCCCC ATCGCTCTGA chr14:37130940-37131020 66 5.52e-05 TGCCCTCGGA CCCGCCCC TTTTAGG chr12:131613774-13161385 10 9.40e-05 AGTGACAGG CCCGCCCT GCTGTCTGGG chr12:56123476-56123556 51 9.40e-05 CGCGTCGGGT CCCGCCCT CTGGGGGAGG chr22:36784250-36784330 50 9.40e-05 AGGCGGGAGC CCCGCCCT CTAGGGCGGG chr1:247171450-247171530 7 1.34e-04 CCAGGC CCCACCCC CTCAGGTCTT chr3:194489993-194490073 14 1.34e-04 CTCCTCAGGC CCCACCCC TTCTGGATGA chr19:3275050-3275130 21 1.34e-04 CTCTCTCCCT CCCACCCC CATGAGTGAC chr9:135448445-135448525 6 1.73e-04 CTGCC CCCGCCTC CTCAGTGCTG chr20:60813317-60813397 20 1.73e-04 GCGGCATAAC CCCGCCTC TCTCCTGCTG chr16:66914335-66914415 37 1.73e-04 CCATCAAGGG CCCGCCTC CGCAATTGAG chr4:102268834-102268914 58 1.73e-04 CCCCGCTTGT CCCGCCTC CCGCTCCTCC chr12:120315155-12031523 48 2.12e-04 TCAGCCAGGC CCCGCCCA TGTCCCTAAA chr19:8590434-8590514 64 2.12e-04 CGCTCTTTGC CCCGCCCA CAAATCTAG chrX:152736035-152736115 2 2.12e-04 C CCCGCCCA TGCCCTGGCT chr18:71959315-71959395 26 2.12e-04 CAAGCGTGGT CCCGCCCA GTATGCGGGT chr1:153581830-153581910 40 2.12e-04 TCACTCTCGC CCCGCCCA AGCCACGCCT chr10:5522664-5522744 11 2.40e-04 CCCATCTCCA CCCACCCT ATCCAACCCT chr1:153895578-153895658 6 2.40e-04 TTCAC CCCACCCT TGAAGAATGA chr16:46782294-46782374 12 2.40e-04 TTGCTTATCT CCCACCCT ACACGGGCCT chr1:220078425-220078505 20 2.40e-04 aatcccagac cccaccct ggataaaatg chr14:23790473-23790553 51 2.67e-04 GGCGCAGTGC CCCGCCTT AGAGGTGGGG chr7:66461552-66461632 49 2.67e-04 TCTCTCTGGG CCCGCCTT TTCCCAGTCT chr19:12595661-12595741 29 2.67e-04 CACTCTTGGA CCCGCCTT CGTTGCCTGA chr12:122502859-12250293 18 2.95e-04 TCTCTGAAGA CCCACCTC TTCCCCAAGT chr1:164528084-164528164 20 2.95e-04 TCCTTCCCGG CCCACCTC TGAACTCTGA chr20:56596713-56596793 11 3.63e-04 TGCCCTTTGT CCCACCCA CAAGGCAGAA chr6:132834289-132834369 49 3.63e-04 AGCGGCCCTC ACCGCCCC TCCGGTTCCA chr6:109330819-109330899 50 3.63e-04 CCCGCAAAGC ACCGCCCC TCCGGCGCGG chr10:102790933-10279101 14 3.63e-04 GCTGGCCTGC ACCGCCCC GGGCTCCCAT chr7:14029378-14029458 72 4.29e-04 GCGGGTCTCC CTCGCCCC T chr19:55791869-55791949 49 4.29e-04 GGTTTGGGAC CTCGCCCC AACTAATCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:73017866-73017946 5.5e-05 10_[+4]_62 chrX:47931262-47931342 5.5e-05 8_[+4]_64 chr2:73298488-73298568 5.5e-05 66_[+4]_6 chr16:67926982-67927062 5.5e-05 34_[+4]_38 chr6:32146089-32146169 5.5e-05 7_[+4]_65 chr2:25194594-25194674 5.5e-05 64_[+4]_8 chr19:12444530-12444610 5.5e-05 14_[+4]_58 chr19:11849827-11849907 5.5e-05 13_[+4]_59 chr19:14640048-14640128 5.5e-05 41_[+4]_31 chr3:101497964-101498044 5.5e-05 44_[+4]_28 chr1:17446009-17446089 5.5e-05 40_[+4]_32 chr19:54975242-54975322 5.5e-05 51_[+4]_21 chr12:27676944-27677024 5.5e-05 72_[+4] chr10:102802586-10280266 5.5e-05 8_[+4]_64 chr4:48782429-48782509 5.5e-05 13_[+4]_59 chr14:24740352-24740432 5.5e-05 51_[+4]_21 chr19:12512064-12512144 5.5e-05 33_[+4]_39 chr19:12551914-12551994 5.5e-05 20_[+4]_52 chr1:145476956-145477036 5.5e-05 70_[+4]_2 chr17:43697597-43697677 5.5e-05 8_[+4]_64 chr14:37130940-37131020 5.5e-05 65_[+4]_7 chr12:131613774-13161385 9.4e-05 9_[+4]_63 chr12:56123476-56123556 9.4e-05 50_[+4]_22 chr22:36784250-36784330 9.4e-05 49_[+4]_23 chr1:247171450-247171530 0.00013 6_[+4]_66 chr3:194489993-194490073 0.00013 13_[+4]_59 chr19:3275050-3275130 0.00013 20_[+4]_52 chr9:135448445-135448525 0.00017 5_[+4]_67 chr20:60813317-60813397 0.00017 19_[+4]_53 chr16:66914335-66914415 0.00017 36_[+4]_36 chr4:102268834-102268914 0.00017 57_[+4]_15 chr12:120315155-12031523 0.00021 47_[+4]_25 chr19:8590434-8590514 0.00021 63_[+4]_9 chrX:152736035-152736115 0.00021 1_[+4]_71 chr18:71959315-71959395 0.00021 25_[+4]_47 chr1:153581830-153581910 0.00021 39_[+4]_33 chr10:5522664-5522744 0.00024 10_[+4]_62 chr1:153895578-153895658 0.00024 5_[+4]_67 chr16:46782294-46782374 0.00024 11_[+4]_61 chr1:220078425-220078505 0.00024 19_[+4]_53 chr14:23790473-23790553 0.00027 50_[+4]_22 chr7:66461552-66461632 0.00027 48_[+4]_24 chr19:12595661-12595741 0.00027 28_[+4]_44 chr12:122502859-12250293 0.0003 17_[+4]_55 chr1:164528084-164528164 0.0003 19_[+4]_53 chr20:56596713-56596793 0.00036 10_[+4]_62 chr6:132834289-132834369 0.00036 48_[+4]_24 chr6:109330819-109330899 0.00036 49_[+4]_23 chr10:102790933-10279101 0.00036 13_[+4]_59 chr7:14029378-14029458 0.00043 71_[+4]_1 chr19:55791869-55791949 0.00043 48_[+4]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGCCCC width=8 seqs=51 chr7:73017866-73017946 ( 11) CCCGCCCC 1 chrX:47931262-47931342 ( 9) CCCGCCCC 1 chr2:73298488-73298568 ( 67) CCCGCCCC 1 chr16:67926982-67927062 ( 35) CCCGCCCC 1 chr6:32146089-32146169 ( 8) CCCGCCCC 1 chr2:25194594-25194674 ( 65) CCCGCCCC 1 chr19:12444530-12444610 ( 15) CCCGCCCC 1 chr19:11849827-11849907 ( 14) CCCGCCCC 1 chr19:14640048-14640128 ( 42) CCCGCCCC 1 chr3:101497964-101498044 ( 45) CCCGCCCC 1 chr1:17446009-17446089 ( 41) CCCGCCCC 1 chr19:54975242-54975322 ( 52) CCCGCCCC 1 chr12:27676944-27677024 ( 73) CCCGCCCC 1 chr10:102802586-10280266 ( 9) CCCGCCCC 1 chr4:48782429-48782509 ( 14) CCCGCCCC 1 chr14:24740352-24740432 ( 52) CCCGCCCC 1 chr19:12512064-12512144 ( 34) CCCGCCCC 1 chr19:12551914-12551994 ( 21) CCCGCCCC 1 chr1:145476956-145477036 ( 71) CCCGCCCC 1 chr17:43697597-43697677 ( 9) CCCGCCCC 1 chr14:37130940-37131020 ( 66) CCCGCCCC 1 chr12:131613774-13161385 ( 10) CCCGCCCT 1 chr12:56123476-56123556 ( 51) CCCGCCCT 1 chr22:36784250-36784330 ( 50) CCCGCCCT 1 chr1:247171450-247171530 ( 7) CCCACCCC 1 chr3:194489993-194490073 ( 14) CCCACCCC 1 chr19:3275050-3275130 ( 21) CCCACCCC 1 chr9:135448445-135448525 ( 6) CCCGCCTC 1 chr20:60813317-60813397 ( 20) CCCGCCTC 1 chr16:66914335-66914415 ( 37) CCCGCCTC 1 chr4:102268834-102268914 ( 58) CCCGCCTC 1 chr12:120315155-12031523 ( 48) CCCGCCCA 1 chr19:8590434-8590514 ( 64) CCCGCCCA 1 chrX:152736035-152736115 ( 2) CCCGCCCA 1 chr18:71959315-71959395 ( 26) CCCGCCCA 1 chr1:153581830-153581910 ( 40) CCCGCCCA 1 chr10:5522664-5522744 ( 11) CCCACCCT 1 chr1:153895578-153895658 ( 6) CCCACCCT 1 chr16:46782294-46782374 ( 12) CCCACCCT 1 chr1:220078425-220078505 ( 20) CCCACCCT 1 chr14:23790473-23790553 ( 51) CCCGCCTT 1 chr7:66461552-66461632 ( 49) CCCGCCTT 1 chr19:12595661-12595741 ( 29) CCCGCCTT 1 chr12:122502859-12250293 ( 18) CCCACCTC 1 chr1:164528084-164528164 ( 20) CCCACCTC 1 chr20:56596713-56596793 ( 11) CCCACCCA 1 chr6:132834289-132834369 ( 49) ACCGCCCC 1 chr6:109330819-109330899 ( 50) ACCGCCCC 1 chr10:102790933-10279101 ( 14) ACCGCCCC 1 chr7:14029378-14029458 ( 72) CTCGCCCC 1 chr19:55791869-55791949 ( 49) CTCGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.63023 E= 4.4e-008 -183 168 -1232 -1232 -1232 171 -1232 -239 -1232 177 -1232 -1232 -10 -1232 147 -1232 -1232 177 -1232 -1232 -1232 177 -1232 -1232 -1232 149 -1232 -22 -83 122 -1232 -7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 4.4e-008 0.058824 0.941176 0.000000 0.000000 0.000000 0.960784 0.000000 0.039216 0.000000 1.000000 0.000000 0.000000 0.196078 0.000000 0.803922 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.823529 0.000000 0.176471 0.117647 0.686275 0.000000 0.196078 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCCGCCCC -------------------------------------------------------------------------------- Time 15.39 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCCAATG MEME-5 width = 8 sites = 29 llr = 253 E-value = 4.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCCAATG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 71::aa:2 pos.-specific C :1aa:::2 probability G 18:::::5 matrix T 1:::::a: bits 2.3 *** 2.1 *** 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 * ***** (12.6 bits) 0.9 * ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCCAATG consensus A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCAATG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:104263591-10426367 61 1.40e-05 CACAGACATT AGCCAATG GGTGCTTGGA chr6:36165069-36165149 38 1.40e-05 CAGGTGACGC AGCCAATG GGTTCTCGCC chr2:25194594-25194674 32 1.40e-05 CCGCCCTTCC AGCCAATG GACACGTCGC chr13:20532724-20532804 34 1.40e-05 CGGCCGTCGG AGCCAATG GGCGTGCCCG chr3:114866147-114866227 71 1.40e-05 GGCTTCAGTG AGCCAATG AG chr6:109330819-109330899 20 1.40e-05 CGGCCACGCA AGCCAATG CGGGCTCGCG chr17:43697597-43697677 42 1.40e-05 ACCATTGCTC AGCCAATG GCGCTCACGA chr17:71358989-71359069 56 2.40e-05 CAGGCCTTGC AGCCAATA GGCTGGGCTC chr1:41174585-41174665 67 2.40e-05 GAACTCTGAC AGCCAATA AGAAAT chr1:120838374-120838454 40 2.40e-05 TGGGGCCCAT AGCCAATA GGAAGAGCTG chr6:11805600-11805680 68 2.40e-05 CAGGGGGAGC AGCCAATA GTGTG chr12:53473217-53473297 48 3.81e-05 CACCTGCAGG AGCCAATC GGAAGGCGCA chr7:66461552-66461632 68 3.81e-05 TCCCAGTCTG AGCCAATC CAAAT chr19:45873901-45873981 42 3.81e-05 GCTAGGGCAG AGCCAATC GGGATACTGC chr19:33166111-33166191 23 7.60e-05 GCCACAGCTG ACCCAATG AGAAACCGTC chr19:41221029-41221109 17 7.60e-05 TCGGCCAGCC AACCAATG GCGCGGCAGC chr19:55973274-55973354 32 7.60e-05 CAGGTCGTTC TGCCAATG GAGAGCCGTA chr17:74667864-74667944 29 7.60e-05 AGGATGCGAT ACCCAATG GGGATCAAGG chr1:112938736-112938816 60 7.60e-05 CGCTGGTGAA TGCCAATG CCCCCGCCGG chrX:68776366-68776446 40 7.60e-05 CACTGTACTC TGCCAATG GTCTGAGAAC chr16:639785-639865 68 9.54e-05 CGTGCAGACA GGCCAATG GCTGA chr3:107241705-107241785 54 9.54e-05 TCACTGCGCG GGCCAATG GCAGGCTGCC chrX:47420473-47420553 45 1.23e-04 CGTGACCCTG ACCCAATA AGGGTGGAAG chr2:73298488-73298568 36 1.37e-04 CGGCGCCAAG GGCCAATA GGAAGCCAAG chrX:80377218-80377298 66 1.37e-04 CAGGCTCTCA GGCCAATA AGAAGAG chr1:153895578-153895658 57 1.75e-04 CGTGCTTAAA ACCCAATC ATAAACGGAG chr7:25894833-25894913 15 1.75e-04 TATTGTTGTC AACCAATC AGCATCCTAC chr22:37582451-37582531 43 1.75e-04 ATCGTAGACC TGCCAATC AGATGCCAAG chr16:85767442-85767522 27 1.75e-04 tcaccagggg aaccaatc tctccGCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCAATG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:104263591-10426367 1.4e-05 60_[+5]_12 chr6:36165069-36165149 1.4e-05 37_[+5]_35 chr2:25194594-25194674 1.4e-05 31_[+5]_41 chr13:20532724-20532804 1.4e-05 33_[+5]_39 chr3:114866147-114866227 1.4e-05 70_[+5]_2 chr6:109330819-109330899 1.4e-05 19_[+5]_53 chr17:43697597-43697677 1.4e-05 41_[+5]_31 chr17:71358989-71359069 2.4e-05 55_[+5]_17 chr1:41174585-41174665 2.4e-05 66_[+5]_6 chr1:120838374-120838454 2.4e-05 39_[+5]_33 chr6:11805600-11805680 2.4e-05 67_[+5]_5 chr12:53473217-53473297 3.8e-05 47_[+5]_25 chr7:66461552-66461632 3.8e-05 67_[+5]_5 chr19:45873901-45873981 3.8e-05 41_[+5]_31 chr19:33166111-33166191 7.6e-05 22_[+5]_50 chr19:41221029-41221109 7.6e-05 16_[+5]_56 chr19:55973274-55973354 7.6e-05 31_[+5]_41 chr17:74667864-74667944 7.6e-05 28_[+5]_44 chr1:112938736-112938816 7.6e-05 59_[+5]_13 chrX:68776366-68776446 7.6e-05 39_[+5]_33 chr16:639785-639865 9.5e-05 67_[+5]_5 chr3:107241705-107241785 9.5e-05 53_[+5]_19 chrX:47420473-47420553 0.00012 44_[+5]_28 chr2:73298488-73298568 0.00014 35_[+5]_37 chrX:80377218-80377298 0.00014 65_[+5]_7 chr1:153895578-153895658 0.00017 56_[+5]_16 chr7:25894833-25894913 0.00017 14_[+5]_58 chr22:37582451-37582531 0.00017 42_[+5]_30 chr16:85767442-85767522 0.00017 26_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCAATG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCCAATG width=8 seqs=29 chr10:104263591-10426367 ( 61) AGCCAATG 1 chr6:36165069-36165149 ( 38) AGCCAATG 1 chr2:25194594-25194674 ( 32) AGCCAATG 1 chr13:20532724-20532804 ( 34) AGCCAATG 1 chr3:114866147-114866227 ( 71) AGCCAATG 1 chr6:109330819-109330899 ( 20) AGCCAATG 1 chr17:43697597-43697677 ( 42) AGCCAATG 1 chr17:71358989-71359069 ( 56) AGCCAATA 1 chr1:41174585-41174665 ( 67) AGCCAATA 1 chr1:120838374-120838454 ( 40) AGCCAATA 1 chr6:11805600-11805680 ( 68) AGCCAATA 1 chr12:53473217-53473297 ( 48) AGCCAATC 1 chr7:66461552-66461632 ( 68) AGCCAATC 1 chr19:45873901-45873981 ( 42) AGCCAATC 1 chr19:33166111-33166191 ( 23) ACCCAATG 1 chr19:41221029-41221109 ( 17) AACCAATG 1 chr19:55973274-55973354 ( 32) TGCCAATG 1 chr17:74667864-74667944 ( 29) ACCCAATG 1 chr1:112938736-112938816 ( 60) TGCCAATG 1 chrX:68776366-68776446 ( 40) TGCCAATG 1 chr16:639785-639865 ( 68) GGCCAATG 1 chr3:107241705-107241785 ( 54) GGCCAATG 1 chrX:47420473-47420553 ( 45) ACCCAATA 1 chr2:73298488-73298568 ( 36) GGCCAATA 1 chrX:80377218-80377298 ( 66) GGCCAATA 1 chr1:153895578-153895658 ( 57) ACCCAATC 1 chr7:25894833-25894913 ( 15) AACCAATC 1 chr22:37582451-37582531 ( 43) TGCCAATC 1 chr16:85767442-85767522 ( 27) AACCAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCAATG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 4.0e-002 179 -1150 -108 -58 -102 -109 138 -1150 -1150 177 -1150 -1150 -1150 177 -1150 -1150 225 -1150 -1150 -1150 225 -1150 -1150 -1150 -1150 -1150 -1150 228 20 -28 83 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCAATG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 4.0e-002 0.724138 0.000000 0.137931 0.137931 0.103448 0.137931 0.758621 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.241379 0.241379 0.517241 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCAATG MEME-5 regular expression -------------------------------------------------------------------------------- AGCCAAT[GAC] -------------------------------------------------------------------------------- Time 18.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1611056-1611136 4.96e-03 26_[+2(9.89e-06)]_29_[+2(9.89e-06)]_\ 9 chr21:43779190-43779270 4.86e-03 4_[+2(2.40e-05)]_10_[+2(6.88e-05)]_\ 50 chr1:21934452-21934532 1.32e-02 9_[+2(9.89e-06)]_63 chr16:89238013-89238093 2.86e-02 8_[+2(4.50e-05)]_53_[+2(4.50e-05)]_\ 3 chr2:206809486-206809566 1.20e-04 23_[+2(4.50e-05)]_3_[+1(3.65e-05)]_\ 38 chr1:155057872-155057952 1.58e-01 9_[+1(3.65e-05)]_34_[+1(3.65e-05)]_\ 21 chr1:27677779-27677859 1.38e-03 49_[+1(3.65e-05)]_23 chr6:154914304-154914384 1.55e-01 80 chr16:85767442-85767522 5.83e-03 60_[+2(9.89e-06)]_12 chr14:37130940-37131020 3.79e-03 37_[+2(6.88e-05)]_20_[+4(5.52e-05)]_\ 7 chr19:17727892-17727972 1.26e-01 80 chr2:10611541-10611621 9.54e-03 49_[+2(9.89e-06)]_23 chr19:19143326-19143406 7.93e-04 29_[+1(6.89e-05)]_9_[+5(7.60e-05)]_\ 26 chr10:104261944-10426202 3.92e-07 7_[+2(2.40e-05)]_44_[+3(9.60e-06)]_\ 13 chr17:44302779-44302859 4.33e-03 20_[+3(3.65e-05)]_52 chr17:43697597-43697677 1.83e-05 8_[+4(5.52e-05)]_25_[+5(1.40e-05)]_\ 23_[+5(9.54e-05)] chr4:102268834-102268914 7.80e-06 6_[+3(9.60e-06)]_66 chr16:30032657-30032737 2.38e-04 34_[+2(2.40e-05)]_38 chr2:136288841-136288921 1.23e-01 4_[+3(9.18e-05)]_68 chr19:7670659-7670739 1.45e-01 80 chr19:11998488-11998568 1.08e-01 39_[+2(4.50e-05)]_33 chrX:49031154-49031234 3.86e-03 42_[+2(2.40e-05)]_30 chr1:220078425-220078505 6.47e-03 35_[+1(3.65e-05)]_37 chr19:55791869-55791949 1.51e-02 21_[+2(5.87e-05)]_51 chr1:145476956-145477036 3.97e-04 29_[+4(5.52e-05)]_8_[+1(2.29e-05)]_\ 17_[+4(5.52e-05)]_2 chr21:43884136-43884216 1.61e-05 9_[+1(2.29e-05)]_10_[+1(2.29e-05)]_\ 45 chr4:603373-603453 8.28e-02 18_[+1(9.60e-06)]_25_[+1(9.60e-06)]_\ 21 chr5:159780444-159780524 3.88e-04 23_[+2(5.87e-05)]_3_[+1(5.02e-05)]_\ 38 chr11:20097344-20097424 1.26e-01 22_[+2(5.87e-05)]_50 chr1:226714604-226714684 2.22e-02 23_[+1(9.60e-06)]_49 chr18:32906803-32906883 4.03e-02 49_[+2(8.86e-05)]_23 chr22:25631996-25632076 1.90e-02 54_[+2(5.87e-05)]_18 chr19:12551914-12551994 9.42e-06 [+1(9.60e-06)]_12_[+4(5.52e-05)]_9_\ [+3(3.65e-05)]_11_[+4(5.52e-05)]_8_[+1(9.60e-06)] chr3:142686589-142686669 1.05e-01 51_[+2(4.50e-05)]_21 chr14:64971961-64972041 4.52e-02 41_[+1(9.60e-06)]_31 chr14:100913047-10091312 6.98e-02 80 chr19:156967-157047 8.56e-03 80 chr11:118799340-11879942 4.34e-04 25_[+3(4.99e-05)]_8_[+2(5.87e-05)]_\ 31 chr20:44827905-44827985 9.11e-03 48_[+1(5.02e-05)]_24 chr19:12512064-12512144 1.34e-04 13_[+1(9.60e-06)]_12_[+4(5.52e-05)]_\ 39 chr11:16394095-16394175 1.08e-01 37_[+1(3.65e-05)]_35 chr19:7739379-7739459 9.65e-03 80 chr22:36784250-36784330 2.75e-01 49_[+4(9.40e-05)]_23 chr1:25757212-25757292 2.48e-02 80 chr7:14029378-14029458 5.62e-03 32_[+2(9.89e-06)]_40 chr4:124206-124286 3.31e-02 60_[+2(4.50e-05)]_12 chr20:40247085-40247165 3.80e-02 80 chr1:164528084-164528164 5.63e-03 34_[+1(9.60e-06)]_38 chr12:122502859-12250293 6.15e-03 34_[+1(9.60e-06)]_38 chr15:75135016-75135096 2.67e-03 23_[+2(4.50e-05)]_49 chr10:102790933-10279101 1.15e-04 29_[+3(3.65e-05)]_43 chr14:24740352-24740432 4.20e-04 37_[+2(9.89e-06)]_6_[+4(5.52e-05)]_\ 21 chr18:74204962-74205042 1.85e-04 29_[+3(8.24e-05)]_8_[+2(4.50e-05)]_\ 27 chr4:124317834-124317914 6.45e-02 40_[+1(9.60e-06)]_32 chr6:109330819-109330899 3.87e-03 19_[+5(1.40e-05)]_53 chr3:195872143-195872223 4.68e-02 23_[+1(9.60e-06)]_25_[+1(9.60e-06)]_\ 16 chrX:68776366-68776446 1.01e-02 39_[+5(7.60e-05)]_33 chr19:47220353-47220433 5.08e-02 80 chr20:45035302-45035382 7.93e-02 56_[+2(4.50e-05)]_16 chr4:48782429-48782509 1.21e-01 13_[+4(5.52e-05)]_59 chr7:72298984-72299064 6.98e-03 9_[+3(4.99e-05)]_30_[+1(2.29e-05)]_\ 25 chr3:107241705-107241785 5.45e-03 53_[+5(9.54e-05)]_19 chr6:159527906-159527986 2.05e-04 22_[+3(5.92e-05)]_50 chr22:38054418-38054498 4.41e-03 22_[+3(1.63e-05)]_50 chr1:167691108-167691188 2.10e-03 63_[+5(9.54e-05)]_9 chr8:26240824-26240904 1.62e-03 23_[+3(4.99e-05)]_18_[+1(5.02e-05)]_\ 23 chr14:73925447-73925527 2.34e-02 11_[+3(5.92e-05)]_61 chr22:37582451-37582531 8.31e-04 25_[+2(9.89e-06)]_10_[+2(2.40e-05)]_\ 29 chr7:103628039-103628119 2.50e-02 52_[+2(9.89e-06)]_20 chr19:3275050-3275130 1.22e-02 30_[+1(3.65e-05)]_42 chr10:42863534-42863614 3.94e-03 17_[+1(3.65e-05)]_55 chr5:171847682-171847762 1.53e-04 20_[+3(3.65e-05)]_19_[+1(2.29e-05)]_\ 25 chr10:102802586-10280266 6.15e-03 8_[+4(5.52e-05)]_13_[+2(5.87e-05)]_\ 43 chr8:25315996-25316076 1.54e-04 61_[+2(2.40e-05)]_11 chr19:36193316-36193396 1.24e-02 44_[+2(2.40e-05)]_28 chr17:45177682-45177762 1.06e-03 35_[+3(3.65e-05)]_37 chr4:175204362-175204442 2.22e-03 39_[+2(4.50e-05)]_33 chr6:32143906-32143986 2.18e-03 80 chrX:46988608-46988688 3.00e-02 8_[+2(5.87e-05)]_64 chr19:4867696-4867776 1.12e-03 54_[+2(6.88e-05)]_18 chr8:125364271-125364351 2.62e-05 28_[+2(6.88e-05)]_44 chr8:145159231-145159311 1.06e-01 69_[+1(6.89e-05)]_3 chr2:43864317-43864397 2.15e-03 37_[+3(9.60e-06)]_35 chr8:71314403-71314483 6.60e-04 25_[+3(4.99e-05)]_47 chr20:52551020-52551100 2.59e-02 26_[+2(8.86e-05)]_46 chr3:194489993-194490073 1.46e-02 80 chr6:144600799-144600879 1.31e-02 14_[+1(9.60e-06)]_12_[+1(9.60e-06)]_\ 38 chr19:45873901-45873981 1.88e-05 7_[+3(9.60e-06)]_26_[+5(3.81e-05)]_\ 31 chr2:74685356-74685436 1.68e-03 14_[+3(9.60e-06)]_8_[+2(5.87e-05)]_\ 42 chr12:27676944-27677024 1.45e-03 23_[+1(3.65e-05)]_41_[+4(5.52e-05)] chr7:25894833-25894913 2.71e-06 15_[+2(6.88e-05)]_16_[+1(2.29e-05)]_\ 13_[+2(9.89e-06)]_12 chr19:2375512-2375592 6.26e-05 15_[+2(6.88e-05)]_27_[+1(2.29e-05)]_\ 22 chr16:11332592-11332672 9.37e-03 35_[+1(9.60e-06)]_37 chr19:18315067-18315147 2.79e-04 67_[+2(2.40e-05)]_5 chr1:153581830-153581910 6.74e-04 24_[+2(2.40e-05)]_48 chr19:8408168-8408248 2.45e-01 80 chr19:15563077-15563157 4.02e-03 34_[+2(3.11e-05)]_38 chr17:21837399-21837479 2.26e-01 16_[+1(6.89e-05)]_56 chr22:37997712-37997792 6.77e-01 80 chr1:24743448-24743528 4.88e-03 31_[+1(9.60e-06)]_41 chr22:39101550-39101630 7.50e-03 44_[+3(8.24e-05)]_8_[+2(5.87e-05)]_\ 12 chr19:13906040-13906120 8.73e-03 7_[+1(9.60e-06)]_65 chr19:54975242-54975322 5.42e-02 51_[+4(5.52e-05)]_21 chr1:112938736-112938816 2.58e-03 59_[+5(7.60e-05)]_13 chr17:58679435-58679515 1.81e-03 31_[+1(9.60e-06)]_41 chrX:80377218-80377298 4.51e-03 80 chr3:114866793-114866873 3.30e-02 80 chr6:132834289-132834369 2.06e-04 30_[+1(3.65e-05)]_42 chr1:17446009-17446089 3.32e-02 40_[+4(5.52e-05)]_8_[+4(5.52e-05)]_\ 16 chr2:88316472-88316552 7.19e-02 49_[+1(6.89e-05)]_23 chr9:104295756-104295836 3.73e-04 32_[+5(3.81e-05)]_40 chr6:11805600-11805680 3.29e-03 50_[+1(6.89e-05)]_9_[+5(2.40e-05)]_\ 5 chr3:114866147-114866227 7.61e-04 70_[+5(1.40e-05)]_2 chr11:47935611-47935691 1.44e-02 36_[+1(5.02e-05)]_36 chr10:80166872-80166952 8.25e-05 35_[+1(9.60e-06)]_9_[+5(9.54e-05)]_\ 20 chr17:14204285-14204365 3.57e-01 80 chr14:89882512-89882592 5.35e-05 38_[+3(3.65e-05)]_8_[+2(9.89e-06)]_\ 18 chr18:14132542-14132622 1.04e-01 80 chr1:24742195-24742275 6.01e-02 24_[+1(8.79e-05)]_48 chr1:16115336-16115416 2.49e-02 43_[+2(9.89e-06)]_29 chr17:18086668-18086748 1.39e-02 21_[+1(9.60e-06)]_51 chr18:48405377-48405457 5.02e-02 80 chr7:158750740-158750820 1.77e-01 80 chr19:12595661-12595741 1.70e-04 43_[+1(3.65e-05)]_29 chr19:4153508-4153588 2.32e-03 53_[+2(6.88e-05)]_19 chr3:101497964-101498044 4.20e-03 26_[+2(5.87e-05)]_10_[+4(5.52e-05)]_\ 28 chr1:120838374-120838454 1.34e-02 39_[+5(2.40e-05)]_33 chr2:191533780-191533860 2.64e-02 40_[+1(5.02e-05)]_32 chr1:247171450-247171530 1.76e-03 23_[+1(3.65e-05)]_49 chr1:31231782-31231862 1.81e-03 80 chr5:134361061-134361141 2.67e-02 24_[+2(9.89e-06)]_48 chr16:90143808-90143888 5.25e-02 56_[+2(5.87e-05)]_16 chr4:13546648-13546728 8.55e-03 48_[+1(3.65e-05)]_24 chr9:119449504-119449584 9.10e-02 80 chr1:41174585-41174665 1.11e-03 15_[+2(2.40e-05)]_43_[+5(2.40e-05)]_\ 6 chr17:8534208-8534288 3.51e-03 44_[+3(4.99e-05)]_28 chr14:104328939-10432901 1.01e-04 20_[+3(5.92e-05)]_9_[+2(9.89e-06)]_\ 35 chr2:219824225-219824305 1.08e-02 80 chr13:20532724-20532804 1.66e-03 33_[+5(1.40e-05)]_39 chr18:71959315-71959395 3.34e-03 47_[+3(3.65e-05)]_25 chr4:184580368-184580448 4.09e-02 36_[+2(4.50e-05)]_36 chr11:93060011-93060091 1.68e-02 29_[+1(9.60e-06)]_43 chr17:39943116-39943196 2.64e-03 80 chr7:66461552-66461632 2.93e-04 28_[+2(2.40e-05)]_31_[+5(3.81e-05)]_\ 5 chr2:44395572-44395652 7.52e-02 48_[+1(9.60e-06)]_24 chr1:200379228-200379308 6.95e-03 38_[+2(9.89e-06)]_34 chr17:42589308-42589388 4.00e-03 80 chr2:62932665-62932745 1.21e-03 80 chr6:112194688-112194768 1.04e-01 80 chr16:46782294-46782374 7.21e-03 30_[+1(3.65e-05)]_42 chr17:37321224-37321304 3.08e-03 80 chr13:44716187-44716267 6.19e-04 7_[+3(9.60e-06)]_8_[+2(8.86e-05)]_\ 49 chr19:14640048-14640128 6.81e-03 24_[+2(4.50e-05)]_9_[+4(5.52e-05)]_\ 31 chr2:103251946-103252026 2.13e-01 80 chr19:11849827-11849907 4.30e-06 13_[+4(5.52e-05)]_10_[+3(3.65e-05)]_\ 11_[+4(5.52e-05)]_8_[+1(9.60e-06)]_6 chr19:23433294-23433374 2.69e-01 80 chr19:12444530-12444610 3.25e-05 14_[+4(5.52e-05)]_9_[+3(3.65e-05)]_\ 11_[+4(5.52e-05)]_8_[+1(3.65e-05)]_6 chr3:9885703-9885783 2.89e-04 80 chr16:53537374-53537454 5.00e-02 31_[+2(5.87e-05)]_41 chr10:45474269-45474349 5.84e-02 33_[+2(3.11e-05)]_39 chrX:152736035-152736115 7.94e-05 37_[+2(2.40e-05)]_35 chr11:32197943-32198023 5.61e-02 26_[+1(3.65e-05)]_46 chr1:153895578-153895658 9.05e-05 20_[+1(6.89e-05)]_11_[+1(2.29e-05)]_\ 33 chr21:47604561-47604641 4.80e-02 80 chr17:80433436-80433516 1.78e-02 29_[+2(9.89e-06)]_43 chr4:52709064-52709144 4.55e-02 6_[+1(5.02e-05)]_66 chr17:17566735-17566815 6.65e-02 49_[+1(5.02e-05)]_23 chr20:56596713-56596793 5.03e-04 80 chr6:157950432-157950512 2.32e-02 34_[+1(9.60e-06)]_38 chr16:639785-639865 2.82e-03 67_[+5(9.54e-05)]_5 chr5:96144093-96144173 4.73e-02 80 chr11:107798898-10779897 3.29e-01 80 chr17:74667864-74667944 4.88e-03 28_[+5(7.60e-05)]_44 chr2:25194594-25194674 4.45e-06 14_[+1(6.89e-05)]_9_[+5(1.40e-05)]_\ 25_[+4(5.52e-05)]_8 chr16:22385992-22386072 1.64e-01 80 chr6:79943677-79943757 2.59e-02 9_[+1(9.60e-06)]_63 chr19:19174526-19174606 2.41e-03 80 chrX:47420473-47420553 2.62e-02 80 chr19:12476541-12476621 1.43e-03 51_[+1(9.60e-06)]_21 chr21:44394702-44394782 4.45e-02 80 chr19:55973274-55973354 2.78e-03 31_[+5(7.60e-05)]_17_[+1(6.89e-05)]_\ 16 chr19:41221029-41221109 3.93e-03 16_[+5(7.60e-05)]_17_[+1(8.79e-05)]_\ 31 chr4:110657059-110657139 6.60e-01 80 chr6:36165069-36165149 6.54e-05 37_[+5(1.40e-05)]_35 chr15:33487008-33487088 5.71e-01 80 chr11:11643590-11643670 6.60e-02 80 chr20:56036303-56036383 7.41e-04 35_[+1(9.60e-06)]_37 chr11:63953366-63953446 3.70e-03 80 chr10:104263591-10426367 1.09e-04 43_[+1(8.79e-05)]_9_[+5(1.40e-05)]_\ 12 chr17:71358989-71359069 2.50e-04 55_[+5(2.40e-05)]_17 chr2:198669212-198669292 2.22e-03 80 chr6:32146089-32146169 1.95e-05 7_[+4(5.52e-05)]_36_[+1(8.79e-05)]_\ 21 chr15:70392054-70392134 5.35e-04 18_[+1(2.29e-05)]_36_[+2(5.87e-05)]_\ 10 chr14:23790473-23790553 7.62e-02 80 chr19:1041069-1041149 2.17e-03 44_[+2(2.40e-05)]_28 chr16:67926982-67927062 1.88e-04 34_[+4(5.52e-05)]_8_[+1(2.29e-05)]_\ 22 chr1:151254603-151254683 5.02e-01 80 chr16:84538266-84538346 3.27e-02 80 chr7:97761401-97761481 1.74e-02 38_[+2(9.89e-06)]_34 chr12:56123476-56123556 9.84e-06 23_[+2(9.89e-06)]_19_[+4(9.40e-05)]_\ 22 chr19:45409814-45409894 1.45e-05 19_[+1(9.60e-06)]_21_[+2(2.40e-05)]_\ 24 chr9:34989523-34989603 2.32e-02 8_[+2(6.88e-05)]_64 chr21:34494557-34494637 8.81e-04 33_[+1(5.02e-05)]_9_[+5(7.60e-05)]_\ 22 chr10:5522664-5522744 7.18e-03 42_[+1(3.65e-05)]_30 chr16:66914335-66914415 1.27e-04 80 chr7:150521628-150521708 5.46e-03 58_[+3(3.65e-05)]_14 chr6:142330935-142331015 9.85e-02 48_[+1(5.02e-05)]_24 chr2:73298488-73298568 7.62e-04 66_[+4(5.52e-05)]_6 chr7:131769808-131769888 1.12e-01 37_[+2(4.50e-05)]_35 chr11:64008961-64009041 1.52e-01 46_[+1(6.89e-05)]_26 chrX:47931262-47931342 3.44e-05 8_[+4(5.52e-05)]_5_[+2(4.50e-05)]_\ 17_[+3(4.99e-05)]_26 chr16:22682043-22682123 1.35e-02 38_[+1(9.60e-06)]_34 chr17:18163851-18163931 9.77e-01 80 chr1:156549361-156549441 1.63e-01 49_[+2(4.50e-05)]_23 chr3:141726713-141726793 1.73e-03 49_[+2(8.86e-05)]_23 chr17:21187840-21187920 7.02e-01 80 chr22:29999282-29999362 7.20e-03 34_[+2(8.86e-05)]_38 chr19:33166111-33166191 1.58e-02 22_[+5(7.60e-05)]_50 chr7:73017866-73017946 8.67e-04 10_[+4(5.52e-05)]_16_[+1(9.60e-06)]_\ 38 chr2:128284949-128285029 1.87e-03 46_[+2(9.89e-06)]_26 chr3:88108222-88108302 6.07e-03 48_[+1(2.29e-05)]_24 chr20:25524359-25524439 7.75e-02 80 chr12:53473217-53473297 1.04e-03 8_[+2(2.40e-05)]_31_[+5(3.81e-05)]_\ 25 chr16:15116137-15116217 6.25e-02 37_[+1(6.89e-05)]_35 chr11:58825959-58826039 1.38e-03 80 chr19:50706757-50706837 4.90e-03 19_[+1(2.29e-05)]_53 chr4:87973934-87974014 4.99e-02 49_[+1(9.60e-06)]_23 chr12:8179275-8179355 2.64e-05 50_[+2(2.40e-05)]_22 chr11:44921660-44921740 7.17e-03 58_[+3(3.65e-05)]_14 chr18:29673636-29673716 3.28e-02 48_[+1(2.29e-05)]_24 chr12:131613774-13161385 6.64e-03 9_[+4(9.40e-05)]_12_[+1(3.65e-05)]_\ 23_[+1(6.89e-05)]_3_[+4(9.40e-05)]_1 chr7:99798001-99798081 2.49e-02 60_[+2(9.89e-06)]_12 chr8:125121546-125121626 2.36e-02 27_[+1(2.29e-05)]_45 chr19:24097498-24097578 9.09e-02 62_[+2(4.50e-05)]_10 chr16:70052370-70052450 9.55e-02 18_[+2(8.86e-05)]_54 chr19:8590434-8590514 2.91e-02 80 chr1:150601643-150601723 2.31e-06 33_[+2(2.40e-05)]_15_[+1(3.65e-05)]_\ 16 chr15:37393907-37393987 6.22e-02 52_[+2(9.89e-06)]_20 chr20:60813317-60813397 6.19e-04 37_[+1(8.79e-05)]_35 chr22:40440279-40440359 5.34e-02 80 chr13:20437855-20437935 1.27e-02 34_[+3(4.99e-05)]_38 chr12:120315155-12031523 9.62e-03 80 chr3:138921299-138921379 2.34e-01 80 chr3:185826983-185827063 1.89e-02 80 chrX:47077316-47077396 3.42e-03 54_[+2(6.88e-05)]_18 chr15:44487543-44487623 1.64e-03 29_[+5(3.81e-05)]_43 chr16:8964779-8964859 3.49e-01 80 chr12:57848951-57849031 1.39e-03 80 chr3:100211298-100211378 3.06e-03 80 chr9:135448445-135448525 3.86e-04 30_[+2(9.89e-06)]_42 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************